Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397500 | XP_013470032.1 | 98.757 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397500 | sp|Q93ZR1|ELP3_ARATH | 91.327 | 565 | 47 | 1 | 1 | 563 | 1 | 565 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397500 | A0A072W1A9 | 98.757 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1154 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1397500 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136480 | Msa1397500 | 0.957230 | 4.477352e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397500 | MtrunA17_Chr1g0207811 | 98.757 | 563 | 7 | 0 | 1 | 563 | 1 | 563 | 0.0 | 1154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397500 | AT5G50320.1 | 91.327 | 565 | 47 | 1 | 1 | 563 | 1 | 565 | 0.0 | 1087 |
Find 208 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGTGAGCTCCATGTTTA+TGG | 0.142211 | tig0022164:+10164 | Msa1397500:CDS |
| TCAGGTTGAGTTTATATTAA+TGG | 0.195676 | tig0022164:+7470 | Msa1397500:intron |
| CACTACTTGTCCAGAGCTTA+TGG | 0.210436 | tig0022164:+10127 | Msa1397500:CDS |
| ACGCCATTACTACAGAAAAT+TGG | 0.214514 | tig0022164:+10581 | Msa1397500:CDS |
| CGAACAAGTTCCACCTCTTC+TGG | 0.222979 | tig0022164:-9752 | None:intergenic |
| ACTAAGATAGCTGTAATTTC+TGG | 0.226240 | tig0022164:+10549 | Msa1397500:CDS |
| GACGGGTTTGGCTCGGAGTT+TGG | 0.246198 | tig0022164:-6985 | None:intergenic |
| ATTACCGTGATTACTTTATA+AGG | 0.254776 | tig0022164:+7520 | Msa1397500:CDS |
| ACTTGTTCGTCGTGATTATA+TGG | 0.272919 | tig0022164:+9766 | Msa1397500:CDS |
| TGCAATCATCTCAACAAGTT+TGG | 0.275543 | tig0022164:-6928 | None:intergenic |
| CCAATGCCTTTGGTGACCTC+TGG | 0.281758 | tig0022164:+9490 | Msa1397500:CDS |
| CAGGTTGAGTTTATATTAAT+GGG | 0.294302 | tig0022164:+7471 | Msa1397500:intron |
| GGGTTATGGTACACTTCTTA+TGG | 0.305200 | tig0022164:+10488 | Msa1397500:intron |
| CTACCTCTTGTCTGCACATA+AGG | 0.308325 | tig0022164:-7308 | None:intergenic |
| CCACCTCTTCTGGTTTAATC+TGG | 0.319149 | tig0022164:-9742 | None:intergenic |
| ACGGGTTTGGCTCGGAGTTT+GGG | 0.323050 | tig0022164:-6984 | None:intergenic |
| CTTGAGCAGGATATCCTTGT+TGG | 0.326582 | tig0022164:+10074 | Msa1397500:intron |
| AATTATTGTTAACAGGGTTA+TGG | 0.336285 | tig0022164:+10474 | Msa1397500:intron |
| TTACTGATTATTATTACATT+AGG | 0.340713 | tig0022164:-10638 | None:intergenic |
| ATTGATCAGCTTAAGCGTTT+AGG | 0.349355 | tig0022164:+7332 | Msa1397500:CDS |
| AGTACTGCAAATTAAGATAC+TGG | 0.351299 | tig0022164:+10806 | Msa1397500:three_prime_UTR |
| AAACCCGTCCGAACCGCATC+TGG | 0.355392 | tig0022164:+6999 | Msa1397500:CDS |
| CTTTATGAGCTCTGGAAAAC+TGG | 0.356965 | tig0022164:+9240 | Msa1397500:CDS |
| CAATGCCTTTGGTGACCTCT+GGG | 0.357014 | tig0022164:+9491 | Msa1397500:CDS |
| ACTCTTGTAATACGTGGAAC+TGG | 0.357820 | tig0022164:+9216 | Msa1397500:CDS |
| GTTTAAAATGTCGCGATGTT+CGG | 0.368009 | tig0022164:+9566 | Msa1397500:CDS |
| GGGTTGAGAAAGGGAATCTA+AGG | 0.374003 | tig0022164:+9512 | Msa1397500:CDS |
| ATTAGGTATTTCATCATGTA+AGG | 0.374054 | tig0022164:-10621 | None:intergenic |
| AGGAGGCCAGATTATTGTCT+TGG | 0.377113 | tig0022164:+8551 | Msa1397500:intron |
| AATCTTCATGATGCTTTGTC+TGG | 0.377549 | tig0022164:+7543 | Msa1397500:CDS |
| CAGTACTAGCTTACAGAGAA+TGG | 0.381874 | tig0022164:-10790 | None:intergenic |
| TACCTGGATTCCAGCTTCTC+TGG | 0.383322 | tig0022164:-9590 | None:intergenic |
| TCTGCTGCGTGCCGTAAGTA+TGG | 0.383722 | tig0022164:+6891 | Msa1397500:CDS |
| TCCCTTTCAACACCAACATT+TGG | 0.384171 | tig0022164:-9126 | None:intergenic |
| TGGAACTTTCATGTCCCTTC+CGG | 0.386776 | tig0022164:+7494 | Msa1397500:CDS |
| GGAACTGCTGTACCGGTTCA+TGG | 0.389741 | tig0022164:+10185 | Msa1397500:CDS |
| AGAACCTCTCGTTCGGAGTC+TGG | 0.399137 | tig0022164:-6957 | None:intergenic |
| CTAAGATAGCTGTAATTTCT+GGG | 0.402023 | tig0022164:+10550 | Msa1397500:CDS |
| CGCCATTACTACAGAAAATT+GGG | 0.402981 | tig0022164:+10582 | Msa1397500:CDS |
| CTGAGTACTGTATTCAAAAT+CGG | 0.405571 | tig0022164:-7117 | None:intergenic |
| ATATCCTTGTTGGTTTGTTA+CGG | 0.406404 | tig0022164:+10084 | Msa1397500:CDS |
| GCGGGATATTCCAATGCCTT+TGG | 0.406417 | tig0022164:+9480 | Msa1397500:CDS |
| GGCTAAAGATGCCGGTTTCA+AGG | 0.407082 | tig0022164:+8706 | Msa1397500:CDS |
| CAAGTTGCAACAATGCTATA+TGG | 0.408186 | tig0022164:-10924 | None:intergenic |
| GCAATCATCTCAACAAGTTT+GGG | 0.412290 | tig0022164:-6927 | None:intergenic |
| CCTGGGAAAGGAGGCTTTGA+AGG | 0.415150 | tig0022164:+6759 | Msa1397500:CDS |
| AGATGCGGTTCGGACGGGTT+TGG | 0.419639 | tig0022164:-6997 | None:intergenic |
| GAGCATTGAGATCAACTTTG+TGG | 0.431098 | tig0022164:-6863 | None:intergenic |
| CAACATCCTCGTAAGTGCTT+TGG | 0.432775 | tig0022164:-8628 | None:intergenic |
| AAAATATGAATGCCTTATGA+TGG | 0.435686 | tig0022164:-10745 | None:intergenic |
| GTGACCTCTGGGGTTGAGAA+AGG | 0.437552 | tig0022164:+9502 | Msa1397500:CDS |
| GGAGGCCAGATTATTGTCTT+GGG | 0.438031 | tig0022164:+8552 | Msa1397500:intron |
| TTCTTACGGTTGTACACGAT+TGG | 0.440324 | tig0022164:+8595 | Msa1397500:CDS |
| ACACCAACATTTGGAAGATC+AGG | 0.441020 | tig0022164:-9117 | None:intergenic |
| ATTATATGGCAAATGAAGGT+TGG | 0.442902 | tig0022164:+9780 | Msa1397500:CDS |
| TGCTCGAATTGCACGCATAC+TGG | 0.443181 | tig0022164:-7162 | None:intergenic |
| TAGGTTAATCTATTAAAGTT+CGG | 0.447850 | tig0022164:-10853 | None:intergenic |
| GTGCTTGGAGTTATCGAGAA+TGG | 0.452767 | tig0022164:+6698 | Msa1397500:exon |
| TGCTGTACCGGTTCATGGGC+GGG | 0.453368 | tig0022164:+10190 | Msa1397500:CDS |
| GGTTGTACACGATTGGAGAT+TGG | 0.457491 | tig0022164:+8602 | Msa1397500:CDS |
| TCAGAATCCCGCCCATGAAC+CGG | 0.459387 | tig0022164:-10197 | None:intergenic |
| GACACAAATGTTACCGGTGG+TGG | 0.462023 | tig0022164:-7072 | None:intergenic |
| CGGTTCGGACGGGTTTGGCT+CGG | 0.462397 | tig0022164:-6992 | None:intergenic |
| TTCCAAATGTTGGTGTTGAA+AGG | 0.463184 | tig0022164:+9124 | Msa1397500:CDS |
| GCAGTAGACACAAATGTTAC+CGG | 0.465327 | tig0022164:-7078 | None:intergenic |
| ACTACTTGTCCAGAGCTTAT+GGG | 0.466121 | tig0022164:+10128 | Msa1397500:CDS |
| TCCAAATGTTGGTGTTGAAA+GGG | 0.466271 | tig0022164:+9125 | Msa1397500:CDS |
| TTACAGAGAATGGGAGGTAA+TGG | 0.474543 | tig0022164:-10780 | None:intergenic |
| AAATCGGAGTCAGGACCGCC+AGG | 0.474986 | tig0022164:-7101 | None:intergenic |
| TTATATGGCAAATGAAGGTT+GGG | 0.475457 | tig0022164:+9781 | Msa1397500:CDS |
| GGGTGCAGTCGTACCAGAGA+GGG | 0.477885 | tig0022164:-6212 | None:intergenic |
| CCAGAGGTCACCAAAGGCAT+TGG | 0.478943 | tig0022164:-9490 | None:intergenic |
| AGTCCCTTGTTTAGAGCAGA+TGG | 0.482729 | tig0022164:+9177 | Msa1397500:CDS |
| TACAGAGAATGGGAGGTAAT+GGG | 0.482797 | tig0022164:-10779 | None:intergenic |
| AACATTTGTGTCTACTGCCC+TGG | 0.483658 | tig0022164:+7083 | Msa1397500:CDS |
| CCTTCAAAGCCTCCTTTCCC+AGG | 0.487403 | tig0022164:-6759 | None:intergenic |
| GAACTGGGCTTTATGAGCTC+TGG | 0.487484 | tig0022164:+9232 | Msa1397500:CDS |
| CTCTTGTAATACGTGGAACT+GGG | 0.488163 | tig0022164:+9217 | Msa1397500:CDS |
| GGGAAGAAGAACCTCTCGTT+CGG | 0.489882 | tig0022164:-6964 | None:intergenic |
| CTGTATTCAAAATCGGAGTC+AGG | 0.494942 | tig0022164:-7110 | None:intergenic |
| GGCAACTGCAATGGTGGCAG+AGG | 0.495159 | tig0022164:+6719 | Msa1397500:CDS |
| TACCTCTTGTCTGCACATAA+GGG | 0.499999 | tig0022164:-7307 | None:intergenic |
| ACAGTAACAAACCTTGAAAC+CGG | 0.500422 | tig0022164:-8717 | None:intergenic |
| TGTTTATGGAACTGCTGTAC+CGG | 0.502199 | tig0022164:+10178 | Msa1397500:CDS |
| TGAGGCCCAAGACAATAATC+TGG | 0.507785 | tig0022164:-8557 | None:intergenic |
| AGTGAGCGATAGTGTGAGGA+AGG | 0.508703 | tig0022164:-6266 | None:intergenic |
| TATTCCAGATGCGGTTCGGA+CGG | 0.509432 | tig0022164:-7003 | None:intergenic |
| ATAGCTGTAATTTCTGGGGT+TGG | 0.510369 | tig0022164:+10555 | Msa1397500:CDS |
| CATAGTGCAACCAAGTGTAT+TGG | 0.511814 | tig0022164:+7609 | Msa1397500:CDS |
| ATTCCAGATGCGGTTCGGAC+GGG | 0.513072 | tig0022164:-7002 | None:intergenic |
| GACCAGAGAAGCTGGAATCC+AGG | 0.513139 | tig0022164:+9588 | Msa1397500:CDS |
| TGAAACCGGCATCTTTAGCC+AGG | 0.513631 | tig0022164:-8703 | None:intergenic |
| CGGCTATTCCAGATGCGGTT+CGG | 0.514134 | tig0022164:-7007 | None:intergenic |
| GATGTTCGGACCAGAGAAGC+TGG | 0.521187 | tig0022164:+9580 | Msa1397500:CDS |
| CTGCGACAAATGCTTTCTTA+CGG | 0.521566 | tig0022164:+8581 | Msa1397500:CDS |
| CTAAAACAATTGAACTGTTG+AGG | 0.521704 | tig0022164:-6676 | None:intergenic |
| CACGTGCTTCTTCTTCACTA+AGG | 0.522717 | tig0022164:-6788 | None:intergenic |
| CGTGATTATATGGCAAATGA+AGG | 0.524748 | tig0022164:+9776 | Msa1397500:CDS |
| GGAGTTAGCATTAGCTCGAA+TGG | 0.524838 | tig0022164:+9534 | Msa1397500:CDS |
| AATTGTCATGCCAATACACT+TGG | 0.525376 | tig0022164:-7619 | None:intergenic |
| CGCCTCTTCTACATTGGCAG+AGG | 0.532370 | tig0022164:-7571 | None:intergenic |
| TGCCCTCACATTGCCACCAC+CGG | 0.535961 | tig0022164:+7059 | Msa1397500:CDS |
| GTGCAGTCGTACCAGAGAGG+GGG | 0.538606 | tig0022164:-6210 | None:intergenic |
| AATTGGGATATGAGCTTGAA+GGG | 0.539350 | tig0022164:+10598 | Msa1397500:CDS |
| CGTCACCGCCTCTTCTACAT+TGG | 0.539713 | tig0022164:-7577 | None:intergenic |
| TGGTACACTTCTTATGGAGG+AGG | 0.541142 | tig0022164:+10494 | Msa1397500:CDS |
| AGTACTAGCTTACAGAGAAT+GGG | 0.541451 | tig0022164:-10789 | None:intergenic |
| AAAGGAGGCTTTGAAGGCCA+CGG | 0.542814 | tig0022164:+6765 | Msa1397500:CDS |
| ATTAGCTCGAATGGAAGACT+TGG | 0.543470 | tig0022164:+9543 | Msa1397500:CDS |
| GGAGAAACTGAATCAGTGAT+GGG | 0.543828 | tig0022164:-6293 | None:intergenic |
| GTCATATGAAGATACACGGC+AGG | 0.543921 | tig0022164:+9814 | Msa1397500:CDS |
| AACTTTCATGTCCCTTCCGG+CGG | 0.546193 | tig0022164:+7497 | Msa1397500:CDS |
| GAACTGCTGTACCGGTTCAT+GGG | 0.546285 | tig0022164:+10186 | Msa1397500:CDS |
| ATGAGCTCTGGAAAACTGGC+AGG | 0.546949 | tig0022164:+9244 | Msa1397500:CDS |
| AAATATGAATGCCTTATGAT+GGG | 0.547238 | tig0022164:-10744 | None:intergenic |
| GAACACTTACCCATAAGCTC+TGG | 0.547667 | tig0022164:-10137 | None:intergenic |
| AAGCCTCCTTTCCCAGGACG+TGG | 0.547795 | tig0022164:-6753 | None:intergenic |
| ATGATGTCCACAAGTTGCTC+AGG | 0.548538 | tig0022164:-9406 | None:intergenic |
| GGGAGAAACTGAATCAGTGA+TGG | 0.549026 | tig0022164:-6294 | None:intergenic |
| TCGTGTTTATAGAGTTCAGC+GGG | 0.550160 | tig0022164:+9462 | Msa1397500:CDS |
| GAAGAGTGAGCGATAGTGTG+AGG | 0.552750 | tig0022164:-6270 | None:intergenic |
| AAGCCCATCTGCTCTAAACA+AGG | 0.553799 | tig0022164:-9181 | None:intergenic |
| TGACCTCTGGGGTTGAGAAA+GGG | 0.554088 | tig0022164:+9503 | Msa1397500:CDS |
| CTGCTGTACCGGTTCATGGG+CGG | 0.556681 | tig0022164:+10189 | Msa1397500:CDS |
| ACTCTATAAACACGAGTCCA+TGG | 0.559334 | tig0022164:-9454 | None:intergenic |
| GCTCTGGACAAGTAGTGTTA+CGG | 0.560794 | tig0022164:-10121 | None:intergenic |
| AAGTCACCACGTCCTGGGAA+AGG | 0.561658 | tig0022164:+6747 | Msa1397500:CDS |
| CACGTGAGAGGCCATACTTA+CGG | 0.562539 | tig0022164:-6902 | None:intergenic |
| ATGGTCGACTTATCTCATAA+AGG | 0.565397 | tig0022164:+6840 | Msa1397500:CDS |
| CTTCTTCTTCACTAAGGCCG+TGG | 0.565667 | tig0022164:-6782 | None:intergenic |
| AAATTGGGATATGAGCTTGA+AGG | 0.569511 | tig0022164:+10597 | Msa1397500:CDS |
| GACAAACTTGCATAACCATA+CGG | 0.570245 | tig0022164:-10902 | None:intergenic |
| ATCGAGAATGGCAACTGCAA+TGG | 0.572062 | tig0022164:+6710 | Msa1397500:exon |
| AACCCTTATGTGCAGACAAG+AGG | 0.578250 | tig0022164:+7305 | Msa1397500:CDS |
| ATGTCCACAAGTTGCTCAGG+TGG | 0.579117 | tig0022164:-9403 | None:intergenic |
| TCCTTGCAATGGTACCTCCA+TGG | 0.580002 | tig0022164:+9437 | Msa1397500:CDS |
| GGGGTGCAGTCGTACCAGAG+AGG | 0.580051 | tig0022164:-6213 | None:intergenic |
| GGAGAAACTTACAGTAGCAG+AGG | 0.580634 | tig0022164:-6315 | None:intergenic |
| TTAGCTCGAATGGAAGACTT+GGG | 0.582791 | tig0022164:+9544 | Msa1397500:CDS |
| CCAGATTAAACCAGAAGAGG+TGG | 0.582970 | tig0022164:+9742 | Msa1397500:CDS |
| CGTAAGAAAGCATTTGTCGC+AGG | 0.582996 | tig0022164:-8580 | None:intergenic |
| ACACTTGGTTGCACTATGCT+CGG | 0.583303 | tig0022164:-7604 | None:intergenic |
| GGTGCAGTCGTACCAGAGAG+GGG | 0.583926 | tig0022164:-6211 | None:intergenic |
| TTATCCACCTGAGCAACTTG+TGG | 0.584183 | tig0022164:+9399 | Msa1397500:CDS |
| CACCTCTGCCAATGTAGAAG+AGG | 0.586680 | tig0022164:+7569 | Msa1397500:CDS |
| CGAATTGCACGCATACTGGT+AGG | 0.587485 | tig0022164:-7158 | None:intergenic |
| GTTGAGTTTATATTAATGGG+TGG | 0.587623 | tig0022164:+7474 | Msa1397500:CDS |
| GTCCCTTGTTTAGAGCAGAT+GGG | 0.588499 | tig0022164:+9178 | Msa1397500:CDS |
| GTTGCTCGTGACACTAATAG+AGG | 0.589637 | tig0022164:+8647 | Msa1397500:CDS |
| TGCAGAGATTGTAAACTCCA+TGG | 0.589639 | tig0022164:+6821 | Msa1397500:CDS |
| GTGAGCGATAGTGTGAGGAA+GGG | 0.589683 | tig0022164:-6265 | None:intergenic |
| TTCTGACAAGCTACAACACC+AGG | 0.589825 | tig0022164:+10214 | Msa1397500:CDS |
| CAAGTTTGGGTGCACGTGAG+AGG | 0.590702 | tig0022164:-6914 | None:intergenic |
| GGAGTTTACAATCTCTGCAA+TGG | 0.592885 | tig0022164:-6817 | None:intergenic |
| ATGCCTGATCTTCCAAATGT+TGG | 0.593013 | tig0022164:+9114 | Msa1397500:CDS |
| ACACATGCTACAAAATTACA+TGG | 0.595514 | tig0022164:-10700 | None:intergenic |
| TACCCCACTCTTGTAATACG+TGG | 0.597220 | tig0022164:+9210 | Msa1397500:CDS |
| GTGTATACAACAGCGAATGT+AGG | 0.603146 | tig0022164:-10872 | None:intergenic |
| AAGTAATCACGGTAATCCGC+CGG | 0.605266 | tig0022164:-7513 | None:intergenic |
| TCACCAGATTAAACCAGAAG+AGG | 0.607594 | tig0022164:+9739 | Msa1397500:CDS |
| GAAAGCATTTGTCGCAGGTG+AGG | 0.608219 | tig0022164:-8575 | None:intergenic |
| GTTCCACGTATTACAAGAGT+GGG | 0.609518 | tig0022164:-9213 | None:intergenic |
| GAGAATGGCAACTGCAATGG+TGG | 0.611617 | tig0022164:+6713 | Msa1397500:exon |
| CTCTGCCAATGTAGAAGAGG+CGG | 0.613175 | tig0022164:+7572 | Msa1397500:CDS |
| TCACCACGTCCTGGGAAAGG+AGG | 0.613203 | tig0022164:+6750 | Msa1397500:CDS |
| TGCAGTCGTACCAGAGAGGG+GGG | 0.615767 | tig0022164:-6209 | None:intergenic |
| TCCATGGAGGTACCATTGCA+AGG | 0.615787 | tig0022164:-9438 | None:intergenic |
| TTGTTACGGCTGCGAAAATG+TGG | 0.617345 | tig0022164:+10098 | Msa1397500:CDS |
| AGTTCCACGTATTACAAGAG+TGG | 0.617723 | tig0022164:-9214 | None:intergenic |
| GATTCCTTATAAAGTAATCA+CGG | 0.618997 | tig0022164:-7524 | None:intergenic |
| ATCACGGTAATCCGCCGGAA+GGG | 0.620461 | tig0022164:-7508 | None:intergenic |
| TTTAGGTCACAGTGTAGACA+AGG | 0.621502 | tig0022164:+7349 | Msa1397500:CDS |
| TACAGTACTCAGTCTTACAC+TGG | 0.624637 | tig0022164:+7128 | Msa1397500:CDS |
| TTACCGGTGGTGGCAATGTG+AGG | 0.625457 | tig0022164:-7062 | None:intergenic |
| TTATGGTACACTTCTTATGG+AGG | 0.625503 | tig0022164:+10491 | Msa1397500:CDS |
| GTATACACGAGCTGACCGTA+TGG | 0.627033 | tig0022164:+10887 | Msa1397500:three_prime_UTR |
| AATCACGGTAATCCGCCGGA+AGG | 0.629594 | tig0022164:-7509 | None:intergenic |
| CTTTGACATGACAGCAACAA+CGG | 0.631924 | tig0022164:-7027 | None:intergenic |
| GTACAGCAGTTCCATAAACA+TGG | 0.632941 | tig0022164:-10175 | None:intergenic |
| AATGCCTTTGGTGACCTCTG+GGG | 0.633442 | tig0022164:+9492 | Msa1397500:CDS |
| CTTATGTGCAGACAAGAGGT+AGG | 0.635365 | tig0022164:+7309 | Msa1397500:CDS |
| TAAGATAGCTGTAATTTCTG+GGG | 0.637498 | tig0022164:+10551 | Msa1397500:CDS |
| TTTACCAGACTCCGAACGAG+AGG | 0.637913 | tig0022164:+6953 | Msa1397500:CDS |
| GAGAAACTTACAGTAGCAGA+GGG | 0.642848 | tig0022164:-6314 | None:intergenic |
| GCGATAGTGTGAGGAAGGGA+CGG | 0.648261 | tig0022164:-6261 | None:intergenic |
| AGCCCATCTGCTCTAAACAA+GGG | 0.651856 | tig0022164:-9180 | None:intergenic |
| ATTTGTGTCTACTGCCCTGG+CGG | 0.653081 | tig0022164:+7086 | Msa1397500:CDS |
| AATCGGAGTCAGGACCGCCA+GGG | 0.654250 | tig0022164:-7100 | None:intergenic |
| CATAGCAAGGATCCTTGCAA+TGG | 0.656475 | tig0022164:+9426 | Msa1397500:CDS |
| GTATGCGTGCAATTCGAGCA+AGG | 0.657253 | tig0022164:+7165 | Msa1397500:CDS |
| AACTTGTGGACATCATAGCA+AGG | 0.660784 | tig0022164:+9413 | Msa1397500:CDS |
| TGTTGGTGTTGAAAGGGACA+TGG | 0.661690 | tig0022164:+9131 | Msa1397500:CDS |
| GAGAAACTGAATCAGTGATG+GGG | 0.667376 | tig0022164:-6292 | None:intergenic |
| TCAACCCCAGAGGTCACCAA+AGG | 0.669888 | tig0022164:-9496 | None:intergenic |
| TTTATGAGATAAGTCGACCA+TGG | 0.671183 | tig0022164:-6838 | None:intergenic |
| TTCTTATGGAGGAGGCTGAG+CGG | 0.672319 | tig0022164:+10502 | Msa1397500:CDS |
| CTCGTGTTTATAGAGTTCAG+CGG | 0.673150 | tig0022164:+9461 | Msa1397500:CDS |
| TGGAGTCCAAAGCACTTACG+AGG | 0.676860 | tig0022164:+8622 | Msa1397500:CDS |
| GCAATGTGAGGGCAACGATG+AGG | 0.677142 | tig0022164:-7050 | None:intergenic |
| AACAACGGCTATTCCAGATG+CGG | 0.680136 | tig0022164:-7012 | None:intergenic |
| ACTAGCTTACAGAGAATGGG+AGG | 0.681451 | tig0022164:-10786 | None:intergenic |
| GGTTGAGAAAGGGAATCTAA+GGG | 0.683574 | tig0022164:+9513 | Msa1397500:CDS |
| TACCGGTGGTGGCAATGTGA+GGG | 0.686745 | tig0022164:-7061 | None:intergenic |
| ATTCCCTTTCTCAACCCCAG+AGG | 0.690536 | tig0022164:-9506 | None:intergenic |
| GTAGACACAAATGTTACCGG+TGG | 0.711036 | tig0022164:-7075 | None:intergenic |
| GCAGCCGTAACAAACCAACA+AGG | 0.750250 | tig0022164:-10088 | None:intergenic |
| TTCCACGTATTACAAGAGTG+GGG | 0.762155 | tig0022164:-9212 | None:intergenic |
| CTATAAACACGAGTCCATGG+AGG | 0.762944 | tig0022164:-9451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTTTTTAAAAAAAAC+TGG | - | tig0022164:7896-7915 | None:intergenic | 10.0% |
| !!! | TATGTTTTTTTTTTTTTCTT+TGG | + | tig0022164:9064-9083 | Msa1397500:intron | 10.0% |
| !! | TATCATGTAGTTATATTAAT+GGG | + | tig0022164:7431-7450 | Msa1397500:intron | 15.0% |
| !!! | CACAAAATCTATTTTTTTTA+AGG | - | tig0022164:7789-7808 | None:intergenic | 15.0% |
| !!! | AAAAAAAACTGGATTTTTAT+GGG | - | tig0022164:7885-7904 | None:intergenic | 15.0% |
| !!! | TAAAAAAAACTGGATTTTTA+TGG | - | tig0022164:7886-7905 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTTCAAAAACA+AGG | - | tig0022164:7950-7969 | None:intergenic | 15.0% |
| !!! | TTTGTTTACTAGTATTATTT+TGG | + | tig0022164:9676-9695 | Msa1397500:intron | 15.0% |
| !!! | TTACTGATTATTATTACATT+AGG | - | tig0022164:10641-10660 | None:intergenic | 15.0% |
| !!! | TCAGTAATAGTTTTTTTTTA+AGG | + | tig0022164:10654-10673 | Msa1397500:three_prime_UTR | 15.0% |
| !!! | CAGTAATAGTTTTTTTTTAA+GGG | + | tig0022164:10655-10674 | Msa1397500:three_prime_UTR | 15.0% |
| !!! | ATGTGTTCTATTTTACTTAA+AGG | - | tig0022164:7248-7267 | None:intergenic | 20.0% |
| !! | GTATCATGTAGTTATATTAA+TGG | + | tig0022164:7430-7449 | Msa1397500:intron | 20.0% |
| !! | TCAACTTGCAAATAATTAAA+TGG | - | tig0022164:7662-7681 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCAAAAACAAGG+AGG | - | tig0022164:7947-7966 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATCTGAAACAAA+CGG | + | tig0022164:8090-8109 | Msa1397500:intron | 20.0% |
| !! | ATTAATAAGCAACTTTCTAT+AGG | + | tig0022164:8933-8952 | Msa1397500:intron | 20.0% |
| !!! | TTGTTTGTTAACATCATTTT+AGG | + | tig0022164:9368-9387 | Msa1397500:intron | 20.0% |
| !! | TAGGTTAATCTATTAAAGTT+CGG | - | tig0022164:10856-10875 | None:intergenic | 20.0% |
| ! | AAAGTAAAATCAGTAAGAGA+CGG | - | tig0022164:6375-6394 | None:intergenic | 25.0% |
| !!! | TCAGGTTGAGTTTATATTAA+TGG | + | tig0022164:7470-7489 | Msa1397500:intron | 25.0% |
| !! | CAGGTTGAGTTTATATTAAT+GGG | + | tig0022164:7471-7490 | Msa1397500:intron | 25.0% |
| ! | ATTACCGTGATTACTTTATA+AGG | + | tig0022164:7520-7539 | Msa1397500:CDS | 25.0% |
| ! | GATTCCTTATAAAGTAATCA+CGG | - | tig0022164:7527-7546 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | + | tig0022164:7986-8005 | Msa1397500:intron | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | + | tig0022164:7987-8006 | Msa1397500:intron | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | + | tig0022164:8091-8110 | Msa1397500:intron | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | + | tig0022164:8092-8111 | Msa1397500:intron | 25.0% |
| ! | AACTAAACCAGTTTATATCA+TGG | - | tig0022164:8386-8405 | None:intergenic | 25.0% |
| !! | TGGTTTAGTTATGATTTTCT+AGG | + | tig0022164:8396-8415 | Msa1397500:intron | 25.0% |
| !! | GGTTTAGTTATGATTTTCTA+GGG | + | tig0022164:8397-8416 | Msa1397500:intron | 25.0% |
| ! | CATATCAATGATTATATTCG+TGG | + | tig0022164:8442-8461 | Msa1397500:intron | 25.0% |
| ! | TGTGTTACATTAACTATTAC+CGG | - | tig0022164:8489-8508 | None:intergenic | 25.0% |
| !! | TTTTAAACACATTCAGCATA+AGG | - | tig0022164:8798-8817 | None:intergenic | 25.0% |
| ! | TCATTATATTTGTCTAGACA+AGG | + | tig0022164:8880-8899 | Msa1397500:intron | 25.0% |
| !!! | CAAGCTTTAAATAGATTCAT+TGG | + | tig0022164:8904-8923 | Msa1397500:intron | 25.0% |
| !!! | CATATTACTTTCTAGTTGTT+TGG | + | tig0022164:8956-8975 | Msa1397500:intron | 25.0% |
| ! | GAATAATGAGATAGAAACTA+AGG | - | tig0022164:9317-9336 | None:intergenic | 25.0% |
| ! | TTTCTATCTCATTATTCATC+AGG | + | tig0022164:9320-9339 | Msa1397500:intron | 25.0% |
| ! | CATTATTCATCAGGTTTAAA+AGG | + | tig0022164:9329-9348 | Msa1397500:intron | 25.0% |
| ! | ATTAAATTTCAAGACGAGAT+TGG | - | tig0022164:9627-9646 | None:intergenic | 25.0% |
| !! | TTTTGTCATATGAAGATACA+CGG | + | tig0022164:9810-9829 | Msa1397500:CDS | 25.0% |
| ! | AGAAAATGATGATAGACAAA+AGG | - | tig0022164:9882-9901 | None:intergenic | 25.0% |
| !!! | CCTTCTTTATTTTGAATGAA+GGG | + | tig0022164:9966-9985 | Msa1397500:intron | 25.0% |
| !!! | CTTCTTTATTTTGAATGAAG+GGG | + | tig0022164:9967-9986 | Msa1397500:intron | 25.0% |
| ! | CAACAACAAATTTACACTAA+AGG | - | tig0022164:10014-10033 | None:intergenic | 25.0% |
| ! | GAATATTCACATGTTCTTAT+TGG | + | tig0022164:10281-10300 | Msa1397500:intron | 25.0% |
| ! | ATCTTCTTGGATATTATACA+TGG | - | tig0022164:10365-10384 | None:intergenic | 25.0% |
| ! | AATATCCAAGAAGATACATA+TGG | + | tig0022164:10370-10389 | Msa1397500:intron | 25.0% |
| ! | AATATCCATATGTATCTTCT+TGG | - | tig0022164:10378-10397 | None:intergenic | 25.0% |
| !!! | TAACAATAATTTTGGTCAGT+AGG | - | tig0022164:10465-10484 | None:intergenic | 25.0% |
| ! | TGACCAAAATTATTGTTAAC+AGG | + | tig0022164:10467-10486 | Msa1397500:intron | 25.0% |
| ! | GACCAAAATTATTGTTAACA+GGG | + | tig0022164:10468-10487 | Msa1397500:intron | 25.0% |
| !! | AACCCTGTTAACAATAATTT+TGG | - | tig0022164:10473-10492 | None:intergenic | 25.0% |
| ! | AATTATTGTTAACAGGGTTA+TGG | + | tig0022164:10474-10493 | Msa1397500:intron | 25.0% |
| ! | ATTAGGTATTTCATCATGTA+AGG | - | tig0022164:10624-10643 | None:intergenic | 25.0% |
| !!! | TATTTTAAATGCCCATCATA+AGG | + | tig0022164:10733-10752 | Msa1397500:three_prime_UTR | 25.0% |
| ! | AAATATGAATGCCTTATGAT+GGG | - | tig0022164:10747-10766 | None:intergenic | 25.0% |
| ! | AAAATATGAATGCCTTATGA+TGG | - | tig0022164:10748-10767 | None:intergenic | 25.0% |
| TTGTGAGTAATAGTAAAGAG+AGG | + | tig0022164:6504-6523 | Msa1397500:intron | 30.0% | |
| GATCTATTTACCTCATAAGA+TGG | + | tig0022164:6558-6577 | Msa1397500:intron | 30.0% | |
| CTAAAACAATTGAACTGTTG+AGG | - | tig0022164:6679-6698 | None:intergenic | 30.0% | |
| !!! | AGTTCAATTGTTTTAGTGCT+TGG | + | tig0022164:6683-6702 | Msa1397500:five_prime_UTR | 30.0% |
| ! | CTGAGTACTGTATTCAAAAT+CGG | - | tig0022164:7120-7139 | None:intergenic | 30.0% |
| ! | ACTTTGTTTGCTTTGGATTT+AGG | + | tig0022164:7279-7298 | Msa1397500:intron | 30.0% |
| ! | TGTAGTTATATTAATGGGTG+TGG | + | tig0022164:7436-7455 | Msa1397500:intron | 30.0% |
| GTTGAGTTTATATTAATGGG+TGG | + | tig0022164:7474-7493 | Msa1397500:CDS | 30.0% | |
| CTTGCAAATAATTAAATGGC+AGG | - | tig0022164:7658-7677 | None:intergenic | 30.0% | |
| !!! | CTTTTGCGTAAAGTTTTGAA+TGG | + | tig0022164:7691-7710 | Msa1397500:intron | 30.0% |
| CCCTAAAATGAAAAGCTATT+AGG | - | tig0022164:7990-8009 | None:intergenic | 30.0% | |
| !! | TATAGGGAGAATGGATTATA+TGG | + | tig0022164:8124-8143 | Msa1397500:intron | 30.0% |
| ACCAAGAAAAACTACAAATC+AGG | + | tig0022164:8178-8197 | Msa1397500:intron | 30.0% | |
| TACAAATCAGGCTATTAAGA+TGG | + | tig0022164:8190-8209 | Msa1397500:intron | 30.0% | |
| TAAACCAGTTTATATCATGG+CGG | - | tig0022164:8383-8402 | None:intergenic | 30.0% | |
| ACCTTTGAGTAAACTTTAAC+CGG | + | tig0022164:8467-8486 | Msa1397500:intron | 30.0% | |
| TTGCACTTCTTAAATTTCTC+AGG | + | tig0022164:8531-8550 | Msa1397500:intron | 30.0% | |
| ATATAGGAGAATAGTTTGAC+AGG | - | tig0022164:8772-8791 | None:intergenic | 30.0% | |
| ! | ATTTGAAAGGGGTACAATTA+GGG | - | tig0022164:8986-9005 | None:intergenic | 30.0% |
| ! | TATTTGAAAGGGGTACAATT+AGG | - | tig0022164:8987-9006 | None:intergenic | 30.0% |
| ! | TGCCTAGTTTGTATTTGAAA+GGG | - | tig0022164:8998-9017 | None:intergenic | 30.0% |
| !!! | TTTTCTTTGGCTTTTGCTTT+AGG | + | tig0022164:9077-9096 | Msa1397500:intron | 30.0% |
| AAGAACACATCACATTAGAT+AGG | - | tig0022164:9272-9291 | None:intergenic | 30.0% | |
| !! | ATTGGTTCTAGATAATTACC+TGG | - | tig0022164:9609-9628 | None:intergenic | 30.0% |
| AAGAAATACAGAATGTCTGT+TGG | - | tig0022164:9706-9725 | None:intergenic | 30.0% | |
| GACATTCTGTATTTCTTTGT+AGG | + | tig0022164:9709-9728 | Msa1397500:intron | 30.0% | |
| ATTATATGGCAAATGAAGGT+TGG | + | tig0022164:9780-9799 | Msa1397500:CDS | 30.0% | |
| TTATATGGCAAATGAAGGTT+GGG | + | tig0022164:9781-9800 | Msa1397500:CDS | 30.0% | |
| ATGATGATAGACAAAAGGAT+AGG | - | tig0022164:9877-9896 | None:intergenic | 30.0% | |
| !!! | GCCTTCTTTATTTTGAATGA+AGG | + | tig0022164:9965-9984 | Msa1397500:intron | 30.0% |
| CCCTTCATTCAAAATAAAGA+AGG | - | tig0022164:9969-9988 | None:intergenic | 30.0% | |
| TTTACACTAAAGGTAAGAAC+AGG | - | tig0022164:10004-10023 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGTTGATGAAACA+TGG | + | tig0022164:10025-10044 | Msa1397500:intron | 30.0% |
| !! | ATATCCTTGTTGGTTTGTTA+CGG | + | tig0022164:10084-10103 | Msa1397500:CDS | 30.0% |
| TACAATGAGGAACATGTTAT+TGG | - | tig0022164:10432-10451 | None:intergenic | 30.0% | |
| ACTAAGATAGCTGTAATTTC+TGG | + | tig0022164:10549-10568 | Msa1397500:CDS | 30.0% | |
| CTAAGATAGCTGTAATTTCT+GGG | + | tig0022164:10550-10569 | Msa1397500:CDS | 30.0% | |
| TAAGATAGCTGTAATTTCTG+GGG | + | tig0022164:10551-10570 | Msa1397500:CDS | 30.0% | |
| ! | ATCCCAATTTTCTGTAGTAA+TGG | - | tig0022164:10587-10606 | None:intergenic | 30.0% |
| ACACATGCTACAAAATTACA+TGG | - | tig0022164:10703-10722 | None:intergenic | 30.0% | |
| ! | TGTAATTTTGTAGCATGTGT+TGG | + | tig0022164:10703-10722 | Msa1397500:three_prime_UTR | 30.0% |
| !! | GCATTCATATTTTTGCTCAA+AGG | + | tig0022164:10755-10774 | Msa1397500:three_prime_UTR | 30.0% |
| AGTACTGCAAATTAAGATAC+TGG | + | tig0022164:10806-10825 | Msa1397500:three_prime_UTR | 30.0% | |
| !!! | TGCTTTCAGTTTTAGGGTTT+GGG | - | tig0022164:6241-6260 | None:intergenic | 35.0% |
| TCGAAACAGTGATGAAAGAT+GGG | - | tig0022164:6339-6358 | None:intergenic | 35.0% | |
| GATCATCTAACCATCTTATG+AGG | - | tig0022164:6571-6590 | None:intergenic | 35.0% | |
| !! | AATCTTTCCGTTTTTGCTGT+AGG | + | tig0022164:6602-6621 | Msa1397500:intron | 35.0% |
| !! | ATCTTTCCGTTTTTGCTGTA+GGG | + | tig0022164:6603-6622 | Msa1397500:intron | 35.0% |
| ACAATTCCCTACAGCAAAAA+CGG | - | tig0022164:6612-6631 | None:intergenic | 35.0% | |
| TTTATGAGATAAGTCGACCA+TGG | - | tig0022164:6841-6860 | None:intergenic | 35.0% | |
| ! | ATGGTCGACTTATCTCATAA+AGG | + | tig0022164:6840-6859 | Msa1397500:CDS | 35.0% |
| GCAATCATCTCAACAAGTTT+GGG | - | tig0022164:6930-6949 | None:intergenic | 35.0% | |
| TGCAATCATCTCAACAAGTT+TGG | - | tig0022164:6931-6950 | None:intergenic | 35.0% | |
| ! | TTCGATGACTTTGTTTGCTT+TGG | + | tig0022164:7272-7291 | Msa1397500:intron | 35.0% |
| ATTGATCAGCTTAAGCGTTT+AGG | + | tig0022164:7332-7351 | Msa1397500:CDS | 35.0% | |
| !! | GGTGTGGTTTATTGTTTTTC+AGG | + | tig0022164:7452-7471 | Msa1397500:intron | 35.0% |
| AATCTTCATGATGCTTTGTC+TGG | + | tig0022164:7543-7562 | Msa1397500:CDS | 35.0% | |
| AATTGTCATGCCAATACACT+TGG | - | tig0022164:7622-7641 | None:intergenic | 35.0% | |
| !!! | TTGCGTAAAGTTTTGAATGG+AGG | + | tig0022164:7694-7713 | Msa1397500:intron | 35.0% |
| ! | ACTGGATTTTTATGGGTAGT+AGG | - | tig0022164:7878-7897 | None:intergenic | 35.0% |
| CCATTCTCCCTATAAGATTT+AGG | - | tig0022164:8118-8137 | None:intergenic | 35.0% | |
| CCTAAATCTTATAGGGAGAA+TGG | + | tig0022164:8115-8134 | Msa1397500:intron | 35.0% | |
| !! | GCCTGATTTGTAGTTTTTCT+TGG | - | tig0022164:8182-8201 | None:intergenic | 35.0% |
| !! | CAGGCTATTAAGATGGATTT+TGG | + | tig0022164:8197-8216 | Msa1397500:intron | 35.0% |
| TGATTCACAAGAAGACATTG+CGG | + | tig0022164:8243-8262 | Msa1397500:intron | 35.0% | |
| ACCGGTTAAAGTTTACTCAA+AGG | - | tig0022164:8471-8490 | None:intergenic | 35.0% | |
| GAAGTGCAAAACTTGATAAG+CGG | - | tig0022164:8520-8539 | None:intergenic | 35.0% | |
| CACTTCTTAAATTTCTCAGG+AGG | + | tig0022164:8534-8553 | Msa1397500:intron | 35.0% | |
| ACAGTAACAAACCTTGAAAC+CGG | - | tig0022164:8720-8739 | None:intergenic | 35.0% | |
| ! | ATTCAGCATAAGGAGCATAT+AGG | - | tig0022164:8788-8807 | None:intergenic | 35.0% |
| TTCATTACAACTTTGAGTGC+AGG | - | tig0022164:8838-8857 | None:intergenic | 35.0% | |
| ACCCCTTTCAAATACAAACT+AGG | + | tig0022164:8993-9012 | Msa1397500:intron | 35.0% | |
| ! | GCCTAGTTTGTATTTGAAAG+GGG | - | tig0022164:8997-9016 | None:intergenic | 35.0% |
| ! | CTGCCTAGTTTGTATTTGAA+AGG | - | tig0022164:8999-9018 | None:intergenic | 35.0% |
| TCAAATACAAACTAGGCAGT+AGG | + | tig0022164:9000-9019 | Msa1397500:intron | 35.0% | |
| !! | TTCCAAATGTTGGTGTTGAA+AGG | + | tig0022164:9124-9143 | Msa1397500:CDS | 35.0% |
| !! | TCCAAATGTTGGTGTTGAAA+GGG | + | tig0022164:9125-9144 | Msa1397500:CDS | 35.0% |
| AGGGACTTTCAAAAAACTCT+CGG | - | tig0022164:9164-9183 | None:intergenic | 35.0% | |
| ! | GTTTAAAATGTCGCGATGTT+CGG | + | tig0022164:9566-9585 | Msa1397500:CDS | 35.0% |
| ACTTGTTCGTCGTGATTATA+TGG | + | tig0022164:9766-9785 | Msa1397500:CDS | 35.0% | |
| CGTGATTATATGGCAAATGA+AGG | + | tig0022164:9776-9795 | Msa1397500:CDS | 35.0% | |
| ! | ATTAGCATGACAGTTTTACC+TGG | - | tig0022164:10235-10254 | None:intergenic | 35.0% |
| ! | TGAGTGTAATTGCTGAGTTT+TGG | + | tig0022164:10312-10331 | Msa1397500:intron | 35.0% |
| GAACATGTTATTGGTATCCT+TGG | - | tig0022164:10423-10442 | None:intergenic | 35.0% | |
| !! | ATTTTGGTCAGTAGGTCAAT+TGG | - | tig0022164:10457-10476 | None:intergenic | 35.0% |
| TTATGGTACACTTCTTATGG+AGG | + | tig0022164:10491-10510 | Msa1397500:CDS | 35.0% | |
| ACGCCATTACTACAGAAAAT+TGG | + | tig0022164:10581-10600 | Msa1397500:CDS | 35.0% | |
| CGCCATTACTACAGAAAATT+GGG | + | tig0022164:10582-10601 | Msa1397500:CDS | 35.0% | |
| AAATTGGGATATGAGCTTGA+AGG | + | tig0022164:10597-10616 | Msa1397500:CDS | 35.0% | |
| AATTGGGATATGAGCTTGAA+GGG | + | tig0022164:10598-10617 | Msa1397500:CDS | 35.0% | |
| ! | AGTACTAGCTTACAGAGAAT+GGG | - | tig0022164:10792-10811 | None:intergenic | 35.0% |
| GACAAACTTGCATAACCATA+CGG | - | tig0022164:10905-10924 | None:intergenic | 35.0% | |
| CAAGTTGCAACAATGCTATA+TGG | - | tig0022164:10927-10946 | None:intergenic | 35.0% | |
| !!! | TCAGTTTTAGGGTTTGGGTT+GGG | - | tig0022164:6236-6255 | None:intergenic | 40.0% |
| !!! | TTCAGTTTTAGGGTTTGGGT+TGG | - | tig0022164:6237-6256 | None:intergenic | 40.0% |
| !!! | GTGCTTTCAGTTTTAGGGTT+TGG | - | tig0022164:6242-6261 | None:intergenic | 40.0% |
| GAGAAACTGAATCAGTGATG+GGG | - | tig0022164:6295-6314 | None:intergenic | 40.0% | |
| GGAGAAACTGAATCAGTGAT+GGG | - | tig0022164:6296-6315 | None:intergenic | 40.0% | |
| GAGAAACTTACAGTAGCAGA+GGG | - | tig0022164:6317-6336 | None:intergenic | 40.0% | |
| CTCGAAACAGTGATGAAAGA+TGG | - | tig0022164:6340-6359 | None:intergenic | 40.0% | |
| GGAGTTTACAATCTCTGCAA+TGG | - | tig0022164:6820-6839 | None:intergenic | 40.0% | |
| TGCAGAGATTGTAAACTCCA+TGG | + | tig0022164:6821-6840 | Msa1397500:CDS | 40.0% | |
| !! | GAGCATTGAGATCAACTTTG+TGG | - | tig0022164:6866-6885 | None:intergenic | 40.0% |
| CTTTGACATGACAGCAACAA+CGG | - | tig0022164:7030-7049 | None:intergenic | 40.0% | |
| GCAGTAGACACAAATGTTAC+CGG | - | tig0022164:7081-7100 | None:intergenic | 40.0% | |
| CTGTATTCAAAATCGGAGTC+AGG | - | tig0022164:7113-7132 | None:intergenic | 40.0% | |
| TACAGTACTCAGTCTTACAC+TGG | + | tig0022164:7128-7147 | Msa1397500:CDS | 40.0% | |
| TACCTCTTGTCTGCACATAA+GGG | - | tig0022164:7310-7329 | None:intergenic | 40.0% | |
| TTTAGGTCACAGTGTAGACA+AGG | + | tig0022164:7349-7368 | Msa1397500:CDS | 40.0% | |
| CATAGTGCAACCAAGTGTAT+TGG | + | tig0022164:7609-7628 | Msa1397500:CDS | 40.0% | |
| !!! | TTTTGAATGGAGGAGTGCTT+TGG | + | tig0022164:7704-7723 | Msa1397500:intron | 40.0% |
| !!! | GCTTTGGACTTTTTGGTGTT+TGG | + | tig0022164:7720-7739 | Msa1397500:intron | 40.0% |
| !!! | TTTTTGGTGTTTGGACACGT+GGG | + | tig0022164:7729-7748 | Msa1397500:intron | 40.0% |
| AAACGGGGCCTAAATCTTAT+AGG | + | tig0022164:8107-8126 | Msa1397500:intron | 40.0% | |
| AACGGGGCCTAAATCTTATA+GGG | + | tig0022164:8108-8127 | Msa1397500:intron | 40.0% | |
| !! | AGGGAGAATGGATTATATGG+AGG | + | tig0022164:8127-8146 | Msa1397500:intron | 40.0% |
| CTGCGACAAATGCTTTCTTA+CGG | + | tig0022164:8581-8600 | Msa1397500:CDS | 40.0% | |
| TTCTTACGGTTGTACACGAT+TGG | + | tig0022164:8595-8614 | Msa1397500:CDS | 40.0% | |
| !!! | TGTAGCTGATTGTTTTTGCC+TGG | + | tig0022164:8685-8704 | Msa1397500:CDS | 40.0% |
| ATACAAACTAGGCAGTAGGT+TGG | + | tig0022164:9004-9023 | Msa1397500:intron | 40.0% | |
| ATGCCTGATCTTCCAAATGT+TGG | + | tig0022164:9114-9133 | Msa1397500:CDS | 40.0% | |
| ACACCAACATTTGGAAGATC+AGG | - | tig0022164:9120-9139 | None:intergenic | 40.0% | |
| TCCCTTTCAACACCAACATT+TGG | - | tig0022164:9129-9148 | None:intergenic | 40.0% | |
| TTCCACGTATTACAAGAGTG+GGG | - | tig0022164:9215-9234 | None:intergenic | 40.0% | |
| GTTCCACGTATTACAAGAGT+GGG | - | tig0022164:9216-9235 | None:intergenic | 40.0% | |
| AGTTCCACGTATTACAAGAG+TGG | - | tig0022164:9217-9236 | None:intergenic | 40.0% | |
| ACTCTTGTAATACGTGGAAC+TGG | + | tig0022164:9216-9235 | Msa1397500:CDS | 40.0% | |
| CTCTTGTAATACGTGGAACT+GGG | + | tig0022164:9217-9236 | Msa1397500:CDS | 40.0% | |
| !! | CTTTATGAGCTCTGGAAAAC+TGG | + | tig0022164:9240-9259 | Msa1397500:CDS | 40.0% |
| ! | CATCAGGTTTAAAAGGCATG+TGG | + | tig0022164:9336-9355 | Msa1397500:intron | 40.0% |
| AACTTGTGGACATCATAGCA+AGG | + | tig0022164:9413-9432 | Msa1397500:CDS | 40.0% | |
| ACTCTATAAACACGAGTCCA+TGG | - | tig0022164:9457-9476 | None:intergenic | 40.0% | |
| CTCGTGTTTATAGAGTTCAG+CGG | + | tig0022164:9461-9480 | Msa1397500:CDS | 40.0% | |
| TCGTGTTTATAGAGTTCAGC+GGG | + | tig0022164:9462-9481 | Msa1397500:CDS | 40.0% | |
| GGTTGAGAAAGGGAATCTAA+GGG | + | tig0022164:9513-9532 | Msa1397500:CDS | 40.0% | |
| ATTAGCTCGAATGGAAGACT+TGG | + | tig0022164:9543-9562 | Msa1397500:CDS | 40.0% | |
| TTAGCTCGAATGGAAGACTT+GGG | + | tig0022164:9544-9563 | Msa1397500:CDS | 40.0% | |
| TCACCAGATTAAACCAGAAG+AGG | + | tig0022164:9739-9758 | Msa1397500:CDS | 40.0% | |
| AGGATAGGCACTAATAAGAG+AGG | - | tig0022164:9862-9881 | None:intergenic | 40.0% | |
| GAAGGCAAAATATGCACAAC+AGG | - | tig0022164:9951-9970 | None:intergenic | 40.0% | |
| ATGAAACATGGCCATGACAT+TGG | + | tig0022164:10037-10056 | Msa1397500:intron | 40.0% | |
| ACTACTTGTCCAGAGCTTAT+GGG | + | tig0022164:10128-10147 | Msa1397500:CDS | 40.0% | |
| GTACAGCAGTTCCATAAACA+TGG | - | tig0022164:10178-10197 | None:intergenic | 40.0% | |
| TGTTTATGGAACTGCTGTAC+CGG | + | tig0022164:10178-10197 | Msa1397500:CDS | 40.0% | |
| ! | ATCACAATGCAGCTTTTCCA+AGG | + | tig0022164:10403-10422 | Msa1397500:intron | 40.0% |
| AGGTCAATTGGAGTACAATG+AGG | - | tig0022164:10445-10464 | None:intergenic | 40.0% | |
| GGGTTATGGTACACTTCTTA+TGG | + | tig0022164:10488-10507 | Msa1397500:intron | 40.0% | |
| !! | ATAGCTGTAATTTCTGGGGT+TGG | + | tig0022164:10555-10574 | Msa1397500:CDS | 40.0% |
| TACAGAGAATGGGAGGTAAT+GGG | - | tig0022164:10782-10801 | None:intergenic | 40.0% | |
| TTACAGAGAATGGGAGGTAA+TGG | - | tig0022164:10783-10802 | None:intergenic | 40.0% | |
| ! | CAGTACTAGCTTACAGAGAA+TGG | - | tig0022164:10793-10812 | None:intergenic | 40.0% |
| GTGTATACAACAGCGAATGT+AGG | - | tig0022164:10875-10894 | None:intergenic | 40.0% | |
| !!! | CAGTTTTAGGGTTTGGGTTG+GGG | - | tig0022164:6235-6254 | None:intergenic | 45.0% |
| ! | GGACGGTGCTTTCAGTTTTA+GGG | - | tig0022164:6247-6266 | None:intergenic | 45.0% |
| GGGAGAAACTGAATCAGTGA+TGG | - | tig0022164:6297-6316 | None:intergenic | 45.0% | |
| GGAGAAACTTACAGTAGCAG+AGG | - | tig0022164:6318-6337 | None:intergenic | 45.0% | |
| GTGCTTGGAGTTATCGAGAA+TGG | + | tig0022164:6698-6717 | Msa1397500:exon | 45.0% | |
| ATCGAGAATGGCAACTGCAA+TGG | + | tig0022164:6710-6729 | Msa1397500:exon | 45.0% | |
| CAAAAAAGTCACCACGTCCT+GGG | + | tig0022164:6742-6761 | Msa1397500:CDS | 45.0% | |
| CACGTGCTTCTTCTTCACTA+AGG | - | tig0022164:6791-6810 | None:intergenic | 45.0% | |
| AACAACGGCTATTCCAGATG+CGG | - | tig0022164:7015-7034 | None:intergenic | 45.0% | |
| GTAGACACAAATGTTACCGG+TGG | - | tig0022164:7078-7097 | None:intergenic | 45.0% | |
| AACATTTGTGTCTACTGCCC+TGG | + | tig0022164:7083-7102 | Msa1397500:CDS | 45.0% | |
| AACCCTTATGTGCAGACAAG+AGG | + | tig0022164:7305-7324 | Msa1397500:CDS | 45.0% | |
| CTACCTCTTGTCTGCACATA+AGG | - | tig0022164:7311-7330 | None:intergenic | 45.0% | |
| CTTATGTGCAGACAAGAGGT+AGG | + | tig0022164:7309-7328 | Msa1397500:CDS | 45.0% | |
| GTCACAGTGTAGACAAGGTT+TGG | + | tig0022164:7354-7373 | Msa1397500:intron | 45.0% | |
| TGGAACTTTCATGTCCCTTC+CGG | + | tig0022164:7494-7513 | Msa1397500:CDS | 45.0% | |
| AAGTAATCACGGTAATCCGC+CGG | - | tig0022164:7516-7535 | None:intergenic | 45.0% | |
| ACACTTGGTTGCACTATGCT+CGG | - | tig0022164:7607-7626 | None:intergenic | 45.0% | |
| !!! | GAGGAGTGCTTTGGACTTTT+TGG | + | tig0022164:7713-7732 | Msa1397500:intron | 45.0% |
| !!! | CTTTTTGGTGTTTGGACACG+TGG | + | tig0022164:7728-7747 | Msa1397500:intron | 45.0% |
| !!! | TTTTGGTGTTTGGACACGTG+GGG | + | tig0022164:7730-7749 | Msa1397500:intron | 45.0% |
| TGGGGAGAAGACTTGTAGTA+AGG | + | tig0022164:7748-7767 | Msa1397500:intron | 45.0% | |
| GGGGAGAAGACTTGTAGTAA+GGG | + | tig0022164:7749-7768 | Msa1397500:intron | 45.0% | |
| ACTGCCGCCATGATATAAAC+TGG | + | tig0022164:8376-8395 | Msa1397500:intron | 45.0% | |
| AGGAGGCCAGATTATTGTCT+TGG | + | tig0022164:8551-8570 | Msa1397500:intron | 45.0% | |
| GGAGGCCAGATTATTGTCTT+GGG | + | tig0022164:8552-8571 | Msa1397500:intron | 45.0% | |
| TGAGGCCCAAGACAATAATC+TGG | - | tig0022164:8560-8579 | None:intergenic | 45.0% | |
| !! | CGTAAGAAAGCATTTGTCGC+AGG | - | tig0022164:8583-8602 | None:intergenic | 45.0% |
| GGTTGTACACGATTGGAGAT+TGG | + | tig0022164:8602-8621 | Msa1397500:CDS | 45.0% | |
| CAACATCCTCGTAAGTGCTT+TGG | - | tig0022164:8631-8650 | None:intergenic | 45.0% | |
| GTTGCTCGTGACACTAATAG+AGG | + | tig0022164:8647-8666 | Msa1397500:CDS | 45.0% | |
| ! | TTTTGCCTGGCTAAAGATGC+CGG | + | tig0022164:8698-8717 | Msa1397500:CDS | 45.0% |
| GTGACAACGTGCAGATTGAT+AGG | - | tig0022164:8743-8762 | None:intergenic | 45.0% | |
| !! | TGTTGGTGTTGAAAGGGACA+TGG | + | tig0022164:9131-9150 | Msa1397500:CDS | 45.0% |
| ! | AGTCCCTTGTTTAGAGCAGA+TGG | + | tig0022164:9177-9196 | Msa1397500:CDS | 45.0% |
| ! | GTCCCTTGTTTAGAGCAGAT+GGG | + | tig0022164:9178-9197 | Msa1397500:CDS | 45.0% |
| ! | AGCCCATCTGCTCTAAACAA+GGG | - | tig0022164:9183-9202 | None:intergenic | 45.0% |
| ! | AAGCCCATCTGCTCTAAACA+AGG | - | tig0022164:9184-9203 | None:intergenic | 45.0% |
| TACCCCACTCTTGTAATACG+TGG | + | tig0022164:9210-9229 | Msa1397500:CDS | 45.0% | |
| TTATCCACCTGAGCAACTTG+TGG | + | tig0022164:9399-9418 | Msa1397500:CDS | 45.0% | |
| ATGATGTCCACAAGTTGCTC+AGG | - | tig0022164:9409-9428 | None:intergenic | 45.0% | |
| CATAGCAAGGATCCTTGCAA+TGG | + | tig0022164:9426-9445 | Msa1397500:CDS | 45.0% | |
| CTATAAACACGAGTCCATGG+AGG | - | tig0022164:9454-9473 | None:intergenic | 45.0% | |
| GGGTTGAGAAAGGGAATCTA+AGG | + | tig0022164:9512-9531 | Msa1397500:CDS | 45.0% | |
| GGAGTTAGCATTAGCTCGAA+TGG | + | tig0022164:9534-9553 | Msa1397500:CDS | 45.0% | |
| !! | CCACCTCTTCTGGTTTAATC+TGG | - | tig0022164:9745-9764 | None:intergenic | 45.0% |
| CCAGATTAAACCAGAAGAGG+TGG | + | tig0022164:9742-9761 | Msa1397500:CDS | 45.0% | |
| GTCATATGAAGATACACGGC+AGG | + | tig0022164:9814-9833 | Msa1397500:CDS | 45.0% | |
| TAAGAGAGGCTGAGGAAAGA+AGG | - | tig0022164:9848-9867 | None:intergenic | 45.0% | |
| ! | GTGTGAGTCTAGTTTGTAGC+TGG | + | tig0022164:9917-9936 | Msa1397500:intron | 45.0% |
| AGACAGCACAACCAATGTCA+TGG | - | tig0022164:10051-10070 | None:intergenic | 45.0% | |
| CTTGAGCAGGATATCCTTGT+TGG | + | tig0022164:10074-10093 | Msa1397500:intron | 45.0% | |
| TTGTTACGGCTGCGAAAATG+TGG | + | tig0022164:10098-10117 | Msa1397500:CDS | 45.0% | |
| ! | GCTCTGGACAAGTAGTGTTA+CGG | - | tig0022164:10124-10143 | None:intergenic | 45.0% |
| CACTACTTGTCCAGAGCTTA+TGG | + | tig0022164:10127-10146 | Msa1397500:CDS | 45.0% | |
| GAACACTTACCCATAAGCTC+TGG | - | tig0022164:10140-10159 | None:intergenic | 45.0% | |
| GTTCGTGAGCTCCATGTTTA+TGG | + | tig0022164:10164-10183 | Msa1397500:CDS | 45.0% | |
| TTCTGACAAGCTACAACACC+AGG | + | tig0022164:10214-10233 | Msa1397500:CDS | 45.0% | |
| TGGTACACTTCTTATGGAGG+AGG | + | tig0022164:10494-10513 | Msa1397500:CDS | 45.0% | |
| ! | ACTAGCTTACAGAGAATGGG+AGG | - | tig0022164:10789-10808 | None:intergenic | 45.0% |
| ! | GGGACGGTGCTTTCAGTTTT+AGG | - | tig0022164:6248-6267 | None:intergenic | 50.0% |
| GTGAGCGATAGTGTGAGGAA+GGG | - | tig0022164:6268-6287 | None:intergenic | 50.0% | |
| AGTGAGCGATAGTGTGAGGA+AGG | - | tig0022164:6269-6288 | None:intergenic | 50.0% | |
| GAAGAGTGAGCGATAGTGTG+AGG | - | tig0022164:6273-6292 | None:intergenic | 50.0% | |
| AACAGCAACTGCTGCAGCAA+TGG | - | tig0022164:6445-6464 | None:intergenic | 50.0% | |
| GAGAATGGCAACTGCAATGG+TGG | + | tig0022164:6713-6732 | Msa1397500:exon | 50.0% | |
| GCAAAAAAGTCACCACGTCC+TGG | + | tig0022164:6741-6760 | Msa1397500:CDS | 50.0% | |
| !! | AAAGGAGGCTTTGAAGGCCA+CGG | + | tig0022164:6765-6784 | Msa1397500:CDS | 50.0% |
| CTTCTTCTTCACTAAGGCCG+TGG | - | tig0022164:6785-6804 | None:intergenic | 50.0% | |
| CACGTGAGAGGCCATACTTA+CGG | - | tig0022164:6905-6924 | None:intergenic | 50.0% | |
| TTTACCAGACTCCGAACGAG+AGG | + | tig0022164:6953-6972 | Msa1397500:CDS | 50.0% | |
| GGGAAGAAGAACCTCTCGTT+CGG | - | tig0022164:6967-6986 | None:intergenic | 50.0% | |
| ! | TATTCCAGATGCGGTTCGGA+CGG | - | tig0022164:7006-7025 | None:intergenic | 50.0% |
| GACACAAATGTTACCGGTGG+TGG | - | tig0022164:7075-7094 | None:intergenic | 50.0% | |
| ATTTGTGTCTACTGCCCTGG+CGG | + | tig0022164:7086-7105 | Msa1397500:CDS | 50.0% | |
| CGAATTGCACGCATACTGGT+AGG | - | tig0022164:7161-7180 | None:intergenic | 50.0% | |
| TGCTCGAATTGCACGCATAC+TGG | - | tig0022164:7165-7184 | None:intergenic | 50.0% | |
| GTATGCGTGCAATTCGAGCA+AGG | + | tig0022164:7165-7184 | Msa1397500:CDS | 50.0% | |
| AACTTTCATGTCCCTTCCGG+CGG | + | tig0022164:7497-7516 | Msa1397500:CDS | 50.0% | |
| CACCTCTGCCAATGTAGAAG+AGG | + | tig0022164:7569-7588 | Msa1397500:CDS | 50.0% | |
| CTCTGCCAATGTAGAAGAGG+CGG | + | tig0022164:7572-7591 | Msa1397500:CDS | 50.0% | |
| !! | GAAAGCATTTGTCGCAGGTG+AGG | - | tig0022164:8578-8597 | None:intergenic | 50.0% |
| ! | TGGAGTCCAAAGCACTTACG+AGG | + | tig0022164:8622-8641 | Msa1397500:CDS | 50.0% |
| TGAAACCGGCATCTTTAGCC+AGG | - | tig0022164:8706-8725 | None:intergenic | 50.0% | |
| !! | GGCTAAAGATGCCGGTTTCA+AGG | + | tig0022164:8706-8725 | Msa1397500:CDS | 50.0% |
| CAATCTGCACGTTGTCACAG+CGG | + | tig0022164:8745-8764 | Msa1397500:intron | 50.0% | |
| ! | GAACTGGGCTTTATGAGCTC+TGG | + | tig0022164:9232-9251 | Msa1397500:CDS | 50.0% |
| !! | ATGAGCTCTGGAAAACTGGC+AGG | + | tig0022164:9244-9263 | Msa1397500:CDS | 50.0% |
| ATGTCCACAAGTTGCTCAGG+TGG | - | tig0022164:9406-9425 | None:intergenic | 50.0% | |
| TCCTTGCAATGGTACCTCCA+TGG | + | tig0022164:9437-9456 | Msa1397500:CDS | 50.0% | |
| !! | TCCATGGAGGTACCATTGCA+AGG | - | tig0022164:9441-9460 | None:intergenic | 50.0% |
| GCGGGATATTCCAATGCCTT+TGG | + | tig0022164:9480-9499 | Msa1397500:CDS | 50.0% | |
| ! | CAATGCCTTTGGTGACCTCT+GGG | + | tig0022164:9491-9510 | Msa1397500:CDS | 50.0% |
| ! | AATGCCTTTGGTGACCTCTG+GGG | + | tig0022164:9492-9511 | Msa1397500:CDS | 50.0% |
| !! | TGACCTCTGGGGTTGAGAAA+GGG | + | tig0022164:9503-9522 | Msa1397500:CDS | 50.0% |
| ATTCCCTTTCTCAACCCCAG+AGG | - | tig0022164:9509-9528 | None:intergenic | 50.0% | |
| TACCTGGATTCCAGCTTCTC+TGG | - | tig0022164:9593-9612 | None:intergenic | 50.0% | |
| CGAACAAGTTCCACCTCTTC+TGG | - | tig0022164:9755-9774 | None:intergenic | 50.0% | |
| GGCACTAATAAGAGAGGCTG+AGG | - | tig0022164:9856-9875 | None:intergenic | 50.0% | |
| ! | GTCTAGTTTGTAGCTGGCAC+TGG | + | tig0022164:9923-9942 | Msa1397500:intron | 50.0% |
| TGTGCTGTCTTCTCTTGAGC+AGG | + | tig0022164:10061-10080 | Msa1397500:intron | 50.0% | |
| GCAGCCGTAACAAACCAACA+AGG | - | tig0022164:10091-10110 | None:intergenic | 50.0% | |
| !! | GAACTGCTGTACCGGTTCAT+GGG | + | tig0022164:10186-10205 | Msa1397500:CDS | 50.0% |
| TTCTTATGGAGGAGGCTGAG+CGG | + | tig0022164:10502-10521 | Msa1397500:CDS | 50.0% | |
| GTATACACGAGCTGACCGTA+TGG | + | tig0022164:10887-10906 | Msa1397500:three_prime_UTR | 50.0% | |
| GCGATAGTGTGAGGAAGGGA+CGG | - | tig0022164:6264-6283 | None:intergenic | 55.0% | |
| AAGTCACCACGTCCTGGGAA+AGG | + | tig0022164:6747-6766 | Msa1397500:CDS | 55.0% | |
| CCTTCAAAGCCTCCTTTCCC+AGG | - | tig0022164:6762-6781 | None:intergenic | 55.0% | |
| ! | CCTGGGAAAGGAGGCTTTGA+AGG | + | tig0022164:6759-6778 | Msa1397500:CDS | 55.0% |
| TCTGCTGCGTGCCGTAAGTA+TGG | + | tig0022164:6891-6910 | Msa1397500:CDS | 55.0% | |
| CAAGTTTGGGTGCACGTGAG+AGG | - | tig0022164:6917-6936 | None:intergenic | 55.0% | |
| AGAACCTCTCGTTCGGAGTC+TGG | - | tig0022164:6960-6979 | None:intergenic | 55.0% | |
| !! | ACGGGTTTGGCTCGGAGTTT+GGG | - | tig0022164:6987-7006 | None:intergenic | 55.0% |
| ! | ATTCCAGATGCGGTTCGGAC+GGG | - | tig0022164:7005-7024 | None:intergenic | 55.0% |
| CGGCTATTCCAGATGCGGTT+CGG | - | tig0022164:7010-7029 | None:intergenic | 55.0% | |
| GCAATGTGAGGGCAACGATG+AGG | - | tig0022164:7053-7072 | None:intergenic | 55.0% | |
| ! | TACCGGTGGTGGCAATGTGA+GGG | - | tig0022164:7064-7083 | None:intergenic | 55.0% |
| ! | TTACCGGTGGTGGCAATGTG+AGG | - | tig0022164:7065-7084 | None:intergenic | 55.0% |
| GCGTGCAATTCGAGCAAGGT+AGG | + | tig0022164:7169-7188 | Msa1397500:intron | 55.0% | |
| ATCACGGTAATCCGCCGGAA+GGG | - | tig0022164:7511-7530 | None:intergenic | 55.0% | |
| AATCACGGTAATCCGCCGGA+AGG | - | tig0022164:7512-7531 | None:intergenic | 55.0% | |
| CGCCTCTTCTACATTGGCAG+AGG | - | tig0022164:7574-7593 | None:intergenic | 55.0% | |
| CGTCACCGCCTCTTCTACAT+TGG | - | tig0022164:7580-7599 | None:intergenic | 55.0% | |
| ! | CCAGAGGTCACCAAAGGCAT+TGG | - | tig0022164:9493-9512 | None:intergenic | 55.0% |
| ! | CCAATGCCTTTGGTGACCTC+TGG | + | tig0022164:9490-9509 | Msa1397500:CDS | 55.0% |
| TCAACCCCAGAGGTCACCAA+AGG | - | tig0022164:9499-9518 | None:intergenic | 55.0% | |
| !! | GTGACCTCTGGGGTTGAGAA+AGG | + | tig0022164:9502-9521 | Msa1397500:CDS | 55.0% |
| GATGTTCGGACCAGAGAAGC+TGG | + | tig0022164:9580-9599 | Msa1397500:CDS | 55.0% | |
| GACCAGAGAAGCTGGAATCC+AGG | + | tig0022164:9588-9607 | Msa1397500:CDS | 55.0% | |
| !! | GGAACTGCTGTACCGGTTCA+TGG | + | tig0022164:10185-10204 | Msa1397500:CDS | 55.0% |
| TCAGAATCCCGCCCATGAAC+CGG | - | tig0022164:10200-10219 | None:intergenic | 55.0% | |
| GTACTCGTAACCCCCCTCTC+TGG | + | tig0022164:6199-6218 | Msa1397500:five_prime_UTR | 60.0% | |
| TGCAGTCGTACCAGAGAGGG+GGG | - | tig0022164:6212-6231 | None:intergenic | 60.0% | |
| GTGCAGTCGTACCAGAGAGG+GGG | - | tig0022164:6213-6232 | None:intergenic | 60.0% | |
| GGTGCAGTCGTACCAGAGAG+GGG | - | tig0022164:6214-6233 | None:intergenic | 60.0% | |
| GGGTGCAGTCGTACCAGAGA+GGG | - | tig0022164:6215-6234 | None:intergenic | 60.0% | |
| GGCAACTGCAATGGTGGCAG+AGG | + | tig0022164:6719-6738 | Msa1397500:CDS | 60.0% | |
| TCACCACGTCCTGGGAAAGG+AGG | + | tig0022164:6750-6769 | Msa1397500:CDS | 60.0% | |
| AAGCCTCCTTTCCCAGGACG+TGG | - | tig0022164:6756-6775 | None:intergenic | 60.0% | |
| !! | GACGGGTTTGGCTCGGAGTT+TGG | - | tig0022164:6988-7007 | None:intergenic | 60.0% |
| ! | AGATGCGGTTCGGACGGGTT+TGG | - | tig0022164:7000-7019 | None:intergenic | 60.0% |
| AAACCCGTCCGAACCGCATC+TGG | + | tig0022164:6999-7018 | Msa1397500:CDS | 60.0% | |
| TGCCCTCACATTGCCACCAC+CGG | + | tig0022164:7059-7078 | Msa1397500:CDS | 60.0% | |
| AATCGGAGTCAGGACCGCCA+GGG | - | tig0022164:7103-7122 | None:intergenic | 60.0% | |
| AAATCGGAGTCAGGACCGCC+AGG | - | tig0022164:7104-7123 | None:intergenic | 60.0% | |
| !! | CTGCTGTACCGGTTCATGGG+CGG | + | tig0022164:10189-10208 | Msa1397500:CDS | 60.0% |
| !! | TGCTGTACCGGTTCATGGGC+GGG | + | tig0022164:10190-10209 | Msa1397500:CDS | 60.0% |
| GGGGTGCAGTCGTACCAGAG+AGG | - | tig0022164:6216-6235 | None:intergenic | 65.0% | |
| ! | CGGTTCGGACGGGTTTGGCT+CGG | - | tig0022164:6995-7014 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022164 | gene | 6192 | 10947 | 6192 | ID=Msa1397500;Name=Msa1397500 |
| tig0022164 | mRNA | 6192 | 10947 | 6192 | ID=Msa1397500-mRNA-1;Parent=Msa1397500;Name=Msa1397500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=227|1|1|1|0.88|0.8|10|300|563 |
| tig0022164 | exon | 6192 | 6325 | 6192 | ID=Msa1397500-mRNA-1:exon:16107;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 6624 | 7186 | 6624 | ID=Msa1397500-mRNA-1:exon:16108;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 7301 | 7370 | 7301 | ID=Msa1397500-mRNA-1:exon:16109;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 7474 | 7646 | 7474 | ID=Msa1397500-mRNA-1:exon:16110;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 8553 | 8727 | 8553 | ID=Msa1397500-mRNA-1:exon:16111;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 9099 | 9265 | 9099 | ID=Msa1397500-mRNA-1:exon:16112;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 9390 | 9609 | 9390 | ID=Msa1397500-mRNA-1:exon:16113;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 9731 | 9835 | 9731 | ID=Msa1397500-mRNA-1:exon:16114;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 10083 | 10235 | 10083 | ID=Msa1397500-mRNA-1:exon:16115;Parent=Msa1397500-mRNA-1 |
| tig0022164 | exon | 10489 | 10947 | 10489 | ID=Msa1397500-mRNA-1:exon:16116;Parent=Msa1397500-mRNA-1 |
| tig0022164 | five_prime_UTR | 6192 | 6325 | 6192 | ID=Msa1397500-mRNA-1:five_prime_utr;Parent=Msa1397500-mRNA-1 |
| tig0022164 | five_prime_UTR | 6624 | 6716 | 6624 | ID=Msa1397500-mRNA-1:five_prime_utr;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 6717 | 7186 | 6717 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 7301 | 7370 | 7301 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 7474 | 7646 | 7474 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 8553 | 8727 | 8553 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 9099 | 9265 | 9099 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 9390 | 9609 | 9390 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 9731 | 9835 | 9731 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 10083 | 10235 | 10083 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | CDS | 10489 | 10647 | 10489 | ID=Msa1397500-mRNA-1:cds;Parent=Msa1397500-mRNA-1 |
| tig0022164 | three_prime_UTR | 10648 | 10947 | 10648 | ID=Msa1397500-mRNA-1:three_prime_utr;Parent=Msa1397500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
