Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398280 | XP_013449694.1 | 99.022 | 409 | 3 | 1 | 1 | 409 | 1 | 408 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398280 | sp|Q9ZT91|EFTM_ARATH | 84.988 | 413 | 53 | 5 | 4 | 409 | 3 | 413 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398280 | A0A072U201 | 99.022 | 409 | 3 | 1 | 1 | 409 | 1 | 408 | 0.0 | 829 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1136880 | Msa1398280 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398280 | MtrunA17_Chr7g0259481 | 99.022 | 409 | 3 | 1 | 1 | 409 | 1 | 408 | 0.0 | 829 |
| Msa1398280 | MtrunA17_Chr3g0116821 | 60.664 | 422 | 131 | 7 | 5 | 409 | 45 | 448 | 6.66e-156 | 449 |
| Msa1398280 | MtrunA17_Chr2g0287231 | 90.233 | 215 | 21 | 0 | 62 | 276 | 14 | 228 | 1.32e-143 | 408 |
| Msa1398280 | MtrunA17_Chr3g0114371 | 65.104 | 192 | 44 | 3 | 219 | 409 | 63 | 232 | 2.48e-76 | 238 |
| Msa1398280 | MtrunA17_Chr3g0114371 | 77.612 | 67 | 11 | 1 | 55 | 121 | 1 | 63 | 3.19e-18 | 84.3 |
| Msa1398280 | MtrunA17_Chr2g0287241 | 74.150 | 147 | 35 | 2 | 265 | 409 | 19 | 164 | 1.43e-71 | 223 |
| Msa1398280 | MtrunA17_Chr6g0458111 | 33.236 | 343 | 187 | 10 | 60 | 369 | 3 | 336 | 1.20e-43 | 157 |
| Msa1398280 | MtrunA17_Chr6g0458091 | 33.236 | 343 | 187 | 10 | 60 | 369 | 3 | 336 | 1.20e-43 | 157 |
| Msa1398280 | MtrunA17_Chr1g0200121 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 1.87e-43 | 157 |
| Msa1398280 | MtrunA17_Chr1g0200071 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 2.34e-43 | 157 |
| Msa1398280 | MtrunA17_Chr1g0200091 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 2.34e-43 | 157 |
| Msa1398280 | MtrunA17_Chr4g0005781 | 32.653 | 343 | 189 | 10 | 60 | 369 | 3 | 336 | 4.18e-43 | 156 |
| Msa1398280 | MtrunA17_Chr1g0193591 | 32.565 | 347 | 194 | 10 | 60 | 375 | 3 | 340 | 7.66e-41 | 150 |
| Msa1398280 | MtrunA17_Chr1g0150331 | 32.565 | 347 | 187 | 12 | 60 | 369 | 3 | 339 | 1.17e-38 | 144 |
| Msa1398280 | MtrunA17_Chr1g0156421 | 29.211 | 380 | 231 | 10 | 59 | 406 | 2 | 375 | 3.09e-36 | 137 |
| Msa1398280 | MtrunA17_Chr8g0380091 | 30.702 | 342 | 195 | 10 | 61 | 368 | 272 | 605 | 1.36e-35 | 138 |
| Msa1398280 | MtrunA17_Chr1g0204031 | 33.123 | 317 | 173 | 11 | 60 | 348 | 3 | 308 | 4.23e-34 | 134 |
| Msa1398280 | MtrunA17_Chr8g0336511 | 31.153 | 321 | 182 | 9 | 59 | 348 | 67 | 379 | 1.62e-33 | 129 |
| Msa1398280 | MtrunA17_Chr8g0340771 | 30.530 | 321 | 187 | 7 | 60 | 350 | 3 | 317 | 3.82e-32 | 126 |
| Msa1398280 | MtrunA17_Chr8g0392641 | 29.799 | 349 | 185 | 14 | 62 | 368 | 144 | 474 | 3.21e-27 | 113 |
| Msa1398280 | MtrunA17_Chr5g0415391 | 30.282 | 284 | 171 | 10 | 102 | 367 | 22 | 296 | 4.46e-27 | 111 |
| Msa1398280 | MtrunA17_Chr6g0483121 | 29.091 | 385 | 218 | 16 | 62 | 409 | 89 | 455 | 1.11e-26 | 111 |
| Msa1398280 | MtrunA17_Chr2g0318291 | 32.828 | 198 | 106 | 6 | 62 | 235 | 7 | 201 | 1.03e-25 | 103 |
| Msa1398280 | MtrunA17_Chr1g0196251 | 28.319 | 339 | 186 | 10 | 62 | 373 | 6 | 314 | 1.26e-22 | 98.6 |
| Msa1398280 | MtrunA17_Chr4g0040791 | 30.100 | 299 | 187 | 9 | 17 | 300 | 4 | 295 | 1.52e-21 | 97.1 |
| Msa1398280 | MtrunA17_Chr1g0204041 | 31.737 | 167 | 86 | 3 | 65 | 206 | 8 | 171 | 5.96e-19 | 84.0 |
| Msa1398280 | MtrunA17_Chr1g0173551 | 26.842 | 380 | 232 | 16 | 2 | 357 | 16 | 373 | 8.53e-18 | 85.5 |
| Msa1398280 | MtrunA17_Chr2g0319341 | 32.735 | 223 | 123 | 9 | 144 | 348 | 1 | 214 | 9.80e-18 | 84.7 |
| Msa1398280 | MtrunA17_Chr2g0315521 | 27.083 | 288 | 125 | 11 | 65 | 299 | 33 | 288 | 1.48e-15 | 78.2 |
| Msa1398280 | MtrunA17_Chr2g0312061 | 26.207 | 290 | 125 | 11 | 65 | 299 | 33 | 288 | 2.48e-15 | 77.4 |
| Msa1398280 | MtrunA17_Chr8g0340371 | 31.169 | 154 | 85 | 3 | 60 | 192 | 3 | 156 | 3.53e-15 | 74.7 |
| Msa1398280 | MtrunA17_Chr1g0156411 | 31.159 | 138 | 73 | 3 | 65 | 180 | 12 | 149 | 6.60e-14 | 68.9 |
| Msa1398280 | MtrunA17_Chr2g0298371 | 28.700 | 223 | 115 | 8 | 144 | 348 | 1 | 197 | 1.48e-13 | 70.9 |
| Msa1398280 | MtrunA17_Chr3g0130991 | 29.046 | 241 | 138 | 8 | 66 | 297 | 85 | 301 | 6.15e-13 | 70.5 |
| Msa1398280 | MtrunA17_Chr2g0312621 | 29.386 | 228 | 138 | 6 | 70 | 297 | 502 | 706 | 6.85e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398280 | AT4G02930.1 | 84.988 | 413 | 53 | 5 | 4 | 409 | 3 | 413 | 0.0 | 676 |
| Msa1398280 | AT4G20360.1 | 61.229 | 423 | 135 | 7 | 4 | 409 | 25 | 435 | 1.43e-160 | 461 |
| Msa1398280 | AT4G20360.2 | 61.229 | 423 | 135 | 7 | 4 | 409 | 25 | 435 | 1.43e-160 | 461 |
| Msa1398280 | AT1G07920.1 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT1G07940.4 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT1G07940.1 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT1G07940.2 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT1G07940.3 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT5G60390.3 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT5G60390.1 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT5G60390.2 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT1G07930.1 | 32.945 | 343 | 188 | 10 | 60 | 369 | 3 | 336 | 3.80e-43 | 157 |
| Msa1398280 | AT5G10630.1 | 29.607 | 331 | 198 | 7 | 52 | 352 | 227 | 552 | 9.74e-34 | 133 |
| Msa1398280 | AT5G10630.5 | 29.607 | 331 | 198 | 7 | 52 | 352 | 228 | 553 | 9.78e-34 | 133 |
| Msa1398280 | AT5G10630.2 | 29.607 | 331 | 198 | 7 | 52 | 352 | 228 | 553 | 9.78e-34 | 133 |
| Msa1398280 | AT5G10630.4 | 29.607 | 331 | 198 | 7 | 52 | 352 | 303 | 628 | 1.01e-33 | 134 |
| Msa1398280 | AT5G10630.3 | 29.607 | 331 | 198 | 7 | 52 | 352 | 298 | 623 | 1.25e-33 | 133 |
| Msa1398280 | AT1G07930.2 | 33.721 | 258 | 135 | 7 | 60 | 286 | 3 | 255 | 7.06e-33 | 127 |
| Msa1398280 | AT1G18070.1 | 30.030 | 333 | 168 | 14 | 62 | 350 | 99 | 410 | 5.43e-27 | 113 |
| Msa1398280 | AT1G18070.2 | 30.030 | 333 | 168 | 14 | 62 | 350 | 99 | 410 | 5.43e-27 | 113 |
| Msa1398280 | AT1G18070.3 | 29.070 | 344 | 168 | 15 | 62 | 350 | 99 | 421 | 5.06e-24 | 104 |
| Msa1398280 | AT2G31060.2 | 32.155 | 283 | 163 | 9 | 66 | 329 | 61 | 333 | 1.36e-21 | 97.4 |
| Msa1398280 | AT2G31060.3 | 32.056 | 287 | 162 | 10 | 66 | 329 | 61 | 337 | 4.39e-21 | 95.9 |
| Msa1398280 | AT2G18720.1 | 25.672 | 335 | 188 | 11 | 65 | 353 | 39 | 358 | 9.92e-20 | 91.3 |
| Msa1398280 | AT2G18720.2 | 25.672 | 335 | 188 | 11 | 65 | 353 | 39 | 358 | 9.92e-20 | 91.3 |
| Msa1398280 | AT4G18330.2 | 26.549 | 339 | 182 | 12 | 65 | 353 | 40 | 361 | 1.35e-18 | 87.8 |
| Msa1398280 | AT4G18330.1 | 28.455 | 246 | 129 | 9 | 65 | 280 | 40 | 268 | 7.46e-16 | 77.8 |
| Msa1398280 | AT1G04170.2 | 26.374 | 273 | 146 | 8 | 65 | 299 | 34 | 289 | 4.02e-15 | 77.4 |
| Msa1398280 | AT1G04170.1 | 26.374 | 273 | 146 | 8 | 65 | 299 | 34 | 289 | 4.02e-15 | 77.4 |
| Msa1398280 | AT5G13650.1 | 25.150 | 334 | 223 | 11 | 29 | 350 | 48 | 366 | 6.22e-15 | 77.4 |
| Msa1398280 | AT2G18720.3 | 26.923 | 260 | 155 | 9 | 116 | 353 | 21 | 267 | 1.01e-14 | 75.5 |
| Msa1398280 | AT5G13650.2 | 25.926 | 297 | 194 | 10 | 66 | 350 | 85 | 367 | 2.26e-14 | 75.5 |
| Msa1398280 | AT5G08650.2 | 30.126 | 239 | 138 | 9 | 66 | 297 | 88 | 304 | 5.34e-13 | 71.2 |
| Msa1398280 | AT5G08650.1 | 30.126 | 239 | 138 | 9 | 66 | 297 | 88 | 304 | 5.75e-13 | 71.2 |
Find 95 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCCAGAAAATGTTAAAA+TGG | 0.264941 | tig0022246:+103981 | Msa1398280:CDS |
| GAACAAGGAATCATCAAAAT+TGG | 0.282024 | tig0022246:+103145 | Msa1398280:CDS |
| TGAAGATGTATTCTCAATTC+AGG | 0.301803 | tig0022246:+102757 | Msa1398280:CDS |
| GTTGTTAGAGCTTGTAGAAA+TGG | 0.312590 | tig0022246:+102405 | Msa1398280:CDS |
| CATGTTAACGTCGGAACTAT+TGG | 0.338907 | tig0022246:+100371 | Msa1398280:CDS |
| CAAGGATACCACCGTCCATT+TGG | 0.339574 | tig0022246:-102149 | None:intergenic |
| TTGACCTTCTACAAGTTTCC+AGG | 0.348867 | tig0022246:+102578 | Msa1398280:CDS |
| CCTCTGAAAACAACAGTTAC+TGG | 0.352891 | tig0022246:+103461 | Msa1398280:CDS |
| ATTCTTCCTCCTCCATTCCT+TGG | 0.362758 | tig0022246:+100230 | Msa1398280:CDS |
| TGCTCTTTAGTTTGAGGCAT+TGG | 0.370324 | tig0022246:-102192 | None:intergenic |
| AATGCTGAACCTCTAATGAT+AGG | 0.371728 | tig0022246:-102611 | None:intergenic |
| TGGTGATGAAGTTGAGGTTT+TGG | 0.379753 | tig0022246:+103165 | Msa1398280:CDS |
| AGAATATGCTCTTTAGTTTG+AGG | 0.379765 | tig0022246:-102198 | None:intergenic |
| AATCGTAGAAATGAAGGTTT+GGG | 0.382934 | tig0022246:-100070 | None:intergenic |
| AATTGAGAATACATCTTCAA+TGG | 0.404677 | tig0022246:-102753 | None:intergenic |
| TCAAGCTGGCGAACAGGGTC+AGG | 0.406901 | tig0022246:-102713 | None:intergenic |
| GTTTGAGGCATTGGTCCATC+AGG | 0.416974 | tig0022246:-102183 | None:intergenic |
| CAAGGTACAAATGAGGAGAT+TGG | 0.421220 | tig0022246:+102644 | Msa1398280:CDS |
| GTGAGAGGTGATTGAGAAAT+CGG | 0.424813 | tig0022246:-100193 | None:intergenic |
| ATTTCTACGATTCGCTTCAA+TGG | 0.426643 | tig0022246:+100081 | Msa1398280:exon |
| TATCTCTGCTTCAAATCTCT+TGG | 0.432334 | tig0022246:-103875 | None:intergenic |
| CTTCCTCCTCCATTCCTTGG+TGG | 0.434975 | tig0022246:+100233 | Msa1398280:CDS |
| GAATCGTAGAAATGAAGGTT+TGG | 0.438409 | tig0022246:-100071 | None:intergenic |
| CACTAACTGCTGCAATCACC+AGG | 0.446674 | tig0022246:+100417 | Msa1398280:CDS |
| AAGGATACCACCGTCCATTT+GGG | 0.446849 | tig0022246:-102148 | None:intergenic |
| GATGATATCCCTATCATTAG+AGG | 0.453307 | tig0022246:+102602 | Msa1398280:CDS |
| CAAAATTGGTGATGAAGTTG+AGG | 0.481713 | tig0022246:+103159 | Msa1398280:CDS |
| TGAAGACATTCAACGTGGTC+AGG | 0.482701 | tig0022246:+103640 | Msa1398280:CDS |
| GATTACTGGAGCTGCCCAAA+TGG | 0.484093 | tig0022246:+102134 | Msa1398280:CDS |
| TGTGGAATTGAGAGGAGAAG+AGG | 0.484183 | tig0022246:-100153 | None:intergenic |
| GAAGCGAATCGTAGAAATGA+AGG | 0.496889 | tig0022246:-100076 | None:intergenic |
| AAATGAGGAGATTGGAAGAA+AGG | 0.499059 | tig0022246:+102652 | Msa1398280:CDS |
| TTGTAGGTGCTTGCTGATGA+AGG | 0.509437 | tig0022246:+100557 | Msa1398280:intron |
| TCAGCATTGTCTGCTTTACA+AGG | 0.510440 | tig0022246:+102626 | Msa1398280:CDS |
| CATTCCTTGGTGGAGATCCA+TGG | 0.511576 | tig0022246:+100243 | Msa1398280:CDS |
| GGCGTTTGATGAAATTGATA+AGG | 0.514036 | tig0022246:+100595 | Msa1398280:CDS |
| ATGCTGAACCTCTAATGATA+GGG | 0.516366 | tig0022246:-102610 | None:intergenic |
| ATCCCCTGGAAACTTGTAGA+AGG | 0.518821 | tig0022246:-102582 | None:intergenic |
| ATTGAGAATACATCTTCAAT+GGG | 0.521499 | tig0022246:-102752 | None:intergenic |
| TGAGATGTTCAAGAAGATGT+TGG | 0.521796 | tig0022246:+103487 | Msa1398280:CDS |
| TCTTCAATGGGCATCAAGAA+AGG | 0.524319 | tig0022246:-102740 | None:intergenic |
| TTAACATAATCAGCATGTCC+AGG | 0.527973 | tig0022246:-100946 | None:intergenic |
| CTTGTTGTATCTGCACCTGA+TGG | 0.528400 | tig0022246:+102168 | Msa1398280:CDS |
| ACTATTGGACACGTGGATCA+CGG | 0.528486 | tig0022246:+100386 | Msa1398280:CDS |
| CACCTGAAGAGAAGAAAAGA+GGG | 0.532525 | tig0022246:+100618 | Msa1398280:CDS |
| TTGTAGGCTGGTGATAATGT+TGG | 0.534723 | tig0022246:+103593 | Msa1398280:intron |
| TTCAAGAAGATGTTGGATCA+AGG | 0.539587 | tig0022246:+103494 | Msa1398280:CDS |
| GAAGATGTTGGATCAAGGAC+AGG | 0.545197 | tig0022246:+103499 | Msa1398280:CDS |
| ATATGTACTCACAAAGGATG+AGG | 0.545850 | tig0022246:+103879 | Msa1398280:CDS |
| TCTACAAGCTCTAACAACTC+TGG | 0.547509 | tig0022246:-102400 | None:intergenic |
| GCACCTGAAGAGAAGAAAAG+AGG | 0.556131 | tig0022246:+100617 | Msa1398280:CDS |
| TTGAGGACTGCTGATGTCAC+CGG | 0.560650 | tig0022246:+103949 | Msa1398280:CDS |
| TATGCTCATGTTGACTGCCC+TGG | 0.562571 | tig0022246:+100928 | Msa1398280:CDS |
| GGACGAGGAACAGTTGCTAC+TGG | 0.563419 | tig0022246:+103115 | Msa1398280:CDS |
| AAGAGGGATTACAATTGCTA+CGG | 0.564494 | tig0022246:+100634 | Msa1398280:CDS |
| TGACCTTCTACAAGTTTCCA+GGG | 0.568787 | tig0022246:+102579 | Msa1398280:CDS |
| CGTTCTGGTGAAAGTAGCCA+TGG | 0.573938 | tig0022246:-100260 | None:intergenic |
| GAGAGAAGTGTGGAATTGAG+AGG | 0.576888 | tig0022246:-100161 | None:intergenic |
| GGAAGAATGAGTAGCGTCAT+CGG | 0.581580 | tig0022246:-100215 | None:intergenic |
| TACTCACAAAGGATGAGGGT+GGG | 0.581890 | tig0022246:+103884 | Msa1398280:CDS |
| TTGAGTATGAGACTGCGAAA+AGG | 0.587605 | tig0022246:+100902 | Msa1398280:CDS |
| AATTGAGAGGAGAAGAGGAA+AGG | 0.587918 | tig0022246:-100148 | None:intergenic |
| CATGGATCTCCACCAAGGAA+TGG | 0.590261 | tig0022246:-100242 | None:intergenic |
| GTCAGGAATGTATTCATCAA+CGG | 0.597205 | tig0022246:-102696 | None:intergenic |
| GAAAAGGTCATTGCTAAACC+CGG | 0.597744 | tig0022246:+103820 | Msa1398280:intron |
| GCTACTGGTCGTGTTGAACA+AGG | 0.600283 | tig0022246:+103130 | Msa1398280:CDS |
| TGTAGGTGCTTGCTGATGAA+GGG | 0.600394 | tig0022246:+100558 | Msa1398280:intron |
| CGTCGGAACTATTGGACACG+TGG | 0.600647 | tig0022246:+100379 | Msa1398280:CDS |
| TGTCTTCACGTTTCAGACCA+CGG | 0.601798 | tig0022246:-103625 | None:intergenic |
| TGCTTTACAAGGTACAAATG+AGG | 0.604944 | tig0022246:+102637 | Msa1398280:CDS |
| ATGATAGGGATATCATCCCC+TGG | 0.605677 | tig0022246:-102596 | None:intergenic |
| TAACATAATCAGCATGTCCA+GGG | 0.614232 | tig0022246:-100945 | None:intergenic |
| GGTGATTGCAGCAGTTAGTG+TGG | 0.615191 | tig0022246:-100414 | None:intergenic |
| ACTGGAGCTGCCCAAATGGA+CGG | 0.617245 | tig0022246:+102138 | Msa1398280:CDS |
| TCTCCACCAAGGAATGGAGG+AGG | 0.620202 | tig0022246:-100236 | None:intergenic |
| GGATCTCCACCAAGGAATGG+AGG | 0.622567 | tig0022246:-100239 | None:intergenic |
| CATCAGGTGCAGATACAACA+AGG | 0.636841 | tig0022246:-102167 | None:intergenic |
| GACCTTCTACAAGTTTCCAG+GGG | 0.639890 | tig0022246:+102580 | Msa1398280:CDS |
| TATGTACTCACAAAGGATGA+GGG | 0.639988 | tig0022246:+103880 | Msa1398280:CDS |
| TGAGTAGCGTCATCGGTGAG+AGG | 0.643356 | tig0022246:-100208 | None:intergenic |
| AATGTTGGTCTTCTTCTCCG+TGG | 0.651935 | tig0022246:+103608 | Msa1398280:CDS |
| AGAGATATATGTACTCACAA+AGG | 0.660869 | tig0022246:+103873 | Msa1398280:CDS |
| GTACTCACAAAGGATGAGGG+TGG | 0.668081 | tig0022246:+103883 | Msa1398280:CDS |
| GTGAACGAGTGAGAGAAGTG+TGG | 0.678699 | tig0022246:-100171 | None:intergenic |
| ATCGTAGAAATGAAGGTTTG+GGG | 0.683413 | tig0022246:-100069 | None:intergenic |
| ATAGTTCCGACGTTAACATG+AGG | 0.685603 | tig0022246:-100368 | None:intergenic |
| TCGTAGAAATGAAGGTTTGG+GGG | 0.700032 | tig0022246:-100068 | None:intergenic |
| GCAGTCCTCAAGTAAAACTG+AGG | 0.704069 | tig0022246:-103955 | None:intergenic |
| CTTGTAGAAATGGAGCTCCG+TGG | 0.705529 | tig0022246:+102415 | Msa1398280:CDS |
| TGAAGGGAAAGCAAAAGCTG+TGG | 0.710762 | tig0022246:+100574 | Msa1398280:CDS |
| AGAAAGCCTCATGTTAACGT+CGG | 0.718585 | tig0022246:+100362 | Msa1398280:intron |
| ACTAACTGCTGCAATCACCA+GGG | 0.718624 | tig0022246:+100418 | Msa1398280:CDS |
| GGAGCTGCCCAAATGGACGG+TGG | 0.721733 | tig0022246:+102141 | Msa1398280:CDS |
| GTAGCCATGGATCTCCACCA+AGG | 0.736526 | tig0022246:-100247 | None:intergenic |
| AAACGTGAAGACATTCAACG+TGG | 0.815986 | tig0022246:+103635 | Msa1398280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTATTTTTTTTA+AGG | + | tig0022246:103093-103112 | Msa1398280:intron | 0.0% |
| !!! | TTTTTAATTATTTTTTTTAA+GGG | + | tig0022246:103094-103113 | Msa1398280:intron | 0.0% |
| !! | TAGAAATTAAATACATTTAT+TGG | - | tig0022246:101000-101019 | None:intergenic | 10.0% |
| !! | TTTAATTATAAATAATCCTT+GGG | - | tig0022246:101220-101239 | None:intergenic | 10.0% |
| !!! | TTAAAAACTCATTAATTTTT+AGG | - | tig0022246:101617-101636 | None:intergenic | 10.0% |
| !!! | AAGGTATTAAAAAAATAAAA+AGG | + | tig0022246:101872-101891 | Msa1398280:intron | 10.0% |
| !! | ATTATTTAATAAATGCATAA+CGG | - | tig0022246:102094-102113 | None:intergenic | 10.0% |
| !! | TTAACATCAAAACAATAAAT+CGG | - | tig0022246:100460-100479 | None:intergenic | 15.0% |
| !!! | TAATTGATTGTTTAATTTTC+AGG | + | tig0022246:100873-100892 | Msa1398280:intron | 15.0% |
| !!! | TTTTGATGTTAAAATATGAT+TGG | + | tig0022246:101087-101106 | Msa1398280:intron | 15.0% |
| !! | CTTTAATTATAAATAATCCT+TGG | - | tig0022246:101221-101240 | None:intergenic | 15.0% |
| !! | CAAGGATTATTTATAATTAA+AGG | + | tig0022246:101219-101238 | Msa1398280:intron | 15.0% |
| !!! | GATTTGATTAAGTTTTATTT+TGG | + | tig0022246:101305-101324 | Msa1398280:intron | 15.0% |
| !! | TATTAAAATTGAAAATGCAA+AGG | + | tig0022246:101795-101814 | Msa1398280:intron | 15.0% |
| !!! | TTTTAATACCTTACATATTA+TGG | - | tig0022246:101864-101883 | None:intergenic | 15.0% |
| !!! | TTATATATTTTATTTGCTGT+TGG | + | tig0022246:103319-103338 | Msa1398280:intron | 15.0% |
| !!! | ATTAATGTTTTATTCTTGTT+TGG | + | tig0022246:103347-103366 | Msa1398280:intron | 15.0% |
| !! | TAGTGTATATTAAACTAATA+TGG | + | tig0022246:103559-103578 | Msa1398280:intron | 15.0% |
| !!! | ATTGATTGATTTGATTTTGT+AGG | + | tig0022246:100541-100560 | Msa1398280:intron | 20.0% |
| !!! | AGTTTTTAAGATTTATGAAG+CGG | + | tig0022246:101181-101200 | Msa1398280:intron | 20.0% |
| !! | GGATTATTTATAATTAAAGG+TGG | + | tig0022246:101222-101241 | Msa1398280:intron | 20.0% |
| !! | TTATTTATAATTAAAGGTGG+TGG | + | tig0022246:101225-101244 | Msa1398280:intron | 20.0% |
| !!! | TTTTCAATTTTAATAGAGGA+TGG | - | tig0022246:101790-101809 | None:intergenic | 20.0% |
| !!! | TGCATTTTCAATTTTAATAG+AGG | - | tig0022246:101794-101813 | None:intergenic | 20.0% |
| !! | AATTCTAACCATAATATGTA+AGG | + | tig0022246:101853-101872 | Msa1398280:intron | 20.0% |
| !!! | AACAATAAATGCAAACTTTT+AGG | + | tig0022246:102261-102280 | Msa1398280:intron | 20.0% |
| !! | TTCAAAATTTAACAATTACG+AGG | - | tig0022246:102523-102542 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTAATCATCTATC+TGG | + | tig0022246:102547-102566 | Msa1398280:intron | 20.0% |
| !!! | AAAGGCCATTTTAAAATTAA+TGG | + | tig0022246:102670-102689 | Msa1398280:CDS | 20.0% |
| !!! | ATAACCATTTTAACATTTTC+TGG | - | tig0022246:103988-104007 | None:intergenic | 20.0% |
| !!! | TTGAAATTTTAAGTGAAGTG+AGG | + | tig0022246:100480-100499 | Msa1398280:intron | 25.0% |
| !! | AACAACAAGTTTTACACTTA+CGG | + | tig0022246:100816-100835 | Msa1398280:intron | 25.0% |
| !!! | CATCCTTGTTTGTTTTTTTA+TGG | + | tig0022246:100841-100860 | Msa1398280:intron | 25.0% |
| ! | TTGCCATAAAAAAACAAACA+AGG | - | tig0022246:100847-100866 | None:intergenic | 25.0% |
| !! | ATGCTGATTATGTTAAAGTA+AGG | + | tig0022246:100953-100972 | Msa1398280:intron | 25.0% |
| ! | GTTAAAGTAAGGTTTACATT+TGG | + | tig0022246:100964-100983 | Msa1398280:intron | 25.0% |
| !!! | TTTACTGTTTTTTGACCTAT+TGG | + | tig0022246:101042-101061 | Msa1398280:intron | 25.0% |
| !!! | TTTTTTGACCTATTGGAAAT+AGG | + | tig0022246:101049-101068 | Msa1398280:intron | 25.0% |
| ! | GGAATGAGCTTAAATAATTT+AGG | + | tig0022246:101246-101265 | Msa1398280:intron | 25.0% |
| ! | TTAATCAAATCTCTATGACA+TGG | - | tig0022246:101296-101315 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTATTTTGGTCGT+CGG | + | tig0022246:101312-101331 | Msa1398280:intron | 25.0% |
| ! | TATATATACACCGAACATTA+TGG | + | tig0022246:101645-101664 | Msa1398280:intron | 25.0% |
| ! | AATTCTCAGTATTGTCAATT+TGG | + | tig0022246:101750-101769 | Msa1398280:intron | 25.0% |
| ! | ATTCTCAGTATTGTCAATTT+GGG | + | tig0022246:101751-101770 | Msa1398280:intron | 25.0% |
| !! | TTTTTGCAGAATATGATTAC+TGG | + | tig0022246:102120-102139 | Msa1398280:intron | 25.0% |
| !!! | GGCATCCATTAATTTTAAAA+TGG | - | tig0022246:102678-102697 | None:intergenic | 25.0% |
| ! | ATTGAGAATACATCTTCAAT+GGG | - | tig0022246:102755-102774 | None:intergenic | 25.0% |
| ! | AATTGAGAATACATCTTCAA+TGG | - | tig0022246:102756-102775 | None:intergenic | 25.0% |
| ! | TCGTATTTAATTCAATGAGT+TGG | - | tig0022246:102831-102850 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTTTAAGGGACG+AGG | + | tig0022246:103100-103119 | Msa1398280:intron | 25.0% |
| !!! | TTTTATTCTTGTTTGGACAT+TGG | + | tig0022246:103354-103373 | Msa1398280:intron | 25.0% |
| !! | TATGGATTTTCACATTTTGT+AGG | + | tig0022246:103577-103596 | Msa1398280:intron | 25.0% |
| AATCGTAGAAATGAAGGTTT+GGG | - | tig0022246:100073-100092 | None:intergenic | 30.0% | |
| !! | TTTTAAGTGAAGTGAGGATT+TGG | + | tig0022246:100486-100505 | Msa1398280:intron | 30.0% |
| !! | ATTTGGTGTTGGGTTAATTA+GGG | + | tig0022246:100503-100522 | Msa1398280:intron | 30.0% |
| TTATAAACGTAGCACTGTAA+AGG | + | tig0022246:100772-100791 | Msa1398280:intron | 30.0% | |
| TATAAACGTAGCACTGTAAA+GGG | + | tig0022246:100773-100792 | Msa1398280:intron | 30.0% | |
| TCTCAATACCTATTTCCAAT+AGG | - | tig0022246:101060-101079 | None:intergenic | 30.0% | |
| TGGAAATAAAATGAGCATAG+CGG | + | tig0022246:101403-101422 | Msa1398280:intron | 30.0% | |
| !! | AGAATATGCTCTTTAGTTTG+AGG | - | tig0022246:102201-102220 | None:intergenic | 30.0% |
| ATATCAACAGAATACCTACT+TGG | - | tig0022246:102233-102252 | None:intergenic | 30.0% | |
| AAGTAGGTATTCTGTTGATA+TGG | + | tig0022246:102232-102251 | Msa1398280:intron | 30.0% | |
| TATTTGTACATGAATTGTGC+AGG | + | tig0022246:102324-102343 | Msa1398280:intron | 30.0% | |
| ! | TTTAAAAAGCACACAAGAGA+TGG | - | tig0022246:102358-102377 | None:intergenic | 30.0% |
| GTTCATTCTTATCATGAAGA+GGG | - | tig0022246:102478-102497 | None:intergenic | 30.0% | |
| TGAAGATGTATTCTCAATTC+AGG | + | tig0022246:102757-102776 | Msa1398280:CDS | 30.0% | |
| GTATTCTCAATTCAGGTAAA+AGG | + | tig0022246:102764-102783 | Msa1398280:intron | 30.0% | |
| GATAACAAAAAAAGAACCCA+TGG | - | tig0022246:102790-102809 | None:intergenic | 30.0% | |
| CATTGAATTAAATACGAGCT+CGG | + | tig0022246:102834-102853 | Msa1398280:intron | 30.0% | |
| !! | TTACAGTACATGTTAGTCTT+GGG | + | tig0022246:102868-102887 | Msa1398280:intron | 30.0% |
| TATTGAATAGATGCTGCATT+GGG | - | tig0022246:102936-102955 | None:intergenic | 30.0% | |
| ATATTGAATAGATGCTGCAT+TGG | - | tig0022246:102937-102956 | None:intergenic | 30.0% | |
| AGCATCTATTCAATATCAGT+TGG | + | tig0022246:102941-102960 | Msa1398280:intron | 30.0% | |
| ACATTCTGGATATGAAATCA+AGG | - | tig0022246:103056-103075 | None:intergenic | 30.0% | |
| GAACAAGGAATCATCAAAAT+TGG | + | tig0022246:103145-103164 | Msa1398280:CDS | 30.0% | |
| ! | ATGTTGATTGAGTCATTTAC+TGG | + | tig0022246:103201-103220 | Msa1398280:intron | 30.0% |
| TGAGTCATTTACTGGATTTA+TGG | + | tig0022246:103209-103228 | Msa1398280:intron | 30.0% | |
| ATAAATTCCTTGCATTGCAA+TGG | + | tig0022246:103402-103421 | Msa1398280:intron | 30.0% | |
| ! | TCCTAAAACTAAGTTTTTCC+TGG | + | tig0022246:103429-103448 | Msa1398280:intron | 30.0% |
| !! | ACCAGGAAAAACTTAGTTTT+AGG | - | tig0022246:103433-103452 | None:intergenic | 30.0% |
| ! | AAAACTAAGTTTTTCCTGGT+AGG | + | tig0022246:103433-103452 | Msa1398280:intron | 30.0% |
| ! | AAACTAAGTTTTTCCTGGTA+GGG | + | tig0022246:103434-103453 | Msa1398280:intron | 30.0% |
| AGAGATATATGTACTCACAA+AGG | + | tig0022246:103873-103892 | Msa1398280:CDS | 30.0% | |
| GTTGCCAGAAAATGTTAAAA+TGG | + | tig0022246:103981-104000 | Msa1398280:CDS | 30.0% | |
| ATCGTAGAAATGAAGGTTTG+GGG | - | tig0022246:100072-100091 | None:intergenic | 35.0% | |
| GAATCGTAGAAATGAAGGTT+TGG | - | tig0022246:100074-100093 | None:intergenic | 35.0% | |
| ATTTCTACGATTCGCTTCAA+TGG | + | tig0022246:100081-100100 | Msa1398280:exon | 35.0% | |
| TTAGAGAGAGAATTACGTTC+TGG | - | tig0022246:100278-100297 | None:intergenic | 35.0% | |
| GAGAAATCAAATACTTACCC+TGG | - | tig0022246:100438-100457 | None:intergenic | 35.0% | |
| !! | GATTTGGTGTTGGGTTAATT+AGG | + | tig0022246:100502-100521 | Msa1398280:intron | 35.0% |
| TTGGGTTAATTAGGGTTTAG+AGG | + | tig0022246:100511-100530 | Msa1398280:intron | 35.0% | |
| GGCGTTTGATGAAATTGATA+AGG | + | tig0022246:100595-100614 | Msa1398280:CDS | 35.0% | |
| AAGAGGGATTACAATTGCTA+CGG | + | tig0022246:100634-100653 | Msa1398280:CDS | 35.0% | |
| GAGATCCACAAATATCTATG+TGG | - | tig0022246:100750-100769 | None:intergenic | 35.0% | |
| ATAAACGTAGCACTGTAAAG+GGG | + | tig0022246:100774-100793 | Msa1398280:intron | 35.0% | |
| TAACATAATCAGCATGTCCA+GGG | - | tig0022246:100948-100967 | None:intergenic | 35.0% | |
| TTAACATAATCAGCATGTCC+AGG | - | tig0022246:100949-100968 | None:intergenic | 35.0% | |
| ! | ATTAGCTTAATGACGCAAGA+TGG | + | tig0022246:101155-101174 | Msa1398280:intron | 35.0% |
| !! | CGGTTGAATATTTTTACCCA+AGG | + | tig0022246:101201-101220 | Msa1398280:intron | 35.0% |
| TAAAAGGAGAGGATTGTGTT+AGG | - | tig0022246:101341-101360 | None:intergenic | 35.0% | |
| GTAGTAAGACTTGACAAGAT+AGG | + | tig0022246:101450-101469 | Msa1398280:intron | 35.0% | |
| AGACTTGACAAGATAGGATT+AGG | + | tig0022246:101456-101475 | Msa1398280:intron | 35.0% | |
| TATCTACTCTCCTTACTCTA+CGG | - | tig0022246:101548-101567 | None:intergenic | 35.0% | |
| AAGGAGAGTAGATAAGATGA+AGG | + | tig0022246:101554-101573 | Msa1398280:intron | 35.0% | |
| AGGAGAGTAGATAAGATGAA+GGG | + | tig0022246:101555-101574 | Msa1398280:intron | 35.0% | |
| CAATAAGTATGATGGCTACA+TGG | - | tig0022246:101682-101701 | None:intergenic | 35.0% | |
| GTAGCCATCATACTTATTGT+TGG | + | tig0022246:101683-101702 | Msa1398280:intron | 35.0% | |
| CCATCATACTTATTGTTGGT+GGG | + | tig0022246:101687-101706 | Msa1398280:intron | 35.0% | |
| ! | ATTGTTGGTGGGATAAGAAT+CGG | + | tig0022246:101698-101717 | Msa1398280:intron | 35.0% |
| AGCATGCCTTAATGTCTTAT+CGG | + | tig0022246:101966-101985 | Msa1398280:intron | 35.0% | |
| AAACACCCGATAAGACATTA+AGG | - | tig0022246:101975-101994 | None:intergenic | 35.0% | |
| ! | TCCTCATCAAATAGTGTTGA+TGG | - | tig0022246:102046-102065 | None:intergenic | 35.0% |
| GTTGTTAGAGCTTGTAGAAA+TGG | + | tig0022246:102405-102424 | Msa1398280:CDS | 35.0% | |
| CTTATCATGAAGAGGGAAAA+GGG | - | tig0022246:102471-102490 | None:intergenic | 35.0% | |
| TCTTATCATGAAGAGGGAAA+AGG | - | tig0022246:102472-102491 | None:intergenic | 35.0% | |
| GGTTCATTCTTATCATGAAG+AGG | - | tig0022246:102479-102498 | None:intergenic | 35.0% | |
| GATGATATCCCTATCATTAG+AGG | + | tig0022246:102602-102621 | Msa1398280:CDS | 35.0% | |
| ATGCTGAACCTCTAATGATA+GGG | - | tig0022246:102613-102632 | None:intergenic | 35.0% | |
| AATGCTGAACCTCTAATGAT+AGG | - | tig0022246:102614-102633 | None:intergenic | 35.0% | |
| TGCTTTACAAGGTACAAATG+AGG | + | tig0022246:102637-102656 | Msa1398280:CDS | 35.0% | |
| AAATGAGGAGATTGGAAGAA+AGG | + | tig0022246:102652-102671 | Msa1398280:CDS | 35.0% | |
| GTCAGGAATGTATTCATCAA+CGG | - | tig0022246:102699-102718 | None:intergenic | 35.0% | |
| ! | CTTACAGTACATGTTAGTCT+TGG | + | tig0022246:102867-102886 | Msa1398280:intron | 35.0% |
| !! | TACAGTACATGTTAGTCTTG+GGG | + | tig0022246:102869-102888 | Msa1398280:intron | 35.0% |
| !! | GTTTAGCCTTGAAATTGACA+CGG | + | tig0022246:102910-102929 | Msa1398280:intron | 35.0% |
| AGAGACAACAATGTTTGTCA+AGG | - | tig0022246:102975-102994 | None:intergenic | 35.0% | |
| !! | CAAAATTGGTGATGAAGTTG+AGG | + | tig0022246:103159-103178 | Msa1398280:CDS | 35.0% |
| CTTTCAGTATATTAAGCACG+AGG | - | tig0022246:103257-103276 | None:intergenic | 35.0% | |
| TGAGATGTTCAAGAAGATGT+TGG | + | tig0022246:103487-103506 | Msa1398280:CDS | 35.0% | |
| TTCAAGAAGATGTTGGATCA+AGG | + | tig0022246:103494-103513 | Msa1398280:CDS | 35.0% | |
| ! | GATTTTCACATTTTGTAGGC+TGG | + | tig0022246:103581-103600 | Msa1398280:intron | 35.0% |
| TGCAACAGTAACTAACAAAG+AGG | - | tig0022246:103689-103708 | None:intergenic | 35.0% | |
| !!! | GACGTTGTCTTGTTTTGAAA+AGG | + | tig0022246:103804-103823 | Msa1398280:intron | 35.0% |
| TATCTCTGCTTCAAATCTCT+TGG | - | tig0022246:103860-103879 | None:intergenic | 35.0% | |
| ATATGTACTCACAAAGGATG+AGG | + | tig0022246:103879-103898 | Msa1398280:CDS | 35.0% | |
| TATGTACTCACAAAGGATGA+GGG | + | tig0022246:103880-103899 | Msa1398280:CDS | 35.0% | |
| ! | ATAGACCTCAGTTTTACTTG+AGG | + | tig0022246:103932-103951 | Msa1398280:CDS | 35.0% |
| TCGTAGAAATGAAGGTTTGG+GGG | - | tig0022246:100071-100090 | None:intergenic | 40.0% | |
| GAAGCGAATCGTAGAAATGA+AGG | - | tig0022246:100079-100098 | None:intergenic | 40.0% | |
| AATTGAGAGGAGAAGAGGAA+AGG | - | tig0022246:100151-100170 | None:intergenic | 40.0% | |
| GTGAGAGGTGATTGAGAAAT+CGG | - | tig0022246:100196-100215 | None:intergenic | 40.0% | |
| AGAAAGCCTCATGTTAACGT+CGG | + | tig0022246:100362-100381 | Msa1398280:intron | 40.0% | |
| ATAGTTCCGACGTTAACATG+AGG | - | tig0022246:100371-100390 | None:intergenic | 40.0% | |
| CATGTTAACGTCGGAACTAT+TGG | + | tig0022246:100371-100390 | Msa1398280:CDS | 40.0% | |
| !! | TGAAGTGAGGATTTGGTGTT+GGG | + | tig0022246:100493-100512 | Msa1398280:intron | 40.0% |
| CACCTGAAGAGAAGAAAAGA+GGG | + | tig0022246:100618-100637 | Msa1398280:CDS | 40.0% | |
| ! | ATCCCTCTTTTCTTCTCTTC+AGG | - | tig0022246:100623-100642 | None:intergenic | 40.0% |
| GGATTACAATTGCTACGGTT+CGG | + | tig0022246:100639-100658 | Msa1398280:intron | 40.0% | |
| TCACGCCACATAGATATTTG+TGG | + | tig0022246:100742-100761 | Msa1398280:intron | 40.0% | |
| TTGAGTATGAGACTGCGAAA+AGG | + | tig0022246:100902-100921 | Msa1398280:CDS | 40.0% | |
| !!! | ATTAGTTTTTTACCGCCCCA+AGG | - | tig0022246:101382-101401 | None:intergenic | 40.0% |
| GGGGCGGTAAAAAACTAATA+TGG | + | tig0022246:101383-101402 | Msa1398280:intron | 40.0% | |
| TCGACTTATCGTAGAAAAGC+TGG | + | tig0022246:101480-101499 | Msa1398280:intron | 40.0% | |
| ACTTATCGTAGAAAAGCTGG+TGG | + | tig0022246:101483-101502 | Msa1398280:intron | 40.0% | |
| GAGAAAATACCCGTAGAGTA+AGG | + | tig0022246:101535-101554 | Msa1398280:intron | 40.0% | |
| ATCTACTCTCCTTACTCTAC+GGG | - | tig0022246:101547-101566 | None:intergenic | 40.0% | |
| TCAAACGACGCCATAATGTT+CGG | - | tig0022246:101658-101677 | None:intergenic | 40.0% | |
| GCCATCATACTTATTGTTGG+TGG | + | tig0022246:101686-101705 | Msa1398280:intron | 40.0% | |
| CCCACCAACAATAAGTATGA+TGG | - | tig0022246:101690-101709 | None:intergenic | 40.0% | |
| ! | TTTGCTGTGTCTCAGATAAC+AGG | + | tig0022246:101917-101936 | Msa1398280:intron | 40.0% |
| GCATGCCTTAATGTCTTATC+GGG | + | tig0022246:101967-101986 | Msa1398280:intron | 40.0% | |
| GCCATCAACACTATTTGATG+AGG | + | tig0022246:102042-102061 | Msa1398280:intron | 40.0% | |
| TTTGATGAGGAATGCTTCTG+CGG | + | tig0022246:102055-102074 | Msa1398280:intron | 40.0% | |
| !! | TGCTCTTTAGTTTGAGGCAT+TGG | - | tig0022246:102195-102214 | None:intergenic | 40.0% |
| CCTTAGAAGCAAGGAAGTAA+CGG | - | tig0022246:102291-102310 | None:intergenic | 40.0% | |
| GAATGTTGACCTTAGAAGCA+AGG | - | tig0022246:102300-102319 | None:intergenic | 40.0% | |
| TGTACATGAATTGTGCAGGT+TGG | + | tig0022246:102328-102347 | Msa1398280:intron | 40.0% | |
| ! | TCTACAAGCTCTAACAACTC+TGG | - | tig0022246:102403-102422 | None:intergenic | 40.0% |
| TCTTAGAGAAAAACCCACCA+CGG | - | tig0022246:102435-102454 | None:intergenic | 40.0% | |
| TTGACCTTCTACAAGTTTCC+AGG | + | tig0022246:102578-102597 | Msa1398280:CDS | 40.0% | |
| TGACCTTCTACAAGTTTCCA+GGG | + | tig0022246:102579-102598 | Msa1398280:CDS | 40.0% | |
| TCAGCATTGTCTGCTTTACA+AGG | + | tig0022246:102626-102645 | Msa1398280:CDS | 40.0% | |
| CAAGGTACAAATGAGGAGAT+TGG | + | tig0022246:102644-102663 | Msa1398280:CDS | 40.0% | |
| !! | TCAAGAAAGGCTTTTCAAGC+TGG | - | tig0022246:102730-102749 | None:intergenic | 40.0% |
| TCTTCAATGGGCATCAAGAA+AGG | - | tig0022246:102743-102762 | None:intergenic | 40.0% | |
| TCAATTCAGGTAAAAGGCCA+TGG | + | tig0022246:102770-102789 | Msa1398280:intron | 40.0% | |
| CAATTCAGGTAAAAGGCCAT+GGG | + | tig0022246:102771-102790 | Msa1398280:intron | 40.0% | |
| !! | TGGTGATGAAGTTGAGGTTT+TGG | + | tig0022246:103165-103184 | Msa1398280:CDS | 40.0% |
| ! | GGTGATGAAGTTGAGGTTTT+GGG | + | tig0022246:103166-103185 | Msa1398280:CDS | 40.0% |
| GAGGAATGACGAGAATTCAA+GGG | - | tig0022246:103238-103257 | None:intergenic | 40.0% | |
| !!! | CCAGTAACTGTTGTTTTCAG+AGG | - | tig0022246:103464-103483 | None:intergenic | 40.0% |
| ! | CCTCTGAAAACAACAGTTAC+TGG | + | tig0022246:103461-103480 | Msa1398280:CDS | 40.0% |
| ! | TTGTAGGCTGGTGATAATGT+TGG | + | tig0022246:103593-103612 | Msa1398280:intron | 40.0% |
| AAACGTGAAGACATTCAACG+TGG | + | tig0022246:103635-103654 | Msa1398280:CDS | 40.0% | |
| ACAAGACAACGTCAGTAAAG+TGG | - | tig0022246:103797-103816 | None:intergenic | 40.0% | |
| GAAAAGGTCATTGCTAAACC+CGG | + | tig0022246:103820-103839 | Msa1398280:intron | 40.0% | |
| !! | TTCTGGCAACTCTACTTTTC+CGG | - | tig0022246:103971-103990 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTAGGTTCAGAGA+TGG | - | tig0022246:100044-100063 | None:intergenic | 45.0% |
| TGTGGAATTGAGAGGAGAAG+AGG | - | tig0022246:100156-100175 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTGTGGAATTGAG+AGG | - | tig0022246:100164-100183 | None:intergenic | 45.0% |
| GGAAGAATGAGTAGCGTCAT+CGG | - | tig0022246:100218-100237 | None:intergenic | 45.0% | |
| ATTCTTCCTCCTCCATTCCT+TGG | + | tig0022246:100230-100249 | Msa1398280:CDS | 45.0% | |
| ACTATTGGACACGTGGATCA+CGG | + | tig0022246:100386-100405 | Msa1398280:CDS | 45.0% | |
| ACTAACTGCTGCAATCACCA+GGG | + | tig0022246:100418-100437 | Msa1398280:CDS | 45.0% | |
| !! | GTGAAGTGAGGATTTGGTGT+TGG | + | tig0022246:100492-100511 | Msa1398280:intron | 45.0% |
| ! | TTGTAGGTGCTTGCTGATGA+AGG | + | tig0022246:100557-100576 | Msa1398280:intron | 45.0% |
| ! | TGTAGGTGCTTGCTGATGAA+GGG | + | tig0022246:100558-100577 | Msa1398280:intron | 45.0% |
| TGAAGGGAAAGCAAAAGCTG+TGG | + | tig0022246:100574-100593 | Msa1398280:CDS | 45.0% | |
| GCACCTGAAGAGAAGAAAAG+AGG | + | tig0022246:100617-100636 | Msa1398280:CDS | 45.0% | |
| GCACTGTAAAGGGGTTTGAT+TGG | + | tig0022246:100783-100802 | Msa1398280:intron | 45.0% | |
| ! | CTCTCCTTTTATCCTCGCTT+GGG | + | tig0022246:101350-101369 | Msa1398280:intron | 45.0% |
| AAACTCAGCTTAGGTGGTCT+GGG | + | tig0022246:101506-101525 | Msa1398280:intron | 45.0% | |
| AAGGATACCACCGTCCATTT+GGG | - | tig0022246:102151-102170 | None:intergenic | 45.0% | |
| CATCAGGTGCAGATACAACA+AGG | - | tig0022246:102170-102189 | None:intergenic | 45.0% | |
| ! | CTTGTTGTATCTGCACCTGA+TGG | + | tig0022246:102168-102187 | Msa1398280:CDS | 45.0% |
| !! | ATTCTTCTAGCTCGCCAAGT+AGG | + | tig0022246:102216-102235 | Msa1398280:intron | 45.0% |
| CCGTTACTTCCTTGCTTCTA+AGG | + | tig0022246:102288-102307 | Msa1398280:intron | 45.0% | |
| TCATGAAGAGGGAAAAGGGT+GGG | - | tig0022246:102467-102486 | None:intergenic | 45.0% | |
| ATCATGAAGAGGGAAAAGGG+TGG | - | tig0022246:102468-102487 | None:intergenic | 45.0% | |
| ACGACTACAGGAAGTTACGA+AGG | - | tig0022246:102500-102519 | None:intergenic | 45.0% | |
| ACAATTACGAGGACGACTAC+AGG | - | tig0022246:102512-102531 | None:intergenic | 45.0% | |
| GACCTTCTACAAGTTTCCAG+GGG | + | tig0022246:102580-102599 | Msa1398280:CDS | 45.0% | |
| ATCCCCTGGAAACTTGTAGA+AGG | - | tig0022246:102585-102604 | None:intergenic | 45.0% | |
| ATGATAGGGATATCATCCCC+TGG | - | tig0022246:102599-102618 | None:intergenic | 45.0% | |
| ATTGGGCCGTGTCAATTTCA+AGG | - | tig0022246:102919-102938 | None:intergenic | 45.0% | |
| AAGCAGCAGACATGACATTC+TGG | - | tig0022246:103070-103089 | None:intergenic | 45.0% | |
| !!! | TGAGGTTTTGGGTATGACAC+AGG | + | tig0022246:103177-103196 | Msa1398280:CDS | 45.0% |
| CGAGGAATGACGAGAATTCA+AGG | - | tig0022246:103239-103258 | None:intergenic | 45.0% | |
| GGAAACACCATTGCAATGCA+AGG | - | tig0022246:103412-103431 | None:intergenic | 45.0% | |
| ! | CTAAGTTTTTCCTGGTAGGG+TGG | + | tig0022246:103437-103456 | Msa1398280:intron | 45.0% |
| GAAGATGTTGGATCAAGGAC+AGG | + | tig0022246:103499-103518 | Msa1398280:CDS | 45.0% | |
| !! | AATGTTGGTCTTCTTCTCCG+TGG | + | tig0022246:103608-103627 | Msa1398280:CDS | 45.0% |
| TGTCTTCACGTTTCAGACCA+CGG | - | tig0022246:103628-103647 | None:intergenic | 45.0% | |
| TGAAGACATTCAACGTGGTC+AGG | + | tig0022246:103640-103659 | Msa1398280:CDS | 45.0% | |
| ! | TTGGATGCTTTTGTAGCACC+GGG | - | tig0022246:103841-103860 | None:intergenic | 45.0% |
| ! | CTTGGATGCTTTTGTAGCAC+CGG | - | tig0022246:103842-103861 | None:intergenic | 45.0% |
| TACTCACAAAGGATGAGGGT+GGG | + | tig0022246:103884-103903 | Msa1398280:CDS | 45.0% | |
| GCAGTCCTCAAGTAAAACTG+AGG | - | tig0022246:103940-103959 | None:intergenic | 45.0% | |
| GTGAACGAGTGAGAGAAGTG+TGG | - | tig0022246:100174-100193 | None:intergenic | 50.0% | |
| CATGGATCTCCACCAAGGAA+TGG | - | tig0022246:100245-100264 | None:intergenic | 50.0% | |
| CATTCCTTGGTGGAGATCCA+TGG | + | tig0022246:100243-100262 | Msa1398280:CDS | 50.0% | |
| CGTTCTGGTGAAAGTAGCCA+TGG | - | tig0022246:100263-100282 | None:intergenic | 50.0% | |
| GGTGATTGCAGCAGTTAGTG+TGG | - | tig0022246:100417-100436 | None:intergenic | 50.0% | |
| CACTAACTGCTGCAATCACC+AGG | + | tig0022246:100417-100436 | Msa1398280:CDS | 50.0% | |
| ! | TATGCTCATGTTGACTGCCC+TGG | + | tig0022246:100928-100947 | Msa1398280:CDS | 50.0% |
| CCAAGCGAGGATAAAAGGAG+AGG | - | tig0022246:101352-101371 | None:intergenic | 50.0% | |
| ! | CCTCTCCTTTTATCCTCGCT+TGG | + | tig0022246:101349-101368 | Msa1398280:intron | 50.0% |
| ! | CCTTTTATCCTCGCTTGGGA+CGG | + | tig0022246:101354-101373 | Msa1398280:intron | 50.0% |
| AGCTGGTGGAAACTCAGCTT+AGG | + | tig0022246:101497-101516 | Msa1398280:intron | 50.0% | |
| TGGTGGAAACTCAGCTTAGG+TGG | + | tig0022246:101500-101519 | Msa1398280:intron | 50.0% | |
| GAAACTCAGCTTAGGTGGTC+TGG | + | tig0022246:101505-101524 | Msa1398280:intron | 50.0% | |
| GATTACTGGAGCTGCCCAAA+TGG | + | tig0022246:102134-102153 | Msa1398280:CDS | 50.0% | |
| CAAGGATACCACCGTCCATT+TGG | - | tig0022246:102152-102171 | None:intergenic | 50.0% | |
| !! | GTTTGAGGCATTGGTCCATC+AGG | - | tig0022246:102186-102205 | None:intergenic | 50.0% |
| CTTGTAGAAATGGAGCTCCG+TGG | + | tig0022246:102415-102434 | Msa1398280:CDS | 50.0% | |
| TAGAAATGGAGCTCCGTGGT+GGG | + | tig0022246:102419-102438 | Msa1398280:intron | 50.0% | |
| !! | GCTTTTCAAGCTGGCGAACA+GGG | - | tig0022246:102721-102740 | None:intergenic | 50.0% |
| GCTACTGGTCGTGTTGAACA+AGG | + | tig0022246:103130-103149 | Msa1398280:CDS | 50.0% | |
| GTACTCACAAAGGATGAGGG+TGG | + | tig0022246:103883-103902 | Msa1398280:CDS | 50.0% | |
| TTGAGGACTGCTGATGTCAC+CGG | + | tig0022246:103949-103968 | Msa1398280:CDS | 50.0% | |
| ! | TTGGGGGCGATGAGGGTTTT+AGG | - | tig0022246:100055-100074 | None:intergenic | 55.0% |
| TGAAGGTTTGGGGGCGATGA+GGG | - | tig0022246:100062-100081 | None:intergenic | 55.0% | |
| ATGAAGGTTTGGGGGCGATG+AGG | - | tig0022246:100063-100082 | None:intergenic | 55.0% | |
| TGAGTAGCGTCATCGGTGAG+AGG | - | tig0022246:100211-100230 | None:intergenic | 55.0% | |
| CTTCCTCCTCCATTCCTTGG+TGG | + | tig0022246:100233-100252 | Msa1398280:CDS | 55.0% | |
| TCTCCACCAAGGAATGGAGG+AGG | - | tig0022246:100239-100258 | None:intergenic | 55.0% | |
| GGATCTCCACCAAGGAATGG+AGG | - | tig0022246:100242-100261 | None:intergenic | 55.0% | |
| GTAGCCATGGATCTCCACCA+AGG | - | tig0022246:100250-100269 | None:intergenic | 55.0% | |
| CGTCGGAACTATTGGACACG+TGG | + | tig0022246:100379-100398 | Msa1398280:CDS | 55.0% | |
| CCGTCCCAAGCGAGGATAAA+AGG | - | tig0022246:101357-101376 | None:intergenic | 55.0% | |
| ACTGGAGCTGCCCAAATGGA+CGG | + | tig0022246:102138-102157 | Msa1398280:CDS | 55.0% | |
| GTAGAAATGGAGCTCCGTGG+TGG | + | tig0022246:102418-102437 | Msa1398280:intron | 55.0% | |
| GAAGAGGGAAAAGGGTGGGA+AGG | - | tig0022246:102463-102482 | None:intergenic | 55.0% | |
| !! | GGCTTTTCAAGCTGGCGAAC+AGG | - | tig0022246:102722-102741 | None:intergenic | 55.0% |
| GGACGAGGAACAGTTGCTAC+TGG | + | tig0022246:103115-103134 | Msa1398280:CDS | 55.0% | |
| TTTCAGAGGACCACCCTACC+AGG | - | tig0022246:103450-103469 | None:intergenic | 55.0% | |
| GCTTAGGTGGTCTGGGCTTG+TGG | + | tig0022246:101513-101532 | Msa1398280:intron | 60.0% | |
| TCAAGCTGGCGAACAGGGTC+AGG | - | tig0022246:102716-102735 | None:intergenic | 60.0% | |
| CTCGCTTGGGACGGAGCCTT+GGG | + | tig0022246:101363-101382 | Msa1398280:intron | 65.0% | |
| TCGCTTGGGACGGAGCCTTG+GGG | + | tig0022246:101364-101383 | Msa1398280:intron | 65.0% | |
| GGAGCTGCCCAAATGGACGG+TGG | + | tig0022246:102141-102160 | Msa1398280:CDS | 65.0% | |
| CCAAGGCTCCGTCCCAAGCG+AGG | - | tig0022246:101365-101384 | None:intergenic | 70.0% | |
| CCTCGCTTGGGACGGAGCCT+TGG | + | tig0022246:101362-101381 | Msa1398280:intron | 70.0% | |
| CTTGGGACGGAGCCTTGGGG+CGG | + | tig0022246:101367-101386 | Msa1398280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022246 | gene | 100031 | 104011 | 100031 | ID=Msa1398280;Name=Msa1398280 |
| tig0022246 | mRNA | 100031 | 104011 | 100031 | ID=Msa1398280-mRNA-1;Parent=Msa1398280;Name=Msa1398280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=69|1|0.90|1|1|1|11|0|409 |
| tig0022246 | exon | 100031 | 100281 | 100031 | ID=Msa1398280-mRNA-1:exon:16453;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 100364 | 100439 | 100364 | ID=Msa1398280-mRNA-1:exon:16454;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 100563 | 100655 | 100563 | ID=Msa1398280-mRNA-1:exon:16455;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 100895 | 100969 | 100895 | ID=Msa1398280-mRNA-1:exon:16456;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 102129 | 102233 | 102129 | ID=Msa1398280-mRNA-1:exon:16457;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 102346 | 102436 | 102346 | ID=Msa1398280-mRNA-1:exon:16458;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 102573 | 102778 | 102573 | ID=Msa1398280-mRNA-1:exon:16459;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 103115 | 103198 | 103115 | ID=Msa1398280-mRNA-1:exon:16460;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 103455 | 103520 | 103455 | ID=Msa1398280-mRNA-1:exon:16461;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 103599 | 103661 | 103599 | ID=Msa1398280-mRNA-1:exon:16462;Parent=Msa1398280-mRNA-1 |
| tig0022246 | exon | 103826 | 104011 | 103826 | ID=Msa1398280-mRNA-1:exon:16463;Parent=Msa1398280-mRNA-1 |
| tig0022246 | five_prime_UTR | 100031 | 100099 | 100031 | ID=Msa1398280-mRNA-1:five_prime_utr;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 100100 | 100281 | 100100 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 100364 | 100439 | 100364 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 100563 | 100655 | 100563 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 100895 | 100969 | 100895 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 102129 | 102233 | 102129 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 102346 | 102436 | 102346 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 102573 | 102778 | 102573 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 103115 | 103198 | 103115 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 103455 | 103520 | 103455 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 103599 | 103661 | 103599 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| tig0022246 | CDS | 103826 | 104011 | 103826 | ID=Msa1398280-mRNA-1:cds;Parent=Msa1398280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
