AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401030 MtrunA17_Chr7g0274471 92.026 464 12 2 1 462 1 441 0.0 860
Msa1401030 MtrunA17_Chr1g0190301 51.748 429 130 10 47 460 19 385 6.26e-126 371
Msa1401030 MtrunA17_Chr7g0261911 41.591 440 200 10 1 411 26 437 4.73e-89 280
Msa1401030 MtrunA17_Chr1g0175091 46.305 203 72 6 200 398 244 413 7.48e-45 162
Msa1401030 MtrunA17_Chr7g0258551 45.783 166 66 2 215 380 211 352 1.41e-42 155
Msa1401030 MtrunA17_Chr2g0291021 47.674 172 65 2 216 385 49 197 4.15e-42 152
Msa1401030 MtrunA17_Chr7g0254981 39.801 201 88 3 182 372 9 186 1.08e-40 147
Msa1401030 MtrunA17_Chr6g0461641 45.714 175 56 4 212 370 38 189 4.84e-36 137
Msa1401030 MtrunA17_Chr5g0417521 33.488 215 96 5 212 404 11 200 3.64e-30 120
Msa1401030 MtrunA17_Chr8g0356501 34.574 188 89 4 202 381 23 184 1.24e-29 118
Msa1401030 MtrunA17_Chr2g0321461 37.912 182 69 4 212 372 41 199 3.09e-29 118
Msa1401030 MtrunA17_Chr5g0409731 42.683 164 59 4 216 367 25 165 4.11e-29 115
Msa1401030 MtrunA17_Chr4g0042451 34.562 217 92 6 212 404 13 203 2.15e-28 115
Msa1401030 MtrunA17_Chr2g0310011 35.714 168 76 3 201 362 20 161 8.04e-27 110
Msa1401030 MtrunA17_Chr1g0175071 36.612 183 88 6 190 371 153 308 1.55e-25 106
Msa1401030 MtrunA17_Chr2g0290991 45.000 120 54 2 216 323 39 158 2.65e-24 102
Msa1401030 MtrunA17_Chr1g0197171 32.934 167 80 2 216 373 44 187 5.74e-24 101
Msa1401030 MtrunA17_Chr1g0175081 55.405 74 31 1 203 276 11 82 4.38e-23 93.6
Msa1401030 MtrunA17_Chr7g0242521 37.662 154 59 4 216 361 13 137 1.13e-22 96.7
Msa1401030 MtrunA17_Chr1g0162931 67.857 56 18 0 217 272 19 74 2.18e-19 88.2
Msa1401030 MtrunA17_Chr7g0258531 35.519 183 78 6 188 364 191 339 2.61e-19 89.4
Msa1401030 MtrunA17_Chr2g0288601 63.793 58 21 0 217 274 72 129 3.14e-19 83.6
Msa1401030 MtrunA17_Chr1g0210911 66.071 56 19 0 217 272 23 78 6.15e-19 87.8
Msa1401030 MtrunA17_Chr3g0095611 38.760 129 73 3 216 340 19 145 1.85e-18 84.0
Msa1401030 MtrunA17_Chr2g0320231 60.294 68 26 1 217 284 98 164 2.30e-18 86.7
Msa1401030 MtrunA17_Chr8g0379121 53.247 77 32 1 217 289 112 188 3.62e-18 86.7
Msa1401030 MtrunA17_Chr7g0243081 62.500 56 21 0 217 272 72 127 3.96e-18 85.5
Msa1401030 MtrunA17_Chr6g0479431 56.164 73 30 1 217 287 203 275 1.94e-17 83.6
Msa1401030 MtrunA17_Chr1g0154261 62.295 61 23 0 217 277 127 187 2.16e-17 82.4
Msa1401030 MtrunA17_Chr8g0366281 51.948 77 37 0 210 286 167 243 4.00e-17 82.8
Msa1401030 MtrunA17_Chr5g0410741 61.667 60 23 0 213 272 216 275 1.98e-16 80.9
Msa1401030 MtrunA17_Chr3g0109981 61.667 60 23 0 213 272 271 330 3.61e-16 80.5
Msa1401030 MtrunA17_Chr2g0283951 68.000 50 16 0 217 266 90 139 1.46e-15 78.2
Msa1401030 MtrunA17_Chr2g0304841 54.930 71 30 2 212 282 209 277 2.31e-15 78.6
Msa1401030 MtrunA17_Chr7g0275401 66.667 54 17 1 216 269 192 244 3.47e-15 75.9
Msa1401030 MtrunA17_Chr4g0067981 46.739 92 40 2 216 299 215 305 2.92e-14 75.1
Msa1401030 MtrunA17_Chr3g0137101 60.345 58 22 1 212 269 194 250 1.73e-13 72.8
Msa1401030 MtrunA17_Chr4g0009901 53.030 66 28 2 216 281 168 230 1.75e-13 70.5
Msa1401030 MtrunA17_Chr1g0198601 54.839 62 28 0 216 277 211 272 2.12e-13 71.6
Msa1401030 MtrunA17_Chr4g0045361 62.963 54 20 0 216 269 274 327 2.42e-13 71.6
Msa1401030 MtrunA17_Chr4g0009981 50.649 77 34 3 205 281 106 178 4.35e-13 69.3
Msa1401030 MtrunA17_Chr4g0062921 53.030 66 31 0 210 275 229 294 5.23e-13 70.9
Msa1401030 MtrunA17_Chr1g0149841 62.069 58 21 1 212 269 187 243 6.24e-13 70.9
Msa1401030 MtrunA17_Chr4g0031961 51.562 64 30 1 206 269 121 183 1.04e-12 68.9
Msa1401030 MtrunA17_Chr1g0161431 62.963 54 19 1 216 269 200 252 1.14e-12 70.1
Msa1401030 MtrunA17_Chr4g0074401 51.562 64 30 1 212 275 199 261 1.28e-12 70.1
Msa1401030 MtrunA17_Chr1g0149831 57.627 59 21 1 211 269 123 177 1.59e-12 67.0
Msa1401030 MtrunA17_Chr5g0422621 58.929 56 23 0 214 269 196 251 1.71e-12 68.6
Msa1401030 MtrunA17_Chr4g0074411 53.125 64 29 1 212 275 197 259 2.00e-12 69.3
Msa1401030 MtrunA17_Chr4g0074421 55.357 56 24 1 211 266 128 182 4.10e-12 65.1
Msa1401030 MtrunA17_Chr5g0402631 57.895 57 24 0 213 269 211 267 4.58e-12 67.4
Msa1401030 MtrunA17_Chr2g0294911 55.172 58 25 1 212 269 207 263 1.03e-11 67.0
Msa1401030 MtrunA17_Chr4g0054981 37.895 95 58 1 175 269 269 362 2.14e-11 65.9
Msa1401030 MtrunA17_Chr7g0255711 53.704 54 24 1 216 269 91 143 4.28e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401030 AT5G29000.2 43.176 403 169 10 3 383 14 378 3.70e-82 260
Msa1401030 AT5G29000.1 44.199 362 140 8 52 383 6 335 9.28e-79 249
Msa1401030 AT5G29000.3 44.199 362 140 8 52 383 6 335 9.28e-79 249
Msa1401030 AT3G04450.4 45.706 326 121 9 93 400 71 358 5.98e-74 238
Msa1401030 AT3G04450.2 45.706 326 121 9 93 400 71 358 5.98e-74 238
Msa1401030 AT3G04450.1 45.706 326 121 9 93 400 111 398 1.83e-73 238
Msa1401030 AT4G28610.1 48.364 275 106 11 106 368 105 355 4.24e-66 218
Msa1401030 AT5G29000.4 39.203 301 149 8 3 284 14 299 7.72e-47 164
Msa1401030 AT2G20400.1 37.151 358 155 11 44 368 40 360 1.49e-46 166
Msa1401030 AT2G20400.2 37.326 359 154 12 44 368 40 361 2.13e-45 163
Msa1401030 AT3G04450.3 45.320 203 89 5 93 282 111 304 3.95e-44 157
Msa1401030 AT2G01060.1 43.564 202 85 3 215 415 14 187 1.75e-43 155
Msa1401030 AT3G13040.3 45.205 219 80 4 208 409 233 428 1.91e-41 153
Msa1401030 AT3G13040.1 45.205 219 80 4 208 409 233 428 1.91e-41 153
Msa1401030 AT3G13040.2 45.205 219 80 4 208 409 233 428 1.91e-41 153
Msa1401030 AT5G06800.1 43.455 191 79 3 185 370 156 322 8.35e-41 150
Msa1401030 AT5G06800.2 42.564 195 80 3 185 370 156 327 6.28e-40 148
Msa1401030 AT3G24120.2 40.206 194 84 5 204 385 29 202 8.55e-36 134
Msa1401030 AT4G13640.2 44.848 165 57 4 216 367 37 180 4.91e-35 132
Msa1401030 AT3G24120.1 39.691 194 82 4 204 385 29 199 6.20e-35 132
Msa1401030 AT4G13640.1 44.848 165 54 4 216 367 37 177 1.93e-34 130
Msa1401030 AT1G69580.1 38.798 183 72 2 205 370 23 182 8.21e-32 124
Msa1401030 AT3G04030.3 35.678 199 90 3 204 387 33 208 1.66e-31 125
Msa1401030 AT1G69580.2 38.919 185 70 4 205 370 23 183 2.38e-30 120
Msa1401030 AT5G18240.1 40.331 181 61 5 212 372 41 194 4.81e-30 121
Msa1401030 AT5G18240.4 40.331 181 61 5 212 372 41 194 4.81e-30 121
Msa1401030 AT1G79430.2 38.636 176 76 4 201 370 19 168 1.46e-29 119
Msa1401030 AT5G45580.2 31.395 258 122 4 216 455 23 243 2.41e-29 116
Msa1401030 AT5G45580.1 31.395 258 122 4 216 455 7 227 2.51e-29 116
Msa1401030 AT3G04030.2 34.673 199 91 4 204 387 33 207 1.19e-28 117
Msa1401030 AT5G18240.5 39.227 181 61 5 212 372 41 192 1.40e-28 117
Msa1401030 AT3G04030.1 33.166 199 89 3 204 387 33 202 2.08e-27 113
Msa1401030 AT5G18240.2 37.569 181 60 5 212 372 41 188 5.38e-26 109
Msa1401030 AT5G18240.3 37.569 181 60 5 212 372 41 188 5.38e-26 109
Msa1401030 AT2G01060.2 39.157 166 72 3 251 415 1 138 2.47e-25 104
Msa1401030 AT3G12730.1 35.000 160 73 2 216 367 23 159 3.89e-24 100
Msa1401030 AT5G06800.3 49.020 102 47 1 185 281 156 257 1.19e-23 100
Msa1401030 AT4G04605.1 56.522 69 30 0 217 285 15 83 3.83e-19 86.3
Msa1401030 AT1G14600.1 67.857 56 18 0 217 272 24 79 6.77e-19 86.7
Msa1401030 AT2G42660.1 59.016 61 25 0 217 277 51 111 9.11e-19 86.3
Msa1401030 AT2G40260.1 54.321 81 34 2 200 280 67 144 9.43e-18 85.5
Msa1401030 AT5G42630.2 66.071 56 19 0 217 272 106 161 1.07e-17 82.4
Msa1401030 AT5G42630.1 66.071 56 19 0 217 272 106 161 2.20e-17 82.4
Msa1401030 AT2G02060.2 63.636 55 20 0 217 271 30 84 2.84e-17 82.0
Msa1401030 AT2G02060.1 63.636 55 20 0 217 271 30 84 2.84e-17 82.0
Msa1401030 AT2G38300.1 60.714 56 22 0 217 272 55 110 5.54e-17 82.4
Msa1401030 AT4G17695.1 64.286 56 20 0 217 272 165 220 1.64e-16 80.9
Msa1401030 AT1G32240.2 61.667 60 23 0 213 272 210 269 1.82e-16 81.3
Msa1401030 AT1G32240.1 61.667 60 23 0 213 272 210 269 2.42e-16 80.9
Msa1401030 AT5G16560.1 61.667 60 23 0 213 272 216 275 2.55e-16 81.3
Msa1401030 AT2G06020.1 55.738 61 27 0 212 272 82 142 5.40e-16 79.0
Msa1401030 AT4G04580.1 38.776 98 58 1 217 312 15 112 1.23e-15 75.1
Msa1401030 AT1G25550.1 56.061 66 29 0 213 278 206 271 7.81e-15 75.9
Msa1401030 AT2G03500.1 50.000 76 38 0 207 282 224 299 3.68e-14 74.7
Msa1401030 AT3G16857.3 68.519 54 16 1 216 269 167 219 1.33e-13 73.6
Msa1401030 AT3G16857.1 68.519 54 16 1 216 269 237 289 1.40e-13 73.6
Msa1401030 AT3G16857.2 68.519 54 16 1 216 269 237 289 1.48e-13 73.6
Msa1401030 AT4G37180.1 47.500 80 41 1 203 281 197 276 1.74e-13 72.0
Msa1401030 AT4G37180.2 47.500 80 41 1 203 281 204 283 1.88e-13 72.0
Msa1401030 AT3G62670.1 51.389 72 31 1 216 283 211 282 3.49e-13 71.6
Msa1401030 AT5G58080.1 56.667 60 25 1 210 269 188 246 4.83e-13 71.6
Msa1401030 AT1G68670.1 56.667 60 26 0 216 275 215 274 1.04e-12 69.7
Msa1401030 AT1G79430.1 34.884 129 52 4 248 370 1 103 1.35e-12 68.6
Msa1401030 AT5G59570.2 52.459 61 28 1 209 269 134 193 1.37e-12 68.6
Msa1401030 AT5G59570.1 52.459 61 28 1 209 269 134 193 1.37e-12 68.6
Msa1401030 AT5G44190.1 54.237 59 26 1 214 272 145 202 1.92e-12 68.9
Msa1401030 AT5G44190.2 54.237 59 26 1 214 272 145 202 2.16e-12 68.6
Msa1401030 AT2G25180.1 59.322 59 23 1 211 269 190 247 2.17e-12 69.7
Msa1401030 AT3G04030.5 30.968 155 69 3 248 387 1 132 2.36e-12 68.2
Msa1401030 AT2G40970.1 42.667 75 42 1 195 269 84 157 5.24e-12 66.2
Msa1401030 AT4G31920.1 53.226 62 28 1 213 274 180 240 7.33e-12 67.8
Msa1401030 AT1G49560.1 55.385 65 29 0 216 280 192 256 7.77e-12 67.0
Msa1401030 AT2G20570.1 38.947 95 52 2 213 302 150 243 7.86e-12 67.4
Msa1401030 AT4G04555.1 49.180 61 30 1 217 277 15 74 8.02e-12 62.4
Msa1401030 AT3G46640.3 55.556 54 23 1 216 269 144 196 9.31e-12 66.6
Msa1401030 AT3G46640.2 55.556 54 23 1 216 269 144 196 1.09e-11 66.2
Msa1401030 AT3G46640.1 55.556 54 23 1 216 269 144 196 1.09e-11 66.2
Msa1401030 AT1G25550.2 59.259 54 22 0 213 266 206 259 1.31e-11 65.5
Msa1401030 AT2G20570.2 40.000 90 48 2 218 302 171 259 1.42e-11 66.6
Msa1401030 AT1G67710.3 53.968 63 29 0 218 280 121 183 1.54e-11 66.6
Msa1401030 AT5G05090.1 53.704 54 24 1 216 269 81 133 1.61e-11 65.1
Msa1401030 AT1G67710.2 53.968 63 29 0 218 280 130 192 1.86e-11 66.2
Msa1401030 AT1G67710.1 53.968 63 29 0 218 280 195 257 1.94e-11 66.6
Msa1401030 AT3G25790.1 34.586 133 74 3 152 275 127 255 2.17e-11 65.9
Msa1401030 AT3G10760.1 53.704 54 24 1 216 269 105 157 2.83e-11 65.1
Msa1401030 AT2G01760.3 43.902 82 43 2 216 295 135 215 4.12e-11 64.3
Msa1401030 AT2G01760.1 43.902 82 43 2 216 295 200 280 4.67e-11 64.7
Msa1401030 AT2G01760.2 43.902 82 43 2 216 295 228 308 5.54e-11 64.7
Msa1401030 AT4G37180.3 48.438 64 33 0 203 266 197 260 6.43e-11 63.5
Msa1401030 AT1G49190.1 46.377 69 34 1 216 281 215 283 6.91e-11 64.3

Find 123 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTTCTTCCCAGTCTTA+TGG 0.207188 tig0022499:-27818 Msa1401030:CDS
CTTTCTCCAGGTATGTCTTT+AGG 0.231387 tig0022499:+25142 None:intergenic
CACCCGGAACTTCGAAGTTT+TGG 0.243976 tig0022499:-25406 Msa1401030:CDS
CCAAGAAGCTGACTCCAATT+TGG 0.256047 tig0022499:+27340 None:intergenic
ATTAGATTCAAGACACCTTT+TGG 0.275565 tig0022499:+26670 None:intergenic
ATGATTCTGTTAATCCAAAT+TGG 0.276239 tig0022499:-27354 Msa1401030:CDS
TCTGGACTCCAACGCATTCT+AGG 0.278668 tig0022499:+26838 None:intergenic
TGGTGACTCAGGTTTGTATC+TGG 0.307622 tig0022499:+26472 None:intergenic
CCAAATTGGAGTCAGCTTCT+TGG 0.308074 tig0022499:-27340 Msa1401030:CDS
GATCCATTGCCAGATATTCT+TGG 0.312892 tig0022499:-27496 Msa1401030:CDS
TCTGCTTATTAGATTAGGTT+AGG 0.337320 tig0022499:+30497 None:intergenic
ATTAATCATCAAAAGAAATA+AGG 0.337637 tig0022499:-29016 Msa1401030:intron
AAGAGTCTGCTTATTAGATT+AGG 0.344025 tig0022499:+30492 None:intergenic
CCCTTCGCTTCTCAGGCATT+AGG 0.349271 tig0022499:-27598 Msa1401030:CDS
TCAGGAAAACCAAGAATATC+TGG 0.353256 tig0022499:+27487 None:intergenic
AAGAGAAGATACCTTGAAAT+CGG 0.355737 tig0022499:+30296 None:intergenic
AATTATAAAACAAAAGAAAC+AGG 0.369200 tig0022499:-28902 Msa1401030:five_prime_UTR
AGATTCTCCCTTCGCTTCTC+AGG 0.383362 tig0022499:-27605 Msa1401030:CDS
ACAAAAGCTTCGTGAAGTTC+TGG 0.384632 tig0022499:+26820 None:intergenic
GTGTGTATATTGTCTACTTT+GGG 0.388260 tig0022499:+30604 None:intergenic
TGCTGTGAAACGGGAGGAAA+AGG 0.393018 tig0022499:+27643 None:intergenic
ATTGAAATCAGGACAGATAA+AGG 0.395646 tig0022499:-27882 Msa1401030:intron
CTCCCGTTTCACAGCATGAT+AGG 0.396353 tig0022499:-27636 Msa1401030:CDS
TGCCAAAACTTCGAAGTTCC+GGG 0.402530 tig0022499:+25404 None:intergenic
GAATTATGGTTACAGGAGTA+AGG 0.405297 tig0022499:-25509 Msa1401030:intron
CGTGTGTATATTGTCTACTT+TGG 0.413349 tig0022499:+30603 None:intergenic
CAGAAGCAGCATACACCATC+TGG 0.414147 tig0022499:-26922 Msa1401030:CDS
TCCATAAGACTGGGAAGAAC+AGG 0.416578 tig0022499:+27817 None:intergenic
AATTGAGGAAATGAAATCTC+TGG 0.418669 tig0022499:-25619 Msa1401030:CDS
ATAATTGCTTTCCATAAGAC+TGG 0.420183 tig0022499:+27807 None:intergenic
TGCCTATCATGCTGTGAAAC+GGG 0.423721 tig0022499:+27634 None:intergenic
ATGCCAAAACTTCGAAGTTC+CGG 0.424278 tig0022499:+25403 None:intergenic
GGAGGAAAAGGGACGCCGCC+AGG 0.438286 tig0022499:+27655 None:intergenic
TTTGCTTTCTGCTTACATCA+TGG 0.449248 tig0022499:+25116 None:intergenic
AAAGATGAACGGGATAAATC+AGG 0.451170 tig0022499:-25181 Msa1401030:CDS
ATCTACCCTCTCATGTTCAT+TGG 0.454358 tig0022499:+25072 None:intergenic
TGTTGTTGAACCAACACAAC+AGG 0.455318 tig0022499:-27308 Msa1401030:intron
TTGCTTTCTGCTTACATCAT+GGG 0.456687 tig0022499:+25117 None:intergenic
AGAATATCTGGCAATGGATC+TGG 0.459308 tig0022499:+27499 None:intergenic
CTGCTTATTAGATTAGGTTA+GGG 0.460141 tig0022499:+30498 None:intergenic
TGCACCTTCTGCTGCAGTGT+TGG 0.460592 tig0022499:-25248 Msa1401030:CDS
ATGAAGAATTGTTGGAGAAG+AGG 0.461184 tig0022499:+30348 None:intergenic
GTTGATGCTGATGCTGAAGC+TGG 0.462318 tig0022499:+26877 None:intergenic
GGTGAACGATGAAAAGAATC+CGG 0.468237 tig0022499:+27775 None:intergenic
ACATCATGGGAACTTTCTCC+AGG 0.474455 tig0022499:+25130 None:intergenic
TGTATACCTTCTGGTGACTC+AGG 0.476063 tig0022499:+26461 None:intergenic
TTGCCTATCATGCTGTGAAA+CGG 0.481947 tig0022499:+27633 None:intergenic
TCATCTCAAGATGTTTCCCT+TGG 0.484323 tig0022499:+25323 None:intergenic
TCAACCAATGATGAATGTCC+TGG 0.485207 tig0022499:-27673 Msa1401030:CDS
CACGACGCCACCTTCTTCTC+CGG 0.487049 tig0022499:-25224 Msa1401030:CDS
ATTAGGTGACAATGTGTCTT+CGG 0.494529 tig0022499:-27581 Msa1401030:CDS
CATGCAGAGGCTACTCCAAA+AGG 0.496159 tig0022499:-26685 Msa1401030:intron
TGATGTAAGCAGAAAGCAAA+TGG 0.496266 tig0022499:-25113 Msa1401030:CDS
TTTGAGAAACAGAAACAGAT+AGG 0.496976 tig0022499:-25298 Msa1401030:CDS
CAGCAGAAGGTGCATTTGAA+GGG 0.498153 tig0022499:+25257 None:intergenic
AGGGAATCACTGAAGCATTA+CGG 0.500945 tig0022499:-25489 Msa1401030:CDS
GCCGCCAGGACATTCATCAT+TGG 0.501664 tig0022499:+27669 None:intergenic
GCAGCAGAAGGTGCATTTGA+AGG 0.504283 tig0022499:+25256 None:intergenic
AAATTGTCCACCGGAGAAGA+AGG 0.507969 tig0022499:+25214 None:intergenic
AGAGAAGATACCTTGAAATC+GGG 0.512720 tig0022499:+30297 None:intergenic
GTGAACGATGAAAAGAATCC+GGG 0.513629 tig0022499:+27776 None:intergenic
TCCATATATGAACCTGGAGG+TGG 0.532203 tig0022499:+26611 None:intergenic
GAAGGTGCATTTGAAGGGGA+AGG 0.532963 tig0022499:+25262 None:intergenic
AAACTAAGCCTAGAATGCGT+TGG 0.536261 tig0022499:-26846 Msa1401030:CDS
ACCTAATGCCTGAGAAGCGA+AGG 0.539904 tig0022499:+27597 None:intergenic
CAATGTTAGCAAAATGCTGC+AGG 0.540123 tig0022499:-28841 Msa1401030:intron
TACTCTCACTACCACCAAGC+TGG 0.543524 tig0022499:+26785 None:intergenic
ATTAGGTTAGGGCGATTAGC+CGG 0.543717 tig0022499:+30509 None:intergenic
AGAAAATGATGATATATCGT+GGG 0.544394 tig0022499:-27524 Msa1401030:CDS
GTGGAAGCAGTCAACCAGCT+TGG 0.551472 tig0022499:-26799 Msa1401030:CDS
GATGTAGCTTGCAATGAGGC+AGG 0.552385 tig0022499:+27730 None:intergenic
GAGAAACAAACCTGTTGTGT+TGG 0.559790 tig0022499:+27298 None:intergenic
AATTATGGTTACAGGAGTAA+GGG 0.560396 tig0022499:-25508 Msa1401030:intron
CAAAAGAAATAAGGAGCCAA+AGG 0.566874 tig0022499:-29007 Msa1401030:intron
AAGAAAATGATGATATATCG+TGG 0.571936 tig0022499:-27525 Msa1401030:CDS
TGAAGCATTACGGTTGCAGA+TGG 0.573866 tig0022499:-25479 Msa1401030:CDS
TTGAATCTAATGAATGTTGA+GGG 0.574014 tig0022499:-26658 Msa1401030:CDS
CAGATTCAAATTGAAAACCA+AGG 0.574230 tig0022499:-25340 Msa1401030:CDS
TTCTGTCCAGCATGATCAGG+TGG 0.575982 tig0022499:-27458 Msa1401030:CDS
TTTGCTGTCAGACCCCTGAC+AGG 0.580082 tig0022499:+27754 None:intergenic
ACATTATTGTTATTATCACC+CGG 0.582369 tig0022499:-25422 Msa1401030:CDS
AAACCAAGAATATCTGGCAA+TGG 0.585936 tig0022499:+27493 None:intergenic
TAATTGTTATACAGATTCAA+AGG 0.586802 tig0022499:-25369 Msa1401030:CDS
GACGCCACCTTCTTCTCCGG+TGG 0.587703 tig0022499:-25221 Msa1401030:CDS
TTTCATCGTTCACCTGTCAG+GGG 0.589580 tig0022499:-27766 Msa1401030:CDS
GAAGCAGTCAACCAGCTTGG+TGG 0.594269 tig0022499:-26796 Msa1401030:CDS
GCTGTGAAACGGGAGGAAAA+GGG 0.594959 tig0022499:+27644 None:intergenic
CTCCTACGCTACTTATCTTG+CGG 0.595355 tig0022499:+30571 None:intergenic
CGCCGCAAGATAAGTAGCGT+AGG 0.604254 tig0022499:-30573 Msa1401030:five_prime_UTR
AGATTCAAATTGAAAACCAA+GGG 0.608265 tig0022499:-25339 Msa1401030:CDS
GCAAGCTTATGAGACGCAGA+TGG 0.608347 tig0022499:+28971 None:intergenic
AGAACAGGTGAAGACGAAGA+AGG 0.608881 tig0022499:+27832 None:intergenic
AGGTGAAGACGAAGAAGGCA+TGG 0.611132 tig0022499:+27837 None:intergenic
TAATTGCTTTCCATAAGACT+GGG 0.614268 tig0022499:+27808 None:intergenic
GTGTCCAACACTGCAGCAGA+AGG 0.618637 tig0022499:+25244 None:intergenic
AAGTTACCAATGAACATGAG+AGG 0.619833 tig0022499:-25078 Msa1401030:CDS
GCGACTTCATGAACAACTTG+AGG 0.620878 tig0022499:-25446 Msa1401030:CDS
ATAAGCTTGCATGAAGCACA+TGG 0.621239 tig0022499:-28958 Msa1401030:five_prime_UTR
TCATCATTGGTTGAAAACAC+AGG 0.621388 tig0022499:+27682 None:intergenic
AAGCAATTATATGAAACCCC+CGG 0.622265 tig0022499:-27794 Msa1401030:CDS
CTTGAATCTAATGAATGTTG+AGG 0.622537 tig0022499:-26659 Msa1401030:CDS
AAGGTGCATTTGAAGGGGAA+GGG 0.624076 tig0022499:+25263 None:intergenic
GACATTCCTAAAGACATACC+TGG 0.630421 tig0022499:-25148 Msa1401030:CDS
AGTTACCAATGAACATGAGA+GGG 0.634728 tig0022499:-25077 Msa1401030:CDS
AGCAGAAGGTGCATTTGAAG+GGG 0.635905 tig0022499:+25258 None:intergenic
ACAGGTCGAACACTTCTGAT+CGG 0.639592 tig0022499:+27700 None:intergenic
AGATTGTTGACTTCTCCAGA+TGG 0.656610 tig0022499:+26907 None:intergenic
CGATGATGTAGCTTGCAATG+AGG 0.659256 tig0022499:+27726 None:intergenic
GAAAATGATGATATATCGTG+GGG 0.660394 tig0022499:-27523 Msa1401030:CDS
TACAAACCTGAGTCACCAGA+AGG 0.662240 tig0022499:-26467 Msa1401030:intron
CTATCATGCTGTGAAACGGG+AGG 0.666909 tig0022499:+27637 None:intergenic
TTGTCCACCGGAGAAGAAGG+TGG 0.671117 tig0022499:+25217 None:intergenic
ATTATAAAACAAAAGAAACA+GGG 0.671167 tig0022499:-28901 Msa1401030:five_prime_UTR
TGAACGATGAAAAGAATCCG+GGG 0.672098 tig0022499:+27777 None:intergenic
CCTAATGCCTGAGAAGCGAA+GGG 0.672541 tig0022499:+27598 None:intergenic
ACCAATGATGAATGTCCTGG+CGG 0.684026 tig0022499:-27670 Msa1401030:CDS
TTATAAAACAAAAGAAACAG+GGG 0.685392 tig0022499:-28900 Msa1401030:five_prime_UTR
GTTTATAGAAGACAAAACAA+AGG 0.697917 tig0022499:-28875 Msa1401030:five_prime_UTR
AAGTAGACAATATACACACG+TGG 0.698142 tig0022499:-30600 Msa1401030:five_prime_UTR
GAGAAGTGAATGTTGCTGAG+TGG 0.714972 tig0022499:+27554 None:intergenic
CTACGCTACTTATCTTGCGG+CGG 0.721667 tig0022499:+30574 None:intergenic
GAACGATGAAAAGAATCCGG+GGG 0.737762 tig0022499:+27778 None:intergenic
AGTAGACAATATACACACGT+GGG 0.741629 tig0022499:-30599 Msa1401030:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTCTTTTATGATTAAT+AGG - tig0022499:26840-26859 Msa1401030:CDS 10.0%
!!! ATATTTTCACAAAATATTAA+AGG + tig0022499:29916-29935 None:intergenic 10.0%
!! TGGATAAGATTATTAATTAT+TGG - tig0022499:25423-25442 Msa1401030:CDS 15.0%
!! GGATAAGATTATTAATTATT+GGG - tig0022499:25424-25443 Msa1401030:CDS 15.0%
!!! TAATCCCAATAAATTATTTT+AGG - tig0022499:25595-25614 Msa1401030:intron 15.0%
!! TGTACCTAAAATAATTTATT+GGG + tig0022499:25602-25621 None:intergenic 15.0%
!!! TTGGTTAGATTATTTTTTTA+GGG - tig0022499:25793-25812 Msa1401030:intron 15.0%
!! AAATTAAGAGCTTAAAAAAA+TGG + tig0022499:25956-25975 None:intergenic 15.0%
!!! TTTTGAAACAAATTTTTTGT+TGG + tig0022499:26096-26115 None:intergenic 15.0%
!!! AGTTTGTTAATAAAATACAT+GGG + tig0022499:26468-26487 None:intergenic 15.0%
!!! TAGTTTGTTAATAAAATACA+TGG + tig0022499:26469-26488 None:intergenic 15.0%
!!! TATTTCTTTTGATGATTAAT+GGG + tig0022499:26612-26631 None:intergenic 15.0%
!!! TTATTTCTTTTGATGATTAA+TGG + tig0022499:26613-26632 None:intergenic 15.0%
!! ATTAATCATCAAAAGAAATA+AGG - tig0022499:26612-26631 Msa1401030:intron 15.0%
!!! TTTCTTTTGAAGAAAAAAAA+TGG + tig0022499:26707-26726 None:intergenic 15.0%
!! AATTATAAAACAAAAGAAAC+AGG - tig0022499:26726-26745 Msa1401030:intron 15.0%
!! ATTATAAAACAAAAGAAACA+GGG - tig0022499:26727-26746 Msa1401030:intron 15.0%
!!! AAATATAAATTTTCAAGTTC+AGG - tig0022499:27103-27122 Msa1401030:intron 15.0%
!!! AATATAAATTTTCAAGTTCA+GGG - tig0022499:27104-27123 Msa1401030:intron 15.0%
!! TCGAATAAATAATAATAGAA+TGG + tig0022499:28540-28559 None:intergenic 15.0%
!!! TTATATTTGTTAAAGTGAAA+AGG - tig0022499:29417-29436 Msa1401030:intron 15.0%
!!! GTTTTAAATAAAGGAATAAT+TGG + tig0022499:29480-29499 None:intergenic 15.0%
!!! ACTTTTGAAGTTTTAAATAA+AGG + tig0022499:29489-29508 None:intergenic 15.0%
!!! TTCTATTATATTTCTATGTT+TGG + tig0022499:29625-29644 None:intergenic 15.0%
!! TACTATTAGTAAACATTATT+AGG + tig0022499:29879-29898 None:intergenic 15.0%
!! TAATAATGTTTACTAATAGT+AGG - tig0022499:29878-29897 Msa1401030:intron 15.0%
!! AAAAAAGAATGAAGAATTGT+TGG + tig0022499:25291-25310 None:intergenic 20.0%
!!! GTAATTGACTAGTATATTTT+TGG - tig0022499:25403-25422 Msa1401030:CDS 20.0%
!! ATCATACAAATTGAAAATCA+AGG + tig0022499:25491-25510 None:intergenic 20.0%
!! CTGTACCTAAAATAATTTAT+TGG + tig0022499:25603-25622 None:intergenic 20.0%
!!! GTTGGTTAGATTATTTTTTT+AGG - tig0022499:25792-25811 Msa1401030:intron 20.0%
!! TTAAAAAAATGGACAATACT+TGG + tig0022499:25945-25964 None:intergenic 20.0%
!!! AATATTTTCACATTCTTTCA+AGG - tig0022499:25978-25997 Msa1401030:intron 20.0%
!! AATATTGTGATGTATTCTTA+GGG - tig0022499:26010-26029 Msa1401030:intron 20.0%
!!! TTGAAGTTTTGTTAATTTCA+GGG + tig0022499:27240-27259 None:intergenic 20.0%
!!! ATTGAAGTTTTGTTAATTTC+AGG + tig0022499:27239-27258 None:intergenic 20.0%
!!! TGTATAAATTTTCAAGTTCA+GGG + tig0022499:26340-26359 None:intergenic 20.0%
!!! ATGTATAAATTTTCAAGTTC+AGG + tig0022499:26341-26360 None:intergenic 20.0%
!!! GTTTGTTAATAAAATACATG+GGG + tig0022499:26467-26486 None:intergenic 20.0%
!!! TTTTGAAGAAAAAAAATGGA+TGG + tig0022499:26703-26722 None:intergenic 20.0%
!! TTATAAAACAAAAGAAACAG+GGG - tig0022499:26728-26747 Msa1401030:intron 20.0%
!!! ATATAAATTTTCAAGTTCAG+GGG - tig0022499:27105-27124 Msa1401030:intron 20.0%
!!! ATTGAAGTTTTGTTAATTTC+AGG - tig0022499:27239-27258 Msa1401030:intron 20.0%
!!! TTGAAGTTTTGTTAATTTCA+GGG - tig0022499:27240-27259 Msa1401030:intron 20.0%
!! TTAAAGTTGTATGAGTAAAT+AGG + tig0022499:27306-27325 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - tig0022499:27399-27418 Msa1401030:CDS 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - tig0022499:27400-27419 Msa1401030:CDS 20.0%
!! TTCTATTGAAAATTGAAATC+AGG - tig0022499:27735-27754 Msa1401030:CDS 20.0%
!!! ATATATCATCATTTTCTTGA+AGG + tig0022499:28101-28120 None:intergenic 20.0%
!!! AATGTCAAAAAAACTGATTT+TGG - tig0022499:28222-28241 Msa1401030:intron 20.0%
!!! ATGTCAAAAAAACTGATTTT+GGG - tig0022499:28223-28242 Msa1401030:intron 20.0%
!! TCTATTATTATTTATTCGAG+AGG - tig0022499:28541-28560 Msa1401030:intron 20.0%
!!! CAAAAGACCATTTTAAAAAT+AGG - tig0022499:29385-29404 Msa1401030:intron 20.0%
!!! GATTGTTCCTATTTTTAAAA+TGG + tig0022499:29395-29414 None:intergenic 20.0%
!! TTCAAATGTAACAAGAATAA+GGG + tig0022499:29559-29578 None:intergenic 20.0%
!!! AATATTAAAGGAGTTTTGTT+AGG + tig0022499:29904-29923 None:intergenic 20.0%
!! TAATTGTTATACAGATTCAA+AGG - tig0022499:30259-30278 Msa1401030:intron 20.0%
!! TAAAAACTTCAAAAGATGAA+CGG - tig0022499:30436-30455 Msa1401030:five_prime_UTR 20.0%
!! TTATGATTTTTCTCTCAATC+TGG - tig0022499:25447-25466 Msa1401030:CDS 25.0%
!!! ATTATTTTAGGTACAGATCA+AGG - tig0022499:25607-25626 Msa1401030:intron 25.0%
! TTCTGACATACATATTGTAA+AGG - tig0022499:25685-25704 Msa1401030:intron 25.0%
! TCTGACATACATATTGTAAA+GGG - tig0022499:25686-25705 Msa1401030:intron 25.0%
! AATAGTTTCTACAACAACTT+AGG + tig0022499:25749-25768 None:intergenic 25.0%
!! CATTTTTCATGAATTAGTGT+TGG - tig0022499:25774-25793 Msa1401030:intron 25.0%
!!! GTTAGATTATTTTTTTAGGG+TGG - tig0022499:25796-25815 Msa1401030:intron 25.0%
! GAATATTGTGATGTATTCTT+AGG - tig0022499:26009-26028 Msa1401030:intron 25.0%
!! AAAGTGATACTCATTTTGAA+AGG + tig0022499:26071-26090 None:intergenic 25.0%
!!! TGAAGTTTTGTTAATTTCAG+GGG + tig0022499:27241-27260 None:intergenic 25.0%
!!! TATAAATTTTCAAGTTCAGG+GGG + tig0022499:27106-27125 None:intergenic 25.0%
!!! GTATAAATTTTCAAGTTCAG+GGG + tig0022499:26339-26358 None:intergenic 25.0%
!!! TATTTTAAGCTCTACATTCT+TGG - tig0022499:26421-26440 Msa1401030:intron 25.0%
!!! TGTACTCATGTTTTTATTCA+TGG + tig0022499:26510-26529 None:intergenic 25.0%
! GTTTATAGAAGACAAAACAA+AGG - tig0022499:26753-26772 Msa1401030:intron 25.0%
! AACACTAAAAAAAAAGCAAG+AGG + tig0022499:26815-26834 None:intergenic 25.0%
! AGGATTATAAAAACAACTAG+CGG - tig0022499:26860-26879 Msa1401030:CDS 25.0%
! ACAAAGTAAACAACTTATCT+TGG + tig0022499:26912-26931 None:intergenic 25.0%
!!! TGGTTTGTTGATAAAATACA+TGG - tig0022499:26983-27002 Msa1401030:intron 25.0%
!!! GGTTTGTTGATAAAATACAT+GGG - tig0022499:26984-27003 Msa1401030:intron 25.0%
!!! TATTTTAAGCTCTACATTCT+TGG + tig0022499:26421-26440 None:intergenic 25.0%
!!! TATAAATTTTCAAGTTCAGG+GGG - tig0022499:27106-27125 Msa1401030:intron 25.0%
!!! TGAAGTTTTGTTAATTTCAG+GGG - tig0022499:27241-27260 Msa1401030:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + tig0022499:27346-27365 None:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + tig0022499:27347-27366 None:intergenic 25.0%
! ATTGCAAATAGATTAAGGAA+TGG + tig0022499:27465-27484 None:intergenic 25.0%
! TTCCTTAATCTATTTGCAAT+TGG - tig0022499:27465-27484 Msa1401030:CDS 25.0%
!!! GGTTAAATTTTTTACTAGTG+AGG - tig0022499:27554-27573 Msa1401030:CDS 25.0%
!!! GGTTAAATTTTTTACTAGTG+AGG - tig0022499:27554-27573 Msa1401030:CDS 25.0%
!! CAATTTTCAATAGAAAAAGC+AGG + tig0022499:27730-27749 None:intergenic 25.0%
! AAGAAAATGATGATATATCG+TGG - tig0022499:28103-28122 Msa1401030:intron 25.0%
! AGAAAATGATGATATATCGT+GGG - tig0022499:28104-28123 Msa1401030:intron 25.0%
!!! TGTCAAAAAAACTGATTTTG+GGG - tig0022499:28224-28243 Msa1401030:intron 25.0%
! ATGATTCTGTTAATCCAAAT+TGG - tig0022499:28274-28293 Msa1401030:intron 25.0%
! GTTAATAGAAATGAAAACCT+AGG + tig0022499:28503-28522 None:intergenic 25.0%
! TTGAATCTAATGAATGTTGA+GGG - tig0022499:28970-28989 Msa1401030:five_prime_UTR 25.0%
!!! TGCTACCAATTTTTTTTTTG+TGG - tig0022499:29231-29250 Msa1401030:intron 25.0%
! CACATCCACAAAAAAAAAAT+TGG + tig0022499:29239-29258 None:intergenic 25.0%
!!! ATTTTTTTTTTGTGGATGTG+TGG - tig0022499:29239-29258 Msa1401030:intron 25.0%
! GGATTGATAAAAAGAAGATA+TGG - tig0022499:29354-29373 Msa1401030:intron 25.0%
! TTTGTTAAAGTGAAAAGGAA+AGG - tig0022499:29422-29441 Msa1401030:intron 25.0%
!!! TCTATTTTTCTCTCATTCAA+AGG - tig0022499:29512-29531 Msa1401030:intron 25.0%
! TCAAATGTAACAAGAATAAG+GGG + tig0022499:29558-29577 None:intergenic 25.0%
! CTTCAAATGTAACAAGAATA+AGG + tig0022499:29560-29579 None:intergenic 25.0%
! ATAGAATACGATTACACAAT+AGG - tig0022499:29670-29689 Msa1401030:intron 25.0%
! CACATTAATGTAATAATTGC+TGG - tig0022499:29835-29854 Msa1401030:intron 25.0%
! TATAAGAGTAAGAATGTGAA+TGG - tig0022499:29933-29952 Msa1401030:intron 25.0%
!! ACATTATTGTTATTATCACC+CGG - tig0022499:30206-30225 Msa1401030:intron 25.0%
! AGATTCAAATTGAAAACCAA+GGG - tig0022499:30289-30308 Msa1401030:intron 25.0%
! AAAAACTTCAAAAGATGAAC+GGG - tig0022499:30437-30456 Msa1401030:five_prime_UTR 25.0%
GTGTGTATATTGTCTACTTT+GGG + tig0022499:25027-25046 None:intergenic 30.0%
ATCGAATGAGAGAGAAAAAT+AGG - tig0022499:25092-25111 Msa1401030:CDS 30.0%
AGAGAGAAAAATAGGTTATC+CGG - tig0022499:25100-25119 Msa1401030:CDS 30.0%
CTGCTTATTAGATTAGGTTA+GGG + tig0022499:25133-25152 None:intergenic 30.0%
TCTGCTTATTAGATTAGGTT+AGG + tig0022499:25134-25153 None:intergenic 30.0%
AAGAGTCTGCTTATTAGATT+AGG + tig0022499:25139-25158 None:intergenic 30.0%
AAGAGAAGATACCTTGAAAT+CGG + tig0022499:25335-25354 None:intergenic 30.0%
GTTAAAGTGATTGATGAACA+CGG + tig0022499:25561-25580 None:intergenic 30.0%
CTGACATACATATTGTAAAG+GGG - tig0022499:25687-25706 Msa1401030:intron 30.0%
!! TGATACTCATTTTGAAAGGA+GGG + tig0022499:26067-26086 None:intergenic 30.0%
! CCTATTTACTCAAGTTGTAT+TGG + tig0022499:26138-26157 None:intergenic 30.0%
CCAATACAACTTGAGTAAAT+AGG - tig0022499:26135-26154 Msa1401030:intron 30.0%
TGACGAAACTTACAATTTCA+GGG + tig0022499:27270-27289 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+AGG + tig0022499:27269-27288 None:intergenic 30.0%
!!! GAAGTTTTGTTAATTTCAGG+GGG + tig0022499:27242-27261 None:intergenic 30.0%
ATTAACGTTGTGCAATTTCA+GGG + tig0022499:27212-27231 None:intergenic 30.0%
TGACTAACAGAAGAATTTGA+CGG + tig0022499:27177-27196 None:intergenic 30.0%
AACAAACTATTCAACCTAGA+AGG - tig0022499:26480-26499 Msa1401030:CDS 30.0%
GGGATTATAAAAACAACTAG+CGG + tig0022499:26592-26611 None:intergenic 30.0%
TGTACTCATGTTCTTATTCA+TGG - tig0022499:26942-26961 Msa1401030:intron 30.0%
TGACTAACAGAAGAATTTGA+CGG - tig0022499:27177-27196 Msa1401030:intron 30.0%
ATTAACGTTGTGCAATTTCA+GGG - tig0022499:27212-27231 Msa1401030:intron 30.0%
!!! GAAGTTTTGTTAATTTCAGG+GGG - tig0022499:27242-27261 Msa1401030:intron 30.0%
!!! AAGTTTTGTTAATTTCAGGG+GGG - tig0022499:27243-27262 Msa1401030:intron 30.0%
TTGACGAAACTTACAATTTC+AGG - tig0022499:27269-27288 Msa1401030:intron 30.0%
TGACGAAACTTACAATTTCA+GGG - tig0022499:27270-27289 Msa1401030:intron 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + tig0022499:27361-27380 None:intergenic 30.0%
AGCCAATTGCAAATAGATTA+AGG + tig0022499:27470-27489 None:intergenic 30.0%
TTTAAACTTGTGAGCAAAGA+AGG - tig0022499:27591-27610 Msa1401030:CDS 30.0%
ATTGAAATCAGGACAGATAA+AGG - tig0022499:27746-27765 Msa1401030:CDS 30.0%
TAATTGCTTTCCATAAGACT+GGG + tig0022499:27823-27842 None:intergenic 30.0%
ATAATTGCTTTCCATAAGAC+TGG + tig0022499:27824-27843 None:intergenic 30.0%
GAAAATGATGATATATCGTG+GGG - tig0022499:28105-28124 Msa1401030:intron 30.0%
TAGAACTGATCATCCAAATA+TGG + tig0022499:28572-28591 None:intergenic 30.0%
ATAATGATGTTAACATGCAG+AGG - tig0022499:28930-28949 Msa1401030:five_prime_UTR 30.0%
! ATTAGATTCAAGACACCTTT+TGG + tig0022499:28961-28980 None:intergenic 30.0%
CTTGAATCTAATGAATGTTG+AGG - tig0022499:28969-28988 Msa1401030:five_prime_UTR 30.0%
! TTTTTACATGGTAGATGGTA+AGG + tig0022499:28996-29015 None:intergenic 30.0%
ACCTGCTGTATAAAACAATA+GGG + tig0022499:29209-29228 None:intergenic 30.0%
AACCTGCTGTATAAAACAAT+AGG + tig0022499:29210-29229 None:intergenic 30.0%
CATCTTTCTCGAAACTATAA+GGG + tig0022499:29274-29293 None:intergenic 30.0%
ACATCTTTCTCGAAACTATA+AGG + tig0022499:29275-29294 None:intergenic 30.0%
! CTTTTTATCAATCCCAACAT+AGG + tig0022499:29348-29367 None:intergenic 30.0%
AAATGTAACAAGAATAAGGG+GGG + tig0022499:29556-29575 None:intergenic 30.0%
CAAATGTAACAAGAATAAGG+GGG + tig0022499:29557-29576 None:intergenic 30.0%
! TATATTTCTATGTTTGGTCC+TGG + tig0022499:29619-29638 None:intergenic 30.0%
TAGATAAATAGGGAATCTGA+AGG + tig0022499:29771-29790 None:intergenic 30.0%
AGGCAGTTACTAGATAAATA+GGG + tig0022499:29781-29800 None:intergenic 30.0%
TAGGCAGTTACTAGATAAAT+AGG + tig0022499:29782-29801 None:intergenic 30.0%
ATGTGCAACAGTTATGTATT+AGG + tig0022499:29820-29839 None:intergenic 30.0%
GAAAAAGATGAGTTCAATTG+AGG - tig0022499:29994-30013 Msa1401030:intron 30.0%
TCCATTGTTTCCTTGAATTA+TGG - tig0022499:30105-30124 Msa1401030:intron 30.0%
ACCATAATTCAAGGAAACAA+TGG + tig0022499:30109-30128 None:intergenic 30.0%
TTTCCTTGAATTATGGTTAC+AGG - tig0022499:30112-30131 Msa1401030:intron 30.0%
AATTATGGTTACAGGAGTAA+GGG - tig0022499:30120-30139 Msa1401030:intron 30.0%
CAGATTCAAATTGAAAACCA+AGG - tig0022499:30288-30307 Msa1401030:intron 30.0%
TTTGAGAAACAGAAACAGAT+AGG - tig0022499:30330-30349 Msa1401030:five_prime_UTR 30.0%
! GAAGTTTTTAAATTGTCCAC+CGG + tig0022499:30426-30445 None:intergenic 30.0%
CGTGTGTATATTGTCTACTT+TGG + tig0022499:25028-25047 None:intergenic 35.0%
AAGTAGACAATATACACACG+TGG - tig0022499:25028-25047 Msa1401030:CDS 35.0%
AGTAGACAATATACACACGT+GGG - tig0022499:25029-25048 Msa1401030:CDS 35.0%
! TTAGCAGAGTCCTAGATTTT+TGG - tig0022499:25163-25182 Msa1401030:CDS 35.0%
AAAGCAGACTCCAAAAATCT+AGG + tig0022499:25176-25195 None:intergenic 35.0%
ATGAAGAATTGTTGGAGAAG+AGG + tig0022499:25283-25302 None:intergenic 35.0%
AGAGAAGATACCTTGAAATC+GGG + tig0022499:25334-25353 None:intergenic 35.0%
CATGAACTAACGCATATACA+TGG + tig0022499:25526-25545 None:intergenic 35.0%
TGTAGTTGCATCATGTTCTT+TGG - tig0022499:25650-25669 Msa1401030:intron 35.0%
AGTTTCTACAACAACTTAGG+TGG + tig0022499:25746-25765 None:intergenic 35.0%
!!! ATTTTTTTAGGGTGGCACTT+TGG - tig0022499:25804-25823 Msa1401030:intron 35.0%
CATTAAATCCTGACCATTGA+TGG + tig0022499:25901-25920 None:intergenic 35.0%
CATCAATGGTCAGGATTTAA+TGG - tig0022499:25899-25918 Msa1401030:intron 35.0%
CAATACTTGGATGCCATTAA+TGG + tig0022499:25932-25951 None:intergenic 35.0%
!! ATACTCATTTTGAAAGGAGG+GGG + tig0022499:26065-26084 None:intergenic 35.0%
!! GATACTCATTTTGAAAGGAG+GGG + tig0022499:26066-26085 None:intergenic 35.0%
!! GTGATACTCATTTTGAAAGG+AGG + tig0022499:26068-26087 None:intergenic 35.0%
ACGAAACTTACAATTTCAGG+GGG + tig0022499:27272-27291 None:intergenic 35.0%
GACGAAACTTACAATTTCAG+GGG + tig0022499:27271-27290 None:intergenic 35.0%
TTAACGTTGTGCAATTTCAG+GGG + tig0022499:27213-27232 None:intergenic 35.0%
GATTAACGTTGTGCAATTTC+AGG + tig0022499:27211-27230 None:intergenic 35.0%
TAACAGAAGAATTTGACGGA+GGG + tig0022499:27181-27200 None:intergenic 35.0%
TGCACATAAGTGCAAAACTT+CGG + tig0022499:26310-26329 None:intergenic 35.0%
TTATTCATGGTACACCTTCT+AGG + tig0022499:26955-26974 None:intergenic 35.0%
CAAAAGAAATAAGGAGCCAA+AGG - tig0022499:26621-26640 Msa1401030:intron 35.0%
TTATTCATGGTACACCTTCT+AGG - tig0022499:26955-26974 Msa1401030:intron 35.0%
AACAAACCATTCAACCTAGA+AGG + tig0022499:26972-26991 None:intergenic 35.0%
! TTTTGCAAGTGCAAAACTTC+AGG - tig0022499:27131-27150 Msa1401030:intron 35.0%
TTTGCAAGTGCAAAACTTCA+GGG - tig0022499:27132-27151 Msa1401030:intron 35.0%
TAACAGAAGAATTTGACGGA+GGG - tig0022499:27181-27200 Msa1401030:intron 35.0%
GATTAACGTTGTGCAATTTC+AGG - tig0022499:27211-27230 Msa1401030:intron 35.0%
TTAACGTTGTGCAATTTCAG+GGG - tig0022499:27213-27232 Msa1401030:intron 35.0%
GACGAAACTTACAATTTCAG+GGG - tig0022499:27271-27290 Msa1401030:intron 35.0%
ACGAAACTTACAATTTCAGG+GGG - tig0022499:27272-27291 Msa1401030:intron 35.0%
!! AAGCGACAGTCATTTTGAAA+CGG - tig0022499:27491-27510 Msa1401030:CDS 35.0%
AGTTTAAACTTGTGAGCAAC+AGG - tig0022499:27647-27666 Msa1401030:CDS 35.0%
GTTTAAACTTGTGAGCAACA+GGG - tig0022499:27648-27667 Msa1401030:CDS 35.0%
AGCAACAGGGTTATTTATGT+TGG - tig0022499:27661-27680 Msa1401030:CDS 35.0%
AAGCAATTATATGAAACCCC+CGG - tig0022499:27834-27853 Msa1401030:CDS 35.0%
! TCATCATTGGTTGAAAACAC+AGG + tig0022499:27949-27968 None:intergenic 35.0%
ATTAGGTGACAATGTGTCTT+CGG - tig0022499:28047-28066 Msa1401030:intron 35.0%
AAACCAAGAATATCTGGCAA+TGG + tig0022499:28138-28157 None:intergenic 35.0%
TCAGGAAAACCAAGAATATC+TGG + tig0022499:28144-28163 None:intergenic 35.0%
TGCTGGACAGAAAAAATTTC+AGG + tig0022499:28162-28181 None:intergenic 35.0%
!! AAAAAACTGATTTTGGGGAG+TGG - tig0022499:28229-28248 Msa1401030:intron 35.0%
!! AAAAACTGATTTTGGGGAGT+GGG - tig0022499:28230-28249 Msa1401030:intron 35.0%
ACTTGAACAAGAACAATCCT+AGG - tig0022499:28372-28391 Msa1401030:intron 35.0%
TAGAAATGAAAACCTAGGTG+AGG + tig0022499:28498-28517 None:intergenic 35.0%
TCGAGAGGAAAATCCATATT+TGG - tig0022499:28556-28575 Msa1401030:intron 35.0%
ATACAACCTAAAGGGGAATA+GGG + tig0022499:28634-28653 None:intergenic 35.0%
!! ATATCCTACTTTTCTGATGC+AGG - tig0022499:28669-28688 Msa1401030:intron 35.0%
AAATCCATATATGAACCTGG+AGG + tig0022499:29023-29042 None:intergenic 35.0%
GGAAAATCCATATATGAACC+TGG + tig0022499:29026-29045 None:intergenic 35.0%
ACAAGCTCAATTTAAGAGGA+CGG + tig0022499:29047-29066 None:intergenic 35.0%
TCCTCTTAAATTGAGCTTGT+TGG - tig0022499:29047-29066 Msa1401030:intron 35.0%
ACCAACAAGCTCAATTTAAG+AGG + tig0022499:29051-29070 None:intergenic 35.0%
ATAAAAATCGACATACACGC+CGG + tig0022499:29081-29100 None:intergenic 35.0%
!! TCCCTATTGTTTTATACAGC+AGG - tig0022499:29205-29224 Msa1401030:intron 35.0%
TTCTTCTTCATGTCCTATGT+TGG - tig0022499:29332-29351 Msa1401030:intron 35.0%
TCTTCTTCATGTCCTATGTT+GGG - tig0022499:29333-29352 Msa1401030:intron 35.0%
AATGTAACAAGAATAAGGGG+GGG + tig0022499:29555-29574 None:intergenic 35.0%
TAGGAAGCAGTTATGTTTCT+AGG + tig0022499:29801-29820 None:intergenic 35.0%
! TTTTTCTCAGAAGTTTCTGC+AGG + tig0022499:29980-29999 None:intergenic 35.0%
ACTCCTGTAACCATAATTCA+AGG + tig0022499:30118-30137 None:intergenic 35.0%
GAATTATGGTTACAGGAGTA+AGG - tig0022499:30119-30138 Msa1401030:intron 35.0%
AAAGATGAACGGGATAAATC+AGG - tig0022499:30447-30466 Msa1401030:five_prime_UTR 35.0%
TTGCTTTCTGCTTACATCAT+GGG + tig0022499:30514-30533 None:intergenic 35.0%
TTTGCTTTCTGCTTACATCA+TGG + tig0022499:30515-30534 None:intergenic 35.0%
TGATGTAAGCAGAAAGCAAA+TGG - tig0022499:30515-30534 Msa1401030:five_prime_UTR 35.0%
AAGTTACCAATGAACATGAG+AGG - tig0022499:30550-30569 Msa1401030:five_prime_UTR 35.0%
AGTTACCAATGAACATGAGA+GGG - tig0022499:30551-30570 Msa1401030:five_prime_UTR 35.0%
AAATCGGGAAAAAGCGGTAA+TGG + tig0022499:25319-25338 None:intergenic 40.0%
ACCTTGAAATCGGGAAAAAG+CGG + tig0022499:25325-25344 None:intergenic 40.0%
CATACATATTGTAAAGGGGC+TGG - tig0022499:25691-25710 Msa1401030:intron 40.0%
!! TAATGGCATGGTGCCATTAA+TGG + tig0022499:25832-25851 None:intergenic 40.0%
ATGGTCAGGATTTAATGGCA+CGG - tig0022499:25904-25923 Msa1401030:intron 40.0%
CGAAACTTACAATTTCAGGG+GGG + tig0022499:27273-27292 None:intergenic 40.0%
TAACGTTGTGCAATTTCAGG+GGG + tig0022499:27214-27233 None:intergenic 40.0%
AACAGAAGAATTTGACGGAG+GGG + tig0022499:27182-27201 None:intergenic 40.0%
CTAACAGAAGAATTTGACGG+AGG + tig0022499:27180-27199 None:intergenic 40.0%
ACATAAGTGCAAAACTTCGG+GGG + tig0022499:26307-26326 None:intergenic 40.0%
CACATAAGTGCAAAACTTCG+GGG + tig0022499:26308-26327 None:intergenic 40.0%
GCACATAAGTGCAAAACTTC+GGG + tig0022499:26309-26328 None:intergenic 40.0%
TGGAAAAAAGACTGCACCTT+TGG + tig0022499:26640-26659 None:intergenic 40.0%
ATAAGCTTGCATGAAGCACA+TGG - tig0022499:26670-26689 Msa1401030:CDS 40.0%
CAATGTTAGCAAAATGCTGC+AGG - tig0022499:26787-26806 Msa1401030:intron 40.0%
TTGCAAGTGCAAAACTTCAG+GGG - tig0022499:27133-27152 Msa1401030:intron 40.0%
CTAACAGAAGAATTTGACGG+AGG - tig0022499:27180-27199 Msa1401030:intron 40.0%
AACAGAAGAATTTGACGGAG+GGG - tig0022499:27182-27201 Msa1401030:intron 40.0%
TAACGTTGTGCAATTTCAGG+GGG - tig0022499:27214-27233 Msa1401030:intron 40.0%
CGAAACTTACAATTTCAGGG+GGG - tig0022499:27273-27292 Msa1401030:intron 40.0%
GAAACTTACAATTTCAGGGG+GGG - tig0022499:27274-27293 Msa1401030:intron 40.0%
!!! GACAGTCATTTTGAAACGGA+GGG - tig0022499:27495-27514 Msa1401030:CDS 40.0%
! GTGCTTTTAACGACACAAGA+AGG - tig0022499:27533-27552 Msa1401030:CDS 40.0%
TGAACGATGAAAAGAATCCG+GGG + tig0022499:27854-27873 None:intergenic 40.0%
GTGAACGATGAAAAGAATCC+GGG + tig0022499:27855-27874 None:intergenic 40.0%
GGTGAACGATGAAAAGAATC+CGG + tig0022499:27856-27875 None:intergenic 40.0%
! TTTTCATCGTTCACCTGTCA+GGG - tig0022499:27861-27880 Msa1401030:five_prime_UTR 40.0%
TCAACCAATGATGAATGTCC+TGG - tig0022499:27955-27974 Msa1401030:intron 40.0%
TTGCCTATCATGCTGTGAAA+CGG + tig0022499:27998-28017 None:intergenic 40.0%
AGAATATCTGGCAATGGATC+TGG + tig0022499:28132-28151 None:intergenic 40.0%
GATCCATTGCCAGATATTCT+TGG - tig0022499:28132-28151 Msa1401030:intron 40.0%
! TTTTTCTGTCCAGCATGATC+AGG - tig0022499:28167-28186 Msa1401030:intron 40.0%
TGTTGTTGAACCAACACAAC+AGG - tig0022499:28320-28339 Msa1401030:intron 40.0%
GAGAAACAAACCTGTTGTGT+TGG + tig0022499:28333-28352 None:intergenic 40.0%
GGATTGTTCTTGTTCAAGTC+AGG + tig0022499:28371-28390 None:intergenic 40.0%
AGGTAAGTAAAGTTTGGCCT+AGG + tig0022499:28392-28411 None:intergenic 40.0%
AAATGAAAACCTAGGTGAGG+AGG + tig0022499:28495-28514 None:intergenic 40.0%
GGGAATGAACTATATGCACA+TGG + tig0022499:28614-28633 None:intergenic 40.0%
TTCATTCCCTATTCCCCTTT+AGG - tig0022499:28625-28644 Msa1401030:intron 40.0%
CATACAACCTAAAGGGGAAT+AGG + tig0022499:28635-28654 None:intergenic 40.0%
!! ATTCCCCTTTAGGTTGTATG+CGG - tig0022499:28635-28654 Msa1401030:intron 40.0%
!! AGATTGTTGACTTCTCCAGA+TGG + tig0022499:28724-28743 None:intergenic 40.0%
AAACTAAGCCTAGAATGCGT+TGG - tig0022499:28782-28801 Msa1401030:intron 40.0%
ACAAAAGCTTCGTGAAGTTC+TGG + tig0022499:28811-28830 None:intergenic 40.0%
! AGAACTTCACGAAGCTTTTG+TGG - tig0022499:28810-28829 Msa1401030:intron 40.0%
GTCAAACGAAGGATGAGATT+AGG + tig0022499:28881-28900 None:intergenic 40.0%
GAAGAAACGTTCATGAGAGA+AGG + tig0022499:28903-28922 None:intergenic 40.0%
! GTGGCTTTTTACATGGTAGA+TGG + tig0022499:29001-29020 None:intergenic 40.0%
GTACACTCTTGTATACCTTC+TGG + tig0022499:29179-29198 None:intergenic 40.0%
CACAGAAACTTGATGAAACC+AGG - tig0022499:29598-29617 Msa1401030:intron 40.0%
! AGGGAATCACTGAAGCATTA+CGG - tig0022499:30139-30158 Msa1401030:intron 40.0%
ATGCCAAAACTTCGAAGTTC+CGG + tig0022499:30228-30247 None:intergenic 40.0%
TCATCTCAAGATGTTTCCCT+TGG + tig0022499:30308-30327 None:intergenic 40.0%
GACATTCCTAAAGACATACC+TGG - tig0022499:30480-30499 Msa1401030:five_prime_UTR 40.0%
CTTTCTCCAGGTATGTCTTT+AGG + tig0022499:30489-30508 None:intergenic 40.0%
ATCTACCCTCTCATGTTCAT+TGG + tig0022499:30559-30578 None:intergenic 40.0%
! TGAATCTTCGCTCGTTTTGT+TGG + tig0022499:30603-30622 None:intergenic 40.0%
CTCCTACGCTACTTATCTTG+CGG + tig0022499:25060-25079 None:intergenic 45.0%
ATTAGGTTAGGGCGATTAGC+CGG + tig0022499:25122-25141 None:intergenic 45.0%
!!! ACCGCTTTTTCCCGATTTCA+AGG - tig0022499:25321-25340 Msa1401030:CDS 45.0%
!! TGGCACTTTGGTGCCATTAA+TGG - tig0022499:25816-25835 Msa1401030:intron 45.0%
ACATCACACACACACACTTG+GGG + tig0022499:25866-25885 None:intergenic 45.0%
CACATCACACACACACACTT+GGG + tig0022499:25867-25886 None:intergenic 45.0%
ACACATCACACACACACACT+TGG + tig0022499:25868-25887 None:intergenic 45.0%
TGTGTGTGTGATGTGTGTGT+TGG - tig0022499:25872-25891 Msa1401030:intron 45.0%
GTGTGTGTGATGTGTGTGTT+GGG - tig0022499:25873-25892 Msa1401030:intron 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - tig0022499:25916-25935 Msa1401030:intron 45.0%
AACGTTGTGCAATTTCAGGG+GGG + tig0022499:27215-27234 None:intergenic 45.0%
ACAGAAGAATTTGACGGAGG+GGG + tig0022499:27183-27202 None:intergenic 45.0%
CATAAGTGCAAAACTTCGGG+GGG + tig0022499:26306-26325 None:intergenic 45.0%
! GGTACACCTTCTAGGTTGAA+TGG - tig0022499:26963-26982 Msa1401030:intron 45.0%
TGCAAGTGCAAAACTTCAGG+GGG - tig0022499:27134-27153 Msa1401030:intron 45.0%
!!! CGACAGTCATTTTGAAACGG+AGG - tig0022499:27494-27513 Msa1401030:CDS 45.0%
AGAACAGGTGAAGACGAAGA+AGG + tig0022499:27799-27818 None:intergenic 45.0%
ACCTGTTCTTCCCAGTCTTA+TGG - tig0022499:27810-27829 Msa1401030:CDS 45.0%
TCCATAAGACTGGGAAGAAC+AGG + tig0022499:27814-27833 None:intergenic 45.0%
GAACGATGAAAAGAATCCGG+GGG + tig0022499:27853-27872 None:intergenic 45.0%
! CTTTTCATCGTTCACCTGTC+AGG - tig0022499:27860-27879 Msa1401030:five_prime_UTR 45.0%
TTTCATCGTTCACCTGTCAG+GGG - tig0022499:27862-27881 Msa1401030:five_prime_UTR 45.0%
! CGATGATGTAGCTTGCAATG+AGG + tig0022499:27905-27924 None:intergenic 45.0%
ACAGGTCGAACACTTCTGAT+CGG + tig0022499:27931-27950 None:intergenic 45.0%
ACCAATGATGAATGTCCTGG+CGG - tig0022499:27958-27977 Msa1401030:intron 45.0%
TGCCTATCATGCTGTGAAAC+GGG + tig0022499:27997-28016 None:intergenic 45.0%
GAGAAGTGAATGTTGCTGAG+TGG + tig0022499:28077-28096 None:intergenic 45.0%
! TGTTTTCCACCTGATCATGC+TGG + tig0022499:28179-28198 None:intergenic 45.0%
! CCAAGAAGCTGACTCCAATT+TGG + tig0022499:28291-28310 None:intergenic 45.0%
CCAAATTGGAGTCAGCTTCT+TGG - tig0022499:28288-28307 Msa1401030:intron 45.0%
GCTGGGAGGTAAGTAAAGTT+TGG + tig0022499:28398-28417 None:intergenic 45.0%
TCTTAAACCTCCAGCTCCTA+AGG + tig0022499:28443-28462 None:intergenic 45.0%
ACAGCCGCATACAACCTAAA+GGG + tig0022499:28642-28661 None:intergenic 45.0%
AACAGCCGCATACAACCTAA+AGG + tig0022499:28643-28662 None:intergenic 45.0%
ATCGCCTGCATCAGAAAAGT+AGG + tig0022499:28676-28695 None:intergenic 45.0%
CATGAGAGAAGGTCAAACGA+AGG + tig0022499:28892-28911 None:intergenic 45.0%
TCCATATATGAACCTGGAGG+TGG + tig0022499:29020-29039 None:intergenic 45.0%
TGGTGACTCAGGTTTGTATC+TGG + tig0022499:29159-29178 None:intergenic 45.0%
TACAAACCTGAGTCACCAGA+AGG - tig0022499:29161-29180 Msa1401030:intron 45.0%
TGTATACCTTCTGGTGACTC+AGG + tig0022499:29170-29189 None:intergenic 45.0%
GATTACACAATAGGCTCCCT+AGG - tig0022499:29679-29698 Msa1401030:intron 45.0%
CCAAGACTCTCGAATTCCTA+GGG + tig0022499:29698-29717 None:intergenic 45.0%
CCTAGGAATTCGAGAGTCTT+GGG - tig0022499:29696-29715 Msa1401030:intron 45.0%
! TGAAGCATTACGGTTGCAGA+TGG - tig0022499:30149-30168 Msa1401030:intron 45.0%
GCGACTTCATGAACAACTTG+AGG - tig0022499:30182-30201 Msa1401030:intron 45.0%
TGCCAAAACTTCGAAGTTCC+GGG + tig0022499:30227-30246 None:intergenic 45.0%
AAGGTGCATTTGAAGGGGAA+GGG + tig0022499:30368-30387 None:intergenic 45.0%
! AGCAGAAGGTGCATTTGAAG+GGG + tig0022499:30373-30392 None:intergenic 45.0%
! CAGCAGAAGGTGCATTTGAA+GGG + tig0022499:30374-30393 None:intergenic 45.0%
AAATTGTCCACCGGAGAAGA+AGG + tig0022499:30417-30436 None:intergenic 45.0%
ACATCATGGGAACTTTCTCC+AGG + tig0022499:30501-30520 None:intergenic 45.0%
!! ATCTTCGCTCGTTTTGTTGG+AGG + tig0022499:30600-30619 None:intergenic 45.0%
CTACGCTACTTATCTTGCGG+CGG + tig0022499:25057-25076 None:intergenic 50.0%
TGGCACCATGCCATTAGATC+AGG - tig0022499:25836-25855 Msa1401030:intron 50.0%
GGCACCATGCCATTAGATCA+GGG - tig0022499:25837-25856 Msa1401030:intron 50.0%
GTGACCCTGATCTAATGGCA+TGG + tig0022499:25844-25863 None:intergenic 50.0%
TTGGGGTGACCCTGATCTAA+TGG + tig0022499:25849-25868 None:intergenic 50.0%
! TGTGTGTTGGGTGCCATCAA+TGG - tig0022499:25885-25904 Msa1401030:intron 50.0%
GCAAGCTTATGAGACGCAGA+TGG + tig0022499:26660-26679 None:intergenic 50.0%
GCAAGTGCAAAACTTCAGGG+GGG - tig0022499:27135-27154 Msa1401030:intron 50.0%
AGGTGAAGACGAAGAAGGCA+TGG + tig0022499:27794-27813 None:intergenic 50.0%
! GATGTAGCTTGCAATGAGGC+AGG + tig0022499:27901-27920 None:intergenic 50.0%
GCTGTGAAACGGGAGGAAAA+GGG + tig0022499:27987-28006 None:intergenic 50.0%
TGCTGTGAAACGGGAGGAAA+AGG + tig0022499:27988-28007 None:intergenic 50.0%
CTATCATGCTGTGAAACGGG+AGG + tig0022499:27994-28013 None:intergenic 50.0%
CTCCCGTTTCACAGCATGAT+AGG - tig0022499:27992-28011 Msa1401030:intron 50.0%
AGATTCTCCCTTCGCTTCTC+AGG - tig0022499:28023-28042 Msa1401030:intron 50.0%
CCTAATGCCTGAGAAGCGAA+GGG + tig0022499:28033-28052 None:intergenic 50.0%
ACCTAATGCCTGAGAAGCGA+AGG + tig0022499:28034-28053 None:intergenic 50.0%
TTCTGTCCAGCATGATCAGG+TGG - tig0022499:28170-28189 Msa1401030:intron 50.0%
CAAATGGGCCCTAGTGAGTT+CGG + tig0022499:28420-28439 None:intergenic 50.0%
CTCCAGCTCCTAAGGCAAAT+GGG + tig0022499:28435-28454 None:intergenic 50.0%
CAGCCGCATACAACCTAAAG+GGG + tig0022499:28641-28660 None:intergenic 50.0%
! TTTTCTGATGCAGGCGATGC+AGG - tig0022499:28678-28697 Msa1401030:intron 50.0%
CAGAAGCAGCATACACCATC+TGG - tig0022499:28706-28725 Msa1401030:intron 50.0%
GTTGATGCTGATGCTGAAGC+TGG + tig0022499:28754-28773 None:intergenic 50.0%
TCTGGACTCCAACGCATTCT+AGG + tig0022499:28793-28812 None:intergenic 50.0%
TACTCTCACTACCACCAAGC+TGG + tig0022499:28846-28865 None:intergenic 50.0%
CATGCAGAGGCTACTCCAAA+AGG - tig0022499:28943-28962 Msa1401030:five_prime_UTR 50.0%
! CCTGGAGGTGGCTTTTTACA+TGG + tig0022499:29008-29027 None:intergenic 50.0%
CCATGTAAAAAGCCACCTCC+AGG - tig0022499:29005-29024 Msa1401030:intron 50.0%
GCCACCTCCAGGTTCATATA+TGG - tig0022499:29016-29035 Msa1401030:intron 50.0%
CCCTAGGAATTCGAGAGTCT+TGG - tig0022499:29695-29714 Msa1401030:intron 50.0%
CCCAAGACTCTCGAATTCCT+AGG + tig0022499:29699-29718 None:intergenic 50.0%
TCTCTCCCTCCAAGAATTCG+AGG - tig0022499:29719-29738 Msa1401030:intron 50.0%
CTCTCCCTCCAAGAATTCGA+GGG - tig0022499:29720-29739 Msa1401030:intron 50.0%
CAAGCCCTCGAATTCTTGGA+GGG + tig0022499:29727-29746 None:intergenic 50.0%
AGACCAAGCCCTCGAATTCT+TGG + tig0022499:29731-29750 None:intergenic 50.0%
! CACCCGGAACTTCGAAGTTT+TGG - tig0022499:30222-30241 Msa1401030:intron 50.0%
! GAAGGTGCATTTGAAGGGGA+AGG + tig0022499:30369-30388 None:intergenic 50.0%
! GCAGCAGAAGGTGCATTTGA+AGG + tig0022499:30375-30394 None:intergenic 50.0%
CGCCGCAAGATAAGTAGCGT+AGG - tig0022499:25055-25074 Msa1401030:CDS 55.0%
! GTTGGGTGCCATCAATGGTC+AGG - tig0022499:25890-25909 Msa1401030:intron 55.0%
! TTTGCTGTCAGACCCCTGAC+AGG + tig0022499:27877-27896 None:intergenic 55.0%
GCCGCCAGGACATTCATCAT+TGG + tig0022499:27962-27981 None:intergenic 55.0%
CCCTTCGCTTCTCAGGCATT+AGG - tig0022499:28030-28049 Msa1401030:intron 55.0%
CACTAGGGCCCATTTGCCTT+AGG - tig0022499:28424-28443 Msa1401030:intron 55.0%
CCTCCAGCTCCTAAGGCAAA+TGG + tig0022499:28436-28455 None:intergenic 55.0%
CCATTTGCCTTAGGAGCTGG+AGG - tig0022499:28433-28452 Msa1401030:intron 55.0%
GTGGAAGCAGTCAACCAGCT+TGG - tig0022499:28829-28848 Msa1401030:intron 55.0%
GAAGCAGTCAACCAGCTTGG+TGG - tig0022499:28832-28851 Msa1401030:intron 55.0%
ATCGACATACACGCCGGTGA+CGG + tig0022499:29075-29094 None:intergenic 55.0%
CCAAGCCCTCGAATTCTTGG+AGG + tig0022499:29728-29747 None:intergenic 55.0%
CCTCCAAGAATTCGAGGGCT+TGG - tig0022499:29725-29744 Msa1401030:intron 55.0%
TGCACCTTCTGCTGCAGTGT+TGG - tig0022499:30380-30399 Msa1401030:five_prime_UTR 55.0%
GTGTCCAACACTGCAGCAGA+AGG + tig0022499:30387-30406 None:intergenic 55.0%
TTGTCCACCGGAGAAGAAGG+TGG + tig0022499:30414-30433 None:intergenic 55.0%
ACCTCCCAGCCGAACTCACT+AGG - tig0022499:28408-28427 Msa1401030:intron 60.0%
CCTCCCAGCCGAACTCACTA+GGG - tig0022499:28409-28428 Msa1401030:intron 60.0%
GGCCCATTTGCCTTAGGAGC+TGG - tig0022499:28430-28449 Msa1401030:intron 60.0%
ACACGCAGTCCTCCTCACCT+AGG - tig0022499:28483-28502 Msa1401030:intron 60.0%
!! GAGCTTGTTGGTGCCGTCAC+CGG - tig0022499:29059-29078 Msa1401030:intron 60.0%
CACGACGCCACCTTCTTCTC+CGG - tig0022499:30404-30423 Msa1401030:five_prime_UTR 60.0%
CCCTAGTGAGTTCGGCTGGG+AGG + tig0022499:28412-28431 None:intergenic 65.0%
GGGCCCTAGTGAGTTCGGCT+GGG + tig0022499:28415-28434 None:intergenic 65.0%
TGGGCCCTAGTGAGTTCGGC+TGG + tig0022499:28416-28435 None:intergenic 65.0%
GACGCCACCTTCTTCTCCGG+TGG - tig0022499:30407-30426 Msa1401030:five_prime_UTR 65.0%
GGAGGAAAAGGGACGCCGCC+AGG + tig0022499:27976-27995 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022499 gene 25024 30626 25024 ID=Msa1401030;Name=Msa1401030
tig0022499 mRNA 25024 30626 25024 ID=Msa1401030-mRNA-1;Parent=Msa1401030;Name=Msa1401030-mRNA-1;_AED=0.25;_eAED=0.25;_QI=537|1|0.87|1|0.71|0.62|8|0|462
tig0022499 exon 25024 25516 25024 ID=Msa1401030-mRNA-1:exon:18149;Parent=Msa1401030-mRNA-1
tig0022499 exon 25609 25666 25609 ID=Msa1401030-mRNA-1:exon:18148;Parent=Msa1401030-mRNA-1
tig0022499 exon 26468 26507 26468 ID=Msa1401030-mRNA-1:exon:18147;Parent=Msa1401030-mRNA-1
tig0022499 exon 26624 26700 26624 ID=Msa1401030-mRNA-1:exon:18146;Parent=Msa1401030-mRNA-1
tig0022499 exon 26788 26959 26788 ID=Msa1401030-mRNA-1:exon:18145;Parent=Msa1401030-mRNA-1
tig0022499 exon 27309 27893 27309 ID=Msa1401030-mRNA-1:exon:18144;Parent=Msa1401030-mRNA-1
tig0022499 exon 28842 29023 28842 ID=Msa1401030-mRNA-1:exon:18143;Parent=Msa1401030-mRNA-1
tig0022499 exon 30308 30626 30308 ID=Msa1401030-mRNA-1:exon:18142;Parent=Msa1401030-mRNA-1
tig0022499 five_prime_UTR 30308 30626 30308 ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499 five_prime_UTR 28842 29023 28842 ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499 five_prime_UTR 27858 27893 27858 ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499 CDS 27309 27857 27309 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499 CDS 26788 26959 26788 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499 CDS 26624 26700 26624 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499 CDS 26468 26507 26468 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499 CDS 25609 25666 25609 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499 CDS 25024 25516 25024 ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
Gene Sequence

>Msa1401030

ATGCCTTCTTCGTCTTCACCTGTTCTTCCCAGTCTTATGGAAAGCAATTATATGAAACCCCCGGATTCTTTTCATCGTTCACCTGTCAGGGGTCTGACAGCAAATCCTGCCTCATTGCAAGCTACATCATCGTATCCGATCAGAAGTGTTCGACCTGTGTTTTCAACCAATGATGAATGTCCTGGCGGCGTCCCTTTTCCTCCCGTTTCACAGCATGATAGGCAATATCAAGATTCTCCCTTCGCTTCTCAGGCATTAGGTGACAATGTGTCTTCGGAAATCCACTCAGCAACATTCACTTCTCACCTTCAAGAAAATGATGATATATCGTGGGGACCAGATCCATTGCCAGATATTCTTGGTTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGAAGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTTGAACAACTAATGACAAGTGATGATTCTGTTAATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGTTGAACCAACACAACAGGCGATGCAGGTTTCTCAGAAGCAGCATACACCATCTGGAGAAGTCAACAATCTTTGTAATCCAGCTTCAGCATCAGCATCAACTGCTTCTCAAACTAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAAGCTTTTGTGGAAGCAGTCAACCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAAGGTGTCTTGAATCTAATGAATGTTGAGGGCCTTACCATCTACCATGTAAAAAGCCACCTCCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAGGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGAATCACTGAAGCATTACGGTTGCAGATGGAACTTCAGAAGCGACTTCATGAACAACTTGAGGTACATTATTGTTATTATCACCCGGAACTTCGAAGTTTTGGCATGTCTGATATTGTAATTGTTATACAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACAGATAGGTGACAACAAGAGCCCTTCCCCTTCAAATGCACCTTCTGCTGCAGTGTTGGACACGACGCCACCTTCTTCTCCGGTGGACAATTTAAAAACTTCAAAAGATGAACGGGATAAATCAGGATGTAACGCTGACATTCCTAAAGACATACCTGGAGAAAGTTCCCATGATGTAAGCAGAAAGCAAATGGCAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTGCCTCCAACAAAACGAGCGAAGATTCAATGA
Protein sequence

>Msa1401030

MPSSSSPVLPSLMESNYMKPPDSFHRSPVRGLTANPASLQATSSYPIRSVRPVFSTNDECPGGVPFPPVSQHDRQYQDSPFASQALGDNVSSEIHSATFTSHLQENDDISWGPDPLPDILGFPEIFSVQHDQVENSACYMNEDNVKKTDFGEWVEQLMTSDDSVNPNWSQLLGDDNVVEPTQQAMQVSQKQHTPSGEVNNLCNPASASASTASQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEVHYCYYHPELRSFGMSDIVIVIQIQRKLQIQIENQGKHLEMMFEKQKQIGDNKSPSPSNAPSAAVLDTTPPSSPVDNLKTSKDERDKSGCNADIPKDIPGESSHDVSRKQMADEAEVTNEHERVDDQFSDVPPTKRAKIQ*