Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672990 | XP_003605381.1 | 97.065 | 511 | 15 | 0 | 1 | 511 | 1 | 511 | 0.0 | 1015 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672990 | sp|Q9SA38|OCT3_ARATH | 48.330 | 509 | 256 | 4 | 7 | 508 | 1 | 509 | 4.21e-178 | 513 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672990 | B7FM11 | 97.065 | 511 | 15 | 0 | 1 | 511 | 1 | 511 | 0.0 | 1015 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0672990 | Msa0702340 | 0.817652 | 2.951654e-52 | -8.615850e-47 |
Msa0672990 | Msa0702590 | 0.806848 | 6.740590e-50 | -8.615850e-47 |
Msa0672990 | Msa0702660 | 0.821977 | 3.030256e-53 | -8.615850e-47 |
Msa0672990 | Msa1224840 | 0.806109 | 9.649652e-50 | -8.615850e-47 |
Msa0672990 | Msa1402290 | 0.959533 | 1.511850e-117 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672990 | MtrunA17_Chr4g0013591 | 97.065 | 511 | 15 | 0 | 1 | 511 | 1 | 511 | 0.0 | 1015 |
Msa0672990 | MtrunA17_Chr4g0013581 | 82.745 | 510 | 81 | 2 | 1 | 509 | 1 | 504 | 0.0 | 865 |
Msa0672990 | MtrunA17_Chr8g0353161 | 72.617 | 493 | 130 | 2 | 21 | 509 | 17 | 508 | 0.0 | 734 |
Msa0672990 | MtrunA17_Chr8g0353141 | 71.514 | 502 | 138 | 2 | 16 | 513 | 12 | 512 | 0.0 | 733 |
Msa0672990 | MtrunA17_Chr5g0435421 | 68.701 | 508 | 151 | 2 | 14 | 513 | 8 | 515 | 0.0 | 695 |
Msa0672990 | MtrunA17_Chr5g0437201 | 68.164 | 512 | 144 | 4 | 17 | 509 | 11 | 522 | 0.0 | 687 |
Msa0672990 | MtrunA17_Chr8g0356471 | 45.889 | 523 | 266 | 6 | 7 | 513 | 1 | 522 | 1.52e-168 | 486 |
Msa0672990 | MtrunA17_Chr2g0319001 | 32.863 | 496 | 308 | 7 | 31 | 506 | 33 | 523 | 9.23e-80 | 258 |
Msa0672990 | MtrunA17_Chr4g0067801 | 48.165 | 218 | 112 | 1 | 160 | 377 | 1 | 217 | 3.43e-67 | 216 |
Msa0672990 | MtrunA17_Chr4g0042131 | 31.217 | 378 | 246 | 7 | 142 | 510 | 47 | 419 | 1.34e-46 | 167 |
Msa0672990 | MtrunA17_Chr2g0319011 | 31.646 | 316 | 181 | 9 | 211 | 501 | 3 | 308 | 3.83e-30 | 120 |
Msa0672990 | MtrunA17_Chr2g0319021 | 35.780 | 109 | 70 | 0 | 31 | 139 | 32 | 140 | 5.50e-21 | 89.4 |
Msa0672990 | MtrunA17_Chr4g0042121 | 33.028 | 109 | 69 | 2 | 31 | 135 | 36 | 144 | 2.21e-16 | 76.3 |
Msa0672990 | MtrunA17_Chr3g0144261 | 28.387 | 155 | 108 | 1 | 147 | 298 | 68 | 222 | 1.11e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0672990 | AT1G16390.1 | 48.330 | 509 | 256 | 4 | 7 | 508 | 1 | 509 | 4.28e-179 | 513 |
Msa0672990 | AT1G79360.1 | 47.535 | 507 | 249 | 7 | 22 | 511 | 11 | 517 | 2.51e-174 | 502 |
Msa0672990 | AT1G79410.1 | 43.836 | 511 | 280 | 7 | 7 | 512 | 1 | 509 | 7.35e-148 | 434 |
Msa0672990 | AT1G16370.1 | 41.992 | 512 | 290 | 6 | 5 | 510 | 3 | 513 | 1.65e-144 | 426 |
Msa0672990 | AT1G73220.1 | 38.163 | 490 | 288 | 5 | 31 | 510 | 46 | 530 | 1.34e-109 | 337 |
Msa0672990 | AT3G20660.1 | 32.033 | 487 | 302 | 10 | 31 | 502 | 35 | 507 | 2.33e-73 | 242 |
Msa0672990 | AT3G51490.3 | 29.545 | 176 | 110 | 3 | 133 | 298 | 3 | 174 | 1.29e-13 | 73.9 |
Msa0672990 | AT3G51490.2 | 29.545 | 176 | 110 | 3 | 133 | 298 | 53 | 224 | 1.67e-13 | 73.6 |
Msa0672990 | AT3G51490.1 | 29.545 | 176 | 110 | 3 | 133 | 298 | 53 | 224 | 1.70e-13 | 73.6 |
Msa0672990 | AT1G20840.2 | 28.931 | 159 | 102 | 2 | 147 | 298 | 68 | 222 | 7.30e-12 | 68.6 |
Msa0672990 | AT1G20840.1 | 28.931 | 159 | 102 | 2 | 147 | 298 | 68 | 222 | 7.30e-12 | 68.6 |
Find 91 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCATGACCATGAAGATTT+TGG | 0.105653 | 4_4:-18781599 | None:intergenic |
GGAATTGGAATGGTTTATTT+TGG | 0.195131 | 4_4:+18782325 | Msa0672990:CDS |
GTCTTCTCTTATGGTGTGTT+TGG | 0.237738 | 4_4:+18782730 | Msa0672990:CDS |
GAAGCAATTGCAATGCTTAA+AGG | 0.243155 | 4_4:+18782142 | Msa0672990:CDS |
TTCTTCATAGGTTGCCTAAT+TGG | 0.243229 | 4_4:+18781704 | Msa0672990:CDS |
TTTAGATAATAGAGATATTA+AGG | 0.249467 | 4_4:+18776279 | Msa0672990:five_prime_UTR |
TCAAATTCCTTATCGGATTC+TGG | 0.249785 | 4_4:+18781858 | Msa0672990:CDS |
TAATATCTCTATTATCTAAA+TGG | 0.256585 | 4_4:-18776276 | None:intergenic |
TCTTCTCTTATGGTGTGTTT+GGG | 0.261634 | 4_4:+18782731 | Msa0672990:CDS |
TAAGCATTGCAATTGCTTCT+TGG | 0.272991 | 4_4:-18782138 | None:intergenic |
TATTGTGCTTCGCAGGAAAA+AGG | 0.282742 | 4_4:+18781377 | Msa0672990:intron |
TGATTCAACATGCAGATCTA+TGG | 0.284386 | 4_4:+18776341 | Msa0672990:CDS |
AGGAATTCTCTGGTTGGATA+TGG | 0.284539 | 4_4:+18776299 | Msa0672990:exon |
TTGTGTCGCTACTTATTTCT+TGG | 0.296187 | 4_4:+18782426 | Msa0672990:CDS |
CCACAATCTTCATTCTTCAT+AGG | 0.305982 | 4_4:+18781692 | Msa0672990:CDS |
GAGAGGAGTTTAGGAACATT+TGG | 0.321972 | 4_4:+18781425 | Msa0672990:CDS |
GAAATGATAGAGAGGAGTTT+AGG | 0.326647 | 4_4:+18781416 | Msa0672990:CDS |
TCGGCTTTCAAATTCCTTAT+CGG | 0.326745 | 4_4:+18781851 | Msa0672990:CDS |
ATGGTTCTTGGTATTGGAAT+TGG | 0.344101 | 4_4:+18782310 | Msa0672990:CDS |
GCAAAATCCCAAAATCTTCA+TGG | 0.345391 | 4_4:+18781591 | Msa0672990:CDS |
GCCTTTAGCAGTTGGGAACT+TGG | 0.358113 | 4_4:+18782351 | Msa0672990:CDS |
TGTGTTATGTGTGTTGTTGT+TGG | 0.359401 | 4_4:+18782505 | Msa0672990:CDS |
AATTAAGAATGCTCAATAAA+AGG | 0.363873 | 4_4:+18776192 | Msa0672990:five_prime_UTR |
ACAAGCTCTTTGTGATACTA+TGG | 0.364002 | 4_4:+18782807 | Msa0672990:CDS |
CTTGGGGTTCGACATTTACT+TGG | 0.365746 | 4_4:+18782369 | Msa0672990:CDS |
CCTTTAGCAGTTGGGAACTT+GGG | 0.373404 | 4_4:+18782352 | Msa0672990:CDS |
GCTATAATTTACTCAATCAT+TGG | 0.374272 | 4_4:+18782064 | Msa0672990:CDS |
ATGTGTGTTGTTGTTGGATC+AGG | 0.394930 | 4_4:+18782511 | Msa0672990:CDS |
GCAATGATGGTTCTTGGTAT+TGG | 0.397888 | 4_4:+18782304 | Msa0672990:CDS |
GTCGTGTTCCTCACACTTGT+CGG | 0.398211 | 4_4:-18782628 | None:intergenic |
GAAAAGAATGGTTGCAATGA+TGG | 0.411878 | 4_4:+18782291 | Msa0672990:CDS |
CAAAGTTGTTTGAGAGAAGC+TGG | 0.418033 | 4_4:+18782263 | Msa0672990:CDS |
ATGGTTGCAATGATGGTTCT+TGG | 0.423914 | 4_4:+18782298 | Msa0672990:CDS |
CGTTGTGTTTAATGCCTTGA+TGG | 0.428301 | 4_4:+18782393 | Msa0672990:CDS |
ATTGAAAATGCAAGAATTGA+CGG | 0.431608 | 4_4:-18782466 | None:intergenic |
GGAGTACAAGGAATCAAAGT+TGG | 0.436137 | 4_4:+18782532 | Msa0672990:CDS |
TCCCAAAATCTTCATGGTCA+TGG | 0.441703 | 4_4:+18781597 | Msa0672990:CDS |
CTAATGCAAAAGAACCAATT+AGG | 0.442316 | 4_4:-18781718 | None:intergenic |
GTTGGATATGGCTTCTATTG+AGG | 0.442730 | 4_4:+18776311 | Msa0672990:exon |
TTGGTATGCCTTTAGCAGTT+GGG | 0.447418 | 4_4:+18782344 | Msa0672990:CDS |
GGATTCTGGCGTTCGTCTAT+CGG | 0.451034 | 4_4:+18781872 | Msa0672990:CDS |
AGAGATATTAAGGAATTCTC+TGG | 0.459597 | 4_4:+18776289 | Msa0672990:five_prime_UTR |
CTTGCTTTGCCAGAGACTAA+AGG | 0.464667 | 4_4:+18782784 | Msa0672990:CDS |
AGAGCTTGTCCTTTAGTCTC+TGG | 0.466490 | 4_4:-18782793 | None:intergenic |
GGAGTTTAGGAACATTTGGA+TGG | 0.472134 | 4_4:+18781429 | Msa0672990:CDS |
CCCAAGTTCCCAACTGCTAA+AGG | 0.474326 | 4_4:-18782352 | None:intergenic |
CCCAAAATCTTCATGGTCAT+GGG | 0.481349 | 4_4:+18781598 | Msa0672990:CDS |
ACTTTAGCTGATACATCCCT+TGG | 0.481619 | 4_4:+18781743 | Msa0672990:CDS |
ATGATTGAGTAAATTATAGC+TGG | 0.481999 | 4_4:-18782061 | None:intergenic |
AGGTAGCAAGAGAGAATAAG+TGG | 0.493452 | 4_4:+18776243 | Msa0672990:five_prime_UTR |
CTTTAGCAGTTGGGAACTTG+GGG | 0.506109 | 4_4:+18782353 | Msa0672990:CDS |
TTTGGTATGCCTTTAGCAGT+TGG | 0.508996 | 4_4:+18782343 | Msa0672990:CDS |
TCTATCATTTCATCTGATGA+AGG | 0.520096 | 4_4:-18781404 | None:intergenic |
TCTTGGTATTGGAATTGGAA+TGG | 0.520997 | 4_4:+18782315 | Msa0672990:CDS |
GTTGTTGGATCAGGAGTACA+AGG | 0.526318 | 4_4:+18782520 | Msa0672990:CDS |
GAGTTTAGGAACATTTGGAT+GGG | 0.530584 | 4_4:+18781430 | Msa0672990:CDS |
CCTTGCATTAGAAGCCACCT+TGG | 0.540142 | 4_4:-18782109 | None:intergenic |
GAGTACAAGGAATCAAAGTT+GGG | 0.541950 | 4_4:+18782533 | Msa0672990:CDS |
AACCAATGTTTGGATTTACT+CGG | 0.542219 | 4_4:+18781832 | Msa0672990:CDS |
TCTTTGTTACTGAGTCTCCA+AGG | 0.543866 | 4_4:+18782092 | Msa0672990:CDS |
ATATTAAGGAATTCTCTGGT+TGG | 0.548943 | 4_4:+18776293 | Msa0672990:five_prime_UTR |
CTTCTCTTATGGTGTGTTTG+GGG | 0.558622 | 4_4:+18782732 | Msa0672990:CDS |
AAGCTGGGCTTTGAAAAGAA+TGG | 0.558840 | 4_4:+18782279 | Msa0672990:CDS |
AAATAAGTAGCGACACAAGA+TGG | 0.560494 | 4_4:-18782421 | None:intergenic |
AATCTGTGCAATGCCATGTT+GGG | 0.563621 | 4_4:-18781538 | None:intergenic |
AAAGTTGTTTGAGAGAAGCT+GGG | 0.565151 | 4_4:+18782264 | Msa0672990:CDS |
GAGGGTGAAATTAATTATGA+AGG | 0.575824 | 4_4:+18776154 | Msa0672990:five_prime_UTR |
ACAAGGAATCAAAGTTGGGT+TGG | 0.576373 | 4_4:+18782537 | Msa0672990:CDS |
GAATCTGTGCAATGCCATGT+TGG | 0.577316 | 4_4:-18781539 | None:intergenic |
TGAAAACACAATGATGATTG+AGG | 0.578552 | 4_4:-18781810 | None:intergenic |
ACAAGATGGTATTTCCATCA+AGG | 0.583132 | 4_4:-18782407 | None:intergenic |
AAATCTTCATGGTCATGGGA+TGG | 0.583642 | 4_4:+18781602 | Msa0672990:CDS |
ACGAACGCCAGAATCCGATA+AGG | 0.591447 | 4_4:-18781865 | None:intergenic |
TGCATTTAGCAACAAACTCG+CGG | 0.597000 | 4_4:-18782194 | None:intergenic |
TGTGCAAGTAGCTTCATCAC+AGG | 0.598967 | 4_4:+18781665 | Msa0672990:CDS |
ACCGAGTGGAGGTTCACCGT+TGG | 0.604662 | 4_4:+18781932 | Msa0672990:CDS |
AGCCGAGTAAATCCAAACAT+TGG | 0.608114 | 4_4:-18781834 | None:intergenic |
CATCAGATGAAATGATAGAG+AGG | 0.609645 | 4_4:+18781408 | Msa0672990:CDS |
TTAGGGTACATGTCATTACC+TGG | 0.614178 | 4_4:+18781980 | Msa0672990:CDS |
GAGGAACACGACAACGTCGT+TGG | 0.615116 | 4_4:+18782639 | Msa0672990:CDS |
AAAATATTCAACAATTCCAA+CGG | 0.619929 | 4_4:-18781948 | None:intergenic |
CCAAGGTGGCTTCTAATGCA+AGG | 0.624152 | 4_4:+18782109 | Msa0672990:CDS |
GACAAGAGAGCAAAAGAGTG+AGG | 0.630962 | 4_4:+18776223 | Msa0672990:five_prime_UTR |
AATGCTTAAAGGAATGAGCT+CGG | 0.634915 | 4_4:+18782153 | Msa0672990:CDS |
AGTTGTTTCCGACAAGTGTG+AGG | 0.640373 | 4_4:+18782620 | Msa0672990:CDS |
ACACCGACGATTACCCAACA+TGG | 0.652539 | 4_4:+18781525 | Msa0672990:CDS |
TCCAACGGTGAACCTCCACT+CGG | 0.659472 | 4_4:-18781933 | None:intergenic |
CCTATGAAGAATGAAGATTG+TGG | 0.667133 | 4_4:-18781692 | None:intergenic |
TTGTTACTGAGTCTCCAAGG+TGG | 0.676486 | 4_4:+18782095 | Msa0672990:CDS |
ATGCCATGTTGGGTAATCGT+CGG | 0.699036 | 4_4:-18781528 | None:intergenic |
CATCAAGGCATTAAACACAA+CGG | 0.710182 | 4_4:-18782392 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTAATTAT+TGG | + | chr4_4:18779374-18779393 | Msa0672990:intron | 0.0% |
!!! | ATTCTTATTGATATTTTAAA+AGG | - | chr4_4:18777144-18777163 | None:intergenic | 10.0% |
!!! | TTATTTTATTTTGTATTAAC+AGG | - | chr4_4:18777721-18777740 | None:intergenic | 10.0% |
!! | GTAAAAATAATGAAATATAT+TGG | + | chr4_4:18778348-18778367 | Msa0672990:intron | 10.0% |
!!! | TAAGAATATTTTGTTTTTTT+AGG | + | chr4_4:18778418-18778437 | Msa0672990:intron | 10.0% |
!!! | AAGAATATTTTGTTTTTTTA+GGG | + | chr4_4:18778419-18778438 | Msa0672990:intron | 10.0% |
!!! | TTTATGTATTTTTGATATTT+TGG | + | chr4_4:18778776-18778795 | Msa0672990:intron | 10.0% |
!! | GAACAAAATAAAATAAAATA+TGG | - | chr4_4:18779236-18779255 | None:intergenic | 10.0% |
!!! | TAACAAAAAAATGATTTTTT+AGG | + | chr4_4:18779453-18779472 | Msa0672990:intron | 10.0% |
!! | TAGTGAAAATATTAATTAAA+AGG | + | chr4_4:18779555-18779574 | Msa0672990:intron | 10.0% |
!! | AATTAATTATGAAGGAAAAA+AGG | + | chr4_4:18776162-18776181 | Msa0672990:five_prime_UTR | 15.0% |
!! | TAATATCTCTATTATCTAAA+TGG | - | chr4_4:18776279-18776298 | None:intergenic | 15.0% |
!! | TTTAGATAATAGAGATATTA+AGG | + | chr4_4:18776279-18776298 | Msa0672990:five_prime_UTR | 15.0% |
!!! | ATAGTTTTGCATTTTATATA+TGG | - | chr4_4:18776446-18776465 | None:intergenic | 15.0% |
!! | CTATCATTATGAAATAAAAT+AGG | - | chr4_4:18778302-18778321 | None:intergenic | 15.0% |
!!! | CTATTTTATTTCATAATGAT+AGG | + | chr4_4:18778300-18778319 | Msa0672990:intron | 15.0% |
!!! | AGTCAAAAAATTGAATATTT+TGG | + | chr4_4:18778393-18778412 | Msa0672990:intron | 15.0% |
!!! | AGAATATTTTGTTTTTTTAG+GGG | + | chr4_4:18778420-18778439 | Msa0672990:intron | 15.0% |
!!! | ATGATATATAGTTTTATGTA+TGG | + | chr4_4:18778553-18778572 | Msa0672990:intron | 15.0% |
!!! | GTCTCAAATAAAAATTATTT+TGG | - | chr4_4:18778582-18778601 | None:intergenic | 15.0% |
!!! | TTTTTCATGTTGAAAATAAA+AGG | + | chr4_4:18778749-18778768 | Msa0672990:intron | 15.0% |
!! | AAAAAAAAAAAGAAGAAGAT+TGG | - | chr4_4:18778856-18778875 | None:intergenic | 15.0% |
!! | ACAATTAATGAATATGAATA+GGG | - | chr4_4:18779342-18779361 | None:intergenic | 15.0% |
!! | TACAATTAATGAATATGAAT+AGG | - | chr4_4:18779343-18779362 | None:intergenic | 15.0% |
!!! | CTTTATTTTACATGAATTAT+TGG | + | chr4_4:18779398-18779417 | Msa0672990:intron | 15.0% |
!! | AAAAACTAAAAATGACTAAT+TGG | - | chr4_4:18779609-18779628 | None:intergenic | 15.0% |
!!! | TCATTTTTAGTTTTTAAACA+GGG | + | chr4_4:18779614-18779633 | Msa0672990:intron | 15.0% |
!! | AATAAAGTTGAATGAAAAAA+TGG | - | chr4_4:18779701-18779720 | None:intergenic | 15.0% |
!!! | AATATGTTTTCTTGTTATTT+AGG | + | chr4_4:18779734-18779753 | Msa0672990:intron | 15.0% |
!! | TTAAATGTATCTAAGTAATA+AGG | - | chr4_4:18779793-18779812 | None:intergenic | 15.0% |
!! | TATGAAATTAATATCGAATT+AGG | - | chr4_4:18779828-18779847 | None:intergenic | 15.0% |
!!! | ACTCATTTTTTATTACATTT+TGG | + | chr4_4:18779947-18779966 | Msa0672990:intron | 15.0% |
!!! | CTCATTTTTTATTACATTTT+GGG | + | chr4_4:18779948-18779967 | Msa0672990:intron | 15.0% |
!!! | GCATATATTTTATCATTTAA+AGG | + | chr4_4:18780154-18780173 | Msa0672990:intron | 15.0% |
!!! | TTGGTTTTTTAGTTTAAAAT+TGG | - | chr4_4:18780211-18780230 | None:intergenic | 15.0% |
!! | TTTAAACTAAAAAACCAAAA+AGG | + | chr4_4:18780213-18780232 | Msa0672990:intron | 15.0% |
!!! | TTATATTAGATTAACCTTTT+TGG | - | chr4_4:18780230-18780249 | None:intergenic | 15.0% |
!!! | TTCCACTATATTTTTTTTTT+GGG | - | chr4_4:18780423-18780442 | None:intergenic | 15.0% |
!!! | ATTCCACTATATTTTTTTTT+TGG | - | chr4_4:18780424-18780443 | None:intergenic | 15.0% |
!!! | AAATTACAAAGGTATAATTA+AGG | + | chr4_4:18781163-18781182 | Msa0672990:intron | 15.0% |
!! | AAACCAAATAAATAGTTTAA+GGG | + | chr4_4:18781223-18781242 | Msa0672990:intron | 15.0% |
!! | AATTAAGAATGCTCAATAAA+AGG | + | chr4_4:18776192-18776211 | Msa0672990:five_prime_UTR | 20.0% |
!!! | AATTTCAATTTTTTCTCTGA+TGG | - | chr4_4:18776818-18776837 | None:intergenic | 20.0% |
!!! | AATGAATTTGATTTGTGATT+TGG | - | chr4_4:18776900-18776919 | None:intergenic | 20.0% |
!!! | TTTTTTTAGATCAACATAGT+TGG | - | chr4_4:18776954-18776973 | None:intergenic | 20.0% |
!!! | AAGGATTAGTAATATCAATT+AGG | + | chr4_4:18777109-18777128 | Msa0672990:intron | 20.0% |
!!! | CATTCATGTACTTTAAATTT+TGG | - | chr4_4:18777243-18777262 | None:intergenic | 20.0% |
!! | CTTGTAAACTTACTTATATT+TGG | - | chr4_4:18777437-18777456 | None:intergenic | 20.0% |
!! | CAAATATAAGTAAGTTTACA+AGG | + | chr4_4:18777435-18777454 | Msa0672990:intron | 20.0% |
!!! | TGTATAAGATATGTTGATTT+GGG | - | chr4_4:18777513-18777532 | None:intergenic | 20.0% |
!! | CATATAATGAACTATGTAAA+GGG | + | chr4_4:18777611-18777630 | Msa0672990:intron | 20.0% |
!! | AATAATATTGAGATTACCTT+AGG | + | chr4_4:18778051-18778070 | Msa0672990:intron | 20.0% |
!! | ATAATATTGAGATTACCTTA+GGG | + | chr4_4:18778052-18778071 | Msa0672990:intron | 20.0% |
!!! | TTTTATTTCATAATGATAGG+TGG | + | chr4_4:18778303-18778322 | Msa0672990:intron | 20.0% |
!! | TGGTACTATATGAATTATTT+AGG | + | chr4_4:18778368-18778387 | Msa0672990:intron | 20.0% |
!!! | TAGTATGTTTTTGCTTTTAA+CGG | + | chr4_4:18778905-18778924 | Msa0672990:intron | 20.0% |
!! | CATTAAATAATGAGTATACT+TGG | + | chr4_4:18779478-18779497 | Msa0672990:intron | 20.0% |
!! | AGTTTAGTTATTATGCTTAT+TGG | - | chr4_4:18779517-18779536 | None:intergenic | 20.0% |
!!! | GTCATTTTTAGTTTTTAAAC+AGG | + | chr4_4:18779613-18779632 | Msa0672990:intron | 20.0% |
!!! | TCAATTTTTGCTTACATTTT+GGG | - | chr4_4:18779869-18779888 | None:intergenic | 20.0% |
!!! | ATCAATTTTTGCTTACATTT+TGG | - | chr4_4:18779870-18779889 | None:intergenic | 20.0% |
!! | TCAACAAAAGTTAATGTATT+TGG | + | chr4_4:18779889-18779908 | Msa0672990:intron | 20.0% |
!!! | TTTAGGTTTAATTACTCTTT+TGG | + | chr4_4:18780947-18780966 | Msa0672990:intron | 20.0% |
!! | AGTAAAAGAGATAAGATTAA+GGG | - | chr4_4:18781029-18781048 | None:intergenic | 20.0% |
!! | TATTTAACCCCAAATAATTA+AGG | + | chr4_4:18781071-18781090 | Msa0672990:intron | 20.0% |
!!! | TGTTTCTACTTAAATTACAA+AGG | + | chr4_4:18781152-18781171 | Msa0672990:intron | 20.0% |
!! | GAAACCAAATAAATAGTTTA+AGG | + | chr4_4:18781222-18781241 | Msa0672990:intron | 20.0% |
!! | TTACCCTTAAACTATTTATT+TGG | - | chr4_4:18781229-18781248 | None:intergenic | 20.0% |
!! | AAAAAACAATCATATCTCAA+TGG | + | chr4_4:18781633-18781652 | Msa0672990:CDS | 20.0% |
!! | AAAATATTCAACAATTCCAA+CGG | - | chr4_4:18781951-18781970 | None:intergenic | 20.0% |
!!! | AATATTTTTGCTTCACATTA+GGG | + | chr4_4:18781963-18781982 | Msa0672990:CDS | 20.0% |
!!! | CTTAAAATCTTGTTTTGCTT+TGG | + | chr4_4:18776517-18776536 | Msa0672990:intron | 25.0% |
! | TAATAAGAACATAACATGAG+AGG | - | chr4_4:18776574-18776593 | None:intergenic | 25.0% |
!! | TTGATTGAGAACTTTTTGTA+TGG | - | chr4_4:18776642-18776661 | None:intergenic | 25.0% |
! | AATTACTGGACAAGTTTATA+AGG | + | chr4_4:18777090-18777109 | Msa0672990:intron | 25.0% |
! | TATCAATAAGAATTGCAAAC+TGG | + | chr4_4:18777151-18777170 | Msa0672990:intron | 25.0% |
! | ATCAATAAGAATTGCAAACT+GGG | + | chr4_4:18777152-18777171 | Msa0672990:intron | 25.0% |
! | AACAAAATCTGTAGCAATAA+TGG | + | chr4_4:18777193-18777212 | Msa0672990:intron | 25.0% |
!!! | GTATAAGATATGTTGATTTG+GGG | - | chr4_4:18777512-18777531 | None:intergenic | 25.0% |
!! | CTGTATAAGATATGTTGATT+TGG | - | chr4_4:18777514-18777533 | None:intergenic | 25.0% |
! | CCTTTACATAGTTCATTATA+TGG | - | chr4_4:18777613-18777632 | None:intergenic | 25.0% |
! | CCATATAATGAACTATGTAA+AGG | + | chr4_4:18777610-18777629 | Msa0672990:intron | 25.0% |
! | TCAATATTATTATCATGCCA+TGG | - | chr4_4:18778042-18778061 | None:intergenic | 25.0% |
! | TAATATTGAGATTACCTTAG+GGG | + | chr4_4:18778053-18778072 | Msa0672990:intron | 25.0% |
!! | TAGTCTTTTCACGAAATAAA+TGG | + | chr4_4:18778081-18778100 | Msa0672990:intron | 25.0% |
!! | AGTCTTTTCACGAAATAAAT+GGG | + | chr4_4:18778082-18778101 | Msa0672990:intron | 25.0% |
!!! | GTTTTTTGTTTTTGCACAAA+AGG | - | chr4_4:18778270-18778289 | None:intergenic | 25.0% |
!!! | ATATTTTGTTTTTTTAGGGG+AGG | + | chr4_4:18778423-18778442 | Msa0672990:intron | 25.0% |
!! | AGGTGCAATAAATTCTTTTA+TGG | + | chr4_4:18778443-18778462 | Msa0672990:intron | 25.0% |
! | ATGAGAATACATAACTGTAT+TGG | + | chr4_4:18778661-18778680 | Msa0672990:intron | 25.0% |
! | TTGTCTTATGGTTTAGATAT+TGG | + | chr4_4:18778814-18778833 | Msa0672990:intron | 25.0% |
! | AGTGCATGATTTATTATCAA+CGG | + | chr4_4:18779086-18779105 | Msa0672990:intron | 25.0% |
! | AATTATCAACATTCCTTTGT+TGG | - | chr4_4:18779190-18779209 | None:intergenic | 25.0% |
! | TTCCAACATTTATACTCTTA+TGG | + | chr4_4:18779253-18779272 | Msa0672990:intron | 25.0% |
! | ATACTCTTATGGTGTATATA+TGG | + | chr4_4:18779264-18779283 | Msa0672990:intron | 25.0% |
!!! | ATGTTTTCTTGTTATTTAGG+TGG | + | chr4_4:18779737-18779756 | Msa0672990:intron | 25.0% |
! | TGTATCTAAGTAATAAGGTT+CGG | - | chr4_4:18779788-18779807 | None:intergenic | 25.0% |
! | GCAAAAGATTATTGTTAAGT+TGG | - | chr4_4:18780093-18780112 | None:intergenic | 25.0% |
! | TGGTCATTTATGTTAGTAAA+GGG | - | chr4_4:18780191-18780210 | None:intergenic | 25.0% |
! | TTGGTCATTTATGTTAGTAA+AGG | - | chr4_4:18780192-18780211 | None:intergenic | 25.0% |
! | TTCAGTATGTCAAAATATAG+TGG | + | chr4_4:18780316-18780335 | Msa0672990:intron | 25.0% |
! | GACAATACATATTATATGCA+AGG | + | chr4_4:18780372-18780391 | Msa0672990:intron | 25.0% |
!!! | CACTATATTTTTTTTTTGGG+TGG | - | chr4_4:18780420-18780439 | None:intergenic | 25.0% |
! | CACCCAAAAAAAAAATATAG+TGG | + | chr4_4:18780418-18780437 | Msa0672990:intron | 25.0% |
!! | AAACTTCCTTCTCTTTTATA+CGG | - | chr4_4:18780462-18780481 | None:intergenic | 25.0% |
! | AAGTATTTAAACACACAATC+TGG | + | chr4_4:18780493-18780512 | Msa0672990:intron | 25.0% |
! | AGAATATAATGTGAGTATGA+GGG | - | chr4_4:18780710-18780729 | None:intergenic | 25.0% |
! | AAGAATATAATGTGAGTATG+AGG | - | chr4_4:18780711-18780730 | None:intergenic | 25.0% |
!! | TTCATTTTCTCTCTTTTCAT+TGG | - | chr4_4:18780774-18780793 | None:intergenic | 25.0% |
!! | TGATATATGGACAATCATTT+TGG | - | chr4_4:18780815-18780834 | None:intergenic | 25.0% |
!!! | TTTTAGTTTCGTTTTCTTGT+TGG | - | chr4_4:18780866-18780885 | None:intergenic | 25.0% |
! | CCTAAATAGACAAAATTGTA+GGG | - | chr4_4:18780933-18780952 | None:intergenic | 25.0% |
! | ACCTAAATAGACAAAATTGT+AGG | - | chr4_4:18780934-18780953 | None:intergenic | 25.0% |
! | GAGTAAAAGAGATAAGATTA+AGG | - | chr4_4:18781030-18781049 | None:intergenic | 25.0% |
!! | CTTATCTCTTTTACTCAAAT+AGG | + | chr4_4:18781034-18781053 | Msa0672990:intron | 25.0% |
! | TTAGTCCACCTTAATTATTT+GGG | - | chr4_4:18781082-18781101 | None:intergenic | 25.0% |
!! | CATTTGAGGTTAAATATTGA+CGG | + | chr4_4:18781127-18781146 | Msa0672990:intron | 25.0% |
!!! | GATATGATTGTTTTTTGTGA+TGG | - | chr4_4:18781629-18781648 | None:intergenic | 25.0% |
!!! | ATGTGTTCTTGTTTTGTTAA+CGG | + | chr4_4:18781898-18781917 | Msa0672990:CDS | 25.0% |
!!! | GAATATTTTTGCTTCACATT+AGG | + | chr4_4:18781962-18781981 | Msa0672990:CDS | 25.0% |
! | ATGATTGAGTAAATTATAGC+TGG | - | chr4_4:18782064-18782083 | None:intergenic | 25.0% |
! | GCTATAATTTACTCAATCAT+TGG | + | chr4_4:18782064-18782083 | Msa0672990:CDS | 25.0% |
! | ATTGAAAATGCAAGAATTGA+CGG | - | chr4_4:18782469-18782488 | None:intergenic | 25.0% |
! | AAAAATGATGTCTTCTCTTA+TGG | + | chr4_4:18782721-18782740 | Msa0672990:CDS | 25.0% |
GAGGGTGAAATTAATTATGA+AGG | + | chr4_4:18776154-18776173 | Msa0672990:five_prime_UTR | 30.0% | |
AGAGATATTAAGGAATTCTC+TGG | + | chr4_4:18776289-18776308 | Msa0672990:five_prime_UTR | 30.0% | |
ATATTAAGGAATTCTCTGGT+TGG | + | chr4_4:18776293-18776312 | Msa0672990:five_prime_UTR | 30.0% | |
TCACAAAGTATGAAAGGAAA+GGG | - | chr4_4:18776545-18776564 | None:intergenic | 30.0% | |
TTCACAAAGTATGAAAGGAA+AGG | - | chr4_4:18776546-18776565 | None:intergenic | 30.0% | |
AGGAATTCACAAAGTATGAA+AGG | - | chr4_4:18776551-18776570 | None:intergenic | 30.0% | |
!!! | TTCAATTTTTTCTCTGATGG+CGG | - | chr4_4:18776815-18776834 | None:intergenic | 30.0% |
!! | GTTGGTGAATTTTTGTCATT+AGG | - | chr4_4:18776936-18776955 | None:intergenic | 30.0% |
TTGATCTAAAAAAAGCAGCT+AGG | + | chr4_4:18776960-18776979 | Msa0672990:intron | 30.0% | |
! | GATGAAGTTGATTTAGAAGA+TGG | + | chr4_4:18776986-18777005 | Msa0672990:intron | 30.0% |
! | AATCACTTGAGTTTTTGTTC+CGG | - | chr4_4:18777067-18777086 | None:intergenic | 30.0% |
CTCAAGTGATTAGTAATTAC+TGG | + | chr4_4:18777076-18777095 | Msa0672990:intron | 30.0% | |
GAAAGTAAAGCTGCAAAATA+AGG | + | chr4_4:18777288-18777307 | Msa0672990:intron | 30.0% | |
! | CAAACATTTTTGACCTTTCT+TGG | + | chr4_4:18777334-18777353 | Msa0672990:intron | 30.0% |
!!! | ATGAGAATTTTTTTGCCTTG+TGG | - | chr4_4:18777380-18777399 | None:intergenic | 30.0% |
ATTGTCCATCATCAAATACA+TGG | + | chr4_4:18777402-18777421 | Msa0672990:intron | 30.0% | |
ATGTTATGTCAAGTGAAACA+GGG | - | chr4_4:18777486-18777505 | None:intergenic | 30.0% | |
TATGTTATGTCAAGTGAAAC+AGG | - | chr4_4:18777487-18777506 | None:intergenic | 30.0% | |
TGTTTCACTTGACATAACAT+AGG | + | chr4_4:18777486-18777505 | Msa0672990:intron | 30.0% | |
CAGTTATGCTAATCATATCA+AGG | + | chr4_4:18777531-18777550 | Msa0672990:intron | 30.0% | |
ATAATCACAGTCAGATTTGT+TGG | + | chr4_4:18777761-18777780 | Msa0672990:intron | 30.0% | |
TAATAATTGGCCACTACTTT+AGG | + | chr4_4:18777799-18777818 | Msa0672990:intron | 30.0% | |
ATTCTGATTACCTAAAGTAG+TGG | - | chr4_4:18777812-18777831 | None:intergenic | 30.0% | |
CTACTTTAGGTAATCAGAAT+CGG | + | chr4_4:18777812-18777831 | Msa0672990:intron | 30.0% | |
GAAGAGGAAAATAAGTAACA+CGG | + | chr4_4:18777970-18777989 | Msa0672990:intron | 30.0% | |
AAGTAGAAGAGGAAAATACA+TGG | + | chr4_4:18778002-18778021 | Msa0672990:intron | 30.0% | |
AATACATGGATGGTTATGAT+TGG | + | chr4_4:18778016-18778035 | Msa0672990:intron | 30.0% | |
AAAAGACTATAATACCCCTA+AGG | - | chr4_4:18778070-18778089 | None:intergenic | 30.0% | |
! | TTTTCACGAAATAAATGGGT+AGG | + | chr4_4:18778086-18778105 | Msa0672990:intron | 30.0% |
! | GTTTTTGCACAAAAGGATAT+AGG | - | chr4_4:18778263-18778282 | None:intergenic | 30.0% |
AAAAGTTGCATGTTGTCTTA+TGG | + | chr4_4:18778802-18778821 | Msa0672990:intron | 30.0% | |
TTAAGTGTTTAGAGATGTGA+TGG | + | chr4_4:18778945-18778964 | Msa0672990:intron | 30.0% | |
TAAGTGTTTAGAGATGTGAT+GGG | + | chr4_4:18778946-18778965 | Msa0672990:intron | 30.0% | |
CTGTAACTATATTTACAGCA+GGG | - | chr4_4:18778980-18778999 | None:intergenic | 30.0% | |
CTGTAAATATAGTTACAGCA+GGG | + | chr4_4:18778982-18779001 | Msa0672990:intron | 30.0% | |
ATTGTGTGGTTAAGATGATT+TGG | + | chr4_4:18779036-18779055 | Msa0672990:intron | 30.0% | |
AAGACATCATTATCACATCT+CGG | - | chr4_4:18779167-18779186 | None:intergenic | 30.0% | |
ATAATGATGTCTTCCAACAA+AGG | + | chr4_4:18779174-18779193 | Msa0672990:intron | 30.0% | |
! | CACCATAAGAGTATAAATGT+TGG | - | chr4_4:18779258-18779277 | None:intergenic | 30.0% |
ATGGTGTATATATGGAGAAT+TGG | + | chr4_4:18779272-18779291 | Msa0672990:intron | 30.0% | |
!! | TTTTTGCTTACATTTTGGGA+TGG | - | chr4_4:18779865-18779884 | None:intergenic | 30.0% |
!! | TCAACATAAGTTGATGTATC+TGG | - | chr4_4:18779928-18779947 | None:intergenic | 30.0% |
!!! | TTTATTACATTTTGGGACAG+AGG | + | chr4_4:18779955-18779974 | Msa0672990:intron | 30.0% |
!!! | CATTTTGAGAGCATTCAATT+TGG | + | chr4_4:18780062-18780081 | Msa0672990:intron | 30.0% |
!! | AAGATTATTGTTAAGTTGGC+AGG | - | chr4_4:18780089-18780108 | None:intergenic | 30.0% |
GGTCATTTATGTTAGTAAAG+GGG | - | chr4_4:18780190-18780209 | None:intergenic | 30.0% | |
TACATATTATATGCAAGGTC+CGG | + | chr4_4:18780377-18780396 | Msa0672990:intron | 30.0% | |
! | GTTTTTCCGTATAAAAGAGA+AGG | + | chr4_4:18780453-18780472 | Msa0672990:intron | 30.0% |
TGTGAAAGAGTAGTGATATA+TGG | - | chr4_4:18780828-18780847 | None:intergenic | 30.0% | |
! | CCCTACAATTTTGTCTATTT+AGG | + | chr4_4:18780930-18780949 | Msa0672990:intron | 30.0% |
TTAACCCCAAATAATTAAGG+TGG | + | chr4_4:18781074-18781093 | Msa0672990:intron | 30.0% | |
TAGTCCACCTTAATTATTTG+GGG | - | chr4_4:18781081-18781100 | None:intergenic | 30.0% | |
GTTAGTCCACCTTAATTATT+TGG | - | chr4_4:18781083-18781102 | None:intergenic | 30.0% | |
!!! | TTAAGGTGGACTAACATTTT+AGG | + | chr4_4:18781088-18781107 | Msa0672990:intron | 30.0% |
TTTCACTTTAGACACATTTG+AGG | + | chr4_4:18781113-18781132 | Msa0672990:intron | 30.0% | |
GGTATAATTAAGGATCCAAA+CGG | + | chr4_4:18781173-18781192 | Msa0672990:intron | 30.0% | |
! | AAATTTTTATTGTGCTTCGC+AGG | + | chr4_4:18781370-18781389 | Msa0672990:intron | 30.0% |
TCTATCATTTCATCTGATGA+AGG | - | chr4_4:18781407-18781426 | None:intergenic | 30.0% | |
CTAATGCAAAAGAACCAATT+AGG | - | chr4_4:18781721-18781740 | None:intergenic | 30.0% | |
!!! | CAACATGTTTTTTCTTCCAA+GGG | - | chr4_4:18781762-18781781 | None:intergenic | 30.0% |
!!! | TCAACATGTTTTTTCTTCCA+AGG | - | chr4_4:18781763-18781782 | None:intergenic | 30.0% |
TGAAAACACAATGATGATTG+AGG | - | chr4_4:18781813-18781832 | None:intergenic | 30.0% | |
! | TTGTGTTTTCAACCAATGTT+TGG | + | chr4_4:18781822-18781841 | Msa0672990:CDS | 30.0% |
AACCAATGTTTGGATTTACT+CGG | + | chr4_4:18781832-18781851 | Msa0672990:CDS | 30.0% | |
!! | ATGTTTTTCGATTTTCATCG+TGG | + | chr4_4:18782011-18782030 | Msa0672990:CDS | 30.0% |
CGTGGAAAAATGTTTACATT+TGG | + | chr4_4:18782029-18782048 | Msa0672990:CDS | 30.0% | |
! | GGAATTGGAATGGTTTATTT+TGG | + | chr4_4:18782325-18782344 | Msa0672990:CDS | 30.0% |
!!! | ATCGTTTTTTAGTGCTACTA+CGG | + | chr4_4:18782567-18782586 | Msa0672990:CDS | 30.0% |
TGATTCAACATGCAGATCTA+TGG | + | chr4_4:18776341-18776360 | Msa0672990:CDS | 35.0% | |
TAAGAACATAACATGAGAGG+AGG | - | chr4_4:18776571-18776590 | None:intergenic | 35.0% | |
AGTTCTCAATCAATCTAACG+TGG | + | chr4_4:18776649-18776668 | Msa0672990:intron | 35.0% | |
GAAGATGGTCTTCAAAAACA+AGG | + | chr4_4:18777001-18777020 | Msa0672990:intron | 35.0% | |
! | GGTGTTGAATTAACCAAAGA+AGG | + | chr4_4:18777025-18777044 | Msa0672990:intron | 35.0% |
TCATAATCTCACTCCTTCTT+TGG | - | chr4_4:18777041-18777060 | None:intergenic | 35.0% | |
AGTACATGAATGAGAATCTG+AGG | + | chr4_4:18777251-18777270 | Msa0672990:intron | 35.0% | |
GTACATGAATGAGAATCTGA+GGG | + | chr4_4:18777252-18777271 | Msa0672990:intron | 35.0% | |
TCCATCATCAAATACATGGA+TGG | + | chr4_4:18777406-18777425 | Msa0672990:intron | 35.0% | |
TCCATCCATGTATTTGATGA+TGG | - | chr4_4:18777410-18777429 | None:intergenic | 35.0% | |
TAACAGGTTTATGAGCTAGT+AGG | - | chr4_4:18777705-18777724 | None:intergenic | 35.0% | |
ATCTGACTGTGATTATGTGA+AGG | - | chr4_4:18777757-18777776 | None:intergenic | 35.0% | |
ATCGGTATCAGATGTAAAAC+AGG | + | chr4_4:18777830-18777849 | Msa0672990:intron | 35.0% | |
! | AAGAATGAGTAGTGGCTTTT+GGG | - | chr4_4:18777871-18777890 | None:intergenic | 35.0% |
! | TAAGAATGAGTAGTGGCTTT+TGG | - | chr4_4:18777872-18777891 | None:intergenic | 35.0% |
TCCATCATAAGAATGAGTAG+TGG | - | chr4_4:18777879-18777898 | None:intergenic | 35.0% | |
! | CATTCTTATGATGGAGTTTC+AGG | + | chr4_4:18777884-18777903 | Msa0672990:intron | 35.0% |
TTCAAACTTTCCTCCTTCTT+TGG | - | chr4_4:18777947-18777966 | None:intergenic | 35.0% | |
! | AGGAAAGTTTGAAGTAGAAG+AGG | + | chr4_4:18777954-18777973 | Msa0672990:intron | 35.0% |
AGAAGAGGAAAATACATGGA+TGG | + | chr4_4:18778006-18778025 | Msa0672990:intron | 35.0% | |
ATTTCTCATCTTACAAGCAG+AGG | - | chr4_4:18778144-18778163 | None:intergenic | 35.0% | |
GCTGTAACTATATTTACAGC+AGG | - | chr4_4:18778981-18779000 | None:intergenic | 35.0% | |
GCTGTAAATATAGTTACAGC+AGG | + | chr4_4:18778981-18779000 | Msa0672990:intron | 35.0% | |
CTTAACCACACAATTCAGAT+CGG | - | chr4_4:18779030-18779049 | None:intergenic | 35.0% | |
!!! | GTAAACAGCGTGCTTTTTTA+CGG | + | chr4_4:18779127-18779146 | Msa0672990:intron | 35.0% |
AGACATCATTATCACATCTC+GGG | - | chr4_4:18779166-18779185 | None:intergenic | 35.0% | |
TAGGTGGAAGATCCTATAAA+TGG | + | chr4_4:18779753-18779772 | Msa0672990:intron | 35.0% | |
! | GGATTTTGGATGACTTCAAT+AGG | - | chr4_4:18780287-18780306 | None:intergenic | 35.0% |
! | CTGAAAGCAAAGTTGGATTT+TGG | - | chr4_4:18780301-18780320 | None:intergenic | 35.0% |
TGACATACTGAAAGCAAAGT+TGG | - | chr4_4:18780308-18780327 | None:intergenic | 35.0% | |
ACATATTATATGCAAGGTCC+GGG | + | chr4_4:18780378-18780397 | Msa0672990:intron | 35.0% | |
AACAATAGAGAGAGAGAGAA+AGG | - | chr4_4:18780746-18780765 | None:intergenic | 35.0% | |
! | TCTCTCTCTCTCTATTGTTT+TGG | + | chr4_4:18780747-18780766 | Msa0672990:intron | 35.0% |
TCTTTCACAAAAGTGAGCAT+AGG | + | chr4_4:18780839-18780858 | Msa0672990:intron | 35.0% | |
ATAGACAAAATTGTAGGGTG+TGG | - | chr4_4:18780928-18780947 | None:intergenic | 35.0% | |
! | TTTACTAGTTTCGTTCCGTT+TGG | - | chr4_4:18781191-18781210 | None:intergenic | 35.0% |
AACGGAACGAAACTAGTAAA+AGG | + | chr4_4:18781191-18781210 | Msa0672990:intron | 35.0% | |
CATCAGATGAAATGATAGAG+AGG | + | chr4_4:18781408-18781427 | Msa0672990:CDS | 35.0% | |
GAAATGATAGAGAGGAGTTT+AGG | + | chr4_4:18781416-18781435 | Msa0672990:CDS | 35.0% | |
GAGTTTAGGAACATTTGGAT+GGG | + | chr4_4:18781430-18781449 | Msa0672990:CDS | 35.0% | |
GCAAAATCCCAAAATCTTCA+TGG | + | chr4_4:18781591-18781610 | Msa0672990:CDS | 35.0% | |
CCTATGAAGAATGAAGATTG+TGG | - | chr4_4:18781695-18781714 | None:intergenic | 35.0% | |
CCACAATCTTCATTCTTCAT+AGG | + | chr4_4:18781692-18781711 | Msa0672990:CDS | 35.0% | |
TTCTTCATAGGTTGCCTAAT+TGG | + | chr4_4:18781704-18781723 | Msa0672990:CDS | 35.0% | |
TCGGCTTTCAAATTCCTTAT+CGG | + | chr4_4:18781851-18781870 | Msa0672990:CDS | 35.0% | |
TCAAATTCCTTATCGGATTC+TGG | + | chr4_4:18781858-18781877 | Msa0672990:CDS | 35.0% | |
! | TAAGCATTGCAATTGCTTCT+TGG | - | chr4_4:18782141-18782160 | None:intergenic | 35.0% |
GAAGCAATTGCAATGCTTAA+AGG | + | chr4_4:18782142-18782161 | Msa0672990:CDS | 35.0% | |
AATGCTTAAAGGAATGAGCT+CGG | + | chr4_4:18782153-18782172 | Msa0672990:CDS | 35.0% | |
!! | AAACCGAAGCCTTTTGTTTA+GGG | - | chr4_4:18782222-18782241 | None:intergenic | 35.0% |
!! | AAAACCGAAGCCTTTTGTTT+AGG | - | chr4_4:18782223-18782242 | None:intergenic | 35.0% |
AAAGTTGTTTGAGAGAAGCT+GGG | + | chr4_4:18782264-18782283 | Msa0672990:CDS | 35.0% | |
GAAAAGAATGGTTGCAATGA+TGG | + | chr4_4:18782291-18782310 | Msa0672990:CDS | 35.0% | |
! | ATGGTTCTTGGTATTGGAAT+TGG | + | chr4_4:18782310-18782329 | Msa0672990:CDS | 35.0% |
! | TCTTGGTATTGGAATTGGAA+TGG | + | chr4_4:18782315-18782334 | Msa0672990:CDS | 35.0% |
! | CATCAAGGCATTAAACACAA+CGG | - | chr4_4:18782395-18782414 | None:intergenic | 35.0% |
ACAAGATGGTATTTCCATCA+AGG | - | chr4_4:18782410-18782429 | None:intergenic | 35.0% | |
AAATAAGTAGCGACACAAGA+TGG | - | chr4_4:18782424-18782443 | None:intergenic | 35.0% | |
! | TTGTGTCGCTACTTATTTCT+TGG | + | chr4_4:18782426-18782445 | Msa0672990:CDS | 35.0% |
! | TGTGTTATGTGTGTTGTTGT+TGG | + | chr4_4:18782505-18782524 | Msa0672990:CDS | 35.0% |
GAGTACAAGGAATCAAAGTT+GGG | + | chr4_4:18782533-18782552 | Msa0672990:CDS | 35.0% | |
! | GTGAGACAAGCTATTGTTTT+CGG | + | chr4_4:18782661-18782680 | Msa0672990:CDS | 35.0% |
!!! | AGTCCTTTTTTGATATCTGC+TGG | + | chr4_4:18782694-18782713 | Msa0672990:CDS | 35.0% |
!!! | GTCCTTTTTTGATATCTGCT+GGG | + | chr4_4:18782695-18782714 | Msa0672990:CDS | 35.0% |
TCTTCTCTTATGGTGTGTTT+GGG | + | chr4_4:18782731-18782750 | Msa0672990:CDS | 35.0% | |
ACAAGCTCTTTGTGATACTA+TGG | + | chr4_4:18782807-18782826 | Msa0672990:CDS | 35.0% | |
AGGTAGCAAGAGAGAATAAG+TGG | + | chr4_4:18776243-18776262 | Msa0672990:five_prime_UTR | 40.0% | |
AGGAATTCTCTGGTTGGATA+TGG | + | chr4_4:18776299-18776318 | Msa0672990:exon | 40.0% | |
GTTGGATATGGCTTCTATTG+AGG | + | chr4_4:18776311-18776330 | Msa0672990:exon | 40.0% | |
TGCTTACAAGACGACATGTA+AGG | - | chr4_4:18776753-18776772 | None:intergenic | 40.0% | |
! | GGAGCCAGCCAAAAAATTTT+GGG | + | chr4_4:18776778-18776797 | Msa0672990:intron | 40.0% |
! | GAGCCAGCCAAAAAATTTTG+GGG | + | chr4_4:18776779-18776798 | Msa0672990:intron | 40.0% |
GATGGTCTTCAAAAACAAGG+TGG | + | chr4_4:18777004-18777023 | Msa0672990:intron | 40.0% | |
TTTGCCTTGTGGTTCAGATT+GGG | - | chr4_4:18777369-18777388 | None:intergenic | 40.0% | |
! | TTTTGCCTTGTGGTTCAGAT+TGG | - | chr4_4:18777370-18777389 | None:intergenic | 40.0% |
TATGTCAAGTGAAACAGGGA+GGG | - | chr4_4:18777482-18777501 | None:intergenic | 40.0% | |
TTATGTCAAGTGAAACAGGG+AGG | - | chr4_4:18777483-18777502 | None:intergenic | 40.0% | |
!! | TAGGAGAATGATGGATCTTG+CGG | - | chr4_4:18777686-18777705 | None:intergenic | 40.0% |
ATGAGCTAGTAGGAGAATGA+TGG | - | chr4_4:18777695-18777714 | None:intergenic | 40.0% | |
GCCACTACTCATTCTTATGA+TGG | + | chr4_4:18777875-18777894 | Msa0672990:intron | 40.0% | |
! | TCTTATGATGGAGTTTCAGG+TGG | + | chr4_4:18777887-18777906 | Msa0672990:intron | 40.0% |
!! | TTGCTGCTTCATTTTCTCTC+AGG | - | chr4_4:18777924-18777943 | None:intergenic | 40.0% |
AATGAAGCAGCAACCAAAGA+AGG | + | chr4_4:18777931-18777950 | Msa0672990:intron | 40.0% | |
! | GTTTAGAGATGTGATGGGAT+TGG | + | chr4_4:18778951-18778970 | Msa0672990:intron | 40.0% |
!! | CGGTGTCATAGACCATTTAT+AGG | - | chr4_4:18779768-18779787 | None:intergenic | 40.0% |
!!! | TGCTTACATTTTGGGATGGA+GGG | - | chr4_4:18779861-18779880 | None:intergenic | 40.0% |
!!! | TTGCTTACATTTTGGGATGG+AGG | - | chr4_4:18779862-18779881 | None:intergenic | 40.0% |
AATAGGTCATATGCATCACG+AGG | - | chr4_4:18780270-18780289 | None:intergenic | 40.0% | |
CATATTATATGCAAGGTCCG+GGG | + | chr4_4:18780379-18780398 | Msa0672990:intron | 40.0% | |
GGGAGAAAGTTGTCAAAAAG+TGG | - | chr4_4:18780690-18780709 | None:intergenic | 40.0% | |
!! | ACACACACTCTAAAGTTGCA+CGG | - | chr4_4:18781289-18781308 | None:intergenic | 40.0% |
TATTGTGCTTCGCAGGAAAA+AGG | + | chr4_4:18781377-18781396 | Msa0672990:intron | 40.0% | |
GAGAGGAGTTTAGGAACATT+TGG | + | chr4_4:18781425-18781444 | Msa0672990:CDS | 40.0% | |
GGAGTTTAGGAACATTTGGA+TGG | + | chr4_4:18781429-18781448 | Msa0672990:CDS | 40.0% | |
AATCTGTGCAATGCCATGTT+GGG | - | chr4_4:18781541-18781560 | None:intergenic | 40.0% | |
TCCCAAAATCTTCATGGTCA+TGG | + | chr4_4:18781597-18781616 | Msa0672990:CDS | 40.0% | |
! | CCCATGACCATGAAGATTTT+GGG | - | chr4_4:18781601-18781620 | None:intergenic | 40.0% |
CCCAAAATCTTCATGGTCAT+GGG | + | chr4_4:18781598-18781617 | Msa0672990:CDS | 40.0% | |
! | TCCCATGACCATGAAGATTT+TGG | - | chr4_4:18781602-18781621 | None:intergenic | 40.0% |
AAATCTTCATGGTCATGGGA+TGG | + | chr4_4:18781602-18781621 | Msa0672990:CDS | 40.0% | |
ACTTTAGCTGATACATCCCT+TGG | + | chr4_4:18781743-18781762 | Msa0672990:CDS | 40.0% | |
AGCCGAGTAAATCCAAACAT+TGG | - | chr4_4:18781837-18781856 | None:intergenic | 40.0% | |
! | AAAAAGTTAGTACCGAGTGG+AGG | + | chr4_4:18781921-18781940 | Msa0672990:CDS | 40.0% |
TTAGGGTACATGTCATTACC+TGG | + | chr4_4:18781980-18781999 | Msa0672990:CDS | 40.0% | |
CGAAAAACATAAGCTACACC+AGG | - | chr4_4:18782001-18782020 | None:intergenic | 40.0% | |
TCTTTGTTACTGAGTCTCCA+AGG | + | chr4_4:18782092-18782111 | Msa0672990:CDS | 40.0% | |
TGCATTTAGCAACAAACTCG+CGG | - | chr4_4:18782197-18782216 | None:intergenic | 40.0% | |
AAATGCACCCCCTAAACAAA+AGG | + | chr4_4:18782210-18782229 | Msa0672990:CDS | 40.0% | |
!! | AACCGAAGCCTTTTGTTTAG+GGG | - | chr4_4:18782221-18782240 | None:intergenic | 40.0% |
CAAAGTTGTTTGAGAGAAGC+TGG | + | chr4_4:18782263-18782282 | Msa0672990:CDS | 40.0% | |
!! | AAGCTGGGCTTTGAAAAGAA+TGG | + | chr4_4:18782279-18782298 | Msa0672990:CDS | 40.0% |
ATGGTTGCAATGATGGTTCT+TGG | + | chr4_4:18782298-18782317 | Msa0672990:CDS | 40.0% | |
GCAATGATGGTTCTTGGTAT+TGG | + | chr4_4:18782304-18782323 | Msa0672990:CDS | 40.0% | |
TTTGGTATGCCTTTAGCAGT+TGG | + | chr4_4:18782343-18782362 | Msa0672990:CDS | 40.0% | |
TTGGTATGCCTTTAGCAGTT+GGG | + | chr4_4:18782344-18782363 | Msa0672990:CDS | 40.0% | |
CGTTGTGTTTAATGCCTTGA+TGG | + | chr4_4:18782393-18782412 | Msa0672990:CDS | 40.0% | |
! | CTTGCATTTTCAATAGCGAG+TGG | + | chr4_4:18782475-18782494 | Msa0672990:CDS | 40.0% |
! | ATGTGTGTTGTTGTTGGATC+AGG | + | chr4_4:18782511-18782530 | Msa0672990:CDS | 40.0% |
GGAGTACAAGGAATCAAAGT+TGG | + | chr4_4:18782532-18782551 | Msa0672990:CDS | 40.0% | |
ACAAGGAATCAAAGTTGGGT+TGG | + | chr4_4:18782537-18782556 | Msa0672990:CDS | 40.0% | |
CTCCCAGCAGATATCAAAAA+AGG | - | chr4_4:18782700-18782719 | None:intergenic | 40.0% | |
!!! | CTTTTTTGATATCTGCTGGG+AGG | + | chr4_4:18782698-18782717 | Msa0672990:CDS | 40.0% |
GTCTTCTCTTATGGTGTGTT+TGG | + | chr4_4:18782730-18782749 | Msa0672990:CDS | 40.0% | |
CTTCTCTTATGGTGTGTTTG+GGG | + | chr4_4:18782732-18782751 | Msa0672990:CDS | 40.0% | |
GACAAGAGAGCAAAAGAGTG+AGG | + | chr4_4:18776223-18776242 | Msa0672990:five_prime_UTR | 45.0% | |
ACATGTCGTCTTGTAAGCAG+TGG | + | chr4_4:18776754-18776773 | Msa0672990:intron | 45.0% | |
! | CGGAGCCAGCCAAAAAATTT+TGG | + | chr4_4:18776777-18776796 | Msa0672990:intron | 45.0% |
!!! | CCACCCCAAAATTTTTTGGC+TGG | - | chr4_4:18776785-18776804 | None:intergenic | 45.0% |
!! | CCAGCCAAAAAATTTTGGGG+TGG | + | chr4_4:18776782-18776801 | Msa0672990:intron | 45.0% |
!!! | TTTTCTCTGATGGCGGAATG+CGG | - | chr4_4:18776808-18776827 | None:intergenic | 45.0% |
AGGAGTGAGATTATGAGCTC+CGG | + | chr4_4:18777045-18777064 | Msa0672990:intron | 45.0% | |
TTGCCTTGTGGTTCAGATTG+GGG | - | chr4_4:18777368-18777387 | None:intergenic | 45.0% | |
!! | AAGGTACCTTAACTTGCCCA+TGG | + | chr4_4:18777454-18777473 | Msa0672990:intron | 45.0% |
GATATGGTCAGTGGACATTG+TGG | - | chr4_4:18777658-18777677 | None:intergenic | 45.0% | |
GGATCTTGCGGACATTGATA+TGG | - | chr4_4:18777674-18777693 | None:intergenic | 45.0% | |
!!! | TAGTGGCTTTTGGGTTGCAT+AGG | - | chr4_4:18777862-18777881 | None:intergenic | 45.0% |
GGCTCAAACTGAAGTAGAAG+AGG | + | chr4_4:18777991-18778010 | Msa0672990:intron | 45.0% | |
! | TGGATGGTTATGATTGGCCA+TGG | + | chr4_4:18778022-18778041 | Msa0672990:intron | 45.0% |
CGAAATAAATGGGTAGGCCA+TGG | + | chr4_4:18778092-18778111 | Msa0672990:intron | 45.0% | |
TCTCATCTTACAAGCAGAGG+CGG | - | chr4_4:18778141-18778160 | None:intergenic | 45.0% | |
ACCAGCTTAGCTAAGCTCAT+GGG | - | chr4_4:18780349-18780368 | None:intergenic | 45.0% | |
TACCAGCTTAGCTAAGCTCA+TGG | - | chr4_4:18780350-18780369 | None:intergenic | 45.0% | |
TGAGCTTAGCTAAGCTGGTA+AGG | + | chr4_4:18780350-18780369 | Msa0672990:intron | 45.0% | |
!!! | TTTTTTTTGGGTGGTGTCCG+AGG | - | chr4_4:18780411-18780430 | None:intergenic | 45.0% |
!! | CACACACTCTAAAGTTGCAC+GGG | - | chr4_4:18781288-18781307 | None:intergenic | 45.0% |
ATGCCATGTTGGGTAATCGT+CGG | - | chr4_4:18781531-18781550 | None:intergenic | 45.0% | |
GAATCTGTGCAATGCCATGT+TGG | - | chr4_4:18781542-18781561 | None:intergenic | 45.0% | |
TGTGCAAGTAGCTTCATCAC+AGG | + | chr4_4:18781665-18781684 | Msa0672990:CDS | 45.0% | |
! | CGGAAAAAGTTAGTACCGAG+TGG | + | chr4_4:18781918-18781937 | Msa0672990:CDS | 45.0% |
TTGTTACTGAGTCTCCAAGG+TGG | + | chr4_4:18782095-18782114 | Msa0672990:CDS | 45.0% | |
ACCCCCTAAACAAAAGGCTT+CGG | + | chr4_4:18782216-18782235 | Msa0672990:CDS | 45.0% | |
!! | ACCGAAGCCTTTTGTTTAGG+GGG | - | chr4_4:18782220-18782239 | None:intergenic | 45.0% |
CCTTTAGCAGTTGGGAACTT+GGG | + | chr4_4:18782352-18782371 | Msa0672990:CDS | 45.0% | |
CTTTAGCAGTTGGGAACTTG+GGG | + | chr4_4:18782353-18782372 | Msa0672990:CDS | 45.0% | |
CTTGGGGTTCGACATTTACT+TGG | + | chr4_4:18782369-18782388 | Msa0672990:CDS | 45.0% | |
! | GTTGTTGGATCAGGAGTACA+AGG | + | chr4_4:18782520-18782539 | Msa0672990:CDS | 45.0% |
! | AGTTGTTTCCGACAAGTGTG+AGG | + | chr4_4:18782620-18782639 | Msa0672990:CDS | 45.0% |
CTTGCTTTGCCAGAGACTAA+AGG | + | chr4_4:18782784-18782803 | Msa0672990:CDS | 45.0% | |
AGAGCTTGTCCTTTAGTCTC+TGG | - | chr4_4:18782796-18782815 | None:intergenic | 45.0% | |
!!! | AAAAAATTGAAATTTTTTTA+TGG | + | chr4_4:18776824-18776843 | Msa0672990:intron | 5.0% |
!! | TAAAAATATTTACTAATAAT+TGG | + | chr4_4:18777786-18777805 | Msa0672990:intron | 5.0% |
TGTCGTCTTGTAAGCAGTGG+CGG | + | chr4_4:18776757-18776776 | Msa0672990:intron | 50.0% | |
!!! | GCGGCCACCCCAAAATTTTT+TGG | - | chr4_4:18776789-18776808 | None:intergenic | 50.0% |
CTTGTGGTTCAGATTGGGGA+GGG | - | chr4_4:18777364-18777383 | None:intergenic | 50.0% | |
! | AGGGTACCATGGGCAAGTTA+AGG | - | chr4_4:18777463-18777482 | None:intergenic | 50.0% |
!! | TGAAACAGGGAGGGTACCAT+GGG | - | chr4_4:18777473-18777492 | None:intergenic | 50.0% |
GCGGACATTGATATGGTCAG+TGG | - | chr4_4:18777667-18777686 | None:intergenic | 50.0% | |
GAAGCAGCAACCAAAGAAGG+AGG | + | chr4_4:18777934-18777953 | Msa0672990:intron | 50.0% | |
GTCGTCCGATCTGAATTGTG+TGG | + | chr4_4:18779022-18779041 | Msa0672990:intron | 50.0% | |
ACGGCTGAGATGCAAAACAG+CGG | + | chr4_4:18779105-18779124 | Msa0672990:intron | 50.0% | |
!!! | ACAGCGTGCTTTTTTACGGC+AGG | + | chr4_4:18779131-18779150 | Msa0672990:intron | 50.0% |
!!! | CAGCGTGCTTTTTTACGGCA+GGG | + | chr4_4:18779132-18779151 | Msa0672990:intron | 50.0% |
TCCCATGAGCTTAGCTAAGC+TGG | + | chr4_4:18780345-18780364 | Msa0672990:intron | 50.0% | |
ACACCGACGATTACCCAACA+TGG | + | chr4_4:18781525-18781544 | Msa0672990:CDS | 50.0% | |
ACGAACGCCAGAATCCGATA+AGG | - | chr4_4:18781868-18781887 | None:intergenic | 50.0% | |
GGATTCTGGCGTTCGTCTAT+CGG | + | chr4_4:18781872-18781891 | Msa0672990:CDS | 50.0% | |
CCTTGCATTAGAAGCCACCT+TGG | - | chr4_4:18782112-18782131 | None:intergenic | 50.0% | |
CCAAGGTGGCTTCTAATGCA+AGG | + | chr4_4:18782109-18782128 | Msa0672990:CDS | 50.0% | |
GCCTTTAGCAGTTGGGAACT+TGG | + | chr4_4:18782351-18782370 | Msa0672990:CDS | 50.0% | |
CCCAAGTTCCCAACTGCTAA+AGG | - | chr4_4:18782355-18782374 | None:intergenic | 50.0% | |
GTCGTGTTCCTCACACTTGT+CGG | - | chr4_4:18782631-18782650 | None:intergenic | 50.0% | |
!! | TGGGGAGGGTACTCCAAGAA+AGG | - | chr4_4:18777350-18777369 | None:intergenic | 55.0% |
CCTTGTGGTTCAGATTGGGG+AGG | - | chr4_4:18777365-18777384 | None:intergenic | 55.0% | |
CCTCCCCAATCTGAACCACA+AGG | + | chr4_4:18777362-18777381 | Msa0672990:intron | 55.0% | |
!! | GTGAAACAGGGAGGGTACCA+TGG | - | chr4_4:18777474-18777493 | None:intergenic | 55.0% |
!! | CAGGGTGCTGTAACAGCACA+TGG | + | chr4_4:18779000-18779019 | Msa0672990:intron | 55.0% |
AAGGTCCGGGGTTCAAACCT+CGG | + | chr4_4:18780391-18780410 | Msa0672990:intron | 55.0% | |
TCCAACGGTGAACCTCCACT+CGG | - | chr4_4:18781936-18781955 | None:intergenic | 55.0% | |
GAGGAACACGACAACGTCGT+TGG | + | chr4_4:18782639-18782658 | Msa0672990:CDS | 55.0% | |
AGCTACACGAGGACTGGGGT+AGG | - | chr4_4:18778118-18778137 | None:intergenic | 60.0% | |
GGTGTCCGAGGTTTGAACCC+CGG | - | chr4_4:18780399-18780418 | None:intergenic | 60.0% | |
ACCGAGTGGAGGTTCACCGT+TGG | + | chr4_4:18781932-18781951 | Msa0672990:CDS | 60.0% | |
ACGAGGACTGGGGTAGGCCA+TGG | - | chr4_4:18778112-18778131 | None:intergenic | 65.0% | |
GCGGAGCTACACGAGGACTG+GGG | - | chr4_4:18778122-18778141 | None:intergenic | 65.0% | |
GGCGGAGCTACACGAGGACT+GGG | - | chr4_4:18778123-18778142 | None:intergenic | 65.0% | |
AGGCGGAGCTACACGAGGAC+TGG | - | chr4_4:18778124-18778143 | None:intergenic | 65.0% | |
AGCAGAGGCGGAGCTACACG+AGG | - | chr4_4:18778129-18778148 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 18776152 | 18782870 | 18776152 | ID=Msa0672990;Name=Msa0672990 |
chr4_4 | mRNA | 18776152 | 18782870 | 18776152 | ID=Msa0672990-mRNA-1;Parent=Msa0672990;Name=Msa0672990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|0|0.5|1|1|1|2|0|515 |
chr4_4 | exon | 18776152 | 18776386 | 18776152 | ID=Msa0672990-mRNA-1:exon:5409;Parent=Msa0672990-mRNA-1 |
chr4_4 | exon | 18781392 | 18782870 | 18781392 | ID=Msa0672990-mRNA-1:exon:5410;Parent=Msa0672990-mRNA-1 |
chr4_4 | five_prime_UTR | 18776152 | 18776317 | 18776152 | ID=Msa0672990-mRNA-1:five_prime_utr;Parent=Msa0672990-mRNA-1 |
chr4_4 | CDS | 18776318 | 18776386 | 18776318 | ID=Msa0672990-mRNA-1:cds;Parent=Msa0672990-mRNA-1 |
chr4_4 | CDS | 18781392 | 18782870 | 18781392 | ID=Msa0672990-mRNA-1:cds;Parent=Msa0672990-mRNA-1 |
Gene Sequence |
Protein sequence |