Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398830 | XP_013450438.1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 847 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398830 | sp|F4I562|AP3M_ARATH | 78.019 | 414 | 87 | 1 | 1 | 410 | 1 | 414 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398830 | A0A072U533 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 847 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1084160 | Msa1398830 | 0.918098 | 2.369511e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398830 | MtrunA17_Chr7g0271601 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 847 |
| Msa1398830 | MtrunA17_Chr5g0413081 | 25.843 | 445 | 267 | 11 | 4 | 410 | 7 | 426 | 1.29e-45 | 162 |
| Msa1398830 | MtrunA17_Chr8g0368141 | 26.196 | 439 | 273 | 12 | 4 | 410 | 7 | 426 | 2.91e-45 | 162 |
| Msa1398830 | MtrunA17_Chr5g0400501 | 29.315 | 365 | 220 | 11 | 76 | 410 | 81 | 437 | 2.12e-44 | 159 |
| Msa1398830 | MtrunA17_Chr3g0141861 | 27.027 | 444 | 287 | 9 | 1 | 410 | 1 | 441 | 4.99e-44 | 159 |
| Msa1398830 | MtrunA17_Chr5g0427331 | 27.692 | 455 | 279 | 11 | 1 | 410 | 1 | 450 | 2.29e-43 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398830 | AT1G56590.1 | 78.019 | 414 | 87 | 1 | 1 | 410 | 1 | 414 | 0.0 | 701 |
| Msa1398830 | AT1G60780.1 | 29.494 | 356 | 212 | 8 | 79 | 410 | 86 | 426 | 3.82e-47 | 167 |
| Msa1398830 | AT1G10730.1 | 28.371 | 356 | 216 | 8 | 79 | 410 | 86 | 426 | 2.26e-44 | 159 |
| Msa1398830 | AT4G24550.2 | 27.974 | 454 | 278 | 12 | 1 | 410 | 2 | 450 | 7.13e-44 | 159 |
| Msa1398830 | AT4G24550.3 | 28.756 | 386 | 236 | 9 | 1 | 349 | 2 | 385 | 5.40e-43 | 155 |
| Msa1398830 | AT4G24550.1 | 29.333 | 375 | 226 | 9 | 1 | 338 | 2 | 374 | 1.91e-42 | 153 |
| Msa1398830 | AT5G46630.1 | 28.767 | 365 | 222 | 11 | 76 | 410 | 81 | 437 | 1.27e-41 | 152 |
| Msa1398830 | AT5G46630.2 | 29.023 | 348 | 210 | 10 | 76 | 394 | 81 | 420 | 2.22e-40 | 149 |
Find 122 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAATGCCAATATTTAA+TGG | 0.158262 | tig0022300:-5899 | None:intergenic |
| AAGACTTTGCTAACAATATT+TGG | 0.160199 | tig0022300:-3611 | None:intergenic |
| AACTGTGGCTTTACATATAT+TGG | 0.163939 | tig0022300:-5139 | None:intergenic |
| GCTCCATTTGTAACTGGTTT+TGG | 0.197605 | tig0022300:+2524 | Msa1398830:CDS |
| ATCTACATAAACTTCATTAT+TGG | 0.206034 | tig0022300:-3729 | None:intergenic |
| ACAAGTTTCAGATGACTTAA+TGG | 0.227447 | tig0022300:-5721 | None:intergenic |
| AATAACAAAGTTGTCTTTGA+TGG | 0.266110 | tig0022300:-2815 | None:intergenic |
| AAAATGTTTCCATTAAATAT+TGG | 0.278515 | tig0022300:+5890 | Msa1398830:three_prime_UTR |
| ATCATCTCTTGCAGGATATT+AGG | 0.289281 | tig0022300:-3581 | None:intergenic |
| AGTTGAAATGCCACCTTTGA+TGG | 0.290368 | tig0022300:+2648 | Msa1398830:CDS |
| AATGGGTTGGTGAAGCAATA+AGG | 0.291383 | tig0022300:-2576 | None:intergenic |
| AATGTGAGCGACACGCTTCC+AGG | 0.294268 | tig0022300:+3659 | Msa1398830:CDS |
| ACTGTGGCTTTACATATATT+GGG | 0.306135 | tig0022300:-5138 | None:intergenic |
| CACAAATGAAAGAATTTGAT+TGG | 0.306178 | tig0022300:-4908 | None:intergenic |
| TCCACCCTTGTGTTAGATTT+CGG | 0.307795 | tig0022300:+4875 | Msa1398830:CDS |
| TTGATCGCTCCATTTGTAAC+TGG | 0.321452 | tig0022300:+2518 | Msa1398830:CDS |
| CTTGTGTTAGATTTCGGCCT+TGG | 0.329672 | tig0022300:+4881 | Msa1398830:CDS |
| ACGGAATCAACTGTCTTTCC+AGG | 0.329908 | tig0022300:-5217 | None:intergenic |
| AATTTAAGCTAATGAATTAC+AGG | 0.356573 | tig0022300:+4944 | Msa1398830:CDS |
| CAACTTTGTTATTGTTTATG+AGG | 0.362750 | tig0022300:+2825 | Msa1398830:CDS |
| GCGGAGCTATCATCTCTTGC+AGG | 0.367041 | tig0022300:-3589 | None:intergenic |
| TTGATTCTGTACATGAGATT+TGG | 0.367165 | tig0022300:+5745 | Msa1398830:three_prime_UTR |
| ATGGGTTGGTGAAGCAATAA+GGG | 0.374128 | tig0022300:-2575 | None:intergenic |
| CTTAGGGTCGGCTGTTCTCC+AGG | 0.381162 | tig0022300:-3702 | None:intergenic |
| GGGCTTTATCCTTTGGGATC+CGG | 0.381952 | tig0022300:-5485 | None:intergenic |
| ACTTCATTATTGGCATACTT+AGG | 0.389102 | tig0022300:-3719 | None:intergenic |
| CTTCATTATTGGCATACTTA+GGG | 0.391320 | tig0022300:-3718 | None:intergenic |
| ATTAGCTTAAATTGTCCATC+AGG | 0.393580 | tig0022300:-4934 | None:intergenic |
| TGGTCTGCAAATAGACAAAC+TGG | 0.402645 | tig0022300:+5608 | Msa1398830:CDS |
| TGTAGATCTTGTAGAACAAA+TGG | 0.407054 | tig0022300:+3745 | Msa1398830:CDS |
| TTGTGTTAGATTTCGGCCTT+GGG | 0.413114 | tig0022300:+4882 | Msa1398830:CDS |
| TTCATTCAGGGATGGTACTC+TGG | 0.434182 | tig0022300:+4747 | Msa1398830:intron |
| AAATGGATGCAACAATAAAC+AGG | 0.439022 | tig0022300:+3762 | Msa1398830:CDS |
| CTGGGTGCGTGGGTGGGCAA+TGG | 0.442233 | tig0022300:+2265 | Msa1398830:five_prime_UTR |
| AATAAGGGGTTGTTGCTTGA+AGG | 0.446589 | tig0022300:-2560 | None:intergenic |
| ACACAAGATGCTGTGCTGCC+TGG | 0.448749 | tig0022300:-3677 | None:intergenic |
| ATCCTTTGGGATCCGGCCAA+TGG | 0.456803 | tig0022300:-5478 | None:intergenic |
| ATCATGGGTGTCGCTCTCTC+TGG | 0.456816 | tig0022300:+5588 | Msa1398830:CDS |
| CTTTCATTTGTGCCTCCTGA+TGG | 0.464169 | tig0022300:+4919 | Msa1398830:CDS |
| CTCGAAAACCTTTGTAGAAA+CGG | 0.465292 | tig0022300:-5650 | None:intergenic |
| TACATGACTGGGTGCGTGGG+TGG | 0.465749 | tig0022300:+2258 | None:intergenic |
| AAGCTGAAACTGAACGTTAA+CGG | 0.467260 | tig0022300:-5236 | None:intergenic |
| GATGTAATCAATGATTATCT+TGG | 0.467330 | tig0022300:+2775 | Msa1398830:CDS |
| GACTTCAAATTCACCTGCTC+GGG | 0.470982 | tig0022300:-5679 | None:intergenic |
| GGAACATTAGTGCTTGAGAC+TGG | 0.475763 | tig0022300:+5519 | Msa1398830:CDS |
| CCTAAAATCCACTTGAAATG+TGG | 0.478562 | tig0022300:-5565 | None:intergenic |
| GCAAATGAAAGAGTTAAATC+AGG | 0.480613 | tig0022300:-4823 | None:intergenic |
| GCCACCTTTGATGGCCATTG+AGG | 0.482311 | tig0022300:+2657 | Msa1398830:CDS |
| TTTCGAGCTCTTACCCGAGC+AGG | 0.486627 | tig0022300:+5666 | Msa1398830:CDS |
| ATCCCAAAACCAGTTACAAA+TGG | 0.489182 | tig0022300:-2527 | None:intergenic |
| TAACTGAACTGACCCGGAAT+CGG | 0.489561 | tig0022300:-2388 | None:intergenic |
| CATGCACTTGGTCCATTGGC+CGG | 0.492184 | tig0022300:+5466 | Msa1398830:CDS |
| GTAATCAATGATTATCTTGG+CGG | 0.494450 | tig0022300:+2778 | Msa1398830:CDS |
| GGCATGTATTATTACCTCAA+TGG | 0.494893 | tig0022300:-2671 | None:intergenic |
| CAGACATGCACTTGGTCCAT+TGG | 0.496290 | tig0022300:+5462 | Msa1398830:intron |
| ATATTAGGTTCTGTAGTTAG+TGG | 0.496799 | tig0022300:-3566 | None:intergenic |
| GCACAGCATCTTGTGTTCCC+TGG | 0.499583 | tig0022300:+3684 | Msa1398830:CDS |
| CTAAAATCCACTTGAAATGT+GGG | 0.503832 | tig0022300:-5564 | None:intergenic |
| CACTAATGTTCCAGACATTG+AGG | 0.507964 | tig0022300:-5508 | None:intergenic |
| AAAGTCTTGAGCGTTGTGAC+TGG | 0.511584 | tig0022300:+3626 | Msa1398830:CDS |
| CTGGTGAAGTGTGAGATTAA+TGG | 0.523967 | tig0022300:+4766 | Msa1398830:CDS |
| TGTCTTTCCCACATTTCAAG+TGG | 0.525867 | tig0022300:+5557 | Msa1398830:CDS |
| GAGATTTGGTTGCATGTACA+TGG | 0.526688 | tig0022300:+5759 | Msa1398830:three_prime_UTR |
| CTCACATCATCAAGGATTGA+AGG | 0.531256 | tig0022300:-4850 | None:intergenic |
| CAAGTAAATTCCCACATCAC+TGG | 0.533800 | tig0022300:+4796 | Msa1398830:CDS |
| ATTATTGGCATACTTAGGGT+CGG | 0.538133 | tig0022300:-3714 | None:intergenic |
| GAGCAGGTGAATTTGAAGTC+AGG | 0.540257 | tig0022300:+5682 | Msa1398830:CDS |
| AAAACCTTTGTAGAAACGGT+AGG | 0.541922 | tig0022300:-5646 | None:intergenic |
| TTTGGTTGCATGTACATGGC+TGG | 0.543947 | tig0022300:+5763 | Msa1398830:three_prime_UTR |
| ACTAATGTTCCAGACATTGA+GGG | 0.555481 | tig0022300:-5507 | None:intergenic |
| GGTTGTTGCTTGAAGGAATG+AGG | 0.557040 | tig0022300:-2553 | None:intergenic |
| TGCCGTCTTAATGTAATGGT+TGG | 0.558596 | tig0022300:+5181 | Msa1398830:CDS |
| TGACTTCAAATTCACCTGCT+CGG | 0.560219 | tig0022300:-5680 | None:intergenic |
| TACTTTAGTAGTGAGTGAAA+CGG | 0.560713 | tig0022300:+5832 | Msa1398830:three_prime_UTR |
| TTTATACATGACTGGGTGCG+TGG | 0.560839 | tig0022300:+2254 | None:intergenic |
| AGAATTTGATTGGATTCCCA+AGG | 0.564413 | tig0022300:-4898 | None:intergenic |
| GTACCCTACCGTTTCTACAA+AGG | 0.567672 | tig0022300:+5642 | Msa1398830:CDS |
| AAGCCACAGTTGACTTCAGA+TGG | 0.571629 | tig0022300:+5151 | Msa1398830:CDS |
| AGCGAAGGAAGTGATGGAAA+TGG | 0.572542 | tig0022300:+2293 | Msa1398830:five_prime_UTR |
| AAGGAAGTGATGGAAATGGT+TGG | 0.574602 | tig0022300:+2297 | Msa1398830:five_prime_UTR |
| GACATGCCGTCTTAATGTAA+TGG | 0.577164 | tig0022300:+5177 | Msa1398830:CDS |
| ACTTTGCTAACAATATTTGG+CGG | 0.578630 | tig0022300:-3608 | None:intergenic |
| CAAGGCCGAAATCTAACACA+AGG | 0.579655 | tig0022300:-4880 | None:intergenic |
| AATCAGGTAGACCAGTGATG+TGG | 0.580214 | tig0022300:-4807 | None:intergenic |
| GTTGGCATGAGAAATGATCC+TGG | 0.582165 | tig0022300:+5199 | Msa1398830:CDS |
| GCTGATCTGACTTCAACTCA+TGG | 0.582192 | tig0022300:+5277 | Msa1398830:CDS |
| GTGTGAAGCGAAGGAAGTGA+TGG | 0.583092 | tig0022300:+2287 | Msa1398830:five_prime_UTR |
| AGCTTAAATTGTCCATCAGG+AGG | 0.585405 | tig0022300:-4931 | None:intergenic |
| TGGGCAATGGTGTGAAGCGA+AGG | 0.585821 | tig0022300:+2278 | Msa1398830:five_prime_UTR |
| ATCAGGTAGACCAGTGATGT+GGG | 0.586208 | tig0022300:-4806 | None:intergenic |
| ACATGACTGGGTGCGTGGGT+GGG | 0.586761 | tig0022300:+2259 | None:intergenic |
| AGTTAACATTCTTTCTAACA+AGG | 0.590551 | tig0022300:+5303 | Msa1398830:CDS |
| GTCCATTGGCCGGATCCCAA+AGG | 0.591648 | tig0022300:+5476 | Msa1398830:CDS |
| CTGTGGCTTTACATATATTG+GGG | 0.592300 | tig0022300:-5137 | None:intergenic |
| CTTCAATCCTTGATGATGTG+AGG | 0.593007 | tig0022300:+4851 | Msa1398830:CDS |
| ACTTGGAAAAGATAATGGGT+TGG | 0.595436 | tig0022300:-2589 | None:intergenic |
| ATTACCTCAATGGCCATCAA+AGG | 0.597567 | tig0022300:-2661 | None:intergenic |
| ATTAGTGCTTGAGACTGGAA+TGG | 0.599757 | tig0022300:+5524 | Msa1398830:CDS |
| CACAGTTGACTTCAGATGGT+GGG | 0.602716 | tig0022300:+5155 | Msa1398830:CDS |
| TGATCTATCAGACATGCACT+TGG | 0.603227 | tig0022300:+5454 | Msa1398830:intron |
| GTCCATGTTTATACATGACT+GGG | 0.604905 | tig0022300:+2247 | None:intergenic |
| ATTCTAGAGAAACAACTCAC+TGG | 0.606650 | tig0022300:+2487 | Msa1398830:CDS |
| ACCTCAATGGCCATCAAAGG+TGG | 0.612533 | tig0022300:-2658 | None:intergenic |
| TGCCAACCATTACATTAAGA+CGG | 0.616417 | tig0022300:-5183 | None:intergenic |
| CTAATGTTCCAGACATTGAG+GGG | 0.617817 | tig0022300:-5506 | None:intergenic |
| AAACCTTTGTAGAAACGGTA+GGG | 0.621652 | tig0022300:-5645 | None:intergenic |
| GGTGGAACCTCACATCATCA+AGG | 0.621797 | tig0022300:-4858 | None:intergenic |
| AGATCAGCTGATAAGATGCA+AGG | 0.629147 | tig0022300:-5262 | None:intergenic |
| TGGGTTGGTGAAGCAATAAG+GGG | 0.630368 | tig0022300:-2574 | None:intergenic |
| CCACAGTTGACTTCAGATGG+TGG | 0.636618 | tig0022300:+5154 | Msa1398830:CDS |
| TTAGGGTCGGCTGTTCTCCA+GGG | 0.642045 | tig0022300:-3701 | None:intergenic |
| TACTAAAGTACTTTGAAACC+AGG | 0.647916 | tig0022300:-5819 | None:intergenic |
| GCCGAAATCTAACACAAGGG+TGG | 0.652122 | tig0022300:-4876 | None:intergenic |
| TTACATCAGCTACCCTACAA+AGG | 0.663264 | tig0022300:-2759 | None:intergenic |
| CCACCATCTGAAGTCAACTG+TGG | 0.668735 | tig0022300:-5154 | None:intergenic |
| AAGGCCGAAATCTAACACAA+GGG | 0.679990 | tig0022300:-4879 | None:intergenic |
| TTATACATGACTGGGTGCGT+GGG | 0.683298 | tig0022300:+2255 | None:intergenic |
| TAATGTTCCAGACATTGAGG+GGG | 0.697874 | tig0022300:-5505 | None:intergenic |
| GAAGTGTGAGATTAATGGTG+AGG | 0.707798 | tig0022300:+4771 | Msa1398830:CDS |
| TACAAATGGAGCGATCAACA+CGG | 0.712287 | tig0022300:-2513 | None:intergenic |
| TCAGCTGATAAGATGCAAGG+AGG | 0.745768 | tig0022300:-5259 | None:intergenic |
| TTGGATGAGATGATAGACAA+TGG | 0.749272 | tig0022300:+3539 | Msa1398830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATTAAATTGAAAATT+GGG | - | tig0022300:2438-2457 | None:intergenic | 10.0% |
| !! | AAATTGATTAAATTGAAAAT+TGG | - | tig0022300:2439-2458 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTCTTAAAATTC+TGG | + | tig0022300:5073-5092 | Msa1398830:intron | 10.0% |
| !!! | TTTTATTTTCTTAAAATTCT+GGG | + | tig0022300:5074-5093 | Msa1398830:intron | 10.0% |
| !! | AACAATTATGTTATTAGATT+CGG | - | tig0022300:3148-3167 | None:intergenic | 15.0% |
| !! | TAATAACATAATTGTTATAG+AGG | + | tig0022300:3152-3171 | Msa1398830:intron | 15.0% |
| !!! | TCTTAACTTTGATAATTTTA+TGG | + | tig0022300:3815-3834 | Msa1398830:intron | 15.0% |
| !!! | CTTAACTTTGATAATTTTAT+GGG | + | tig0022300:3816-3835 | Msa1398830:intron | 15.0% |
| !!! | GTCTTATTTTTAAAAATATC+TGG | + | tig0022300:3863-3882 | Msa1398830:intron | 15.0% |
| !! | AATTTAATGTGTATAAGTTA+AGG | - | tig0022300:4282-4301 | None:intergenic | 15.0% |
| !!! | TTGTTATTATGTTTGATAAA+TGG | + | tig0022300:4355-4374 | Msa1398830:intron | 15.0% |
| !! | AAAATGTTTCCATTAAATAT+TGG | + | tig0022300:5890-5909 | Msa1398830:three_prime_UTR | 15.0% |
| !! | AAAAACTTGGAAAAGATAAT+GGG | - | tig0022300:2596-2615 | None:intergenic | 20.0% |
| !! | AACTAACAACATATGATTAT+TGG | + | tig0022300:2886-2905 | Msa1398830:intron | 20.0% |
| !! | ACTAACAACATATGATTATT+GGG | + | tig0022300:2887-2906 | Msa1398830:intron | 20.0% |
| !! | AACCAAATAAATGATGAAAA+CGG | + | tig0022300:3178-3197 | Msa1398830:intron | 20.0% |
| !!! | TTTGATTTGTTGTTTTGTTT+AGG | + | tig0022300:3479-3498 | Msa1398830:intron | 20.0% |
| !! | ATCTACATAAACTTCATTAT+TGG | - | tig0022300:3732-3751 | None:intergenic | 20.0% |
| !!! | AATTTATAGTAAAGCATCTT+AGG | + | tig0022300:4298-4317 | Msa1398830:intron | 20.0% |
| !! | AGAAAAGAAACTAAATATCA+CGG | - | tig0022300:4506-4525 | None:intergenic | 20.0% |
| !! | AATTTAAGCTAATGAATTAC+AGG | + | tig0022300:4944-4963 | Msa1398830:CDS | 20.0% |
| !!! | TTTTAGATTCAAAATACAAG+TGG | - | tig0022300:5874-5893 | None:intergenic | 20.0% |
| ! | AATTGAAGAAAAGGAAAGAA+GGG | - | tig0022300:2415-2434 | None:intergenic | 25.0% |
| ! | AAAATTGGGAATTGAAGAAA+AGG | - | tig0022300:2424-2443 | None:intergenic | 25.0% |
| ! | GAAAAACTTGGAAAAGATAA+TGG | - | tig0022300:2597-2616 | None:intergenic | 25.0% |
| ! | GGAACTAAAAATGAATTGAA+TGG | - | tig0022300:2741-2760 | None:intergenic | 25.0% |
| !!! | TTCATTTTTAGTTCCTTTGT+AGG | + | tig0022300:2746-2765 | Msa1398830:intron | 25.0% |
| !!! | TCATTTTTAGTTCCTTTGTA+GGG | + | tig0022300:2747-2766 | Msa1398830:intron | 25.0% |
| ! | GATGTAATCAATGATTATCT+TGG | + | tig0022300:2775-2794 | Msa1398830:CDS | 25.0% |
| ! | AATAACAAAGTTGTCTTTGA+TGG | - | tig0022300:2818-2837 | None:intergenic | 25.0% |
| !!! | CAACTTTGTTATTGTTTATG+AGG | + | tig0022300:2825-2844 | Msa1398830:CDS | 25.0% |
| ! | AGACAGTTAAATAATACAAC+TGG | + | tig0022300:3011-3030 | Msa1398830:intron | 25.0% |
| !! | AACCGTTTTCATCATTTATT+TGG | - | tig0022300:3183-3202 | None:intergenic | 25.0% |
| ! | TATTGTTGTGTACAAATACT+TGG | - | tig0022300:3324-3343 | None:intergenic | 25.0% |
| ! | TTGTACACAACAATAACAAT+CGG | + | tig0022300:3329-3348 | Msa1398830:intron | 25.0% |
| ! | ACAAAACAACAAATCAAAGT+GGG | - | tig0022300:3477-3496 | None:intergenic | 25.0% |
| ! | AACAAAACAACAAATCAAAG+TGG | - | tig0022300:3478-3497 | None:intergenic | 25.0% |
| ! | AAGACTTTGCTAACAATATT+TGG | - | tig0022300:3614-3633 | None:intergenic | 25.0% |
| ! | TATAAGGAGATAGTTATGTT+AGG | + | tig0022300:4037-4056 | Msa1398830:intron | 25.0% |
| ! | ATAAGGAGATAGTTATGTTA+GGG | + | tig0022300:4038-4057 | Msa1398830:intron | 25.0% |
| ! | ATTTGACTAAGTTATACGTT+GGG | - | tig0022300:4072-4091 | None:intergenic | 25.0% |
| ! | ATAACTTAGTCAAATCCTTA+CGG | + | tig0022300:4077-4096 | Msa1398830:intron | 25.0% |
| !! | TTGAAAACTATTTCTCTGAT+TGG | + | tig0022300:4167-4186 | Msa1398830:intron | 25.0% |
| ! | ATTATGTTTGATAAATGGCA+AGG | + | tig0022300:4360-4379 | Msa1398830:intron | 25.0% |
| ! | ATAAAATTTCAGCCGATATA+AGG | - | tig0022300:4632-4651 | None:intergenic | 25.0% |
| ! | ATGAAAGAAGTTGAAAGAAA+TGG | - | tig0022300:4707-4726 | None:intergenic | 25.0% |
| !! | CATACTTGTTGCTAAAAATT+TGG | + | tig0022300:4724-4743 | Msa1398830:intron | 25.0% |
| !! | CTAAAAATTTGGTTCATTCA+GGG | + | tig0022300:4735-4754 | Msa1398830:intron | 25.0% |
| ! | CACAAATGAAAGAATTTGAT+TGG | - | tig0022300:4911-4930 | None:intergenic | 25.0% |
| ! | AGTTAACATTCTTTCTAACA+AGG | + | tig0022300:5303-5322 | Msa1398830:CDS | 25.0% |
| !! | AAGGTACTTACTTAATAAAC+AGG | + | tig0022300:5322-5341 | Msa1398830:intron | 25.0% |
| !!! | AAGTTGATGTATTTTTATCC+TGG | + | tig0022300:5801-5820 | Msa1398830:three_prime_UTR | 25.0% |
| ! | TCATGAATGCCAATATTTAA+TGG | - | tig0022300:5902-5921 | None:intergenic | 25.0% |
| GAATTGAAGAAAAGGAAAGA+AGG | - | tig0022300:2416-2435 | None:intergenic | 30.0% | |
| TTCCTATGAATTGCAAATCA+TGG | - | tig0022300:2695-2714 | None:intergenic | 30.0% | |
| GTAATCAATGATTATCTTGG+CGG | + | tig0022300:2778-2797 | Msa1398830:CDS | 30.0% | |
| ACAACATATGATTATTGGGT+TGG | + | tig0022300:2891-2910 | Msa1398830:intron | 30.0% | |
| ! | TTTTGGATTGATCGTAGTAT+AGG | + | tig0022300:3260-3279 | Msa1398830:intron | 30.0% |
| CAAAACAACAAATCAAAGTG+GGG | - | tig0022300:3476-3495 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTAATGTAGCTGT+TGG | + | tig0022300:3520-3539 | Msa1398830:intron | 30.0% |
| ATATTAGGTTCTGTAGTTAG+TGG | - | tig0022300:3569-3588 | None:intergenic | 30.0% | |
| ACTTTGCTAACAATATTTGG+CGG | - | tig0022300:3611-3630 | None:intergenic | 30.0% | |
| CTTCATTATTGGCATACTTA+GGG | - | tig0022300:3721-3740 | None:intergenic | 30.0% | |
| ACTTCATTATTGGCATACTT+AGG | - | tig0022300:3722-3741 | None:intergenic | 30.0% | |
| TGTAGATCTTGTAGAACAAA+TGG | + | tig0022300:3745-3764 | Msa1398830:CDS | 30.0% | |
| AAATGGATGCAACAATAAAC+AGG | + | tig0022300:3762-3781 | Msa1398830:CDS | 30.0% | |
| ATAGATTATGTGTTCGACTT+CGG | + | tig0022300:3939-3958 | Msa1398830:intron | 30.0% | |
| ATAATAATGCCTCCTTGAAA+AGG | - | tig0022300:3967-3986 | None:intergenic | 30.0% | |
| GATTTGACTAAGTTATACGT+TGG | - | tig0022300:4073-4092 | None:intergenic | 30.0% | |
| !! | TATTTTTGCACCTCTAATCT+GGG | + | tig0022300:4209-4228 | Msa1398830:intron | 30.0% |
| GTGTATAAGTTAAGGACATA+AGG | - | tig0022300:4274-4293 | None:intergenic | 30.0% | |
| CATATATGAATGATTTCAGC+TGG | - | tig0022300:4335-4354 | None:intergenic | 30.0% | |
| !! | CACAACTTCATTTCTAGTAA+AGG | + | tig0022300:4465-4484 | Msa1398830:intron | 30.0% |
| ATAAGGTTTCACAAGTTCAA+AGG | - | tig0022300:4615-4634 | None:intergenic | 30.0% | |
| GAACTTGTGAAACCTTATAT+CGG | + | tig0022300:4617-4636 | Msa1398830:intron | 30.0% | |
| TGCATAAATACAGACTACTA+AGG | - | tig0022300:4684-4703 | None:intergenic | 30.0% | |
| ! | GCTAAAAATTTGGTTCATTC+AGG | + | tig0022300:4734-4753 | Msa1398830:intron | 30.0% |
| GCAAATGAAAGAGTTAAATC+AGG | - | tig0022300:4826-4845 | None:intergenic | 30.0% | |
| ! | ATTAGCTTAAATTGTCCATC+AGG | - | tig0022300:4937-4956 | None:intergenic | 30.0% |
| AACGGTTTCAAATCCTAATT+AGG | - | tig0022300:4995-5014 | None:intergenic | 30.0% | |
| ! | TAGGATTTGAAACCGTTATT+TGG | + | tig0022300:4998-5017 | Msa1398830:intron | 30.0% |
| ! | AGGATTTGAAACCGTTATTT+GGG | + | tig0022300:4999-5018 | Msa1398830:intron | 30.0% |
| CAATATGACTTCCCAAATAA+CGG | - | tig0022300:5013-5032 | None:intergenic | 30.0% | |
| GAGTGTTAAAATCTGTTTCA+TGG | + | tig0022300:5040-5059 | Msa1398830:intron | 30.0% | |
| ! | ACTGTGGCTTTACATATATT+GGG | - | tig0022300:5141-5160 | None:intergenic | 30.0% |
| ! | AACTGTGGCTTTACATATAT+TGG | - | tig0022300:5142-5161 | None:intergenic | 30.0% |
| ATCTGACTATTTAGACTTGA+TGG | - | tig0022300:5383-5402 | None:intergenic | 30.0% | |
| CTAAAATCCACTTGAAATGT+GGG | - | tig0022300:5567-5586 | None:intergenic | 30.0% | |
| ACAAGTTTCAGATGACTTAA+TGG | - | tig0022300:5724-5743 | None:intergenic | 30.0% | |
| TTGATTCTGTACATGAGATT+TGG | + | tig0022300:5745-5764 | Msa1398830:three_prime_UTR | 30.0% | |
| !! | TACTAAAGTACTTTGAAACC+AGG | - | tig0022300:5822-5841 | None:intergenic | 30.0% |
| TACTTTAGTAGTGAGTGAAA+CGG | + | tig0022300:5832-5851 | Msa1398830:three_prime_UTR | 30.0% | |
| ! | ATTTTTCTTCTCTCCGATTC+CGG | + | tig0022300:2375-2394 | Msa1398830:CDS | 35.0% |
| ! | ATTCTAGAGAAACAACTCAC+TGG | + | tig0022300:2487-2506 | Msa1398830:CDS | 35.0% |
| !!! | CTCCATTTGTAACTGGTTTT+GGG | + | tig0022300:2525-2544 | Msa1398830:CDS | 35.0% |
| ATCCCAAAACCAGTTACAAA+TGG | - | tig0022300:2530-2549 | None:intergenic | 35.0% | |
| !! | ACTTGGAAAAGATAATGGGT+TGG | - | tig0022300:2592-2611 | None:intergenic | 35.0% |
| GGCATGTATTATTACCTCAA+TGG | - | tig0022300:2674-2693 | None:intergenic | 35.0% | |
| ! | TGCCATGATTTGCAATTCAT+AGG | + | tig0022300:2690-2709 | Msa1398830:intron | 35.0% |
| !! | TTGTAGTCATTGTGCCATTT+GGG | + | tig0022300:3223-3242 | Msa1398830:intron | 35.0% |
| AAGAGGCAAAAGTAGAAGAA+AGG | - | tig0022300:3396-3415 | None:intergenic | 35.0% | |
| TTTCAGAGCAAACGTTACAA+GGG | - | tig0022300:3421-3440 | None:intergenic | 35.0% | |
| ! | TTTTCAGAGCAAACGTTACA+AGG | - | tig0022300:3422-3441 | None:intergenic | 35.0% |
| TTGGATGAGATGATAGACAA+TGG | + | tig0022300:3539-3558 | Msa1398830:CDS | 35.0% | |
| ATCATCTCTTGCAGGATATT+AGG | - | tig0022300:3584-3603 | None:intergenic | 35.0% | |
| ATTATTGGCATACTTAGGGT+CGG | - | tig0022300:3717-3736 | None:intergenic | 35.0% | |
| TGTATTTGATTCATGCCGTA+AGG | - | tig0022300:4095-4114 | None:intergenic | 35.0% | |
| !! | GTATTTTTGCACCTCTAATC+TGG | + | tig0022300:4208-4227 | Msa1398830:intron | 35.0% |
| ! | AAATTTGGTTCATTCAGGGA+TGG | + | tig0022300:4739-4758 | Msa1398830:intron | 35.0% |
| AGAATTTGATTGGATTCCCA+AGG | - | tig0022300:4901-4920 | None:intergenic | 35.0% | |
| CTATGTCTGATGTCCTAATT+AGG | + | tig0022300:4979-4998 | Msa1398830:intron | 35.0% | |
| ! | CTGTGGCTTTACATATATTG+GGG | - | tig0022300:5140-5159 | None:intergenic | 35.0% |
| TGCCAACCATTACATTAAGA+CGG | - | tig0022300:5186-5205 | None:intergenic | 35.0% | |
| AAGCTGAAACTGAACGTTAA+CGG | - | tig0022300:5239-5258 | None:intergenic | 35.0% | |
| TCTGATAGATCACGATGTAA+AGG | - | tig0022300:5446-5465 | None:intergenic | 35.0% | |
| ACTAATGTTCCAGACATTGA+GGG | - | tig0022300:5510-5529 | None:intergenic | 35.0% | |
| CCTAAAATCCACTTGAAATG+TGG | - | tig0022300:5568-5587 | None:intergenic | 35.0% | |
| !! | CCACATTTCAAGTGGATTTT+AGG | + | tig0022300:5565-5584 | Msa1398830:CDS | 35.0% |
| !!! | TCAAGTGGATTTTAGGATCA+TGG | + | tig0022300:5572-5591 | Msa1398830:CDS | 35.0% |
| !!! | CAAGTGGATTTTAGGATCAT+GGG | + | tig0022300:5573-5592 | Msa1398830:CDS | 35.0% |
| AAACCTTTGTAGAAACGGTA+GGG | - | tig0022300:5648-5667 | None:intergenic | 35.0% | |
| AAAACCTTTGTAGAAACGGT+AGG | - | tig0022300:5649-5668 | None:intergenic | 35.0% | |
| CTCGAAAACCTTTGTAGAAA+CGG | - | tig0022300:5653-5672 | None:intergenic | 35.0% | |
| ! | AAGGAAGTGATGGAAATGGT+TGG | + | tig0022300:2297-2316 | Msa1398830:five_prime_UTR | 40.0% |
| ! | TTTTTCTTCTCTCCGATTCC+GGG | + | tig0022300:2376-2395 | Msa1398830:CDS | 40.0% |
| CGATCTTGATTCATTCAGAG+AGG | + | tig0022300:2462-2481 | Msa1398830:intron | 40.0% | |
| TACAAATGGAGCGATCAACA+CGG | - | tig0022300:2516-2535 | None:intergenic | 40.0% | |
| TTGATCGCTCCATTTGTAAC+TGG | + | tig0022300:2518-2537 | Msa1398830:CDS | 40.0% | |
| !! | GCTCCATTTGTAACTGGTTT+TGG | + | tig0022300:2524-2543 | Msa1398830:CDS | 40.0% |
| ! | AATAAGGGGTTGTTGCTTGA+AGG | - | tig0022300:2563-2582 | None:intergenic | 40.0% |
| !! | ATGGGTTGGTGAAGCAATAA+GGG | - | tig0022300:2578-2597 | None:intergenic | 40.0% |
| !! | AATGGGTTGGTGAAGCAATA+AGG | - | tig0022300:2579-2598 | None:intergenic | 40.0% |
| ! | CTTTTCCAAGTTTTTCGCGA+TGG | + | tig0022300:2601-2620 | Msa1398830:CDS | 40.0% |
| TGATTCCATCGCGAAAAACT+TGG | - | tig0022300:2609-2628 | None:intergenic | 40.0% | |
| !!! | TCGCGATGGAATCACTTTTT+TGG | + | tig0022300:2615-2634 | Msa1398830:CDS | 40.0% |
| AGTTGAAATGCCACCTTTGA+TGG | + | tig0022300:2648-2667 | Msa1398830:CDS | 40.0% | |
| ATTACCTCAATGGCCATCAA+AGG | - | tig0022300:2664-2683 | None:intergenic | 40.0% | |
| TTACATCAGCTACCCTACAA+AGG | - | tig0022300:2762-2781 | None:intergenic | 40.0% | |
| GTGTCAGCAATGATACACAT+TGG | + | tig0022300:2913-2932 | Msa1398830:intron | 40.0% | |
| ! | CTTGTAGTCATTGTGCCATT+TGG | + | tig0022300:3222-3241 | Msa1398830:intron | 40.0% |
| GAAACAAAGTCAAGCCCAAA+TGG | - | tig0022300:3240-3259 | None:intergenic | 40.0% | |
| !! | GGGCTTGACTTTGTTTCTTT+TGG | + | tig0022300:3243-3262 | Msa1398830:intron | 40.0% |
| CTTTGAGCAAAGTTATGAGG+AGG | - | tig0022300:3300-3319 | None:intergenic | 40.0% | |
| GGACTTTGAGCAAAGTTATG+AGG | - | tig0022300:3303-3322 | None:intergenic | 40.0% | |
| GCATCGAAACTTCAGATTGA+AGG | - | tig0022300:3367-3386 | None:intergenic | 40.0% | |
| ATAGCAGGACTAACATAGGT+AGG | - | tig0022300:3994-4013 | None:intergenic | 40.0% | |
| ATGCATAGCAGGACTAACAT+AGG | - | tig0022300:3998-4017 | None:intergenic | 40.0% | |
| ATCTCCTTATATCCGAGCTT+GGG | - | tig0022300:4028-4047 | None:intergenic | 40.0% | |
| TATCTCCTTATATCCGAGCT+TGG | - | tig0022300:4029-4048 | None:intergenic | 40.0% | |
| ! | AAGCTTTATCCCACTGAGTA+GGG | - | tig0022300:4128-4147 | None:intergenic | 40.0% |
| ! | AAAGCTTTATCCCACTGAGT+AGG | - | tig0022300:4129-4148 | None:intergenic | 40.0% |
| TTGGTTACTGTATAACCTGC+TGG | + | tig0022300:4186-4205 | Msa1398830:intron | 40.0% | |
| TGAATGATTTCAGCTGGCTA+CGG | - | tig0022300:4329-4348 | None:intergenic | 40.0% | |
| ATAAATGGCAAGGTACACAG+CGG | + | tig0022300:4370-4389 | Msa1398830:intron | 40.0% | |
| AGATGTACCAACCAAAGAGT+AGG | + | tig0022300:4393-4412 | Msa1398830:intron | 40.0% | |
| GATGTACCAACCAAAGAGTA+GGG | + | tig0022300:4394-4413 | Msa1398830:intron | 40.0% | |
| ATGTACCAACCAAAGAGTAG+GGG | + | tig0022300:4395-4414 | Msa1398830:intron | 40.0% | |
| TTAGTTATCCCCCTACTCTT+TGG | - | tig0022300:4407-4426 | None:intergenic | 40.0% | |
| CTGTTCAGTAAGTCAGCAAA+AGG | - | tig0022300:4556-4575 | None:intergenic | 40.0% | |
| !!! | CTTTTGCTGACTTACTGAAC+AGG | + | tig0022300:4554-4573 | Msa1398830:intron | 40.0% |
| CTGGTGAAGTGTGAGATTAA+TGG | + | tig0022300:4766-4785 | Msa1398830:CDS | 40.0% | |
| GAAGTGTGAGATTAATGGTG+AGG | + | tig0022300:4771-4790 | Msa1398830:CDS | 40.0% | |
| CAAGTAAATTCCCACATCAC+TGG | + | tig0022300:4796-4815 | Msa1398830:CDS | 40.0% | |
| CTCACATCATCAAGGATTGA+AGG | - | tig0022300:4853-4872 | None:intergenic | 40.0% | |
| !! | CTTCAATCCTTGATGATGTG+AGG | + | tig0022300:4851-4870 | Msa1398830:CDS | 40.0% |
| TCCACCCTTGTGTTAGATTT+CGG | + | tig0022300:4875-4894 | Msa1398830:CDS | 40.0% | |
| AAGGCCGAAATCTAACACAA+GGG | - | tig0022300:4882-4901 | None:intergenic | 40.0% | |
| TTGTGTTAGATTTCGGCCTT+GGG | + | tig0022300:4882-4901 | Msa1398830:CDS | 40.0% | |
| AGCTTAAATTGTCCATCAGG+AGG | - | tig0022300:4934-4953 | None:intergenic | 40.0% | |
| ATTAGGACATCAGACATAGC+TGG | - | tig0022300:4978-4997 | None:intergenic | 40.0% | |
| GACATGCCGTCTTAATGTAA+TGG | + | tig0022300:5177-5196 | Msa1398830:CDS | 40.0% | |
| TGCCGTCTTAATGTAATGGT+TGG | + | tig0022300:5181-5200 | Msa1398830:CDS | 40.0% | |
| AGATCAGCTGATAAGATGCA+AGG | - | tig0022300:5265-5284 | None:intergenic | 40.0% | |
| TGATCTATCAGACATGCACT+TGG | + | tig0022300:5454-5473 | Msa1398830:intron | 40.0% | |
| TAATGTTCCAGACATTGAGG+GGG | - | tig0022300:5508-5527 | None:intergenic | 40.0% | |
| CTAATGTTCCAGACATTGAG+GGG | - | tig0022300:5509-5528 | None:intergenic | 40.0% | |
| CACTAATGTTCCAGACATTG+AGG | - | tig0022300:5511-5530 | None:intergenic | 40.0% | |
| ATTAGTGCTTGAGACTGGAA+TGG | + | tig0022300:5524-5543 | Msa1398830:CDS | 40.0% | |
| TGTCTTTCCCACATTTCAAG+TGG | + | tig0022300:5557-5576 | Msa1398830:CDS | 40.0% | |
| TGGTCTGCAAATAGACAAAC+TGG | + | tig0022300:5608-5627 | Msa1398830:CDS | 40.0% | |
| TGACTTCAAATTCACCTGCT+CGG | - | tig0022300:5683-5702 | None:intergenic | 40.0% | |
| ! | GAGATTTGGTTGCATGTACA+TGG | + | tig0022300:5759-5778 | Msa1398830:three_prime_UTR | 40.0% |
| ! | AGCGAAGGAAGTGATGGAAA+TGG | + | tig0022300:2293-2312 | Msa1398830:five_prime_UTR | 45.0% |
| TAACTGAACTGACCCGGAAT+CGG | - | tig0022300:2391-2410 | None:intergenic | 45.0% | |
| AAGGGTTAACTGAACTGACC+CGG | - | tig0022300:2397-2416 | None:intergenic | 45.0% | |
| ! | GGTTGTTGCTTGAAGGAATG+AGG | - | tig0022300:2556-2575 | None:intergenic | 45.0% |
| !! | TGGGTTGGTGAAGCAATAAG+GGG | - | tig0022300:2577-2596 | None:intergenic | 45.0% |
| ATGATACACATTGGACCCTG+CGG | + | tig0022300:2922-2941 | Msa1398830:intron | 45.0% | |
| TGTCACACACTGATACGTGT+CGG | + | tig0022300:2956-2975 | Msa1398830:intron | 45.0% | |
| ATGAGGAGGAGATGACAGAT+AGG | - | tig0022300:3286-3305 | None:intergenic | 45.0% | |
| CTTCAGATTGAAGGTGAGAC+TGG | - | tig0022300:3358-3377 | None:intergenic | 45.0% | |
| CAAACGTTACAAGGGCAAAG+AGG | - | tig0022300:3413-3432 | None:intergenic | 45.0% | |
| ! | AAAGTCTTGAGCGTTGTGAC+TGG | + | tig0022300:3626-3645 | Msa1398830:CDS | 45.0% |
| ! | TCGACTTCGGTTCCTTTTCA+AGG | + | tig0022300:3952-3971 | Msa1398830:intron | 45.0% |
| !! | ACTTCGGTTCCTTTTCAAGG+AGG | + | tig0022300:3955-3974 | Msa1398830:intron | 45.0% |
| TTAGTCCTGCTATGCATAGC+AGG | + | tig0022300:4001-4020 | Msa1398830:intron | 45.0% | |
| TTTATCCCACTGAGTAGGGT+CGG | - | tig0022300:4124-4143 | None:intergenic | 45.0% | |
| ! | AGAGGTGCAAAAATACCAGC+AGG | - | tig0022300:4204-4223 | None:intergenic | 45.0% |
| TTTGCACCTCTAATCTGGGT+TGG | + | tig0022300:4213-4232 | Msa1398830:intron | 45.0% | |
| TTAGTGCCAACCCAGATTAG+AGG | - | tig0022300:4222-4241 | None:intergenic | 45.0% | |
| TGTACCAACCAAAGAGTAGG+GGG | + | tig0022300:4396-4415 | Msa1398830:intron | 45.0% | |
| TTATCCCCCTACTCTTTGGT+TGG | - | tig0022300:4403-4422 | None:intergenic | 45.0% | |
| TTCATTCAGGGATGGTACTC+TGG | + | tig0022300:4747-4766 | Msa1398830:intron | 45.0% | |
| ATCAGGTAGACCAGTGATGT+GGG | - | tig0022300:4809-4828 | None:intergenic | 45.0% | |
| AATCAGGTAGACCAGTGATG+TGG | - | tig0022300:4810-4829 | None:intergenic | 45.0% | |
| CAAGGCCGAAATCTAACACA+AGG | - | tig0022300:4883-4902 | None:intergenic | 45.0% | |
| CTTGTGTTAGATTTCGGCCT+TGG | + | tig0022300:4881-4900 | Msa1398830:CDS | 45.0% | |
| CTTTCATTTGTGCCTCCTGA+TGG | + | tig0022300:4919-4938 | Msa1398830:CDS | 45.0% | |
| ! | AAGCCACAGTTGACTTCAGA+TGG | + | tig0022300:5151-5170 | Msa1398830:CDS | 45.0% |
| ! | CACAGTTGACTTCAGATGGT+GGG | + | tig0022300:5155-5174 | Msa1398830:CDS | 45.0% |
| GTTGGCATGAGAAATGATCC+TGG | + | tig0022300:5199-5218 | Msa1398830:CDS | 45.0% | |
| ACGGAATCAACTGTCTTTCC+AGG | - | tig0022300:5220-5239 | None:intergenic | 45.0% | |
| TCAGCTGATAAGATGCAAGG+AGG | - | tig0022300:5262-5281 | None:intergenic | 45.0% | |
| GCTGATCTGACTTCAACTCA+TGG | + | tig0022300:5277-5296 | Msa1398830:CDS | 45.0% | |
| ! | TTGAGGGGGCTTTATCCTTT+GGG | - | tig0022300:5494-5513 | None:intergenic | 45.0% |
| ! | ATTGAGGGGGCTTTATCCTT+TGG | - | tig0022300:5495-5514 | None:intergenic | 45.0% |
| GGAACATTAGTGCTTGAGAC+TGG | + | tig0022300:5519-5538 | Msa1398830:CDS | 45.0% | |
| GTACCCTACCGTTTCTACAA+AGG | + | tig0022300:5642-5661 | Msa1398830:CDS | 45.0% | |
| GACTTCAAATTCACCTGCTC+GGG | - | tig0022300:5682-5701 | None:intergenic | 45.0% | |
| ! | GAGCAGGTGAATTTGAAGTC+AGG | + | tig0022300:5682-5701 | Msa1398830:CDS | 45.0% |
| TTTGGTTGCATGTACATGGC+TGG | + | tig0022300:5763-5782 | Msa1398830:three_prime_UTR | 45.0% | |
| !!! | ATTCATTTATTTTTAAATTA+TGG | + | tig0022300:3841-3860 | Msa1398830:intron | 5.0% |
| !!! | TTTTAAGAAAATAAAAATTT+GGG | - | tig0022300:5070-5089 | None:intergenic | 5.0% |
| !!! | ATTTTAAGAAAATAAAAATT+TGG | - | tig0022300:5071-5090 | None:intergenic | 5.0% |
| GTGTGAAGCGAAGGAAGTGA+TGG | + | tig0022300:2287-2306 | Msa1398830:five_prime_UTR | 50.0% | |
| ACCTCAATGGCCATCAAAGG+TGG | - | tig0022300:2661-2680 | None:intergenic | 50.0% | |
| GACACCTACACAATACCGCA+GGG | - | tig0022300:2940-2959 | None:intergenic | 50.0% | |
| TGACACCTACACAATACCGC+AGG | - | tig0022300:2941-2960 | None:intergenic | 50.0% | |
| ! | ACTGATACGTGTCGGTGCAA+TGG | + | tig0022300:2964-2983 | Msa1398830:intron | 50.0% |
| GCACTTGTTCGCAACAGCAT+AGG | + | tig0022300:3119-3138 | Msa1398830:intron | 50.0% | |
| CTTGTTCGCAACAGCATAGG+AGG | + | tig0022300:3122-3141 | Msa1398830:intron | 50.0% | |
| ! | AATGTTGCCTGAGTGCTGTC+AGG | + | tig0022300:3440-3459 | Msa1398830:intron | 50.0% |
| AGAAAAGCCTGACAGCACTC+AGG | - | tig0022300:3450-3469 | None:intergenic | 50.0% | |
| AGGTCCCAAGCTCGGATATA+AGG | + | tig0022300:4021-4040 | Msa1398830:intron | 50.0% | |
| TAATAGCCGACCCTACTCAG+TGG | + | tig0022300:4115-4134 | Msa1398830:intron | 50.0% | |
| AATAGCCGACCCTACTCAGT+GGG | + | tig0022300:4116-4135 | Msa1398830:intron | 50.0% | |
| GGTGGAACCTCACATCATCA+AGG | - | tig0022300:4861-4880 | None:intergenic | 50.0% | |
| GCCGAAATCTAACACAAGGG+TGG | - | tig0022300:4879-4898 | None:intergenic | 50.0% | |
| ! | CCACCATCTGAAGTCAACTG+TGG | - | tig0022300:5157-5176 | None:intergenic | 50.0% |
| ! | CCACAGTTGACTTCAGATGG+TGG | + | tig0022300:5154-5173 | Msa1398830:CDS | 50.0% |
| CAGACATGCACTTGGTCCAT+TGG | + | tig0022300:5462-5481 | Msa1398830:intron | 50.0% | |
| !! | GGGCTTTATCCTTTGGGATC+CGG | - | tig0022300:5488-5507 | None:intergenic | 50.0% |
| GATAAAGCCCCCTCAATGTC+TGG | + | tig0022300:5498-5517 | Msa1398830:CDS | 50.0% | |
| TGGGCAATGGTGTGAAGCGA+AGG | + | tig0022300:2278-2297 | Msa1398830:five_prime_UTR | 55.0% | |
| ! | GCCACCTTTGATGGCCATTG+AGG | + | tig0022300:2657-2676 | Msa1398830:CDS | 55.0% |
| TGGACCCTGCGGTATTGTGT+AGG | + | tig0022300:2933-2952 | Msa1398830:intron | 55.0% | |
| GCGGAGCTATCATCTCTTGC+AGG | - | tig0022300:3592-3611 | None:intergenic | 55.0% | |
| AATGTGAGCGACACGCTTCC+AGG | + | tig0022300:3659-3678 | Msa1398830:CDS | 55.0% | |
| ACACAAGATGCTGTGCTGCC+TGG | - | tig0022300:3680-3699 | None:intergenic | 55.0% | |
| GCACAGCATCTTGTGTTCCC+TGG | + | tig0022300:3684-3703 | Msa1398830:CDS | 55.0% | |
| TTAGGGTCGGCTGTTCTCCA+GGG | - | tig0022300:3704-3723 | None:intergenic | 55.0% | |
| TGGGACCTGCTATGCATAGC+AGG | - | tig0022300:4009-4028 | None:intergenic | 55.0% | |
| TGCATAGCAGGTCCCAAGCT+CGG | + | tig0022300:4013-4032 | Msa1398830:intron | 55.0% | |
| CATGCACTTGGTCCATTGGC+CGG | + | tig0022300:5466-5485 | Msa1398830:CDS | 55.0% | |
| !! | ATCCTTTGGGATCCGGCCAA+TGG | - | tig0022300:5481-5500 | None:intergenic | 55.0% |
| !! | ATCATGGGTGTCGCTCTCTC+TGG | + | tig0022300:5588-5607 | Msa1398830:CDS | 55.0% |
| TTTCGAGCTCTTACCCGAGC+AGG | + | tig0022300:5666-5685 | Msa1398830:CDS | 55.0% | |
| ! | CGTGTCGGTGCAATGGTCGT+TGG | + | tig0022300:2971-2990 | Msa1398830:intron | 60.0% |
| CTTAGGGTCGGCTGTTCTCC+AGG | - | tig0022300:3705-3724 | None:intergenic | 60.0% | |
| GTCCATTGGCCGGATCCCAA+AGG | + | tig0022300:5476-5495 | Msa1398830:CDS | 60.0% | |
| CTGGGTGCGTGGGTGGGCAA+TGG | + | tig0022300:2265-2284 | Msa1398830:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022300 | gene | 2262 | 5938 | 2262 | ID=Msa1398830;Name=Msa1398830 |
| tig0022300 | mRNA | 2262 | 5938 | 2262 | ID=Msa1398830-mRNA-1;Parent=Msa1398830;Name=Msa1398830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=101|1|1|1|1|1|7|228|411 |
| tig0022300 | exon | 2262 | 2397 | 2262 | ID=Msa1398830-mRNA-1:exon:16850;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 2480 | 2678 | 2480 | ID=Msa1398830-mRNA-1:exon:16851;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 2757 | 2846 | 2757 | ID=Msa1398830-mRNA-1:exon:16852;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 3536 | 3783 | 3536 | ID=Msa1398830-mRNA-1:exon:16853;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 4756 | 4965 | 4756 | ID=Msa1398830-mRNA-1:exon:16854;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 5117 | 5324 | 5117 | ID=Msa1398830-mRNA-1:exon:16855;Parent=Msa1398830-mRNA-1 |
| tig0022300 | exon | 5465 | 5938 | 5465 | ID=Msa1398830-mRNA-1:exon:16856;Parent=Msa1398830-mRNA-1 |
| tig0022300 | five_prime_UTR | 2262 | 2362 | 2262 | ID=Msa1398830-mRNA-1:five_prime_utr;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 2363 | 2397 | 2363 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 2480 | 2678 | 2480 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 2757 | 2846 | 2757 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 3536 | 3783 | 3536 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 4756 | 4965 | 4756 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 5117 | 5324 | 5117 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | CDS | 5465 | 5710 | 5465 | ID=Msa1398830-mRNA-1:cds;Parent=Msa1398830-mRNA-1 |
| tig0022300 | three_prime_UTR | 5711 | 5938 | 5711 | ID=Msa1398830-mRNA-1:three_prime_utr;Parent=Msa1398830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
