Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398680 | XP_003613576.1 | 87.435 | 382 | 47 | 1 | 1 | 382 | 3 | 383 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398680 | G7K9R3 | 87.435 | 382 | 47 | 1 | 1 | 382 | 3 | 383 | 0.0 | 703 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1398680 | 0.818936 | 1.510772e-52 | -8.615850e-47 |
| Msa0768370 | Msa1398680 | 0.812701 | 3.712779e-51 | -8.615850e-47 |
| Msa1286800 | Msa1398680 | 0.800463 | 1.424235e-48 | -8.615850e-47 |
| Msa1121490 | Msa1398680 | 0.800327 | 1.518485e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398680 | MtrunA17_Chr5g0415931 | 87.435 | 382 | 47 | 1 | 1 | 382 | 3 | 383 | 0.0 | 703 |
| Msa1398680 | MtrunA17_Chr5g0415901 | 75.131 | 382 | 43 | 2 | 1 | 382 | 1 | 330 | 0.0 | 580 |
| Msa1398680 | MtrunA17_Chr1g0181301 | 49.010 | 404 | 180 | 7 | 1 | 382 | 1 | 400 | 2.29e-129 | 377 |
| Msa1398680 | MtrunA17_Chr1g0208731 | 44.010 | 384 | 168 | 10 | 2 | 380 | 3 | 344 | 2.37e-97 | 293 |
| Msa1398680 | MtrunA17_Chr5g0437231 | 50.000 | 308 | 132 | 11 | 1 | 305 | 1 | 289 | 7.13e-84 | 257 |
| Msa1398680 | MtrunA17_Chr7g0247701 | 42.025 | 395 | 180 | 15 | 4 | 379 | 5 | 369 | 4.13e-78 | 245 |
| Msa1398680 | MtrunA17_Chr7g0247731 | 40.955 | 398 | 182 | 15 | 4 | 382 | 5 | 368 | 2.95e-74 | 235 |
| Msa1398680 | MtrunA17_Chr7g0247721 | 39.853 | 409 | 175 | 18 | 4 | 382 | 43 | 410 | 5.75e-72 | 230 |
| Msa1398680 | MtrunA17_Chr5g0437241 | 44.404 | 277 | 133 | 7 | 79 | 353 | 1 | 258 | 6.65e-66 | 210 |
| Msa1398680 | MtrunA17_Chr1g0151451 | 45.685 | 197 | 81 | 8 | 2 | 185 | 3 | 186 | 2.59e-46 | 158 |
| Msa1398680 | MtrunA17_Chr7g0246641 | 38.742 | 302 | 141 | 13 | 92 | 382 | 2 | 270 | 1.01e-44 | 155 |
| Msa1398680 | MtrunA17_Chr6g0459631 | 60.714 | 84 | 32 | 1 | 135 | 218 | 69 | 151 | 3.00e-25 | 102 |
| Msa1398680 | MtrunA17_Chr6g0459631 | 57.377 | 61 | 26 | 0 | 321 | 381 | 149 | 209 | 2.98e-18 | 82.4 |
| Msa1398680 | MtrunA17_Chr7g0246651 | 34.742 | 213 | 123 | 5 | 56 | 260 | 7 | 211 | 5.63e-22 | 93.2 |
| Msa1398680 | MtrunA17_Chr3g0143611 | 25.130 | 386 | 246 | 14 | 1 | 377 | 1 | 352 | 2.81e-19 | 88.2 |
| Msa1398680 | MtrunA17_Chr3g0143621 | 25.532 | 423 | 234 | 18 | 1 | 377 | 20 | 407 | 5.34e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTACATTGCTCCTAAAT+TGG | 0.222050 | tig0022278:+81440 | None:intergenic |
| TAATCATTTGGACTTGTTAT+AGG | 0.239358 | tig0022278:+81139 | None:intergenic |
| TCTAATCAATTCCACTTAAA+AGG | 0.241393 | tig0022278:+80452 | None:intergenic |
| ATGCAAGACACTGACCATTT+TGG | 0.251355 | tig0022278:-81043 | Msa1398680:CDS |
| TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | tig0022278:-81072 | Msa1398680:CDS |
| GATGATAAATTCTTCGTCTA+TGG | 0.282940 | tig0022278:+81279 | None:intergenic |
| GGTGGTCGTGTTGATGATTA+AGG | 0.291776 | tig0022278:+81461 | None:intergenic |
| CTTCTTTGTAACAAAACATT+TGG | 0.301077 | tig0022278:+80905 | None:intergenic |
| ATCAACACGACCACCAATTT+AGG | 0.305762 | tig0022278:-81453 | Msa1398680:CDS |
| TTTGTCAAAAGTTGAGAGTT+TGG | 0.306004 | tig0022278:-80717 | Msa1398680:CDS |
| TTAAGAATTGTCAATTCTAA+TGG | 0.308529 | tig0022278:+81343 | None:intergenic |
| TCAATCATTGGCAAACTAAT+AGG | 0.312864 | tig0022278:+81226 | None:intergenic |
| ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | tig0022278:+81244 | None:intergenic |
| AATGGATACACTCTATTTGC+AGG | 0.334507 | tig0022278:+81361 | None:intergenic |
| TGAGAAATATGAAGCTGATA+TGG | 0.338929 | tig0022278:+80655 | None:intergenic |
| TTGAACCAATTGATCACATT+TGG | 0.344806 | tig0022278:-81522 | Msa1398680:CDS |
| ACAAGTACTTAAGTTGGAAT+TGG | 0.345955 | tig0022278:-80765 | Msa1398680:CDS |
| AACGTAAAACATGGAAGTTT+TGG | 0.351299 | tig0022278:-80536 | Msa1398680:CDS |
| CCAATTGATCACATTTGGTT+TGG | 0.352054 | tig0022278:-81517 | Msa1398680:CDS |
| TTGTCAAAAGTTGAGAGTTT+GGG | 0.367643 | tig0022278:-80716 | Msa1398680:CDS |
| GCATAACCATGGAGCGAGAT+TGG | 0.373158 | tig0022278:-81591 | None:intergenic |
| CCTTTGAAGTGAGGTTTGTA+AGG | 0.384751 | tig0022278:+80503 | None:intergenic |
| TTGTTATTCAAGTGACCCTT+CGG | 0.395653 | tig0022278:-80945 | Msa1398680:CDS |
| CCAAACCAAATGTGATCAAT+TGG | 0.396537 | tig0022278:+81517 | None:intergenic |
| TACTTATTTAGTGAAATCAT+TGG | 0.416138 | tig0022278:-80858 | Msa1398680:CDS |
| CATTACATTCTACAATGGTT+TGG | 0.419262 | tig0022278:-81011 | Msa1398680:CDS |
| GCTGCAACCACATAATCATT+TGG | 0.420868 | tig0022278:+81127 | None:intergenic |
| TAATGTCGATGAAACCAAAA+TGG | 0.420892 | tig0022278:+81029 | None:intergenic |
| TTCTTTACAAGTACTTAAGT+TGG | 0.428096 | tig0022278:-80771 | Msa1398680:CDS |
| TTTCTCAAGTTATCTACAAA+AGG | 0.428648 | tig0022278:-80639 | Msa1398680:CDS |
| AAAAGGTGGCACAACCCATA+TGG | 0.429129 | tig0022278:+80469 | None:intergenic |
| AAGGTATGGCACCTCCCATA+TGG | 0.431844 | tig0022278:-80484 | Msa1398680:CDS |
| TTCAAGTGACCCTTCGGGTA+TGG | 0.433703 | tig0022278:-80939 | Msa1398680:CDS |
| TGGTGAGAAGGTTTATAAGT+AGG | 0.439223 | tig0022278:-80820 | Msa1398680:CDS |
| TGTTATTCAAGTGACCCTTC+GGG | 0.440936 | tig0022278:-80944 | Msa1398680:CDS |
| GGTGAGAAGGTTTATAAGTA+GGG | 0.448283 | tig0022278:-80819 | Msa1398680:CDS |
| CATAACCATGGAGCGAGATT+GGG | 0.451858 | tig0022278:-81590 | None:intergenic |
| TCAAAAGGACCTCTAGGATA+AGG | 0.452966 | tig0022278:+80572 | None:intergenic |
| GAATGATAAACATCAATCAT+TGG | 0.457445 | tig0022278:+81214 | None:intergenic |
| ACGAAGAATTTATCATCAGT+TGG | 0.458286 | tig0022278:-81273 | Msa1398680:CDS |
| GGTTGCGAGCCAGCCATGAC+TGG | 0.461953 | tig0022278:+81300 | None:intergenic |
| GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | tig0022278:-80832 | Msa1398680:CDS |
| GTTGTGGCTCCAGTCATGGC+TGG | 0.471336 | tig0022278:-81309 | Msa1398680:CDS |
| CGAAGAATTTATCATCAGTT+GGG | 0.479167 | tig0022278:-81272 | Msa1398680:CDS |
| GGACCTCTAGGATAAGGAAT+AGG | 0.482897 | tig0022278:+80578 | None:intergenic |
| TTATATATTCCCATATCAAA+AGG | 0.509410 | tig0022278:+80557 | None:intergenic |
| CCTTACAAACCTCACTTCAA+AGG | 0.511620 | tig0022278:-80503 | Msa1398680:CDS |
| AACAAGTCCAAATGATTATG+TGG | 0.518480 | tig0022278:-81134 | Msa1398680:CDS |
| CAAACCTCACTTCAAAGGTA+TGG | 0.525919 | tig0022278:-80498 | Msa1398680:CDS |
| CTTTGAAGTGAGGTTTGTAA+GGG | 0.530606 | tig0022278:+80504 | None:intergenic |
| AGGTATGGCACCTCCCATAT+GGG | 0.532239 | tig0022278:-80483 | Msa1398680:CDS |
| AAAGGTGGCACAACCCATAT+GGG | 0.532965 | tig0022278:+80470 | None:intergenic |
| GATTTCACTAAATAAGTAAG+TGG | 0.538843 | tig0022278:+80863 | None:intergenic |
| CTTAACAACAAGAGATGTTG+TGG | 0.538941 | tig0022278:-81325 | Msa1398680:CDS |
| TTACATTGCTCCTAAATTGG+TGG | 0.539694 | tig0022278:+81443 | None:intergenic |
| TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | tig0022278:-81085 | Msa1398680:CDS |
| TATTTAGTGAAATCATTGGA+GGG | 0.549492 | tig0022278:-80854 | Msa1398680:CDS |
| GTTTGCCCAATCTCGCTCCA+TGG | 0.556567 | tig0022278:+81585 | None:intergenic |
| TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | tig0022278:+81093 | None:intergenic |
| CCCATATCAAAAGGACCTCT+AGG | 0.561580 | tig0022278:+80566 | None:intergenic |
| TTATTTAGTGAAATCATTGG+AGG | 0.564804 | tig0022278:-80855 | Msa1398680:CDS |
| TTGGTTCTGTCTGCAAACAT+TGG | 0.564939 | tig0022278:-81498 | Msa1398680:CDS |
| TCTGAAGGGATCATTAGCAT+AGG | 0.577323 | tig0022278:+81418 | None:intergenic |
| ATCGACATTACATTCTACAA+TGG | 0.582494 | tig0022278:-81016 | Msa1398680:CDS |
| TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | tig0022278:+81092 | None:intergenic |
| TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | tig0022278:-80991 | Msa1398680:CDS |
| GGTGCCATACCTTTGAAGTG+AGG | 0.604787 | tig0022278:+80494 | None:intergenic |
| AGGGTCAGAATGTGCAACAA+AGG | 0.604874 | tig0022278:-80800 | Msa1398680:CDS |
| AATCAATTCCACTTAAAAGG+TGG | 0.605003 | tig0022278:+80455 | None:intergenic |
| GCATAAAGTTACTTTGTCAG+TGG | 0.605801 | tig0022278:-81164 | Msa1398680:CDS |
| AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | tig0022278:-80844 | Msa1398680:CDS |
| AGATGTTGTGGCTCCAGTCA+TGG | 0.606449 | tig0022278:-81313 | Msa1398680:CDS |
| GGAATATATAACGTAAAACA+TGG | 0.617818 | tig0022278:-80545 | Msa1398680:CDS |
| ATTCTCTGTTCCATACCCGA+AGG | 0.619525 | tig0022278:+80929 | None:intergenic |
| GAACCTATTCCTTATCCTAG+AGG | 0.634791 | tig0022278:-80581 | Msa1398680:CDS |
| TTCTCTGTTCCATACCCGAA+GGG | 0.635821 | tig0022278:+80930 | None:intergenic |
| GCAGCAATTTACACTACCCG+TGG | 0.645826 | tig0022278:-81109 | Msa1398680:CDS |
| AATTGGATGACAAAGGTGAG+AGG | 0.664453 | tig0022278:-80748 | Msa1398680:CDS |
| ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | tig0022278:-80840 | Msa1398680:CDS |
| GGTGGCACAACCCATATGGG+AGG | 0.690978 | tig0022278:+80473 | None:intergenic |
| AAGTTGGAATTGGATGACAA+AGG | 0.697370 | tig0022278:-80755 | Msa1398680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAGAATTGTCAATTCTAA+TGG | + | tig0022278:80700-80719 | None:intergenic | 20.0% |
| !! | TACTTATTTAGTGAAATCAT+TGG | - | tig0022278:81182-81201 | Msa1398680:CDS | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | + | tig0022278:81486-81505 | None:intergenic | 20.0% |
| !! | TTAAGAATTGTCAATTCTAA+TGG | + | tig0022278:80700-80719 | None:intergenic | 20.0% |
| !! | TACTTATTTAGTGAAATCAT+TGG | - | tig0022278:81182-81201 | Msa1398680:CDS | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | + | tig0022278:81486-81505 | None:intergenic | 20.0% |
| ! | GAATGATAAACATCAATCAT+TGG | + | tig0022278:80829-80848 | None:intergenic | 25.0% |
| !!! | TAATCATTTGGACTTGTTAT+AGG | + | tig0022278:80904-80923 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCCAACGAGTTA+CGG | + | tig0022278:81061-81080 | None:intergenic | 25.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | + | tig0022278:81138-81157 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | + | tig0022278:81180-81199 | None:intergenic | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | - | tig0022278:81185-81204 | Msa1398680:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | - | tig0022278:81186-81205 | Msa1398680:CDS | 25.0% |
| ! | TTCTTTACAAGTACTTAAGT+TGG | - | tig0022278:81269-81288 | Msa1398680:CDS | 25.0% |
| ! | TTTCTCAAGTTATCTACAAA+AGG | - | tig0022278:81401-81420 | Msa1398680:CDS | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | - | tig0022278:81495-81514 | Msa1398680:CDS | 25.0% |
| ! | GAATGATAAACATCAATCAT+TGG | + | tig0022278:80829-80848 | None:intergenic | 25.0% |
| !!! | TAATCATTTGGACTTGTTAT+AGG | + | tig0022278:80904-80923 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCCAACGAGTTA+CGG | + | tig0022278:81061-81080 | None:intergenic | 25.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | + | tig0022278:81138-81157 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | + | tig0022278:81180-81199 | None:intergenic | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | - | tig0022278:81185-81204 | Msa1398680:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | - | tig0022278:81186-81205 | Msa1398680:CDS | 25.0% |
| ! | TTCTTTACAAGTACTTAAGT+TGG | - | tig0022278:81269-81288 | Msa1398680:CDS | 25.0% |
| ! | TTTCTCAAGTTATCTACAAA+AGG | - | tig0022278:81401-81420 | Msa1398680:CDS | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | - | tig0022278:81495-81514 | Msa1398680:CDS | 25.0% |
| TTGAACCAATTGATCACATT+TGG | - | tig0022278:80518-80537 | Msa1398680:CDS | 30.0% | |
| GATGATAAATTCTTCGTCTA+TGG | + | tig0022278:80764-80783 | None:intergenic | 30.0% | |
| ACGAAGAATTTATCATCAGT+TGG | - | tig0022278:80767-80786 | Msa1398680:CDS | 30.0% | |
| CGAAGAATTTATCATCAGTT+GGG | - | tig0022278:80768-80787 | Msa1398680:CDS | 30.0% | |
| TCAATCATTGGCAAACTAAT+AGG | + | tig0022278:80817-80836 | None:intergenic | 30.0% | |
| AACAAGTCCAAATGATTATG+TGG | - | tig0022278:80906-80925 | Msa1398680:CDS | 30.0% | |
| TAATGTCGATGAAACCAAAA+TGG | + | tig0022278:81014-81033 | None:intergenic | 30.0% | |
| ATCGACATTACATTCTACAA+TGG | - | tig0022278:81024-81043 | Msa1398680:CDS | 30.0% | |
| CATTACATTCTACAATGGTT+TGG | - | tig0022278:81029-81048 | Msa1398680:CDS | 30.0% | |
| !! | ACAAGTACTTAAGTTGGAAT+TGG | - | tig0022278:81275-81294 | Msa1398680:CDS | 30.0% |
| TTTGTCAAAAGTTGAGAGTT+TGG | - | tig0022278:81323-81342 | Msa1398680:CDS | 30.0% | |
| TTGTCAAAAGTTGAGAGTTT+GGG | - | tig0022278:81324-81343 | Msa1398680:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | tig0022278:81345-81364 | Msa1398680:CDS | 30.0% |
| !!! | AATGTTTTATTTGTGGGTGA+CGG | - | tig0022278:81351-81370 | Msa1398680:CDS | 30.0% |
| TGAGAAATATGAAGCTGATA+TGG | + | tig0022278:81388-81407 | None:intergenic | 30.0% | |
| ! | AACGTAAAACATGGAAGTTT+TGG | - | tig0022278:81504-81523 | Msa1398680:CDS | 30.0% |
| TTGAACCAATTGATCACATT+TGG | - | tig0022278:80518-80537 | Msa1398680:CDS | 30.0% | |
| GATGATAAATTCTTCGTCTA+TGG | + | tig0022278:80764-80783 | None:intergenic | 30.0% | |
| ACGAAGAATTTATCATCAGT+TGG | - | tig0022278:80767-80786 | Msa1398680:CDS | 30.0% | |
| CGAAGAATTTATCATCAGTT+GGG | - | tig0022278:80768-80787 | Msa1398680:CDS | 30.0% | |
| TCAATCATTGGCAAACTAAT+AGG | + | tig0022278:80817-80836 | None:intergenic | 30.0% | |
| AACAAGTCCAAATGATTATG+TGG | - | tig0022278:80906-80925 | Msa1398680:CDS | 30.0% | |
| TAATGTCGATGAAACCAAAA+TGG | + | tig0022278:81014-81033 | None:intergenic | 30.0% | |
| ATCGACATTACATTCTACAA+TGG | - | tig0022278:81024-81043 | Msa1398680:CDS | 30.0% | |
| CATTACATTCTACAATGGTT+TGG | - | tig0022278:81029-81048 | Msa1398680:CDS | 30.0% | |
| !! | ACAAGTACTTAAGTTGGAAT+TGG | - | tig0022278:81275-81294 | Msa1398680:CDS | 30.0% |
| TTTGTCAAAAGTTGAGAGTT+TGG | - | tig0022278:81323-81342 | Msa1398680:CDS | 30.0% | |
| TTGTCAAAAGTTGAGAGTTT+GGG | - | tig0022278:81324-81343 | Msa1398680:CDS | 30.0% | |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | tig0022278:81345-81364 | Msa1398680:CDS | 30.0% |
| !!! | AATGTTTTATTTGTGGGTGA+CGG | - | tig0022278:81351-81370 | Msa1398680:CDS | 30.0% |
| TGAGAAATATGAAGCTGATA+TGG | + | tig0022278:81388-81407 | None:intergenic | 30.0% | |
| ! | AACGTAAAACATGGAAGTTT+TGG | - | tig0022278:81504-81523 | Msa1398680:CDS | 30.0% |
| CCAAACCAAATGTGATCAAT+TGG | + | tig0022278:80526-80545 | None:intergenic | 35.0% | |
| CCAATTGATCACATTTGGTT+TGG | - | tig0022278:80523-80542 | Msa1398680:CDS | 35.0% | |
| TTACATTGCTCCTAAATTGG+TGG | + | tig0022278:80600-80619 | None:intergenic | 35.0% | |
| GCATTACATTGCTCCTAAAT+TGG | + | tig0022278:80603-80622 | None:intergenic | 35.0% | |
| ! | TTTCTGGACTCTTTTCTGAA+GGG | + | tig0022278:80639-80658 | None:intergenic | 35.0% |
| ! | TTTTCTGGACTCTTTTCTGA+AGG | + | tig0022278:80640-80659 | None:intergenic | 35.0% |
| !! | CTATACAAACATCGCTTTTC+TGG | + | tig0022278:80655-80674 | None:intergenic | 35.0% |
| AATGGATACACTCTATTTGC+AGG | + | tig0022278:80682-80701 | None:intergenic | 35.0% | |
| CTTAACAACAAGAGATGTTG+TGG | - | tig0022278:80715-80734 | Msa1398680:CDS | 35.0% | |
| ATAGGAGCAACATCCTTAAA+AGG | + | tig0022278:80799-80818 | None:intergenic | 35.0% | |
| ! | GCATAAAGTTACTTTGTCAG+TGG | - | tig0022278:80876-80895 | Msa1398680:CDS | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | - | tig0022278:80955-80974 | Msa1398680:CDS | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | - | tig0022278:80968-80987 | Msa1398680:CDS | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+CGG | - | tig0022278:81095-81114 | Msa1398680:CDS | 35.0% |
| TGGTGAGAAGGTTTATAAGT+AGG | - | tig0022278:81220-81239 | Msa1398680:CDS | 35.0% | |
| GGTGAGAAGGTTTATAAGTA+GGG | - | tig0022278:81221-81240 | Msa1398680:CDS | 35.0% | |
| AAGTTGGAATTGGATGACAA+AGG | - | tig0022278:81285-81304 | Msa1398680:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | tig0022278:81344-81363 | Msa1398680:CDS | 35.0% |
| !! | CTTTGAAGTGAGGTTTGTAA+GGG | + | tig0022278:81539-81558 | None:intergenic | 35.0% |
| CCAAACCAAATGTGATCAAT+TGG | + | tig0022278:80526-80545 | None:intergenic | 35.0% | |
| CCAATTGATCACATTTGGTT+TGG | - | tig0022278:80523-80542 | Msa1398680:CDS | 35.0% | |
| TTACATTGCTCCTAAATTGG+TGG | + | tig0022278:80600-80619 | None:intergenic | 35.0% | |
| GCATTACATTGCTCCTAAAT+TGG | + | tig0022278:80603-80622 | None:intergenic | 35.0% | |
| ! | TTTCTGGACTCTTTTCTGAA+GGG | + | tig0022278:80639-80658 | None:intergenic | 35.0% |
| ! | TTTTCTGGACTCTTTTCTGA+AGG | + | tig0022278:80640-80659 | None:intergenic | 35.0% |
| !! | CTATACAAACATCGCTTTTC+TGG | + | tig0022278:80655-80674 | None:intergenic | 35.0% |
| AATGGATACACTCTATTTGC+AGG | + | tig0022278:80682-80701 | None:intergenic | 35.0% | |
| CTTAACAACAAGAGATGTTG+TGG | - | tig0022278:80715-80734 | Msa1398680:CDS | 35.0% | |
| ATAGGAGCAACATCCTTAAA+AGG | + | tig0022278:80799-80818 | None:intergenic | 35.0% | |
| ! | GCATAAAGTTACTTTGTCAG+TGG | - | tig0022278:80876-80895 | Msa1398680:CDS | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | - | tig0022278:80955-80974 | Msa1398680:CDS | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | - | tig0022278:80968-80987 | Msa1398680:CDS | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+CGG | - | tig0022278:81095-81114 | Msa1398680:CDS | 35.0% |
| TGGTGAGAAGGTTTATAAGT+AGG | - | tig0022278:81220-81239 | Msa1398680:CDS | 35.0% | |
| GGTGAGAAGGTTTATAAGTA+GGG | - | tig0022278:81221-81240 | Msa1398680:CDS | 35.0% | |
| AAGTTGGAATTGGATGACAA+AGG | - | tig0022278:81285-81304 | Msa1398680:CDS | 35.0% | |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | tig0022278:81344-81363 | Msa1398680:CDS | 35.0% |
| !! | CTTTGAAGTGAGGTTTGTAA+GGG | + | tig0022278:81539-81558 | None:intergenic | 35.0% |
| !! | TTGGTTCTGTCTGCAAACAT+TGG | - | tig0022278:80542-80561 | Msa1398680:CDS | 40.0% |
| ATCAACACGACCACCAATTT+AGG | - | tig0022278:80587-80606 | Msa1398680:CDS | 40.0% | |
| TCTGAAGGGATCATTAGCAT+AGG | + | tig0022278:80625-80644 | None:intergenic | 40.0% | |
| ! | CAGTTGGGTGAATCCTTTTA+AGG | - | tig0022278:80783-80802 | Msa1398680:CDS | 40.0% |
| GCTGCAACCACATAATCATT+TGG | + | tig0022278:80916-80935 | None:intergenic | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | + | tig0022278:80951-80970 | None:intergenic | 40.0% | |
| ! | ATGCAAGACACTGACCATTT+TGG | - | tig0022278:80997-81016 | Msa1398680:CDS | 40.0% |
| TGTTATTCAAGTGACCCTTC+GGG | - | tig0022278:81096-81115 | Msa1398680:CDS | 40.0% | |
| AATTGGATGACAAAGGTGAG+AGG | - | tig0022278:81292-81311 | Msa1398680:CDS | 40.0% | |
| GAACCTATTCCTTATCCTAG+AGG | - | tig0022278:81459-81478 | Msa1398680:CDS | 40.0% | |
| !! | TCAAAAGGACCTCTAGGATA+AGG | + | tig0022278:81471-81490 | None:intergenic | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | - | tig0022278:81473-81492 | Msa1398680:CDS | 40.0% |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | - | tig0022278:81474-81493 | Msa1398680:CDS | 40.0% |
| !! | CCTTTGAAGTGAGGTTTGTA+AGG | + | tig0022278:81540-81559 | None:intergenic | 40.0% |
| CCTTACAAACCTCACTTCAA+AGG | - | tig0022278:81537-81556 | Msa1398680:CDS | 40.0% | |
| CAAACCTCACTTCAAAGGTA+TGG | - | tig0022278:81542-81561 | Msa1398680:CDS | 40.0% | |
| !! | TTGGTTCTGTCTGCAAACAT+TGG | - | tig0022278:80542-80561 | Msa1398680:CDS | 40.0% |
| ATCAACACGACCACCAATTT+AGG | - | tig0022278:80587-80606 | Msa1398680:CDS | 40.0% | |
| TCTGAAGGGATCATTAGCAT+AGG | + | tig0022278:80625-80644 | None:intergenic | 40.0% | |
| ! | CAGTTGGGTGAATCCTTTTA+AGG | - | tig0022278:80783-80802 | Msa1398680:CDS | 40.0% |
| GCTGCAACCACATAATCATT+TGG | + | tig0022278:80916-80935 | None:intergenic | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | + | tig0022278:80951-80970 | None:intergenic | 40.0% | |
| ! | ATGCAAGACACTGACCATTT+TGG | - | tig0022278:80997-81016 | Msa1398680:CDS | 40.0% |
| TGTTATTCAAGTGACCCTTC+GGG | - | tig0022278:81096-81115 | Msa1398680:CDS | 40.0% | |
| AATTGGATGACAAAGGTGAG+AGG | - | tig0022278:81292-81311 | Msa1398680:CDS | 40.0% | |
| GAACCTATTCCTTATCCTAG+AGG | - | tig0022278:81459-81478 | Msa1398680:CDS | 40.0% | |
| !! | TCAAAAGGACCTCTAGGATA+AGG | + | tig0022278:81471-81490 | None:intergenic | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | - | tig0022278:81473-81492 | Msa1398680:CDS | 40.0% |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | - | tig0022278:81474-81493 | Msa1398680:CDS | 40.0% |
| !! | CCTTTGAAGTGAGGTTTGTA+AGG | + | tig0022278:81540-81559 | None:intergenic | 40.0% |
| CCTTACAAACCTCACTTCAA+AGG | - | tig0022278:81537-81556 | Msa1398680:CDS | 40.0% | |
| CAAACCTCACTTCAAAGGTA+TGG | - | tig0022278:81542-81561 | Msa1398680:CDS | 40.0% | |
| !! | GGTGGTCGTGTTGATGATTA+AGG | + | tig0022278:80582-80601 | None:intergenic | 45.0% |
| TATGAAAGCTAGACAGCCAC+GGG | + | tig0022278:80950-80969 | None:intergenic | 45.0% | |
| TTCTCTGTTCCATACCCGAA+GGG | + | tig0022278:81113-81132 | None:intergenic | 45.0% | |
| ATTCTCTGTTCCATACCCGA+AGG | + | tig0022278:81114-81133 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | - | tig0022278:81196-81215 | Msa1398680:CDS | 45.0% | |
| AGGGTCAGAATGTGCAACAA+AGG | - | tig0022278:81240-81259 | Msa1398680:CDS | 45.0% | |
| !! | GGACCTCTAGGATAAGGAAT+AGG | + | tig0022278:81465-81484 | None:intergenic | 45.0% |
| CCCATATCAAAAGGACCTCT+AGG | + | tig0022278:81477-81496 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | + | tig0022278:81573-81592 | None:intergenic | 45.0% | |
| AAAAGGTGGCACAACCCATA+TGG | + | tig0022278:81574-81593 | None:intergenic | 45.0% | |
| !! | GGTGGTCGTGTTGATGATTA+AGG | + | tig0022278:80582-80601 | None:intergenic | 45.0% |
| TATGAAAGCTAGACAGCCAC+GGG | + | tig0022278:80950-80969 | None:intergenic | 45.0% | |
| TTCTCTGTTCCATACCCGAA+GGG | + | tig0022278:81113-81132 | None:intergenic | 45.0% | |
| ATTCTCTGTTCCATACCCGA+AGG | + | tig0022278:81114-81133 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | - | tig0022278:81196-81215 | Msa1398680:CDS | 45.0% | |
| AGGGTCAGAATGTGCAACAA+AGG | - | tig0022278:81240-81259 | Msa1398680:CDS | 45.0% | |
| !! | GGACCTCTAGGATAAGGAAT+AGG | + | tig0022278:81465-81484 | None:intergenic | 45.0% |
| CCCATATCAAAAGGACCTCT+AGG | + | tig0022278:81477-81496 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | + | tig0022278:81573-81592 | None:intergenic | 45.0% | |
| AAAAGGTGGCACAACCCATA+TGG | + | tig0022278:81574-81593 | None:intergenic | 45.0% | |
| AGATGTTGTGGCTCCAGTCA+TGG | - | tig0022278:80727-80746 | Msa1398680:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | - | tig0022278:80931-80950 | Msa1398680:CDS | 50.0% | |
| TGGTGTATGCCGTAACTCGT+TGG | - | tig0022278:81049-81068 | Msa1398680:CDS | 50.0% | |
| TTCAAGTGACCCTTCGGGTA+TGG | - | tig0022278:81101-81120 | Msa1398680:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | - | tig0022278:81200-81219 | Msa1398680:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | - | tig0022278:81208-81227 | Msa1398680:CDS | 50.0% | |
| !! | GGTGCCATACCTTTGAAGTG+AGG | + | tig0022278:81549-81568 | None:intergenic | 50.0% |
| AAGGTATGGCACCTCCCATA+TGG | - | tig0022278:81556-81575 | Msa1398680:CDS | 50.0% | |
| AGGTATGGCACCTCCCATAT+GGG | - | tig0022278:81557-81576 | Msa1398680:CDS | 50.0% | |
| ! | GGGTTGTGCCACCTTTTAAG+TGG | - | tig0022278:81577-81596 | Msa1398680:CDS | 50.0% |
| AGATGTTGTGGCTCCAGTCA+TGG | - | tig0022278:80727-80746 | Msa1398680:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | - | tig0022278:80931-80950 | Msa1398680:CDS | 50.0% | |
| TGGTGTATGCCGTAACTCGT+TGG | - | tig0022278:81049-81068 | Msa1398680:CDS | 50.0% | |
| TTCAAGTGACCCTTCGGGTA+TGG | - | tig0022278:81101-81120 | Msa1398680:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | - | tig0022278:81200-81219 | Msa1398680:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | - | tig0022278:81208-81227 | Msa1398680:CDS | 50.0% | |
| !! | GGTGCCATACCTTTGAAGTG+AGG | + | tig0022278:81549-81568 | None:intergenic | 50.0% |
| AAGGTATGGCACCTCCCATA+TGG | - | tig0022278:81556-81575 | Msa1398680:CDS | 50.0% | |
| AGGTATGGCACCTCCCATAT+GGG | - | tig0022278:81557-81576 | Msa1398680:CDS | 50.0% | |
| ! | GGGTTGTGCCACCTTTTAAG+TGG | - | tig0022278:81577-81596 | Msa1398680:CDS | 50.0% |
| GTTGTGGCTCCAGTCATGGC+TGG | - | tig0022278:80731-80750 | Msa1398680:CDS | 60.0% | |
| GGTGGCACAACCCATATGGG+AGG | + | tig0022278:81570-81589 | None:intergenic | 60.0% | |
| GTTGTGGCTCCAGTCATGGC+TGG | - | tig0022278:80731-80750 | Msa1398680:CDS | 60.0% | |
| GGTGGCACAACCCATATGGG+AGG | + | tig0022278:81570-81589 | None:intergenic | 60.0% | |
| GGTTGCGAGCCAGCCATGAC+TGG | + | tig0022278:80743-80762 | None:intergenic | 65.0% | |
| GGTTGCGAGCCAGCCATGAC+TGG | + | tig0022278:80743-80762 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022278 | gene | 80457 | 81605 | 80457 | ID=Msa1398680;Name=Msa1398680 |
| tig0022278 | mRNA | 80457 | 81605 | 80457 | ID=Msa1398680-mRNA-1;Parent=Msa1398680;Name=Msa1398680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|382 |
| tig0022278 | exon | 80457 | 81605 | 80457 | ID=Msa1398680-mRNA-1:exon:16762;Parent=Msa1398680-mRNA-1 |
| tig0022278 | CDS | 80457 | 81605 | 80457 | ID=Msa1398680-mRNA-1:cds;Parent=Msa1398680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
