Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398620 | KEH35225.1 | 68.852 | 61 | 15 | 2 | 76 | 134 | 342 | 400 | 4.17e-13 | 81.6 |
| Msa1398620 | KEH35225.1 | 76.577 | 111 | 22 | 2 | 217 | 326 | 334 | 441 | 1.12e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398620 | A0A072VAK7 | 68.852 | 61 | 15 | 2 | 76 | 134 | 342 | 400 | 1.99e-13 | 81.6 |
| Msa1398620 | A0A072VAK7 | 76.577 | 111 | 22 | 2 | 217 | 326 | 334 | 441 | 5.34e-45 | 169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0465170 | Msa1398620 | 0.960742 | 6.666196e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398620 | MtrunA17_Chr3g0142541 | 87.500 | 96 | 9 | 2 | 234 | 326 | 223 | 318 | 2.00e-42 | 149 |
| Msa1398620 | MtrunA17_Chr3g0142541 | 76.364 | 55 | 10 | 1 | 83 | 134 | 223 | 277 | 8.38e-17 | 79.7 |
| Msa1398620 | MtrunA17_Chr7g0250281 | 78.947 | 95 | 12 | 3 | 233 | 326 | 56 | 143 | 4.92e-42 | 142 |
| Msa1398620 | MtrunA17_Chr7g0250281 | 76.923 | 52 | 8 | 1 | 83 | 134 | 57 | 104 | 1.53e-20 | 86.3 |
| Msa1398620 | MtrunA17_Chr3g0120901 | 51.852 | 162 | 52 | 5 | 166 | 326 | 163 | 299 | 8.72e-40 | 141 |
| Msa1398620 | MtrunA17_Chr3g0120901 | 76.923 | 52 | 10 | 1 | 83 | 134 | 209 | 258 | 6.56e-17 | 79.7 |
| Msa1398620 | MtrunA17_Chr1g0167711 | 62.105 | 95 | 35 | 1 | 233 | 326 | 56 | 150 | 3.26e-34 | 122 |
| Msa1398620 | MtrunA17_Chr1g0167711 | 55.556 | 63 | 27 | 1 | 83 | 144 | 57 | 119 | 8.78e-15 | 70.9 |
| Msa1398620 | MtrunA17_Chr7g0236141 | 51.579 | 95 | 41 | 3 | 236 | 326 | 130 | 223 | 1.24e-23 | 97.1 |
| Msa1398620 | MtrunA17_Chr7g0236091 | 51.579 | 95 | 41 | 3 | 236 | 326 | 130 | 223 | 1.24e-23 | 97.1 |
| Msa1398620 | MtrunA17_Chr7g0236181 | 51.579 | 95 | 41 | 3 | 236 | 326 | 130 | 223 | 1.24e-23 | 97.1 |
| Msa1398620 | MtrunA17_Chr7g0227651 | 59.091 | 88 | 31 | 3 | 242 | 325 | 296 | 382 | 5.52e-23 | 98.2 |
| Msa1398620 | MtrunA17_Chr7g0227631 | 59.091 | 88 | 31 | 3 | 242 | 325 | 222 | 308 | 1.00e-22 | 96.3 |
| Msa1398620 | MtrunA17_Chr7g0227641 | 59.091 | 88 | 31 | 3 | 242 | 325 | 278 | 364 | 4.44e-22 | 95.5 |
| Msa1398620 | MtrunA17_Chr7g0226471 | 53.125 | 96 | 36 | 5 | 239 | 326 | 53 | 147 | 3.21e-21 | 88.2 |
| Msa1398620 | MtrunA17_Chr5g0396411 | 49.020 | 102 | 43 | 4 | 229 | 326 | 301 | 397 | 8.51e-21 | 92.4 |
| Msa1398620 | MtrunA17_Chr3g0107721 | 59.494 | 79 | 28 | 2 | 252 | 326 | 342 | 420 | 1.19e-20 | 92.0 |
| Msa1398620 | MtrunA17_Chr7g0226481 | 48.958 | 96 | 44 | 3 | 235 | 326 | 256 | 350 | 1.96e-20 | 90.5 |
| Msa1398620 | MtrunA17_Chr7g0262091 | 51.064 | 94 | 39 | 3 | 237 | 326 | 301 | 391 | 2.79e-20 | 90.5 |
| Msa1398620 | MtrunA17_Chr7g0227841 | 52.941 | 85 | 38 | 2 | 243 | 326 | 94 | 177 | 2.91e-20 | 86.7 |
| Msa1398620 | MtrunA17_Chr7g0255101 | 50.526 | 95 | 43 | 3 | 235 | 326 | 388 | 481 | 3.71e-20 | 90.9 |
| Msa1398620 | MtrunA17_Chr7g0227831 | 51.136 | 88 | 36 | 4 | 242 | 325 | 36 | 120 | 3.89e-20 | 84.7 |
| Msa1398620 | MtrunA17_Chr1g0167231 | 52.500 | 80 | 34 | 2 | 250 | 325 | 55 | 134 | 4.39e-20 | 84.7 |
| Msa1398620 | MtrunA17_Chr3g0139601 | 46.602 | 103 | 45 | 4 | 229 | 325 | 378 | 476 | 9.22e-20 | 89.7 |
| Msa1398620 | MtrunA17_Chr7g0236211 | 48.958 | 96 | 44 | 3 | 235 | 326 | 295 | 389 | 1.78e-19 | 88.2 |
| Msa1398620 | MtrunA17_Chr7g0236111 | 53.086 | 81 | 34 | 2 | 250 | 326 | 49 | 129 | 3.06e-19 | 82.4 |
| Msa1398620 | MtrunA17_Chr1g0166251 | 52.632 | 95 | 34 | 4 | 236 | 326 | 299 | 386 | 4.59e-19 | 87.0 |
| Msa1398620 | MtrunA17_Chr7g0227851 | 43.860 | 114 | 50 | 3 | 223 | 326 | 272 | 381 | 1.14e-18 | 85.9 |
| Msa1398620 | MtrunA17_Chr5g0396401 | 55.556 | 81 | 30 | 3 | 250 | 326 | 299 | 377 | 1.51e-18 | 85.5 |
| Msa1398620 | MtrunA17_Chr7g0262081 | 47.000 | 100 | 45 | 3 | 234 | 325 | 301 | 400 | 1.66e-18 | 85.5 |
| Msa1398620 | MtrunA17_Chr7g0236151 | 53.086 | 81 | 34 | 2 | 250 | 326 | 237 | 317 | 1.89e-18 | 84.3 |
| Msa1398620 | MtrunA17_Chr7g0236191 | 53.086 | 81 | 34 | 2 | 250 | 326 | 237 | 317 | 1.89e-18 | 84.3 |
| Msa1398620 | MtrunA17_Chr7g0262121 | 47.000 | 100 | 45 | 3 | 234 | 325 | 293 | 392 | 2.08e-18 | 85.1 |
| Msa1398620 | MtrunA17_Chr3g0124051 | 47.872 | 94 | 36 | 3 | 245 | 325 | 202 | 295 | 8.25e-18 | 82.4 |
| Msa1398620 | MtrunA17_Chr5g0396391 | 57.534 | 73 | 25 | 4 | 250 | 320 | 151 | 219 | 9.69e-18 | 80.9 |
| Msa1398620 | MtrunA17_Chr5g0399841 | 40.171 | 117 | 57 | 5 | 223 | 326 | 67 | 183 | 7.52e-17 | 77.4 |
| Msa1398620 | MtrunA17_Chr3g0080781 | 48.864 | 88 | 38 | 3 | 245 | 325 | 97 | 184 | 4.42e-16 | 75.1 |
| Msa1398620 | MtrunA17_Chr5g0399361 | 47.619 | 84 | 40 | 3 | 246 | 326 | 147 | 229 | 1.39e-15 | 74.7 |
| Msa1398620 | MtrunA17_Chr3g0093361 | 52.381 | 84 | 32 | 3 | 247 | 326 | 324 | 403 | 1.40e-15 | 77.0 |
| Msa1398620 | MtrunA17_Chr3g0091171 | 53.086 | 81 | 30 | 3 | 247 | 323 | 287 | 363 | 8.38e-15 | 74.3 |
| Msa1398620 | MtrunA17_Chr3g0138571 | 50.000 | 84 | 37 | 3 | 246 | 325 | 304 | 386 | 9.94e-15 | 74.3 |
| Msa1398620 | MtrunA17_Chr7g0235431 | 41.053 | 95 | 52 | 2 | 235 | 325 | 279 | 373 | 1.18e-14 | 73.9 |
| Msa1398620 | MtrunA17_Chr4g0041551 | 41.905 | 105 | 56 | 4 | 226 | 325 | 252 | 356 | 2.56e-14 | 72.8 |
| Msa1398620 | MtrunA17_Chr3g0138561 | 47.500 | 80 | 38 | 2 | 250 | 325 | 90 | 169 | 2.70e-14 | 70.5 |
| Msa1398620 | MtrunA17_Chr3g0138371 | 50.000 | 80 | 36 | 2 | 250 | 325 | 309 | 388 | 5.15e-14 | 72.4 |
| Msa1398620 | MtrunA17_Chr4g0052151 | 45.238 | 84 | 37 | 3 | 248 | 326 | 10 | 89 | 1.85e-13 | 65.5 |
| Msa1398620 | MtrunA17_Chr3g0136291 | 46.341 | 82 | 36 | 3 | 249 | 326 | 253 | 330 | 2.43e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGTCTTATTTCTTGTTC+TGG | 0.149527 | tig0022273:-13870 | Msa1398620:intron |
| TGTTTACGGGAGATAGAAAA+TGG | 0.225371 | tig0022273:-13831 | Msa1398620:CDS |
| AAGAAGCTTTCTCTCTCTTT+TGG | 0.227303 | tig0022273:-17049 | Msa1398620:intron |
| AGGCATTCTGGGACAATCTT+TGG | 0.231457 | tig0022273:+15555 | None:intergenic |
| AGCTGAGATGAAAGGCATTC+TGG | 0.236838 | tig0022273:+15543 | None:intergenic |
| AGGCATTCCGGAACAATCTT+TGG | 0.251117 | tig0022273:+13765 | None:intergenic |
| GTGCTTGGCATTTAAATCTA+TGG | 0.252596 | tig0022273:+13620 | None:intergenic |
| AATTTACAGGAGATAGAAAA+TGG | 0.279856 | tig0022273:-15618 | Msa1398620:intron |
| GGAAATTTACTTATTGTTTA+CGG | 0.306317 | tig0022273:-13845 | Msa1398620:CDS |
| TAAGTCTTATTTCTTGTTCT+GGG | 0.310418 | tig0022273:-13869 | Msa1398620:intron |
| ACGAGCATGAATCCTTCTTT+TGG | 0.325573 | tig0022273:+14448 | None:intergenic |
| ACGAGCATGAATCCTTCTTT+TGG | 0.325573 | tig0022273:+14724 | None:intergenic |
| CATTTGTCTGTCATCGTCAT+TGG | 0.363360 | tig0022273:+14617 | None:intergenic |
| GAAATTTACTTATTGTTTAC+GGG | 0.368137 | tig0022273:-13844 | Msa1398620:CDS |
| AGCTGAGATGAAAGGCATTC+CGG | 0.378666 | tig0022273:+13753 | None:intergenic |
| GGCATTCTGGGACAATCTTT+GGG | 0.382615 | tig0022273:+15556 | None:intergenic |
| GAAATGATGATGAGGTCATT+TGG | 0.386282 | tig0022273:-15584 | Msa1398620:CDS |
| GTTGAAAGTTGGGACTTTGA+TGG | 0.397309 | tig0022273:-14427 | Msa1398620:CDS |
| GTTGAAAGTTGGGACTTTGA+TGG | 0.397309 | tig0022273:-14703 | Msa1398620:CDS |
| CAAGGTTGATGCACTATAGA+TGG | 0.398238 | tig0022273:-16941 | Msa1398620:CDS |
| GGCATTCCGGAACAATCTTT+GGG | 0.405579 | tig0022273:+13766 | None:intergenic |
| ATCTTGGTTATGTTTACAAT+GGG | 0.409646 | tig0022273:-14657 | Msa1398620:CDS |
| ACATGATTCCAGCCGTATCT+TGG | 0.414052 | tig0022273:-14673 | Msa1398620:CDS |
| TCCAATGGGTGGCAGTCCAC+CGG | 0.418568 | tig0022273:-16216 | Msa1398620:CDS |
| ATGATGATGATGAGGACATC+TGG | 0.420587 | tig0022273:-13794 | Msa1398620:CDS |
| ATTCATGCTCGTTGAAAGTT+GGG | 0.421275 | tig0022273:-14437 | Msa1398620:CDS |
| ATTCATGCTCGTTGAAAGTT+GGG | 0.421275 | tig0022273:-14713 | Msa1398620:CDS |
| ATATGATTCCAGCCGTATCT+TGG | 0.423244 | tig0022273:-14395 | Msa1398620:CDS |
| GCTGAGATGAAAGGCATTCT+GGG | 0.427295 | tig0022273:+15544 | None:intergenic |
| TCCAATGGGTGGCAATCCAC+CGG | 0.428747 | tig0022273:-16780 | Msa1398620:CDS |
| CATCGTCATTGGAAAACAAC+TGG | 0.430054 | tig0022273:+14628 | None:intergenic |
| AGAGAAAGCTTCTTCAAGAA+TGG | 0.430857 | tig0022273:+17058 | None:intergenic |
| GATTCATGCTCGTTGAAAGT+TGG | 0.442365 | tig0022273:-14438 | Msa1398620:CDS |
| GATTCATGCTCGTTGAAAGT+TGG | 0.442365 | tig0022273:-14714 | Msa1398620:CDS |
| AAATGATGATGAGGTCATTT+GGG | 0.443371 | tig0022273:-15583 | Msa1398620:CDS |
| TGCTTGTTTAAGAATTATAG+AGG | 0.448930 | tig0022273:-13723 | Msa1398620:CDS |
| TGCTTGTTTAAGAATTATAG+AGG | 0.448930 | tig0022273:-15513 | Msa1398620:CDS |
| ATAGAAAATGGGACAGAGAA+TGG | 0.455331 | tig0022273:-15606 | Msa1398620:CDS |
| GGAGGACCCAAAGATTGTTC+CGG | 0.462628 | tig0022273:-13772 | Msa1398620:CDS |
| TATCTTGGTTATGTTTACAA+TGG | 0.472295 | tig0022273:-14658 | Msa1398620:CDS |
| GAGAAAGCTTCTTCAAGAAT+GGG | 0.473363 | tig0022273:+17059 | None:intergenic |
| CCCGGTGGATTGCCACCCAT+TGG | 0.474141 | tig0022273:+16779 | None:intergenic |
| AATATAAGTTTACATCCCCT+TGG | 0.474499 | tig0022273:+13570 | None:intergenic |
| ATAGAAAATGGGATAGAGAA+TGG | 0.474639 | tig0022273:-13819 | Msa1398620:CDS |
| GAGATAATTTCTGTAACATC+TGG | 0.480168 | tig0022273:+13598 | None:intergenic |
| CCCGGTGGACTGCCACCCAT+TGG | 0.482816 | tig0022273:+16215 | None:intergenic |
| CATTGGCTCATGCGTCCAAT+GGG | 0.487089 | tig0022273:-16230 | Msa1398620:CDS |
| CATTGGCTCATGCGTCCAAT+GGG | 0.487089 | tig0022273:-16794 | Msa1398620:CDS |
| TGACGATGACAGACAAATGT+TGG | 0.495059 | tig0022273:-14613 | Msa1398620:CDS |
| ATTTCTCAGGGGCTGATCCA+AGG | 0.503589 | tig0022273:-16959 | Msa1398620:intron |
| TTCAACTACCAGCCAAAAGA+AGG | 0.504170 | tig0022273:-14460 | Msa1398620:intron |
| TTCAACTACCAGCCAAAAGA+AGG | 0.504170 | tig0022273:-14736 | Msa1398620:CDS |
| TTTCTGTAACATCTGGTGCT+TGG | 0.511968 | tig0022273:+13605 | None:intergenic |
| AGAAATTATCTCTGTGTCCA+AGG | 0.516537 | tig0022273:-13587 | Msa1398620:CDS |
| CATCTATAGTGCATCAACCT+TGG | 0.520258 | tig0022273:+16942 | None:intergenic |
| GTTTACGGGAGATAGAAAAT+GGG | 0.526687 | tig0022273:-13830 | Msa1398620:CDS |
| GTCTTATTTCTTGTTCTGGG+TGG | 0.530220 | tig0022273:-13866 | Msa1398620:CDS |
| GACGATGACAGACAAATGTT+GGG | 0.533955 | tig0022273:-14612 | Msa1398620:CDS |
| ACATTGGCTCATGCGTCCAA+TGG | 0.534552 | tig0022273:-16231 | Msa1398620:CDS |
| ACATTGGCTCATGCGTCCAA+TGG | 0.534552 | tig0022273:-16795 | Msa1398620:CDS |
| AAACATAACCAAGATACGGC+TGG | 0.541067 | tig0022273:+14387 | None:intergenic |
| TCCTTCTGTGTGTAGAACAT+TGG | 0.543361 | tig0022273:-16247 | Msa1398620:CDS |
| TCCTTCTGTGTGTAGAACAT+TGG | 0.543361 | tig0022273:-16811 | Msa1398620:CDS |
| GAAATTATCTCTGTGTCCAA+GGG | 0.544783 | tig0022273:-13586 | Msa1398620:CDS |
| CCAATGGGTGGCAGTCCACC+GGG | 0.551903 | tig0022273:-16215 | Msa1398620:CDS |
| ATTTACAGGAGATAGAAAAT+GGG | 0.554411 | tig0022273:-15617 | Msa1398620:intron |
| TCATTGGAAAACAACTGGAC+TGG | 0.554772 | tig0022273:+14633 | None:intergenic |
| AAACATAACCAAGATACGGC+TGG | 0.557490 | tig0022273:+14665 | None:intergenic |
| TGGGTGGCAGTCCACCGGGT+GGG | 0.563530 | tig0022273:-16211 | Msa1398620:intron |
| TTGTAAACATAACCAAGATA+CGG | 0.567134 | tig0022273:+14661 | None:intergenic |
| CCAATGGGTGGCAATCCACC+GGG | 0.577255 | tig0022273:-16779 | Msa1398620:intron |
| TTATAAACATAACCAAGATA+CGG | 0.577507 | tig0022273:+14383 | None:intergenic |
| AGTTGGGACTTTGATGGTAA+CGG | 0.578740 | tig0022273:-14421 | Msa1398620:CDS |
| AGTTGGGACTTTGATGGTAA+CGG | 0.578740 | tig0022273:-14697 | Msa1398620:CDS |
| TGGCTCATGCGTCCAATGGG+TGG | 0.589768 | tig0022273:-16791 | Msa1398620:CDS |
| TGGCTCATGCGTCCAATGGG+TGG | 0.590413 | tig0022273:-16227 | Msa1398620:CDS |
| ATGGGTGGCAGTCCACCGGG+TGG | 0.593448 | tig0022273:-16212 | Msa1398620:CDS |
| TGATGATGATGAGGACATCT+GGG | 0.601472 | tig0022273:-13793 | Msa1398620:CDS |
| ACAAATGTTGGGTCATGCGT+CGG | 0.611868 | tig0022273:-14601 | Msa1398620:intron |
| AGAGAATGGAAATGATGATG+AGG | 0.624314 | tig0022273:-15592 | Msa1398620:CDS |
| TTGATGCACTATAGATGGAG+AGG | 0.626161 | tig0022273:-16936 | Msa1398620:CDS |
| ATAGATGGAGAGGATGCTCA+TGG | 0.633435 | tig0022273:-16926 | Msa1398620:intron |
| GCCAATGTTCTACACACAGA+AGG | 0.638354 | tig0022273:+16246 | None:intergenic |
| GCCAATGTTCTACACACAGA+AGG | 0.638354 | tig0022273:+16810 | None:intergenic |
| GAATGGAAATGATGATGATG+AGG | 0.647441 | tig0022273:-13802 | Msa1398620:CDS |
| TGATGATGAGGTCATTTGGG+AGG | 0.652261 | tig0022273:-15580 | Msa1398620:CDS |
| AAATTATCTCTGTGTCCAAG+GGG | 0.678004 | tig0022273:-13585 | Msa1398620:CDS |
| GAAGGATAAACAAACCCACC+CGG | 0.690660 | tig0022273:+16197 | None:intergenic |
| GGATAAACAAACCCACCCGG+TGG | 0.700595 | tig0022273:+16200 | None:intergenic |
| TGATGATGAGGACATCTGGG+AGG | 0.799396 | tig0022273:-13790 | Msa1398620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGTAATTATATATATAT+GGG | + | tig0022273:14541-14560 | None:intergenic | 10.0% |
| !! | CAAGAGTAATTATATATATA+TGG | + | tig0022273:14542-14561 | None:intergenic | 15.0% |
| !!! | GGTTTATTTTTCAAAAAAAA+TGG | - | tig0022273:14747-14766 | Msa1398620:CDS | 15.0% |
| !! | CAACTTAAATAAAAAACAAT+CGG | + | tig0022273:15546-15565 | None:intergenic | 15.0% |
| !! | AATATTTAATTAACAACTAC+TGG | + | tig0022273:15588-15607 | None:intergenic | 15.0% |
| !! | AATTATATTACTCTGTATTT+CGG | - | tig0022273:16380-16399 | Msa1398620:intron | 15.0% |
| !! | AAAATTACCTAATTATCTAT+TGG | + | tig0022273:16555-16574 | None:intergenic | 15.0% |
| !! | TTTGAAGAAATTCAATAATT+AGG | - | tig0022273:16574-16593 | Msa1398620:intron | 15.0% |
| !!! | ATTAATGTAACTTGTGATAA+TGG | + | tig0022273:14699-14718 | None:intergenic | 20.0% |
| !!! | TCAACATTTTATCATTAATG+AGG | - | tig0022273:14962-14981 | Msa1398620:intron | 20.0% |
| !! | CACATATAATTTGATTGATT+TGG | - | tig0022273:14988-15007 | Msa1398620:intron | 20.0% |
| !!! | TGATTTGGTGATATTTATTT+TGG | - | tig0022273:15003-15022 | Msa1398620:intron | 20.0% |
| !! | AGATGTTACAAAAATTATCT+CGG | - | tig0022273:15295-15314 | Msa1398620:intron | 20.0% |
| !! | AACTTATATTTGAATGATGA+TGG | - | tig0022273:15334-15353 | Msa1398620:intron | 20.0% |
| !! | ACTTATATTTGAATGATGAT+GGG | - | tig0022273:15335-15354 | Msa1398620:intron | 20.0% |
| !!! | GTTTTTTATTTAAGTTGTCT+CGG | - | tig0022273:15549-15568 | Msa1398620:CDS | 20.0% |
| !! | TTATAAACATAACCAAGATA+CGG | + | tig0022273:16298-16317 | None:intergenic | 20.0% |
| !! | TATCTTGGTTATGTTTATAA+TGG | - | tig0022273:16298-16317 | Msa1398620:intron | 20.0% |
| !! | ATCTTGGTTATGTTTATAAT+GGG | - | tig0022273:16299-16318 | Msa1398620:intron | 20.0% |
| !!! | AAAAAAAGTTTTCAGCTTTA+TGG | + | tig0022273:16355-16374 | None:intergenic | 20.0% |
| !!! | ATAAAGCTGAAAACTTTTTT+TGG | - | tig0022273:16354-16373 | Msa1398620:intron | 20.0% |
| !! | AATTAGACCAATAGATAATT+AGG | - | tig0022273:16545-16564 | Msa1398620:intron | 20.0% |
| !! | AGTTAAACACAATAAATATG+AGG | + | tig0022273:16773-16792 | None:intergenic | 20.0% |
| !! | GGAAATTTACTTATTGTTTA+CGG | - | tig0022273:16833-16852 | Msa1398620:intron | 20.0% |
| !! | GAAATTTACTTATTGTTTAC+GGG | - | tig0022273:16834-16853 | Msa1398620:intron | 20.0% |
| !! | CTCAGAAGATCAAAATTTTA+TGG | + | tig0022273:13664-13683 | None:intergenic | 25.0% |
| ! | GAGAGAATATTGAAGAAAAT+TGG | + | tig0022273:14629-14648 | None:intergenic | 25.0% |
| !!! | ATCATAATGTTAGCTTGTTT+AGG | - | tig0022273:14726-14745 | Msa1398620:CDS | 25.0% |
| !! | TGATGTTGAAATTGAACTTT+TGG | - | tig0022273:14793-14812 | Msa1398620:intron | 25.0% |
| ! | ATGATAAAATGTTGAAGCTT+TGG | + | tig0022273:14957-14976 | None:intergenic | 25.0% |
| !!! | TTTGGTGATATTTATTTTGG+TGG | - | tig0022273:15006-15025 | Msa1398620:intron | 25.0% |
| !!! | TTGGTGATATTTATTTTGGT+GGG | - | tig0022273:15007-15026 | Msa1398620:intron | 25.0% |
| !!! | CTCTTAACTTTTGTTTTTGT+TGG | - | tig0022273:15036-15055 | Msa1398620:intron | 25.0% |
| !!! | TGTTTTTGTTGGAAATTTAC+AGG | - | tig0022273:15047-15066 | Msa1398620:intron | 25.0% |
| ! | AATTTACAGGAGATAGAAAA+TGG | - | tig0022273:15060-15079 | Msa1398620:intron | 25.0% |
| ! | ATTTACAGGAGATAGAAAAT+GGG | - | tig0022273:15061-15080 | Msa1398620:intron | 25.0% |
| ! | TGCTTGTTTAAGAATTATAG+AGG | - | tig0022273:15165-15184 | Msa1398620:intron | 25.0% |
| !! | GAGATAATTTTTGTAACATC+TGG | + | tig0022273:15296-15315 | None:intergenic | 25.0% |
| !! | CTTATATTTGAATGATGATG+GGG | - | tig0022273:15336-15355 | Msa1398620:intron | 25.0% |
| !!! | TTATATTTGAATGATGATGG+GGG | - | tig0022273:15337-15356 | Msa1398620:intron | 25.0% |
| !!! | ATGGATTTTAATTGCATGAA+AGG | + | tig0022273:15487-15506 | None:intergenic | 25.0% |
| ! | AAAAAACAATCGGTAAGAAA+AGG | + | tig0022273:15536-15555 | None:intergenic | 25.0% |
| !!! | GTACTTTATTTTGGGTATTT+CGG | - | tig0022273:15678-15697 | Msa1398620:intron | 25.0% |
| ! | TTTGTAAGCATCAGTTAAAA+TGG | - | tig0022273:15857-15876 | Msa1398620:intron | 25.0% |
| ! | TTGTAAACATAACCAAGATA+CGG | + | tig0022273:16020-16039 | None:intergenic | 25.0% |
| ! | TATCTTGGTTATGTTTACAA+TGG | - | tig0022273:16020-16039 | Msa1398620:intron | 25.0% |
| ! | ATCTTGGTTATGTTTACAAT+GGG | - | tig0022273:16021-16040 | Msa1398620:intron | 25.0% |
| !! | TTTTTCCTTGAAAAAACTTC+TGG | + | tig0022273:16420-16439 | None:intergenic | 25.0% |
| ! | ATGATAAAATGTTGAAGCTT+CGG | + | tig0022273:14957-14976 | None:intergenic | 25.0% |
| ! | ATAAGACTTAAGATATGTAG+AGG | + | tig0022273:16799-16818 | None:intergenic | 25.0% |
| !!! | TTAAGTCTTATTTCTTGTTC+TGG | - | tig0022273:16808-16827 | Msa1398620:CDS | 25.0% |
| !!! | TAAGTCTTATTTCTTGTTCT+GGG | - | tig0022273:16809-16828 | Msa1398620:CDS | 25.0% |
| ! | TGCTTGTTTAAGAATTATAG+AGG | - | tig0022273:15165-15184 | Msa1398620:intron | 25.0% |
| !! | ATGCTTTTTGTAACTTTCAC+GGG | - | tig0022273:13563-13582 | Msa1398620:CDS | 30.0% |
| AATCATATCTTTCGCTTATG+TGG | - | tig0022273:13691-13710 | Msa1398620:CDS | 30.0% | |
| !! | CATGCTTTTTGTAACTTTCA+CGG | - | tig0022273:14126-14145 | Msa1398620:intron | 30.0% |
| !! | ATGCTTTTTGTAACTTTCAC+GGG | - | tig0022273:13563-13582 | Msa1398620:CDS | 30.0% |
| GAAAAAGCTTCTTCAAGAAT+GGG | + | tig0022273:14186-14205 | None:intergenic | 30.0% | |
| AGAAAAAGCTTCTTCAAGAA+TGG | + | tig0022273:14187-14206 | None:intergenic | 30.0% | |
| !! | AAGAAGCTTTTTCTCTCTTT+TGG | - | tig0022273:14193-14212 | Msa1398620:intron | 30.0% |
| AAAATGACTTTGGTGAGAAT+TGG | + | tig0022273:14651-14670 | None:intergenic | 30.0% | |
| GCAAATCATGAAAATGACTT+TGG | + | tig0022273:14661-14680 | None:intergenic | 30.0% | |
| !! | AATGTAACTTGTGATAATGG+CGG | + | tig0022273:14696-14715 | None:intergenic | 30.0% |
| !!! | ACTGATTTTTAAGTACAGTG+TGG | - | tig0022273:14875-14894 | Msa1398620:intron | 30.0% |
| ! | AAATGATGATGAGGTCATTT+GGG | - | tig0022273:15095-15114 | Msa1398620:intron | 30.0% |
| AAAAATTATCTCGGTTTCCA+AGG | - | tig0022273:15304-15323 | Msa1398620:intron | 30.0% | |
| AAAATTATCTCGGTTTCCAA+GGG | - | tig0022273:15305-15324 | Msa1398620:intron | 30.0% | |
| AATATAAGTTTACATCCCCT+TGG | + | tig0022273:15324-15343 | None:intergenic | 30.0% | |
| !! | TATATTTGAATGATGATGGG+GGG | - | tig0022273:15338-15357 | Msa1398620:intron | 30.0% |
| !!! | TATATGTCTAGCTTTTTTCC+TGG | - | tig0022273:15381-15400 | Msa1398620:intron | 30.0% |
| TTGAAAATGTATACGACATG+AGG | + | tig0022273:15454-15473 | None:intergenic | 30.0% | |
| AAGGAAAAGTAAAAGTTGAG+AGG | + | tig0022273:15517-15536 | None:intergenic | 30.0% | |
| ATCATGTGAGATTTCAATGA+AGG | + | tig0022273:16142-16161 | None:intergenic | 30.0% | |
| !!! | ATTCTCCAGAAGTTTTTTCA+AGG | - | tig0022273:16412-16431 | Msa1398620:intron | 30.0% |
| ! | ATTTCCACTGAAGATACTTT+TGG | + | tig0022273:16461-16480 | None:intergenic | 30.0% |
| AGTACCCATGCTTTATATAA+GGG | + | tig0022273:16607-16626 | None:intergenic | 30.0% | |
| CTAACTTAGAGCATAAAAGT+TGG | - | tig0022273:16629-16648 | Msa1398620:intron | 30.0% | |
| TGATAAAATGTTGAAGCTTC+GGG | + | tig0022273:16717-16736 | None:intergenic | 30.0% | |
| ! | TCAACATTTTATCATTCACG+AGG | - | tig0022273:16723-16742 | Msa1398620:intron | 30.0% |
| ATAGAAAATGGGATAGAGAA+TGG | - | tig0022273:16859-16878 | Msa1398620:intron | 30.0% | |
| GAGATAATTTCTGTAACATC+TGG | + | tig0022273:17083-17102 | None:intergenic | 30.0% | |
| AATATAAGTTTACATCCCCT+TGG | + | tig0022273:15324-15343 | None:intergenic | 30.0% | |
| GAGAAAGCTTCTTCAAGAAT+GGG | + | tig0022273:13622-13641 | None:intergenic | 35.0% | |
| AGAGAAAGCTTCTTCAAGAA+TGG | + | tig0022273:13623-13642 | None:intergenic | 35.0% | |
| ! | AAGAAGCTTTCTCTCTCTTT+TGG | - | tig0022273:13629-13648 | Msa1398620:CDS | 35.0% |
| !! | TTATGTGGATGCTATTTCTC+AGG | - | tig0022273:13706-13725 | Msa1398620:CDS | 35.0% |
| !! | TATGTGGATGCTATTTCTCA+GGG | - | tig0022273:13707-13726 | Msa1398620:CDS | 35.0% |
| TAAATTTCACCAGCCTAAAG+AGG | + | tig0022273:14062-14081 | None:intergenic | 35.0% | |
| TCTTTAGGCTGGTGAAATTT+AGG | - | tig0022273:14061-14080 | Msa1398620:intron | 35.0% | |
| CGTGAAAGTTACAAAAAGCA+TGG | + | tig0022273:13564-13583 | None:intergenic | 35.0% | |
| !! | AGCTTTTTCTCTCTTTTGGT+TGG | - | tig0022273:14197-14216 | Msa1398620:intron | 35.0% |
| AATCATATCTTTCGCTTCTG+TGG | - | tig0022273:14255-14274 | Msa1398620:intron | 35.0% | |
| GTGTTCTTGGATAGTTATAG+CGG | - | tig0022273:14515-14534 | Msa1398620:intron | 35.0% | |
| TACTCTTGACACATCGTATA+AGG | - | tig0022273:14554-14573 | Msa1398620:intron | 35.0% | |
| !!! | GGGGTATTTACGTTTTTTAC+TGG | + | tig0022273:14590-14609 | None:intergenic | 35.0% |
| ! | ATTGGAATTGACTTTGCTGT+CGG | + | tig0022273:14611-14630 | None:intergenic | 35.0% |
| !! | ATGTAACTTGTGATAATGGC+GGG | + | tig0022273:14695-14714 | None:intergenic | 35.0% |
| ! | AAAATGGAGTAGTTTGCATG+TGG | - | tig0022273:14763-14782 | Msa1398620:intron | 35.0% |
| ATAGAAAATGGGACAGAGAA+TGG | - | tig0022273:15072-15091 | Msa1398620:intron | 35.0% | |
| ! | AGAGAATGGAAATGATGATG+AGG | - | tig0022273:15086-15105 | Msa1398620:intron | 35.0% |
| ! | GAAATGATGATGAGGTCATT+TGG | - | tig0022273:15094-15113 | Msa1398620:intron | 35.0% |
| !!! | AAGTTTTGAGCTGAGATGAA+AGG | + | tig0022273:15146-15165 | None:intergenic | 35.0% |
| GTACTTCGCGTTTAAATCTA+TGG | + | tig0022273:15274-15293 | None:intergenic | 35.0% | |
| AAATTATCTCGGTTTCCAAG+GGG | - | tig0022273:15306-15325 | Msa1398620:intron | 35.0% | |
| TACGACATGAGGACAAAATA+AGG | + | tig0022273:15443-15462 | None:intergenic | 35.0% | |
| AAAGTTGAGAGGAACTAGAA+TGG | + | tig0022273:15506-15525 | None:intergenic | 35.0% | |
| TGATATGATGCATAGCTACA+TGG | - | tig0022273:15607-15626 | Msa1398620:CDS | 35.0% | |
| !!! | TCCCTGGTGTACTTTATTTT+GGG | - | tig0022273:15670-15689 | Msa1398620:intron | 35.0% |
| ACCCAAAATAAAGTACACCA+GGG | + | tig0022273:15674-15693 | None:intergenic | 35.0% | |
| TACCCAAAATAAAGTACACC+AGG | + | tig0022273:15675-15694 | None:intergenic | 35.0% | |
| AGCGAGACTTCTTAATTCTA+CGG | + | tig0022273:15743-15762 | None:intergenic | 35.0% | |
| ! | TTAAAATGGCCATGTGGTTT+TGG | - | tig0022273:15871-15890 | Msa1398620:intron | 35.0% |
| ATTCATGCTCGTTGAAAGTT+GGG | - | tig0022273:15965-15984 | Msa1398620:intron | 35.0% | |
| TCAGAATCTGAAAACTGCAT+AGG | - | tig0022273:16100-16119 | Msa1398620:intron | 35.0% | |
| ATTCATGCTCGTTGAAAGTT+GGG | - | tig0022273:15965-15984 | Msa1398620:intron | 35.0% | |
| !! | AGTCCAGTTGTTTTCTATTG+AGG | - | tig0022273:16325-16344 | Msa1398620:intron | 35.0% |
| !! | GTCCAGTTGTTTTCTATTGA+GGG | - | tig0022273:16326-16345 | Msa1398620:intron | 35.0% |
| !! | TTCTCCAAAAGTATCTTCAG+TGG | - | tig0022273:16454-16473 | Msa1398620:intron | 35.0% |
| TACCCATGCTTTATATAAGG+GGG | + | tig0022273:16605-16624 | None:intergenic | 35.0% | |
| GTACCCATGCTTTATATAAG+GGG | + | tig0022273:16606-16625 | None:intergenic | 35.0% | |
| GAGTACCCATGCTTTATATA+AGG | + | tig0022273:16608-16627 | None:intergenic | 35.0% | |
| ! | ATAAAAGTTGGCCTAAGAAG+TGG | - | tig0022273:16641-16660 | Msa1398620:intron | 35.0% |
| TGTTTACGGGAGATAGAAAA+TGG | - | tig0022273:16847-16866 | Msa1398620:intron | 35.0% | |
| GTTTACGGGAGATAGAAAAT+GGG | - | tig0022273:16848-16867 | Msa1398620:intron | 35.0% | |
| ! | GAATGGAAATGATGATGATG+AGG | - | tig0022273:16876-16895 | Msa1398620:intron | 35.0% |
| !!! | AAGTTTTGAGCTGAGATGAA+AGG | + | tig0022273:15146-15165 | None:intergenic | 35.0% |
| GTGCTTGGCATTTAAATCTA+TGG | + | tig0022273:17061-17080 | None:intergenic | 35.0% | |
| AGAAATTATCTCTGTGTCCA+AGG | - | tig0022273:17091-17110 | Msa1398620:CDS | 35.0% | |
| GAAATTATCTCTGTGTCCAA+GGG | - | tig0022273:17092-17111 | Msa1398620:CDS | 35.0% | |
| AAATTATCTCTGTGTCCAAG+GGG | - | tig0022273:17093-17112 | Msa1398620:CDS | 35.0% | |
| ! | AGCTTTCTCTCTCTTTTGGT+TGG | - | tig0022273:13633-13652 | Msa1398620:CDS | 40.0% |
| !! | ATGTGGATGCTATTTCTCAG+GGG | - | tig0022273:13708-13727 | Msa1398620:CDS | 40.0% |
| CATCTATAGTGCATCAACCT+TGG | + | tig0022273:13739-13758 | None:intergenic | 40.0% | |
| !! | CAAGGTTGATGCACTATAGA+TGG | - | tig0022273:13737-13756 | Msa1398620:CDS | 40.0% |
| TTGATGCACTATAGATGGAG+AGG | - | tig0022273:13742-13761 | Msa1398620:CDS | 40.0% | |
| TGCACCTAGACTCTGATAAA+AGG | - | tig0022273:13790-13809 | Msa1398620:CDS | 40.0% | |
| !! | TTGGCCTTTTATCAGAGTCT+AGG | + | tig0022273:13797-13816 | None:intergenic | 40.0% |
| TCCTTCTGTGTGTAGAACAT+TGG | - | tig0022273:13867-13886 | Msa1398620:CDS | 40.0% | |
| CATCTCTAGTACATCAACCT+TGG | + | tig0022273:14303-14322 | None:intergenic | 40.0% | |
| !! | CAAGGTTGATGTACTAGAGA+TGG | - | tig0022273:14301-14320 | Msa1398620:intron | 40.0% |
| TTGATGTACTAGAGATGGAG+AGG | - | tig0022273:14306-14325 | Msa1398620:intron | 40.0% | |
| TCCTTCTGTGTGTAGAACAT+TGG | - | tig0022273:13867-13886 | Msa1398620:CDS | 40.0% | |
| ! | TTGGAATTGACTTTGCTGTC+GGG | + | tig0022273:14610-14629 | None:intergenic | 40.0% |
| !! | TGTGATAATGGCGGGTTAAT+TGG | + | tig0022273:14687-14706 | None:intergenic | 40.0% |
| ! | GAGTAGTTTGCATGTGGTTA+GGG | - | tig0022273:14769-14788 | Msa1398620:intron | 40.0% |
| CGCGTTTAAATCTATGGAAC+AGG | + | tig0022273:15268-15287 | None:intergenic | 40.0% | |
| !! | TTTTCCTGGATTAGAGTCGA+TGG | - | tig0022273:15395-15414 | Msa1398620:intron | 40.0% |
| TAGAGTCGATGGTGTTTCAA+AGG | - | tig0022273:15406-15425 | Msa1398620:intron | 40.0% | |
| CTTGTTTGTAAGTTTGTCCC+TGG | - | tig0022273:15654-15673 | Msa1398620:intron | 40.0% | |
| !! | GTCCCTGGTGTACTTTATTT+TGG | - | tig0022273:15669-15688 | Msa1398620:intron | 40.0% |
| ! | CAGACTAGATTTTACTCGCT+CGG | - | tig0022273:15792-15811 | Msa1398620:intron | 40.0% |
| CATCAGTTAAAATGGCCATG+TGG | - | tig0022273:15865-15884 | Msa1398620:intron | 40.0% | |
| CAAGAACAACCAAAACCACA+TGG | + | tig0022273:15883-15902 | None:intergenic | 40.0% | |
| !!! | TGTGGTTTTGGTTGTTCTTG+AGG | - | tig0022273:15883-15902 | Msa1398620:intron | 40.0% |
| TTAGAGCATACTGACGTTGA+AGG | + | tig0022273:15916-15935 | None:intergenic | 40.0% | |
| TTCAACTACCAGCCAAAAGA+AGG | - | tig0022273:15942-15961 | Msa1398620:intron | 40.0% | |
| ! | ACGAGCATGAATCCTTCTTT+TGG | + | tig0022273:15957-15976 | None:intergenic | 40.0% |
| GATTCATGCTCGTTGAAAGT+TGG | - | tig0022273:15964-15983 | Msa1398620:intron | 40.0% | |
| GTTGAAAGTTGGGACTTTGA+TGG | - | tig0022273:15975-15994 | Msa1398620:intron | 40.0% | |
| ! | AGTTGGGACTTTGATGGTAA+CGG | - | tig0022273:15981-16000 | Msa1398620:intron | 40.0% |
| AAACATAACCAAGATACGGC+TGG | + | tig0022273:16016-16035 | None:intergenic | 40.0% | |
| TCATTGGAAAACAACTGGAC+TGG | + | tig0022273:16048-16067 | None:intergenic | 40.0% | |
| CATCGTCATTGGAAAACAAC+TGG | + | tig0022273:16053-16072 | None:intergenic | 40.0% | |
| CATTTGTCTGTCATCGTCAT+TGG | + | tig0022273:16064-16083 | None:intergenic | 40.0% | |
| TGACGATGACAGACAAATGT+TGG | - | tig0022273:16065-16084 | Msa1398620:intron | 40.0% | |
| GACGATGACAGACAAATGTT+GGG | - | tig0022273:16066-16085 | Msa1398620:intron | 40.0% | |
| ! | GTAAGTTGACTTTCAAGCGT+CGG | - | tig0022273:16179-16198 | Msa1398620:intron | 40.0% |
| TTCAACTACCAGCCAAAAGA+AGG | - | tig0022273:15942-15961 | Msa1398620:intron | 40.0% | |
| ! | ACGAGCATGAATCCTTCTTT+TGG | + | tig0022273:15957-15976 | None:intergenic | 40.0% |
| GATTCATGCTCGTTGAAAGT+TGG | - | tig0022273:15964-15983 | Msa1398620:intron | 40.0% | |
| GTTGAAAGTTGGGACTTTGA+TGG | - | tig0022273:15975-15994 | Msa1398620:intron | 40.0% | |
| ! | AGTTGGGACTTTGATGGTAA+CGG | - | tig0022273:15981-16000 | Msa1398620:intron | 40.0% |
| ATATGATTCCAGCCGTATCT+TGG | - | tig0022273:16283-16302 | Msa1398620:intron | 40.0% | |
| AAACATAACCAAGATACGGC+TGG | + | tig0022273:16016-16035 | None:intergenic | 40.0% | |
| CTCCCTCAATAGAAAACAAC+TGG | + | tig0022273:16331-16350 | None:intergenic | 40.0% | |
| TGTCCCCCTTATATAAAGCA+TGG | - | tig0022273:16599-16618 | Msa1398620:intron | 40.0% | |
| GTCCCCCTTATATAAAGCAT+GGG | - | tig0022273:16600-16619 | Msa1398620:intron | 40.0% | |
| !! | GTCTTATTTCTTGTTCTGGG+TGG | - | tig0022273:16812-16831 | Msa1398620:CDS | 40.0% |
| ! | ATGATGATGATGAGGACATC+TGG | - | tig0022273:16884-16903 | Msa1398620:intron | 40.0% |
| ! | TGATGATGATGAGGACATCT+GGG | - | tig0022273:16885-16904 | Msa1398620:intron | 40.0% |
| TTTCTGTAACATCTGGTGCT+TGG | + | tig0022273:17076-17095 | None:intergenic | 40.0% | |
| ATAGATGGAGAGGATGCTCA+TGG | - | tig0022273:13752-13771 | Msa1398620:CDS | 45.0% | |
| GCCAATGTTCTACACACAGA+AGG | + | tig0022273:13871-13890 | None:intergenic | 45.0% | |
| !! | GCATCTGTTTTGGGTACAGA+GGG | - | tig0022273:13976-13995 | Msa1398620:intron | 45.0% |
| ATCCTGTCACCTTGATGTGA+TGG | - | tig0022273:14011-14030 | Msa1398620:intron | 45.0% | |
| TCCTGTCACCTTGATGTGAT+GGG | - | tig0022273:14012-14031 | Msa1398620:intron | 45.0% | |
| ACTTTCAGCCCATCACATCA+AGG | + | tig0022273:14023-14042 | None:intergenic | 45.0% | |
| !! | TTCTGTGGTTGCTGTTTCTC+AGG | - | tig0022273:14270-14289 | Msa1398620:intron | 45.0% |
| !! | TCTGTGGTTGCTGTTTCTCA+GGG | - | tig0022273:14271-14290 | Msa1398620:intron | 45.0% |
| TTGGCCTCTTATCAGAGTCT+GGG | + | tig0022273:14361-14380 | None:intergenic | 45.0% | |
| GCCAATGTTCTACACACAGA+AGG | + | tig0022273:13871-13890 | None:intergenic | 45.0% | |
| GAAGGATAAACAAACCCACC+CGG | + | tig0022273:14484-14503 | None:intergenic | 45.0% | |
| AGAACACACTCGAAACAGGA+AGG | + | tig0022273:14502-14521 | None:intergenic | 45.0% | |
| ! | TCCTGTTTCGAGTGTGTTCT+TGG | - | tig0022273:14502-14521 | Msa1398620:intron | 45.0% |
| TCCAAGAACACACTCGAAAC+AGG | + | tig0022273:14506-14525 | None:intergenic | 45.0% | |
| ! | TGGAATTGACTTTGCTGTCG+GGG | + | tig0022273:14609-14628 | None:intergenic | 45.0% |
| ! | GGAGTAGTTTGCATGTGGTT+AGG | - | tig0022273:14768-14787 | Msa1398620:intron | 45.0% |
| ! | TGATGATGAGGTCATTTGGG+AGG | - | tig0022273:15098-15117 | Msa1398620:intron | 45.0% |
| !! | GGCATTCTGGGACAATCTTT+GGG | + | tig0022273:15125-15144 | None:intergenic | 45.0% |
| !! | AGGCATTCTGGGACAATCTT+TGG | + | tig0022273:15126-15145 | None:intergenic | 45.0% |
| !! | GCTGAGATGAAAGGCATTCT+GGG | + | tig0022273:15137-15156 | None:intergenic | 45.0% |
| !! | AGCTGAGATGAAAGGCATTC+TGG | + | tig0022273:15138-15157 | None:intergenic | 45.0% |
| !! | AACACCATCGACTCTAATCC+AGG | + | tig0022273:15402-15421 | None:intergenic | 45.0% |
| ! | GCATGAATCCTTCTTTTGGC+TGG | + | tig0022273:15953-15972 | None:intergenic | 45.0% |
| ACATGATTCCAGCCGTATCT+TGG | - | tig0022273:16005-16024 | Msa1398620:intron | 45.0% | |
| ACAAATGTTGGGTCATGCGT+CGG | - | tig0022273:16077-16096 | Msa1398620:intron | 45.0% | |
| ! | GCATGAATCCTTCTTTTGGC+TGG | + | tig0022273:15953-15972 | None:intergenic | 45.0% |
| AGCATCCACGTTCACTTCTT+AGG | + | tig0022273:16676-16695 | None:intergenic | 45.0% | |
| GGCATTCCGGAACAATCTTT+GGG | + | tig0022273:16915-16934 | None:intergenic | 45.0% | |
| AGGCATTCCGGAACAATCTT+TGG | + | tig0022273:16916-16935 | None:intergenic | 45.0% | |
| !! | AGCTGAGATGAAAGGCATTC+CGG | + | tig0022273:15138-15157 | None:intergenic | 45.0% |
| ATTTCTCAGGGGCTGATCCA+AGG | - | tig0022273:13719-13738 | Msa1398620:CDS | 50.0% | |
| CTAGCTGCATCTCTCACTCT+TGG | + | tig0022273:13816-13835 | None:intergenic | 50.0% | |
| CAAGAGTGAGAGATGCAGCT+AGG | - | tig0022273:13814-13833 | Msa1398620:CDS | 50.0% | |
| !! | ACATTGGCTCATGCGTCCAA+TGG | - | tig0022273:13883-13902 | Msa1398620:intron | 50.0% |
| !! | CATTGGCTCATGCGTCCAAT+GGG | - | tig0022273:13884-13903 | Msa1398620:intron | 50.0% |
| ! | TCTGGTCAGCGCATCTGTTT+TGG | - | tig0022273:13966-13985 | Msa1398620:intron | 50.0% |
| ! | CTGGTCAGCGCATCTGTTTT+GGG | - | tig0022273:13967-13986 | Msa1398620:intron | 50.0% |
| !! | CGCATCTGTTTTGGGTACAG+AGG | - | tig0022273:13975-13994 | Msa1398620:intron | 50.0% |
| !! | TTTTGGGTACAGAGGGCCAT+AGG | - | tig0022273:13983-14002 | Msa1398620:intron | 50.0% |
| GGTGACAGGATTCGAACCTA+TGG | + | tig0022273:14002-14021 | None:intergenic | 50.0% | |
| ! | TCACGGGTTTTGCACAGCAA+TGG | - | tig0022273:14143-14162 | Msa1398620:intron | 50.0% |
| ! | CACGGGTTTTGCACAGCAAT+GGG | - | tig0022273:14144-14163 | Msa1398620:intron | 50.0% |
| !! | CTGTGGTTGCTGTTTCTCAG+GGG | - | tig0022273:14272-14291 | Msa1398620:intron | 50.0% |
| AGAGATGGAGAGGATGCTCA+TGG | - | tig0022273:14316-14335 | Msa1398620:intron | 50.0% | |
| TGCACCCAGACTCTGATAAG+AGG | - | tig0022273:14354-14373 | Msa1398620:intron | 50.0% | |
| CTTGGCCTCTTATCAGAGTC+TGG | + | tig0022273:14362-14381 | None:intergenic | 50.0% | |
| CTAGCTGCATCTCTCACTCT+TGG | + | tig0022273:13816-13835 | None:intergenic | 50.0% | |
| CAAGAGTGAGAGATGCAGCT+AGG | - | tig0022273:13814-13833 | Msa1398620:CDS | 50.0% | |
| !! | ACATTGGCTCATGCGTCCAA+TGG | - | tig0022273:13883-13902 | Msa1398620:intron | 50.0% |
| !! | CATTGGCTCATGCGTCCAAT+GGG | - | tig0022273:13884-13903 | Msa1398620:intron | 50.0% |
| !! | TTGAATGATGATGGGGGGCT+AGG | - | tig0022273:15343-15362 | Msa1398620:intron | 50.0% |
| AGCGTGAGAAAATGCCCTAG+TGG | - | tig0022273:15703-15722 | Msa1398620:intron | 50.0% | |
| ! | GAAAATGCCCTAGTGGACCA+CGG | - | tig0022273:15710-15729 | Msa1398620:intron | 50.0% |
| AATTCTACGGTTCTCAGCCG+TGG | + | tig0022273:15730-15749 | None:intergenic | 50.0% | |
| ! | GTTGGCCTAAGAAGTGAACG+TGG | - | tig0022273:16668-16687 | Msa1398620:intron | 50.0% |
| ! | TGATGATGAGGACATCTGGG+AGG | - | tig0022273:16888-16907 | Msa1398620:intron | 50.0% |
| GGAGGACCCAAAGATTGTTC+CGG | - | tig0022273:16906-16925 | Msa1398620:intron | 50.0% | |
| ! | TCACGGGTTTTGCGCAGCAA+TGG | - | tig0022273:13579-13598 | Msa1398620:CDS | 55.0% |
| ! | CACGGGTTTTGCGCAGCAAT+GGG | - | tig0022273:13580-13599 | Msa1398620:CDS | 55.0% |
| TGGAGAGGATGCTCATGGTG+AGG | - | tig0022273:13757-13776 | Msa1398620:CDS | 55.0% | |
| TCCAATGGGTGGCAATCCAC+CGG | - | tig0022273:13898-13917 | Msa1398620:intron | 55.0% | |
| GTGGGTTTGGGTACAGACGA+GGG | - | tig0022273:13921-13940 | Msa1398620:intron | 55.0% | |
| TGGGTTTGGGTACAGACGAG+GGG | - | tig0022273:13922-13941 | Msa1398620:intron | 55.0% | |
| GCCCATCACATCAAGGTGAC+AGG | + | tig0022273:14016-14035 | None:intergenic | 55.0% | |
| CAGCCTAAAGAGGTTGTGCC+GGG | + | tig0022273:14052-14071 | None:intergenic | 55.0% | |
| CCAGCCTAAAGAGGTTGTGC+CGG | + | tig0022273:14053-14072 | None:intergenic | 55.0% | |
| GTTTCTCAGGGGCTGATCCA+AGG | - | tig0022273:14283-14302 | Msa1398620:intron | 55.0% | |
| TGGAGAGGATGCTCATGGTG+AGG | - | tig0022273:13757-13776 | Msa1398620:CDS | 55.0% | |
| GGATAAACAAACCCACCCGG+TGG | + | tig0022273:14481-14500 | None:intergenic | 55.0% | |
| TTCTCAGCCGTGGTCCACTA+GGG | + | tig0022273:15720-15739 | None:intergenic | 55.0% | |
| GGCCTAAGAAGTGGACGTGT+TGG | - | tig0022273:16650-16669 | Msa1398620:intron | 55.0% | |
| GGCCAACACGTCCACTTCTT+AGG | + | tig0022273:16655-16674 | None:intergenic | 55.0% | |
| TGGCTCATGCGTCCAATGGG+TGG | - | tig0022273:13887-13906 | Msa1398620:intron | 60.0% | |
| CCAATGGGTGGCAATCCACC+GGG | - | tig0022273:13899-13918 | Msa1398620:intron | 60.0% | |
| ! | GCAATCCACCGGGTGGGTTT+GGG | - | tig0022273:13909-13928 | Msa1398620:intron | 60.0% |
| CGTCTGTACCCAAACCCACC+CGG | + | tig0022273:13920-13939 | None:intergenic | 60.0% | |
| ! | GGTGGGTTTGGGTACAGACG+AGG | - | tig0022273:13920-13939 | Msa1398620:intron | 60.0% |
| GGGTTTGGGTACAGACGAGG+GGG | - | tig0022273:13923-13942 | Msa1398620:intron | 60.0% | |
| AGACGAGGTGTAGCGCAGTC+TGG | - | tig0022273:13948-13967 | Msa1398620:intron | 60.0% | |
| ! | TGGGCTGAAAGTGCACAGCC+CGG | - | tig0022273:14031-14050 | Msa1398620:intron | 60.0% |
| CAGCCCGGCACAACCTCTTT+AGG | - | tig0022273:14046-14065 | Msa1398620:intron | 60.0% | |
| CCGGCACAACCTCTTTAGGC+TGG | - | tig0022273:14050-14069 | Msa1398620:intron | 60.0% | |
| TGGCTCATGCGTCCAATGGG+TGG | - | tig0022273:13887-13906 | Msa1398620:intron | 60.0% | |
| TCCAATGGGTGGCAGTCCAC+CGG | - | tig0022273:14462-14481 | Msa1398620:intron | 60.0% | |
| GTTCTCAGCCGTGGTCCACT+AGG | + | tig0022273:15721-15740 | None:intergenic | 60.0% | |
| !! | CCCGGTGGATTGCCACCCAT+TGG | + | tig0022273:13902-13921 | None:intergenic | 65.0% |
| ATGGGTGGCAATCCACCGGG+TGG | - | tig0022273:13902-13921 | Msa1398620:intron | 65.0% | |
| TGGGTGGCAATCCACCGGGT+GGG | - | tig0022273:13903-13922 | Msa1398620:intron | 65.0% | |
| ! | GGCAATCCACCGGGTGGGTT+TGG | - | tig0022273:13908-13927 | Msa1398620:intron | 65.0% |
| CTGTACCCAAACCCACCCGG+TGG | + | tig0022273:13917-13936 | None:intergenic | 65.0% | |
| ACAGACGAGGGGGTGAGACG+AGG | - | tig0022273:13933-13952 | Msa1398620:intron | 65.0% | |
| CCAATGGGTGGCAGTCCACC+GGG | - | tig0022273:14463-14482 | Msa1398620:intron | 65.0% | |
| !! | CCCGGTGGACTGCCACCCAT+TGG | + | tig0022273:14466-14485 | None:intergenic | 70.0% |
| ATGGGTGGCAGTCCACCGGG+TGG | - | tig0022273:14466-14485 | Msa1398620:intron | 70.0% | |
| TGGGTGGCAGTCCACCGGGT+GGG | - | tig0022273:14467-14486 | Msa1398620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022273 | gene | 13563 | 17137 | 13563 | ID=Msa1398620;Name=Msa1398620 |
| tig0022273 | mRNA | 13563 | 17137 | 13563 | ID=Msa1398620-mRNA-1;Parent=Msa1398620;Name=Msa1398620-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.12|1|1|8|0|326 |
| tig0022273 | exon | 17050 | 17137 | 17050 | ID=Msa1398620-mRNA-1:exon:16759;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 16927 | 16972 | 16927 | ID=Msa1398620-mRNA-1:exon:16758;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 16780 | 16833 | 16780 | ID=Msa1398620-mRNA-1:exon:16757;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 16212 | 16269 | 16212 | ID=Msa1398620-mRNA-1:exon:16756;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 15475 | 15631 | 15475 | ID=Msa1398620-mRNA-1:exon:16755;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 14602 | 14774 | 14602 | ID=Msa1398620-mRNA-1:exon:16754;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 14391 | 14470 | 14391 | ID=Msa1398620-mRNA-1:exon:16753;Parent=Msa1398620-mRNA-1 |
| tig0022273 | exon | 13563 | 13887 | 13563 | ID=Msa1398620-mRNA-1:exon:16752;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 17050 | 17137 | 17050 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 16927 | 16972 | 16927 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 16780 | 16833 | 16780 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 16212 | 16269 | 16212 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 15475 | 15631 | 15475 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 14602 | 14774 | 14602 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 14391 | 14470 | 14391 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| tig0022273 | CDS | 13563 | 13887 | 13563 | ID=Msa1398620-mRNA-1:cds;Parent=Msa1398620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
