Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402290 | XP_003605381.1 | 97.495 | 479 | 12 | 0 | 1 | 479 | 33 | 511 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402290 | sp|Q9SA38|OCT3_ARATH | 49.688 | 481 | 236 | 3 | 2 | 476 | 29 | 509 | 1.15e-175 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402290 | B7FM11 | 97.495 | 479 | 12 | 0 | 1 | 479 | 33 | 511 | 0.0 | 956 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672990 | Msa1402290 | 0.959533 | 1.511850e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402290 | MtrunA17_Chr4g0013591 | 97.495 | 479 | 12 | 0 | 1 | 479 | 33 | 511 | 0.0 | 956 |
| Msa1402290 | MtrunA17_Chr4g0013581 | 85.177 | 479 | 70 | 1 | 1 | 478 | 27 | 505 | 0.0 | 844 |
| Msa1402290 | MtrunA17_Chr8g0353161 | 73.597 | 481 | 122 | 2 | 1 | 477 | 29 | 508 | 0.0 | 728 |
| Msa1402290 | MtrunA17_Chr8g0353141 | 73.196 | 485 | 125 | 2 | 1 | 481 | 29 | 512 | 0.0 | 726 |
| Msa1402290 | MtrunA17_Chr5g0435421 | 70.348 | 489 | 137 | 2 | 1 | 481 | 27 | 515 | 0.0 | 684 |
| Msa1402290 | MtrunA17_Chr5g0437201 | 70.040 | 494 | 131 | 3 | 1 | 477 | 29 | 522 | 0.0 | 683 |
| Msa1402290 | MtrunA17_Chr8g0356471 | 47.561 | 492 | 245 | 5 | 2 | 481 | 32 | 522 | 2.03e-168 | 485 |
| Msa1402290 | MtrunA17_Chr2g0319001 | 32.591 | 494 | 308 | 7 | 1 | 474 | 35 | 523 | 5.12e-78 | 253 |
| Msa1402290 | MtrunA17_Chr4g0067801 | 48.387 | 217 | 111 | 1 | 128 | 344 | 1 | 216 | 1.73e-67 | 216 |
| Msa1402290 | MtrunA17_Chr4g0042131 | 31.217 | 378 | 246 | 7 | 110 | 478 | 47 | 419 | 8.50e-47 | 167 |
| Msa1402290 | MtrunA17_Chr2g0319011 | 31.646 | 316 | 181 | 9 | 179 | 469 | 3 | 308 | 2.26e-30 | 120 |
| Msa1402290 | MtrunA17_Chr2g0319021 | 34.579 | 107 | 70 | 0 | 1 | 107 | 34 | 140 | 2.50e-19 | 84.7 |
| Msa1402290 | MtrunA17_Chr4g0042121 | 31.776 | 107 | 69 | 2 | 1 | 103 | 38 | 144 | 1.38e-14 | 70.9 |
| Msa1402290 | MtrunA17_Chr3g0144261 | 28.387 | 155 | 108 | 1 | 115 | 266 | 68 | 222 | 1.16e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402290 | AT1G16390.1 | 49.688 | 481 | 236 | 3 | 2 | 476 | 29 | 509 | 1.16e-176 | 506 |
| Msa1402290 | AT1G79360.1 | 47.976 | 494 | 241 | 6 | 2 | 479 | 24 | 517 | 4.44e-173 | 497 |
| Msa1402290 | AT1G79410.1 | 45.248 | 484 | 259 | 6 | 1 | 480 | 28 | 509 | 1.94e-145 | 426 |
| Msa1402290 | AT1G16370.1 | 43.983 | 482 | 265 | 5 | 1 | 478 | 33 | 513 | 2.04e-143 | 421 |
| Msa1402290 | AT1G73220.1 | 37.910 | 488 | 288 | 5 | 1 | 478 | 48 | 530 | 1.04e-107 | 330 |
| Msa1402290 | AT3G20660.1 | 31.753 | 485 | 302 | 10 | 1 | 470 | 37 | 507 | 1.55e-71 | 236 |
| Msa1402290 | AT3G51490.3 | 29.545 | 176 | 110 | 3 | 101 | 266 | 3 | 174 | 2.27e-13 | 73.2 |
| Msa1402290 | AT3G51490.1 | 29.545 | 176 | 110 | 3 | 101 | 266 | 53 | 224 | 2.52e-13 | 72.8 |
| Msa1402290 | AT3G51490.2 | 29.545 | 176 | 110 | 3 | 101 | 266 | 53 | 224 | 2.58e-13 | 72.8 |
| Msa1402290 | AT1G20840.2 | 28.931 | 159 | 102 | 2 | 115 | 266 | 68 | 222 | 8.91e-12 | 68.2 |
| Msa1402290 | AT1G20840.1 | 28.931 | 159 | 102 | 2 | 115 | 266 | 68 | 222 | 8.91e-12 | 68.2 |
Find 78 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATGACCATGAAGATTT+TGG | 0.105653 | tig0022816:+32600 | None:intergenic |
| GGAATTGGAATGGTTTATTT+TGG | 0.195131 | tig0022816:-31874 | Msa1402290:CDS |
| GTCTTCTCTTATGGTGTGTT+TGG | 0.237738 | tig0022816:-31469 | Msa1402290:CDS |
| GAAGCAATTGCAATGCTTAA+AGG | 0.243155 | tig0022816:-32057 | Msa1402290:CDS |
| TTCTTCATAGGTTGCCTAAT+TGG | 0.243229 | tig0022816:-32495 | Msa1402290:CDS |
| TCAAATTCCTTATCGGATTC+TGG | 0.249785 | tig0022816:-32341 | Msa1402290:CDS |
| TCTTCTCTTATGGTGTGTTT+GGG | 0.261634 | tig0022816:-31468 | Msa1402290:CDS |
| TAAGCATTGCAATTGCTTCT+TGG | 0.272991 | tig0022816:+32061 | None:intergenic |
| TTGTGTCGCTACTTATTTCT+TGG | 0.296187 | tig0022816:-31773 | Msa1402290:CDS |
| CCACAATCTTCATTCTTCAT+AGG | 0.305982 | tig0022816:-32507 | Msa1402290:CDS |
| GAGAGGAGTTTAGGAACATT+TGG | 0.321972 | tig0022816:-32774 | Msa1402290:CDS |
| GAAATGATAGAGAGGAGTTT+AGG | 0.326647 | tig0022816:-32783 | Msa1402290:CDS |
| TCGGCTTTCAAATTCCTTAT+CGG | 0.326745 | tig0022816:-32348 | Msa1402290:CDS |
| ATGGTTCTTGGTATTGGAAT+TGG | 0.344101 | tig0022816:-31889 | Msa1402290:CDS |
| GCAAAATCCCAAAATCTTCA+TGG | 0.345391 | tig0022816:-32608 | Msa1402290:CDS |
| GCCTTTAGCAGTTGGGAACT+TGG | 0.358113 | tig0022816:-31848 | Msa1402290:CDS |
| TGTGTTATGTGTGTTGTTGT+TGG | 0.359401 | tig0022816:-31694 | Msa1402290:CDS |
| ACAAGCTCTTTGTGATACTA+TGG | 0.364002 | tig0022816:-31392 | Msa1402290:CDS |
| CTTGGGGTTCGACATTTACT+TGG | 0.365746 | tig0022816:-31830 | Msa1402290:CDS |
| CCTTTAGCAGTTGGGAACTT+GGG | 0.373404 | tig0022816:-31847 | Msa1402290:CDS |
| GCTATAATTTACTCAATCAT+TGG | 0.374272 | tig0022816:-32135 | Msa1402290:CDS |
| ATGTGTGTTGTTGTTGGATC+AGG | 0.394930 | tig0022816:-31688 | Msa1402290:CDS |
| GCAATGATGGTTCTTGGTAT+TGG | 0.397888 | tig0022816:-31895 | Msa1402290:CDS |
| GTCGTGTTCCTCACACTTGT+CGG | 0.398211 | tig0022816:+31571 | None:intergenic |
| GAAAAGAATGGTTGCAATGA+TGG | 0.411878 | tig0022816:-31908 | Msa1402290:CDS |
| CAAAGTTGTTTGAGAGAAGC+TGG | 0.418033 | tig0022816:-31936 | Msa1402290:CDS |
| ATGGTTGCAATGATGGTTCT+TGG | 0.423914 | tig0022816:-31901 | Msa1402290:CDS |
| CGTTGTGTTTAATGCCTTGA+TGG | 0.428301 | tig0022816:-31806 | Msa1402290:CDS |
| ATTGAAAATGCAAGAATTGA+CGG | 0.431608 | tig0022816:+31733 | None:intergenic |
| GGAGTACAAGGAATCAAAGT+TGG | 0.436137 | tig0022816:-31667 | Msa1402290:CDS |
| TCCCAAAATCTTCATGGTCA+TGG | 0.441703 | tig0022816:-32602 | Msa1402290:CDS |
| CTAATGCAAAAGAACCAATT+AGG | 0.442316 | tig0022816:+32481 | None:intergenic |
| TTGGTATGCCTTTAGCAGTT+GGG | 0.447418 | tig0022816:-31855 | Msa1402290:CDS |
| GGATTCTGGCGTTCGTCTAT+CGG | 0.451034 | tig0022816:-32327 | Msa1402290:CDS |
| CTTGCTTTGCCAGAGACTAA+AGG | 0.464667 | tig0022816:-31415 | Msa1402290:CDS |
| AGAGCTTGTCCTTTAGTCTC+TGG | 0.466490 | tig0022816:+31406 | None:intergenic |
| GGAGTTTAGGAACATTTGGA+TGG | 0.472134 | tig0022816:-32770 | Msa1402290:CDS |
| CCCAAGTTCCCAACTGCTAA+AGG | 0.474326 | tig0022816:+31847 | None:intergenic |
| CCCAAAATCTTCATGGTCAT+GGG | 0.481349 | tig0022816:-32601 | Msa1402290:CDS |
| ACTTTAGCTGATACATCCCT+TGG | 0.481619 | tig0022816:-32456 | Msa1402290:CDS |
| ATGATTGAGTAAATTATAGC+TGG | 0.481999 | tig0022816:+32138 | None:intergenic |
| CTTTAGCAGTTGGGAACTTG+GGG | 0.506109 | tig0022816:-31846 | Msa1402290:CDS |
| TTTGGTATGCCTTTAGCAGT+TGG | 0.508996 | tig0022816:-31856 | Msa1402290:CDS |
| TCTTGGTATTGGAATTGGAA+TGG | 0.520997 | tig0022816:-31884 | Msa1402290:CDS |
| GTTGTTGGATCAGGAGTACA+AGG | 0.526318 | tig0022816:-31679 | Msa1402290:CDS |
| GAGTTTAGGAACATTTGGAT+GGG | 0.530584 | tig0022816:-32769 | Msa1402290:CDS |
| CCTTGCATTAGAAGCCACCT+TGG | 0.540142 | tig0022816:+32090 | None:intergenic |
| GAGTACAAGGAATCAAAGTT+GGG | 0.541950 | tig0022816:-31666 | Msa1402290:CDS |
| AACCAATGTTTGGATTTACT+CGG | 0.542219 | tig0022816:-32367 | Msa1402290:CDS |
| TCTTTGTTACTGAGTCTCCA+AGG | 0.543866 | tig0022816:-32107 | Msa1402290:CDS |
| CTTCTCTTATGGTGTGTTTG+GGG | 0.558622 | tig0022816:-31467 | Msa1402290:CDS |
| AAGCTGGGCTTTGAAAAGAA+TGG | 0.558840 | tig0022816:-31920 | Msa1402290:CDS |
| AAATAAGTAGCGACACAAGA+TGG | 0.560494 | tig0022816:+31778 | None:intergenic |
| AATCTGTGCAATGCCATGTT+GGG | 0.563621 | tig0022816:+32661 | None:intergenic |
| AAAGTTGTTTGAGAGAAGCT+GGG | 0.565151 | tig0022816:-31935 | Msa1402290:CDS |
| ACAAGGAATCAAAGTTGGGT+TGG | 0.576373 | tig0022816:-31662 | Msa1402290:CDS |
| GAATCTGTGCAATGCCATGT+TGG | 0.577316 | tig0022816:+32660 | None:intergenic |
| TGAAAACACAATGATGATTG+AGG | 0.578552 | tig0022816:+32389 | None:intergenic |
| ACAAGATGGTATTTCCATCA+AGG | 0.583132 | tig0022816:+31792 | None:intergenic |
| AAATCTTCATGGTCATGGGA+TGG | 0.583642 | tig0022816:-32597 | Msa1402290:CDS |
| ACGAACGCCAGAATCCGATA+AGG | 0.591447 | tig0022816:+32334 | None:intergenic |
| TGCATTTAGCAACAAACTCG+CGG | 0.597000 | tig0022816:+32005 | None:intergenic |
| TGTGCAAGTAGCTTCATCAC+AGG | 0.598967 | tig0022816:-32534 | Msa1402290:CDS |
| ACCGAGTGGAGGTTCACCGT+TGG | 0.604662 | tig0022816:-32267 | Msa1402290:CDS |
| AGCCGAGTAAATCCAAACAT+TGG | 0.608114 | tig0022816:+32365 | None:intergenic |
| CATCAGATGAAATGATAGAG+AGG | 0.609645 | tig0022816:-32791 | None:intergenic |
| TTAGGGTACATGTCATTACC+TGG | 0.614178 | tig0022816:-32219 | Msa1402290:CDS |
| GAGGAACACGACAACGTCGT+TGG | 0.615116 | tig0022816:-31560 | Msa1402290:CDS |
| AAAATATTCAACAATTCCAA+CGG | 0.619929 | tig0022816:+32251 | None:intergenic |
| CCAAGGTGGCTTCTAATGCA+AGG | 0.624152 | tig0022816:-32090 | Msa1402290:CDS |
| AATGCTTAAAGGAATGAGCT+CGG | 0.634915 | tig0022816:-32046 | Msa1402290:CDS |
| AGTTGTTTCCGACAAGTGTG+AGG | 0.640373 | tig0022816:-31579 | Msa1402290:CDS |
| ACACCGACGATTACCCAACA+TGG | 0.652539 | tig0022816:-32674 | Msa1402290:CDS |
| TCCAACGGTGAACCTCCACT+CGG | 0.659472 | tig0022816:+32266 | None:intergenic |
| CCTATGAAGAATGAAGATTG+TGG | 0.667133 | tig0022816:+32507 | None:intergenic |
| TTGTTACTGAGTCTCCAAGG+TGG | 0.676486 | tig0022816:-32104 | Msa1402290:CDS |
| ATGCCATGTTGGGTAATCGT+CGG | 0.699036 | tig0022816:+32671 | None:intergenic |
| CATCAAGGCATTAAACACAA+CGG | 0.710182 | tig0022816:+31807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAATCATATCTCAA+TGG | - | tig0022816:31565-31584 | Msa1402290:CDS | 20.0% |
| !! | AAAATATTCAACAATTCCAA+CGG | + | tig0022816:31883-31902 | None:intergenic | 20.0% |
| !!! | AATATTTTTGCTTCACATTA+GGG | - | tig0022816:31895-31914 | Msa1402290:CDS | 20.0% |
| !! | AAAAAACAATCATATCTCAA+TGG | - | tig0022816:31565-31584 | Msa1402290:CDS | 20.0% |
| !! | AAAATATTCAACAATTCCAA+CGG | + | tig0022816:31883-31902 | None:intergenic | 20.0% |
| !!! | AATATTTTTGCTTCACATTA+GGG | - | tig0022816:31895-31914 | Msa1402290:CDS | 20.0% |
| !!! | GATATGATTGTTTTTTGTGA+TGG | + | tig0022816:31561-31580 | None:intergenic | 25.0% |
| !!! | ATGTGTTCTTGTTTTGTTAA+CGG | - | tig0022816:31830-31849 | Msa1402290:CDS | 25.0% |
| !!! | GAATATTTTTGCTTCACATT+AGG | - | tig0022816:31894-31913 | Msa1402290:CDS | 25.0% |
| ! | ATGATTGAGTAAATTATAGC+TGG | + | tig0022816:31996-32015 | None:intergenic | 25.0% |
| ! | GCTATAATTTACTCAATCAT+TGG | - | tig0022816:31996-32015 | Msa1402290:CDS | 25.0% |
| ! | ATTGAAAATGCAAGAATTGA+CGG | + | tig0022816:32401-32420 | None:intergenic | 25.0% |
| ! | AAAAATGATGTCTTCTCTTA+TGG | - | tig0022816:32653-32672 | Msa1402290:CDS | 25.0% |
| !!! | GATATGATTGTTTTTTGTGA+TGG | + | tig0022816:31561-31580 | None:intergenic | 25.0% |
| !!! | ATGTGTTCTTGTTTTGTTAA+CGG | - | tig0022816:31830-31849 | Msa1402290:CDS | 25.0% |
| !!! | GAATATTTTTGCTTCACATT+AGG | - | tig0022816:31894-31913 | Msa1402290:CDS | 25.0% |
| ! | ATGATTGAGTAAATTATAGC+TGG | + | tig0022816:31996-32015 | None:intergenic | 25.0% |
| ! | GCTATAATTTACTCAATCAT+TGG | - | tig0022816:31996-32015 | Msa1402290:CDS | 25.0% |
| ! | ATTGAAAATGCAAGAATTGA+CGG | + | tig0022816:32401-32420 | None:intergenic | 25.0% |
| ! | AAAAATGATGTCTTCTCTTA+TGG | - | tig0022816:32653-32672 | Msa1402290:CDS | 25.0% |
| CTAATGCAAAAGAACCAATT+AGG | + | tig0022816:31653-31672 | None:intergenic | 30.0% | |
| !!! | CAACATGTTTTTTCTTCCAA+GGG | + | tig0022816:31694-31713 | None:intergenic | 30.0% |
| !!! | TCAACATGTTTTTTCTTCCA+AGG | + | tig0022816:31695-31714 | None:intergenic | 30.0% |
| TGAAAACACAATGATGATTG+AGG | + | tig0022816:31745-31764 | None:intergenic | 30.0% | |
| ! | TTGTGTTTTCAACCAATGTT+TGG | - | tig0022816:31754-31773 | Msa1402290:CDS | 30.0% |
| AACCAATGTTTGGATTTACT+CGG | - | tig0022816:31764-31783 | Msa1402290:CDS | 30.0% | |
| !! | ATGTTTTTCGATTTTCATCG+TGG | - | tig0022816:31943-31962 | Msa1402290:CDS | 30.0% |
| CGTGGAAAAATGTTTACATT+TGG | - | tig0022816:31961-31980 | Msa1402290:CDS | 30.0% | |
| ! | GGAATTGGAATGGTTTATTT+TGG | - | tig0022816:32257-32276 | Msa1402290:CDS | 30.0% |
| !!! | ATCGTTTTTTAGTGCTACTA+CGG | - | tig0022816:32499-32518 | Msa1402290:CDS | 30.0% |
| CTAATGCAAAAGAACCAATT+AGG | + | tig0022816:31653-31672 | None:intergenic | 30.0% | |
| !!! | CAACATGTTTTTTCTTCCAA+GGG | + | tig0022816:31694-31713 | None:intergenic | 30.0% |
| !!! | TCAACATGTTTTTTCTTCCA+AGG | + | tig0022816:31695-31714 | None:intergenic | 30.0% |
| TGAAAACACAATGATGATTG+AGG | + | tig0022816:31745-31764 | None:intergenic | 30.0% | |
| ! | TTGTGTTTTCAACCAATGTT+TGG | - | tig0022816:31754-31773 | Msa1402290:CDS | 30.0% |
| AACCAATGTTTGGATTTACT+CGG | - | tig0022816:31764-31783 | Msa1402290:CDS | 30.0% | |
| !! | ATGTTTTTCGATTTTCATCG+TGG | - | tig0022816:31943-31962 | Msa1402290:CDS | 30.0% |
| CGTGGAAAAATGTTTACATT+TGG | - | tig0022816:31961-31980 | Msa1402290:CDS | 30.0% | |
| ! | GGAATTGGAATGGTTTATTT+TGG | - | tig0022816:32257-32276 | Msa1402290:CDS | 30.0% |
| !!! | ATCGTTTTTTAGTGCTACTA+CGG | - | tig0022816:32499-32518 | Msa1402290:CDS | 30.0% |
| GAGTTTAGGAACATTTGGAT+GGG | - | tig0022816:31362-31381 | Msa1402290:CDS | 35.0% | |
| GCAAAATCCCAAAATCTTCA+TGG | - | tig0022816:31523-31542 | Msa1402290:CDS | 35.0% | |
| CCTATGAAGAATGAAGATTG+TGG | + | tig0022816:31627-31646 | None:intergenic | 35.0% | |
| CCACAATCTTCATTCTTCAT+AGG | - | tig0022816:31624-31643 | Msa1402290:CDS | 35.0% | |
| TTCTTCATAGGTTGCCTAAT+TGG | - | tig0022816:31636-31655 | Msa1402290:CDS | 35.0% | |
| TCGGCTTTCAAATTCCTTAT+CGG | - | tig0022816:31783-31802 | Msa1402290:CDS | 35.0% | |
| TCAAATTCCTTATCGGATTC+TGG | - | tig0022816:31790-31809 | Msa1402290:CDS | 35.0% | |
| ! | TAAGCATTGCAATTGCTTCT+TGG | + | tig0022816:32073-32092 | None:intergenic | 35.0% |
| GAAGCAATTGCAATGCTTAA+AGG | - | tig0022816:32074-32093 | Msa1402290:CDS | 35.0% | |
| AATGCTTAAAGGAATGAGCT+CGG | - | tig0022816:32085-32104 | Msa1402290:CDS | 35.0% | |
| !! | AAACCGAAGCCTTTTGTTTA+GGG | + | tig0022816:32154-32173 | None:intergenic | 35.0% |
| !! | AAAACCGAAGCCTTTTGTTT+AGG | + | tig0022816:32155-32174 | None:intergenic | 35.0% |
| AAAGTTGTTTGAGAGAAGCT+GGG | - | tig0022816:32196-32215 | Msa1402290:CDS | 35.0% | |
| GAAAAGAATGGTTGCAATGA+TGG | - | tig0022816:32223-32242 | Msa1402290:CDS | 35.0% | |
| ! | ATGGTTCTTGGTATTGGAAT+TGG | - | tig0022816:32242-32261 | Msa1402290:CDS | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | tig0022816:32247-32266 | Msa1402290:CDS | 35.0% |
| ! | CATCAAGGCATTAAACACAA+CGG | + | tig0022816:32327-32346 | None:intergenic | 35.0% |
| ACAAGATGGTATTTCCATCA+AGG | + | tig0022816:32342-32361 | None:intergenic | 35.0% | |
| AAATAAGTAGCGACACAAGA+TGG | + | tig0022816:32356-32375 | None:intergenic | 35.0% | |
| ! | TTGTGTCGCTACTTATTTCT+TGG | - | tig0022816:32358-32377 | Msa1402290:CDS | 35.0% |
| ! | TGTGTTATGTGTGTTGTTGT+TGG | - | tig0022816:32437-32456 | Msa1402290:CDS | 35.0% |
| GAGTACAAGGAATCAAAGTT+GGG | - | tig0022816:32465-32484 | Msa1402290:CDS | 35.0% | |
| ! | GTGAGACAAGCTATTGTTTT+CGG | - | tig0022816:32593-32612 | Msa1402290:CDS | 35.0% |
| !!! | AGTCCTTTTTTGATATCTGC+TGG | - | tig0022816:32626-32645 | Msa1402290:CDS | 35.0% |
| !!! | GTCCTTTTTTGATATCTGCT+GGG | - | tig0022816:32627-32646 | Msa1402290:CDS | 35.0% |
| TCTTCTCTTATGGTGTGTTT+GGG | - | tig0022816:32663-32682 | Msa1402290:CDS | 35.0% | |
| ACAAGCTCTTTGTGATACTA+TGG | - | tig0022816:32739-32758 | Msa1402290:CDS | 35.0% | |
| GAGTTTAGGAACATTTGGAT+GGG | - | tig0022816:31362-31381 | Msa1402290:CDS | 35.0% | |
| GCAAAATCCCAAAATCTTCA+TGG | - | tig0022816:31523-31542 | Msa1402290:CDS | 35.0% | |
| CCTATGAAGAATGAAGATTG+TGG | + | tig0022816:31627-31646 | None:intergenic | 35.0% | |
| CCACAATCTTCATTCTTCAT+AGG | - | tig0022816:31624-31643 | Msa1402290:CDS | 35.0% | |
| TTCTTCATAGGTTGCCTAAT+TGG | - | tig0022816:31636-31655 | Msa1402290:CDS | 35.0% | |
| TCGGCTTTCAAATTCCTTAT+CGG | - | tig0022816:31783-31802 | Msa1402290:CDS | 35.0% | |
| TCAAATTCCTTATCGGATTC+TGG | - | tig0022816:31790-31809 | Msa1402290:CDS | 35.0% | |
| ! | TAAGCATTGCAATTGCTTCT+TGG | + | tig0022816:32073-32092 | None:intergenic | 35.0% |
| GAAGCAATTGCAATGCTTAA+AGG | - | tig0022816:32074-32093 | Msa1402290:CDS | 35.0% | |
| AATGCTTAAAGGAATGAGCT+CGG | - | tig0022816:32085-32104 | Msa1402290:CDS | 35.0% | |
| !! | AAACCGAAGCCTTTTGTTTA+GGG | + | tig0022816:32154-32173 | None:intergenic | 35.0% |
| !! | AAAACCGAAGCCTTTTGTTT+AGG | + | tig0022816:32155-32174 | None:intergenic | 35.0% |
| AAAGTTGTTTGAGAGAAGCT+GGG | - | tig0022816:32196-32215 | Msa1402290:CDS | 35.0% | |
| GAAAAGAATGGTTGCAATGA+TGG | - | tig0022816:32223-32242 | Msa1402290:CDS | 35.0% | |
| ! | ATGGTTCTTGGTATTGGAAT+TGG | - | tig0022816:32242-32261 | Msa1402290:CDS | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | tig0022816:32247-32266 | Msa1402290:CDS | 35.0% |
| ! | CATCAAGGCATTAAACACAA+CGG | + | tig0022816:32327-32346 | None:intergenic | 35.0% |
| ACAAGATGGTATTTCCATCA+AGG | + | tig0022816:32342-32361 | None:intergenic | 35.0% | |
| AAATAAGTAGCGACACAAGA+TGG | + | tig0022816:32356-32375 | None:intergenic | 35.0% | |
| ! | TTGTGTCGCTACTTATTTCT+TGG | - | tig0022816:32358-32377 | Msa1402290:CDS | 35.0% |
| ! | TGTGTTATGTGTGTTGTTGT+TGG | - | tig0022816:32437-32456 | Msa1402290:CDS | 35.0% |
| GAGTACAAGGAATCAAAGTT+GGG | - | tig0022816:32465-32484 | Msa1402290:CDS | 35.0% | |
| ! | GTGAGACAAGCTATTGTTTT+CGG | - | tig0022816:32593-32612 | Msa1402290:CDS | 35.0% |
| !!! | AGTCCTTTTTTGATATCTGC+TGG | - | tig0022816:32626-32645 | Msa1402290:CDS | 35.0% |
| !!! | GTCCTTTTTTGATATCTGCT+GGG | - | tig0022816:32627-32646 | Msa1402290:CDS | 35.0% |
| TCTTCTCTTATGGTGTGTTT+GGG | - | tig0022816:32663-32682 | Msa1402290:CDS | 35.0% | |
| ACAAGCTCTTTGTGATACTA+TGG | - | tig0022816:32739-32758 | Msa1402290:CDS | 35.0% | |
| GAGAGGAGTTTAGGAACATT+TGG | - | tig0022816:31357-31376 | Msa1402290:CDS | 40.0% | |
| GGAGTTTAGGAACATTTGGA+TGG | - | tig0022816:31361-31380 | Msa1402290:CDS | 40.0% | |
| AATCTGTGCAATGCCATGTT+GGG | + | tig0022816:31473-31492 | None:intergenic | 40.0% | |
| TCCCAAAATCTTCATGGTCA+TGG | - | tig0022816:31529-31548 | Msa1402290:CDS | 40.0% | |
| ! | CCCATGACCATGAAGATTTT+GGG | + | tig0022816:31533-31552 | None:intergenic | 40.0% |
| CCCAAAATCTTCATGGTCAT+GGG | - | tig0022816:31530-31549 | Msa1402290:CDS | 40.0% | |
| ! | TCCCATGACCATGAAGATTT+TGG | + | tig0022816:31534-31553 | None:intergenic | 40.0% |
| AAATCTTCATGGTCATGGGA+TGG | - | tig0022816:31534-31553 | Msa1402290:CDS | 40.0% | |
| ACTTTAGCTGATACATCCCT+TGG | - | tig0022816:31675-31694 | Msa1402290:CDS | 40.0% | |
| AGCCGAGTAAATCCAAACAT+TGG | + | tig0022816:31769-31788 | None:intergenic | 40.0% | |
| ! | AAAAAGTTAGTACCGAGTGG+AGG | - | tig0022816:31853-31872 | Msa1402290:CDS | 40.0% |
| TTAGGGTACATGTCATTACC+TGG | - | tig0022816:31912-31931 | Msa1402290:CDS | 40.0% | |
| CGAAAAACATAAGCTACACC+AGG | + | tig0022816:31933-31952 | None:intergenic | 40.0% | |
| TCTTTGTTACTGAGTCTCCA+AGG | - | tig0022816:32024-32043 | Msa1402290:CDS | 40.0% | |
| TGCATTTAGCAACAAACTCG+CGG | + | tig0022816:32129-32148 | None:intergenic | 40.0% | |
| AAATGCACCCCCTAAACAAA+AGG | - | tig0022816:32142-32161 | Msa1402290:CDS | 40.0% | |
| !! | AACCGAAGCCTTTTGTTTAG+GGG | + | tig0022816:32153-32172 | None:intergenic | 40.0% |
| CAAAGTTGTTTGAGAGAAGC+TGG | - | tig0022816:32195-32214 | Msa1402290:CDS | 40.0% | |
| !! | AAGCTGGGCTTTGAAAAGAA+TGG | - | tig0022816:32211-32230 | Msa1402290:CDS | 40.0% |
| ATGGTTGCAATGATGGTTCT+TGG | - | tig0022816:32230-32249 | Msa1402290:CDS | 40.0% | |
| GCAATGATGGTTCTTGGTAT+TGG | - | tig0022816:32236-32255 | Msa1402290:CDS | 40.0% | |
| TTTGGTATGCCTTTAGCAGT+TGG | - | tig0022816:32275-32294 | Msa1402290:CDS | 40.0% | |
| TTGGTATGCCTTTAGCAGTT+GGG | - | tig0022816:32276-32295 | Msa1402290:CDS | 40.0% | |
| CGTTGTGTTTAATGCCTTGA+TGG | - | tig0022816:32325-32344 | Msa1402290:CDS | 40.0% | |
| ! | CTTGCATTTTCAATAGCGAG+TGG | - | tig0022816:32407-32426 | Msa1402290:CDS | 40.0% |
| ! | ATGTGTGTTGTTGTTGGATC+AGG | - | tig0022816:32443-32462 | Msa1402290:CDS | 40.0% |
| GGAGTACAAGGAATCAAAGT+TGG | - | tig0022816:32464-32483 | Msa1402290:CDS | 40.0% | |
| ACAAGGAATCAAAGTTGGGT+TGG | - | tig0022816:32469-32488 | Msa1402290:CDS | 40.0% | |
| CTCCCAGCAGATATCAAAAA+AGG | + | tig0022816:32632-32651 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGATATCTGCTGGG+AGG | - | tig0022816:32630-32649 | Msa1402290:CDS | 40.0% |
| GTCTTCTCTTATGGTGTGTT+TGG | - | tig0022816:32662-32681 | Msa1402290:CDS | 40.0% | |
| CTTCTCTTATGGTGTGTTTG+GGG | - | tig0022816:32664-32683 | Msa1402290:CDS | 40.0% | |
| GAGAGGAGTTTAGGAACATT+TGG | - | tig0022816:31357-31376 | Msa1402290:CDS | 40.0% | |
| GGAGTTTAGGAACATTTGGA+TGG | - | tig0022816:31361-31380 | Msa1402290:CDS | 40.0% | |
| AATCTGTGCAATGCCATGTT+GGG | + | tig0022816:31473-31492 | None:intergenic | 40.0% | |
| TCCCAAAATCTTCATGGTCA+TGG | - | tig0022816:31529-31548 | Msa1402290:CDS | 40.0% | |
| ! | CCCATGACCATGAAGATTTT+GGG | + | tig0022816:31533-31552 | None:intergenic | 40.0% |
| CCCAAAATCTTCATGGTCAT+GGG | - | tig0022816:31530-31549 | Msa1402290:CDS | 40.0% | |
| ! | TCCCATGACCATGAAGATTT+TGG | + | tig0022816:31534-31553 | None:intergenic | 40.0% |
| AAATCTTCATGGTCATGGGA+TGG | - | tig0022816:31534-31553 | Msa1402290:CDS | 40.0% | |
| ACTTTAGCTGATACATCCCT+TGG | - | tig0022816:31675-31694 | Msa1402290:CDS | 40.0% | |
| AGCCGAGTAAATCCAAACAT+TGG | + | tig0022816:31769-31788 | None:intergenic | 40.0% | |
| ! | AAAAAGTTAGTACCGAGTGG+AGG | - | tig0022816:31853-31872 | Msa1402290:CDS | 40.0% |
| TTAGGGTACATGTCATTACC+TGG | - | tig0022816:31912-31931 | Msa1402290:CDS | 40.0% | |
| CGAAAAACATAAGCTACACC+AGG | + | tig0022816:31933-31952 | None:intergenic | 40.0% | |
| TCTTTGTTACTGAGTCTCCA+AGG | - | tig0022816:32024-32043 | Msa1402290:CDS | 40.0% | |
| TGCATTTAGCAACAAACTCG+CGG | + | tig0022816:32129-32148 | None:intergenic | 40.0% | |
| AAATGCACCCCCTAAACAAA+AGG | - | tig0022816:32142-32161 | Msa1402290:CDS | 40.0% | |
| !! | AACCGAAGCCTTTTGTTTAG+GGG | + | tig0022816:32153-32172 | None:intergenic | 40.0% |
| CAAAGTTGTTTGAGAGAAGC+TGG | - | tig0022816:32195-32214 | Msa1402290:CDS | 40.0% | |
| !! | AAGCTGGGCTTTGAAAAGAA+TGG | - | tig0022816:32211-32230 | Msa1402290:CDS | 40.0% |
| ATGGTTGCAATGATGGTTCT+TGG | - | tig0022816:32230-32249 | Msa1402290:CDS | 40.0% | |
| GCAATGATGGTTCTTGGTAT+TGG | - | tig0022816:32236-32255 | Msa1402290:CDS | 40.0% | |
| TTTGGTATGCCTTTAGCAGT+TGG | - | tig0022816:32275-32294 | Msa1402290:CDS | 40.0% | |
| TTGGTATGCCTTTAGCAGTT+GGG | - | tig0022816:32276-32295 | Msa1402290:CDS | 40.0% | |
| CGTTGTGTTTAATGCCTTGA+TGG | - | tig0022816:32325-32344 | Msa1402290:CDS | 40.0% | |
| ! | CTTGCATTTTCAATAGCGAG+TGG | - | tig0022816:32407-32426 | Msa1402290:CDS | 40.0% |
| ! | ATGTGTGTTGTTGTTGGATC+AGG | - | tig0022816:32443-32462 | Msa1402290:CDS | 40.0% |
| GGAGTACAAGGAATCAAAGT+TGG | - | tig0022816:32464-32483 | Msa1402290:CDS | 40.0% | |
| ACAAGGAATCAAAGTTGGGT+TGG | - | tig0022816:32469-32488 | Msa1402290:CDS | 40.0% | |
| CTCCCAGCAGATATCAAAAA+AGG | + | tig0022816:32632-32651 | None:intergenic | 40.0% | |
| !!! | CTTTTTTGATATCTGCTGGG+AGG | - | tig0022816:32630-32649 | Msa1402290:CDS | 40.0% |
| GTCTTCTCTTATGGTGTGTT+TGG | - | tig0022816:32662-32681 | Msa1402290:CDS | 40.0% | |
| CTTCTCTTATGGTGTGTTTG+GGG | - | tig0022816:32664-32683 | Msa1402290:CDS | 40.0% | |
| ATGCCATGTTGGGTAATCGT+CGG | + | tig0022816:31463-31482 | None:intergenic | 45.0% | |
| GAATCTGTGCAATGCCATGT+TGG | + | tig0022816:31474-31493 | None:intergenic | 45.0% | |
| TGTGCAAGTAGCTTCATCAC+AGG | - | tig0022816:31597-31616 | Msa1402290:CDS | 45.0% | |
| ! | CGGAAAAAGTTAGTACCGAG+TGG | - | tig0022816:31850-31869 | Msa1402290:CDS | 45.0% |
| TTGTTACTGAGTCTCCAAGG+TGG | - | tig0022816:32027-32046 | Msa1402290:CDS | 45.0% | |
| ACCCCCTAAACAAAAGGCTT+CGG | - | tig0022816:32148-32167 | Msa1402290:CDS | 45.0% | |
| !! | ACCGAAGCCTTTTGTTTAGG+GGG | + | tig0022816:32152-32171 | None:intergenic | 45.0% |
| CCTTTAGCAGTTGGGAACTT+GGG | - | tig0022816:32284-32303 | Msa1402290:CDS | 45.0% | |
| CTTTAGCAGTTGGGAACTTG+GGG | - | tig0022816:32285-32304 | Msa1402290:CDS | 45.0% | |
| CTTGGGGTTCGACATTTACT+TGG | - | tig0022816:32301-32320 | Msa1402290:CDS | 45.0% | |
| ! | GTTGTTGGATCAGGAGTACA+AGG | - | tig0022816:32452-32471 | Msa1402290:CDS | 45.0% |
| ! | AGTTGTTTCCGACAAGTGTG+AGG | - | tig0022816:32552-32571 | Msa1402290:CDS | 45.0% |
| CTTGCTTTGCCAGAGACTAA+AGG | - | tig0022816:32716-32735 | Msa1402290:CDS | 45.0% | |
| AGAGCTTGTCCTTTAGTCTC+TGG | + | tig0022816:32728-32747 | None:intergenic | 45.0% | |
| ATGCCATGTTGGGTAATCGT+CGG | + | tig0022816:31463-31482 | None:intergenic | 45.0% | |
| GAATCTGTGCAATGCCATGT+TGG | + | tig0022816:31474-31493 | None:intergenic | 45.0% | |
| TGTGCAAGTAGCTTCATCAC+AGG | - | tig0022816:31597-31616 | Msa1402290:CDS | 45.0% | |
| ! | CGGAAAAAGTTAGTACCGAG+TGG | - | tig0022816:31850-31869 | Msa1402290:CDS | 45.0% |
| TTGTTACTGAGTCTCCAAGG+TGG | - | tig0022816:32027-32046 | Msa1402290:CDS | 45.0% | |
| ACCCCCTAAACAAAAGGCTT+CGG | - | tig0022816:32148-32167 | Msa1402290:CDS | 45.0% | |
| !! | ACCGAAGCCTTTTGTTTAGG+GGG | + | tig0022816:32152-32171 | None:intergenic | 45.0% |
| CCTTTAGCAGTTGGGAACTT+GGG | - | tig0022816:32284-32303 | Msa1402290:CDS | 45.0% | |
| CTTTAGCAGTTGGGAACTTG+GGG | - | tig0022816:32285-32304 | Msa1402290:CDS | 45.0% | |
| CTTGGGGTTCGACATTTACT+TGG | - | tig0022816:32301-32320 | Msa1402290:CDS | 45.0% | |
| ! | GTTGTTGGATCAGGAGTACA+AGG | - | tig0022816:32452-32471 | Msa1402290:CDS | 45.0% |
| ! | AGTTGTTTCCGACAAGTGTG+AGG | - | tig0022816:32552-32571 | Msa1402290:CDS | 45.0% |
| CTTGCTTTGCCAGAGACTAA+AGG | - | tig0022816:32716-32735 | Msa1402290:CDS | 45.0% | |
| AGAGCTTGTCCTTTAGTCTC+TGG | + | tig0022816:32728-32747 | None:intergenic | 45.0% | |
| ACACCGACGATTACCCAACA+TGG | - | tig0022816:31457-31476 | Msa1402290:CDS | 50.0% | |
| ACGAACGCCAGAATCCGATA+AGG | + | tig0022816:31800-31819 | None:intergenic | 50.0% | |
| GGATTCTGGCGTTCGTCTAT+CGG | - | tig0022816:31804-31823 | Msa1402290:CDS | 50.0% | |
| CCTTGCATTAGAAGCCACCT+TGG | + | tig0022816:32044-32063 | None:intergenic | 50.0% | |
| CCAAGGTGGCTTCTAATGCA+AGG | - | tig0022816:32041-32060 | Msa1402290:CDS | 50.0% | |
| GCCTTTAGCAGTTGGGAACT+TGG | - | tig0022816:32283-32302 | Msa1402290:CDS | 50.0% | |
| CCCAAGTTCCCAACTGCTAA+AGG | + | tig0022816:32287-32306 | None:intergenic | 50.0% | |
| GTCGTGTTCCTCACACTTGT+CGG | + | tig0022816:32563-32582 | None:intergenic | 50.0% | |
| ACACCGACGATTACCCAACA+TGG | - | tig0022816:31457-31476 | Msa1402290:CDS | 50.0% | |
| ACGAACGCCAGAATCCGATA+AGG | + | tig0022816:31800-31819 | None:intergenic | 50.0% | |
| GGATTCTGGCGTTCGTCTAT+CGG | - | tig0022816:31804-31823 | Msa1402290:CDS | 50.0% | |
| CCTTGCATTAGAAGCCACCT+TGG | + | tig0022816:32044-32063 | None:intergenic | 50.0% | |
| CCAAGGTGGCTTCTAATGCA+AGG | - | tig0022816:32041-32060 | Msa1402290:CDS | 50.0% | |
| GCCTTTAGCAGTTGGGAACT+TGG | - | tig0022816:32283-32302 | Msa1402290:CDS | 50.0% | |
| CCCAAGTTCCCAACTGCTAA+AGG | + | tig0022816:32287-32306 | None:intergenic | 50.0% | |
| GTCGTGTTCCTCACACTTGT+CGG | + | tig0022816:32563-32582 | None:intergenic | 50.0% | |
| TCCAACGGTGAACCTCCACT+CGG | + | tig0022816:31868-31887 | None:intergenic | 55.0% | |
| GAGGAACACGACAACGTCGT+TGG | - | tig0022816:32571-32590 | Msa1402290:CDS | 55.0% | |
| TCCAACGGTGAACCTCCACT+CGG | + | tig0022816:31868-31887 | None:intergenic | 55.0% | |
| GAGGAACACGACAACGTCGT+TGG | - | tig0022816:32571-32590 | Msa1402290:CDS | 55.0% | |
| ACCGAGTGGAGGTTCACCGT+TGG | - | tig0022816:31864-31883 | Msa1402290:CDS | 60.0% | |
| ACCGAGTGGAGGTTCACCGT+TGG | - | tig0022816:31864-31883 | Msa1402290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022816 | gene | 31351 | 32802 | 31351 | ID=Msa1402290;Name=Msa1402290 |
| tig0022816 | mRNA | 31351 | 32802 | 31351 | ID=Msa1402290-mRNA-1;Parent=Msa1402290;Name=Msa1402290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|483 |
| tig0022816 | exon | 31351 | 32802 | 31351 | ID=Msa1402290-mRNA-1:exon:18840;Parent=Msa1402290-mRNA-1 |
| tig0022816 | CDS | 31351 | 32802 | 31351 | ID=Msa1402290-mRNA-1:cds;Parent=Msa1402290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
