AlfalfaGEDB | Msa1401030

M. sativa cultivar zhongmu-4 / Msa1401030

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401030	XP_013450552.1	92.026	464	12	2	1	462	1	441	0.0	860

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401030	sp\|Q8GUN5\|PHL1_ARATH	43.176	403	169	10	3	383	14	378	3.64e-81	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401030	A0A072UFL5	92.026	464	12	2	1	462	1	441	0.0	860

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TFs/TRs:

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Gene ID	Type	Classification
Msa1401030	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1129630	Msa1401030	0.975953	6.582155e-141	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401030	MtrunA17_Chr7g0274471	92.026	464	12	2	1	462	1	441	0.0	860
Msa1401030	MtrunA17_Chr1g0190301	51.748	429	130	10	47	460	19	385	6.26e-126	371
Msa1401030	MtrunA17_Chr7g0261911	41.591	440	200	10	1	411	26	437	4.73e-89	280
Msa1401030	MtrunA17_Chr1g0175091	46.305	203	72	6	200	398	244	413	7.48e-45	162
Msa1401030	MtrunA17_Chr7g0258551	45.783	166	66	2	215	380	211	352	1.41e-42	155
Msa1401030	MtrunA17_Chr2g0291021	47.674	172	65	2	216	385	49	197	4.15e-42	152
Msa1401030	MtrunA17_Chr7g0254981	39.801	201	88	3	182	372	9	186	1.08e-40	147
Msa1401030	MtrunA17_Chr6g0461641	45.714	175	56	4	212	370	38	189	4.84e-36	137
Msa1401030	MtrunA17_Chr5g0417521	33.488	215	96	5	212	404	11	200	3.64e-30	120
Msa1401030	MtrunA17_Chr8g0356501	34.574	188	89	4	202	381	23	184	1.24e-29	118

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1401030	AT5G29000.2	43.176	403	169	10	3	383	14	378	3.70e-82	260
Msa1401030	AT5G29000.1	44.199	362	140	8	52	383	6	335	9.28e-79	249
Msa1401030	AT5G29000.3	44.199	362	140	8	52	383	6	335	9.28e-79	249
Msa1401030	AT3G04450.4	45.706	326	121	9	93	400	71	358	5.98e-74	238
Msa1401030	AT3G04450.2	45.706	326	121	9	93	400	71	358	5.98e-74	238
Msa1401030	AT3G04450.1	45.706	326	121	9	93	400	111	398	1.83e-73	238
Msa1401030	AT4G28610.1	48.364	275	106	11	106	368	105	355	4.24e-66	218
Msa1401030	AT5G29000.4	39.203	301	149	8	3	284	14	299	7.72e-47	164
Msa1401030	AT2G20400.1	37.151	358	155	11	44	368	40	360	1.49e-46	166
Msa1401030	AT2G20400.2	37.326	359	154	12	44	368	40	361	2.13e-45	163

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Find 123 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGAATATCTGGCAA+TGG	0.585936	tig0022499:+27493	None:intergenic
AAACTAAGCCTAGAATGCGT+TGG	0.536261	tig0022499:-26846	Msa1401030:CDS
AAAGATGAACGGGATAAATC+AGG	0.451170	tig0022499:-25181	Msa1401030:CDS
AAATTGTCCACCGGAGAAGA+AGG	0.507969	tig0022499:+25214	None:intergenic
AAGAAAATGATGATATATCG+TGG	0.571936	tig0022499:-27525	Msa1401030:CDS
AAGAGAAGATACCTTGAAAT+CGG	0.355737	tig0022499:+30296	None:intergenic
AAGAGTCTGCTTATTAGATT+AGG	0.344025	tig0022499:+30492	None:intergenic
AAGCAATTATATGAAACCCC+CGG	0.622265	tig0022499:-27794	Msa1401030:CDS
AAGGTGCATTTGAAGGGGAA+GGG	0.624076	tig0022499:+25263	None:intergenic
AAGTAGACAATATACACACG+TGG	0.698142	tig0022499:-30600	Msa1401030:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTGTATATTGTCTACTTT+GGG	+	tig0022499:25027-25046	None:intergenic	30.0%
ATCGAATGAGAGAGAAAAAT+AGG	-	tig0022499:25092-25111	Msa1401030:CDS	30.0%
AGAGAGAAAAATAGGTTATC+CGG	-	tig0022499:25100-25119	Msa1401030:CDS	30.0%
CTGCTTATTAGATTAGGTTA+GGG	+	tig0022499:25133-25152	None:intergenic	30.0%
TCTGCTTATTAGATTAGGTT+AGG	+	tig0022499:25134-25153	None:intergenic	30.0%
AAGAGTCTGCTTATTAGATT+AGG	+	tig0022499:25139-25158	None:intergenic	30.0%
AAGAGAAGATACCTTGAAAT+CGG	+	tig0022499:25335-25354	None:intergenic	30.0%
GTTAAAGTGATTGATGAACA+CGG	+	tig0022499:25561-25580	None:intergenic	30.0%
CTGACATACATATTGTAAAG+GGG	-	tig0022499:25687-25706	Msa1401030:intron	30.0%
CCAATACAACTTGAGTAAAT+AGG	-	tig0022499:26135-26154	Msa1401030:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022499	gene	25024	30626	25024	ID=Msa1401030;Name=Msa1401030
tig0022499	mRNA	25024	30626	25024	ID=Msa1401030-mRNA-1;Parent=Msa1401030;Name=Msa1401030-mRNA-1;_AED=0.25;_eAED=0.25;_QI=537\|1\|0.87\|1\|0.71\|0.62\|8\|0\|462
tig0022499	exon	25024	25516	25024	ID=Msa1401030-mRNA-1:exon:18149;Parent=Msa1401030-mRNA-1
tig0022499	exon	25609	25666	25609	ID=Msa1401030-mRNA-1:exon:18148;Parent=Msa1401030-mRNA-1
tig0022499	exon	26468	26507	26468	ID=Msa1401030-mRNA-1:exon:18147;Parent=Msa1401030-mRNA-1
tig0022499	exon	26624	26700	26624	ID=Msa1401030-mRNA-1:exon:18146;Parent=Msa1401030-mRNA-1
tig0022499	exon	26788	26959	26788	ID=Msa1401030-mRNA-1:exon:18145;Parent=Msa1401030-mRNA-1
tig0022499	exon	27309	27893	27309	ID=Msa1401030-mRNA-1:exon:18144;Parent=Msa1401030-mRNA-1
tig0022499	exon	28842	29023	28842	ID=Msa1401030-mRNA-1:exon:18143;Parent=Msa1401030-mRNA-1
tig0022499	exon	30308	30626	30308	ID=Msa1401030-mRNA-1:exon:18142;Parent=Msa1401030-mRNA-1
tig0022499	five_prime_UTR	30308	30626	30308	ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499	five_prime_UTR	28842	29023	28842	ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499	five_prime_UTR	27858	27893	27858	ID=Msa1401030-mRNA-1:five_prime_utr;Parent=Msa1401030-mRNA-1
tig0022499	CDS	27309	27857	27309	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499	CDS	26788	26959	26788	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499	CDS	26624	26700	26624	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499	CDS	26468	26507	26468	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499	CDS	25609	25666	25609	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1
tig0022499	CDS	25024	25516	25024	ID=Msa1401030-mRNA-1:cds;Parent=Msa1401030-mRNA-1

Gene Sequence

>Msa1401030

ATGCCTTCTTCGTCTTCACCTGTTCTTCCCAGTCTTATGGAAAGCAATTATATGAAACCCCCGGATTCTTTTCATCGTTCACCTGTCAGGGGTCTGACAGCAAATCCTGCCTCATTGCAAGCTACATCATCGTATCCGATCAGAAGTGTTCGACCTGTGTTTTCAACCAATGATGAATGTCCTGGCGGCGTCCCTTTTCCTCCCGTTTCACAGCATGATAGGCAATATCAAGATTCTCCCTTCGCTTCTCAGGCATTAGGTGACAATGTGTCTTCGGAAATCCACTCAGCAACATTCACTTCTCACCTTCAAGAAAATGATGATATATCGTGGGGACCAGATCCATTGCCAGATATTCTTGGTTTTCCTGAAATTTTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGAAGACAATGTCAAAAAAACTGATTTTGGGGAGTGGGTTGAACAACTAATGACAAGTGATGATTCTGTTAATCCAAATTGGAGTCAGCTTCTTGGTGATGACAATGTTGTTGAACCAACACAACAGGCGATGCAGGTTTCTCAGAAGCAGCATACACCATCTGGAGAAGTCAACAATCTTTGTAATCCAGCTTCAGCATCAGCATCAACTGCTTCTCAAACTAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAAGCTTTTGTGGAAGCAGTCAACCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAAGGTGTCTTGAATCTAATGAATGTTGAGGGCCTTACCATCTACCATGTAAAAAGCCACCTCCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGATGAGTTCAATTGAGGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGAATCACTGAAGCATTACGGTTGCAGATGGAACTTCAGAAGCGACTTCATGAACAACTTGAGGTACATTATTGTTATTATCACCCGGAACTTCGAAGTTTTGGCATGTCTGATATTGTAATTGTTATACAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACAGATAGGTGACAACAAGAGCCCTTCCCCTTCAAATGCACCTTCTGCTGCAGTGTTGGACACGACGCCACCTTCTTCTCCGGTGGACAATTTAAAAACTTCAAAAGATGAACGGGATAAATCAGGATGTAACGCTGACATTCCTAAAGACATACCTGGAGAAAGTTCCCATGATGTAAGCAGAAAGCAAATGGCAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGTGCCTCCAACAAAACGAGCGAAGATTCAATGA

Protein sequence

>Msa1401030

MPSSSSPVLPSLMESNYMKPPDSFHRSPVRGLTANPASLQATSSYPIRSVRPVFSTNDECPGGVPFPPVSQHDRQYQDSPFASQALGDNVSSEIHSATFTSHLQENDDISWGPDPLPDILGFPEIFSVQHDQVENSACYMNEDNVKKTDFGEWVEQLMTSDDSVNPNWSQLLGDDNVVEPTQQAMQVSQKQHTPSGEVNNLCNPASASASTASQTKPRMRWSPELHEAFVEAVNQLGGSEKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKMSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEVHYCYYHPELRSFGMSDIVIVIQIQRKLQIQIENQGKHLEMMFEKQKQIGDNKSPSPSNAPSAAVLDTTPPSSPVDNLKTSKDERDKSGCNADIPKDIPGESSHDVSRKQMADEAEVTNEHERVDDQFSDVPPTKRAKIQ*