AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672990 MtrunA17_Chr4g0013591 97.065 511 15 0 1 511 1 511 0.0 1015
Msa0672990 MtrunA17_Chr4g0013581 82.745 510 81 2 1 509 1 504 0.0 865
Msa0672990 MtrunA17_Chr8g0353161 72.617 493 130 2 21 509 17 508 0.0 734
Msa0672990 MtrunA17_Chr8g0353141 71.514 502 138 2 16 513 12 512 0.0 733
Msa0672990 MtrunA17_Chr5g0435421 68.701 508 151 2 14 513 8 515 0.0 695
Msa0672990 MtrunA17_Chr5g0437201 68.164 512 144 4 17 509 11 522 0.0 687
Msa0672990 MtrunA17_Chr8g0356471 45.889 523 266 6 7 513 1 522 1.52e-168 486
Msa0672990 MtrunA17_Chr2g0319001 32.863 496 308 7 31 506 33 523 9.23e-80 258
Msa0672990 MtrunA17_Chr4g0067801 48.165 218 112 1 160 377 1 217 3.43e-67 216
Msa0672990 MtrunA17_Chr4g0042131 31.217 378 246 7 142 510 47 419 1.34e-46 167
Msa0672990 MtrunA17_Chr2g0319011 31.646 316 181 9 211 501 3 308 3.83e-30 120
Msa0672990 MtrunA17_Chr2g0319021 35.780 109 70 0 31 139 32 140 5.50e-21 89.4
Msa0672990 MtrunA17_Chr4g0042121 33.028 109 69 2 31 135 36 144 2.21e-16 76.3
Msa0672990 MtrunA17_Chr3g0144261 28.387 155 108 1 147 298 68 222 1.11e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672990 AT1G16390.1 48.330 509 256 4 7 508 1 509 4.28e-179 513
Msa0672990 AT1G79360.1 47.535 507 249 7 22 511 11 517 2.51e-174 502
Msa0672990 AT1G79410.1 43.836 511 280 7 7 512 1 509 7.35e-148 434
Msa0672990 AT1G16370.1 41.992 512 290 6 5 510 3 513 1.65e-144 426
Msa0672990 AT1G73220.1 38.163 490 288 5 31 510 46 530 1.34e-109 337
Msa0672990 AT3G20660.1 32.033 487 302 10 31 502 35 507 2.33e-73 242
Msa0672990 AT3G51490.3 29.545 176 110 3 133 298 3 174 1.29e-13 73.9
Msa0672990 AT3G51490.2 29.545 176 110 3 133 298 53 224 1.67e-13 73.6
Msa0672990 AT3G51490.1 29.545 176 110 3 133 298 53 224 1.70e-13 73.6
Msa0672990 AT1G20840.2 28.931 159 102 2 147 298 68 222 7.30e-12 68.6
Msa0672990 AT1G20840.1 28.931 159 102 2 147 298 68 222 7.30e-12 68.6

Find 91 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCATGACCATGAAGATTT+TGG 0.105653 4_4:-18781599 None:intergenic
GGAATTGGAATGGTTTATTT+TGG 0.195131 4_4:+18782325 Msa0672990:CDS
GTCTTCTCTTATGGTGTGTT+TGG 0.237738 4_4:+18782730 Msa0672990:CDS
GAAGCAATTGCAATGCTTAA+AGG 0.243155 4_4:+18782142 Msa0672990:CDS
TTCTTCATAGGTTGCCTAAT+TGG 0.243229 4_4:+18781704 Msa0672990:CDS
TTTAGATAATAGAGATATTA+AGG 0.249467 4_4:+18776279 Msa0672990:five_prime_UTR
TCAAATTCCTTATCGGATTC+TGG 0.249785 4_4:+18781858 Msa0672990:CDS
TAATATCTCTATTATCTAAA+TGG 0.256585 4_4:-18776276 None:intergenic
TCTTCTCTTATGGTGTGTTT+GGG 0.261634 4_4:+18782731 Msa0672990:CDS
TAAGCATTGCAATTGCTTCT+TGG 0.272991 4_4:-18782138 None:intergenic
TATTGTGCTTCGCAGGAAAA+AGG 0.282742 4_4:+18781377 Msa0672990:intron
TGATTCAACATGCAGATCTA+TGG 0.284386 4_4:+18776341 Msa0672990:CDS
AGGAATTCTCTGGTTGGATA+TGG 0.284539 4_4:+18776299 Msa0672990:exon
TTGTGTCGCTACTTATTTCT+TGG 0.296187 4_4:+18782426 Msa0672990:CDS
CCACAATCTTCATTCTTCAT+AGG 0.305982 4_4:+18781692 Msa0672990:CDS
GAGAGGAGTTTAGGAACATT+TGG 0.321972 4_4:+18781425 Msa0672990:CDS
GAAATGATAGAGAGGAGTTT+AGG 0.326647 4_4:+18781416 Msa0672990:CDS
TCGGCTTTCAAATTCCTTAT+CGG 0.326745 4_4:+18781851 Msa0672990:CDS
ATGGTTCTTGGTATTGGAAT+TGG 0.344101 4_4:+18782310 Msa0672990:CDS
GCAAAATCCCAAAATCTTCA+TGG 0.345391 4_4:+18781591 Msa0672990:CDS
GCCTTTAGCAGTTGGGAACT+TGG 0.358113 4_4:+18782351 Msa0672990:CDS
TGTGTTATGTGTGTTGTTGT+TGG 0.359401 4_4:+18782505 Msa0672990:CDS
AATTAAGAATGCTCAATAAA+AGG 0.363873 4_4:+18776192 Msa0672990:five_prime_UTR
ACAAGCTCTTTGTGATACTA+TGG 0.364002 4_4:+18782807 Msa0672990:CDS
CTTGGGGTTCGACATTTACT+TGG 0.365746 4_4:+18782369 Msa0672990:CDS
CCTTTAGCAGTTGGGAACTT+GGG 0.373404 4_4:+18782352 Msa0672990:CDS
GCTATAATTTACTCAATCAT+TGG 0.374272 4_4:+18782064 Msa0672990:CDS
ATGTGTGTTGTTGTTGGATC+AGG 0.394930 4_4:+18782511 Msa0672990:CDS
GCAATGATGGTTCTTGGTAT+TGG 0.397888 4_4:+18782304 Msa0672990:CDS
GTCGTGTTCCTCACACTTGT+CGG 0.398211 4_4:-18782628 None:intergenic
GAAAAGAATGGTTGCAATGA+TGG 0.411878 4_4:+18782291 Msa0672990:CDS
CAAAGTTGTTTGAGAGAAGC+TGG 0.418033 4_4:+18782263 Msa0672990:CDS
ATGGTTGCAATGATGGTTCT+TGG 0.423914 4_4:+18782298 Msa0672990:CDS
CGTTGTGTTTAATGCCTTGA+TGG 0.428301 4_4:+18782393 Msa0672990:CDS
ATTGAAAATGCAAGAATTGA+CGG 0.431608 4_4:-18782466 None:intergenic
GGAGTACAAGGAATCAAAGT+TGG 0.436137 4_4:+18782532 Msa0672990:CDS
TCCCAAAATCTTCATGGTCA+TGG 0.441703 4_4:+18781597 Msa0672990:CDS
CTAATGCAAAAGAACCAATT+AGG 0.442316 4_4:-18781718 None:intergenic
GTTGGATATGGCTTCTATTG+AGG 0.442730 4_4:+18776311 Msa0672990:exon
TTGGTATGCCTTTAGCAGTT+GGG 0.447418 4_4:+18782344 Msa0672990:CDS
GGATTCTGGCGTTCGTCTAT+CGG 0.451034 4_4:+18781872 Msa0672990:CDS
AGAGATATTAAGGAATTCTC+TGG 0.459597 4_4:+18776289 Msa0672990:five_prime_UTR
CTTGCTTTGCCAGAGACTAA+AGG 0.464667 4_4:+18782784 Msa0672990:CDS
AGAGCTTGTCCTTTAGTCTC+TGG 0.466490 4_4:-18782793 None:intergenic
GGAGTTTAGGAACATTTGGA+TGG 0.472134 4_4:+18781429 Msa0672990:CDS
CCCAAGTTCCCAACTGCTAA+AGG 0.474326 4_4:-18782352 None:intergenic
CCCAAAATCTTCATGGTCAT+GGG 0.481349 4_4:+18781598 Msa0672990:CDS
ACTTTAGCTGATACATCCCT+TGG 0.481619 4_4:+18781743 Msa0672990:CDS
ATGATTGAGTAAATTATAGC+TGG 0.481999 4_4:-18782061 None:intergenic
AGGTAGCAAGAGAGAATAAG+TGG 0.493452 4_4:+18776243 Msa0672990:five_prime_UTR
CTTTAGCAGTTGGGAACTTG+GGG 0.506109 4_4:+18782353 Msa0672990:CDS
TTTGGTATGCCTTTAGCAGT+TGG 0.508996 4_4:+18782343 Msa0672990:CDS
TCTATCATTTCATCTGATGA+AGG 0.520096 4_4:-18781404 None:intergenic
TCTTGGTATTGGAATTGGAA+TGG 0.520997 4_4:+18782315 Msa0672990:CDS
GTTGTTGGATCAGGAGTACA+AGG 0.526318 4_4:+18782520 Msa0672990:CDS
GAGTTTAGGAACATTTGGAT+GGG 0.530584 4_4:+18781430 Msa0672990:CDS
CCTTGCATTAGAAGCCACCT+TGG 0.540142 4_4:-18782109 None:intergenic
GAGTACAAGGAATCAAAGTT+GGG 0.541950 4_4:+18782533 Msa0672990:CDS
AACCAATGTTTGGATTTACT+CGG 0.542219 4_4:+18781832 Msa0672990:CDS
TCTTTGTTACTGAGTCTCCA+AGG 0.543866 4_4:+18782092 Msa0672990:CDS
ATATTAAGGAATTCTCTGGT+TGG 0.548943 4_4:+18776293 Msa0672990:five_prime_UTR
CTTCTCTTATGGTGTGTTTG+GGG 0.558622 4_4:+18782732 Msa0672990:CDS
AAGCTGGGCTTTGAAAAGAA+TGG 0.558840 4_4:+18782279 Msa0672990:CDS
AAATAAGTAGCGACACAAGA+TGG 0.560494 4_4:-18782421 None:intergenic
AATCTGTGCAATGCCATGTT+GGG 0.563621 4_4:-18781538 None:intergenic
AAAGTTGTTTGAGAGAAGCT+GGG 0.565151 4_4:+18782264 Msa0672990:CDS
GAGGGTGAAATTAATTATGA+AGG 0.575824 4_4:+18776154 Msa0672990:five_prime_UTR
ACAAGGAATCAAAGTTGGGT+TGG 0.576373 4_4:+18782537 Msa0672990:CDS
GAATCTGTGCAATGCCATGT+TGG 0.577316 4_4:-18781539 None:intergenic
TGAAAACACAATGATGATTG+AGG 0.578552 4_4:-18781810 None:intergenic
ACAAGATGGTATTTCCATCA+AGG 0.583132 4_4:-18782407 None:intergenic
AAATCTTCATGGTCATGGGA+TGG 0.583642 4_4:+18781602 Msa0672990:CDS
ACGAACGCCAGAATCCGATA+AGG 0.591447 4_4:-18781865 None:intergenic
TGCATTTAGCAACAAACTCG+CGG 0.597000 4_4:-18782194 None:intergenic
TGTGCAAGTAGCTTCATCAC+AGG 0.598967 4_4:+18781665 Msa0672990:CDS
ACCGAGTGGAGGTTCACCGT+TGG 0.604662 4_4:+18781932 Msa0672990:CDS
AGCCGAGTAAATCCAAACAT+TGG 0.608114 4_4:-18781834 None:intergenic
CATCAGATGAAATGATAGAG+AGG 0.609645 4_4:+18781408 Msa0672990:CDS
TTAGGGTACATGTCATTACC+TGG 0.614178 4_4:+18781980 Msa0672990:CDS
GAGGAACACGACAACGTCGT+TGG 0.615116 4_4:+18782639 Msa0672990:CDS
AAAATATTCAACAATTCCAA+CGG 0.619929 4_4:-18781948 None:intergenic
CCAAGGTGGCTTCTAATGCA+AGG 0.624152 4_4:+18782109 Msa0672990:CDS
GACAAGAGAGCAAAAGAGTG+AGG 0.630962 4_4:+18776223 Msa0672990:five_prime_UTR
AATGCTTAAAGGAATGAGCT+CGG 0.634915 4_4:+18782153 Msa0672990:CDS
AGTTGTTTCCGACAAGTGTG+AGG 0.640373 4_4:+18782620 Msa0672990:CDS
ACACCGACGATTACCCAACA+TGG 0.652539 4_4:+18781525 Msa0672990:CDS
TCCAACGGTGAACCTCCACT+CGG 0.659472 4_4:-18781933 None:intergenic
CCTATGAAGAATGAAGATTG+TGG 0.667133 4_4:-18781692 None:intergenic
TTGTTACTGAGTCTCCAAGG+TGG 0.676486 4_4:+18782095 Msa0672990:CDS
ATGCCATGTTGGGTAATCGT+CGG 0.699036 4_4:-18781528 None:intergenic
CATCAAGGCATTAAACACAA+CGG 0.710182 4_4:-18782392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAATTAT+TGG + chr4_4:18779374-18779393 Msa0672990:intron 0.0%
!!! ATTCTTATTGATATTTTAAA+AGG - chr4_4:18777144-18777163 None:intergenic 10.0%
!!! TTATTTTATTTTGTATTAAC+AGG - chr4_4:18777721-18777740 None:intergenic 10.0%
!! GTAAAAATAATGAAATATAT+TGG + chr4_4:18778348-18778367 Msa0672990:intron 10.0%
!!! TAAGAATATTTTGTTTTTTT+AGG + chr4_4:18778418-18778437 Msa0672990:intron 10.0%
!!! AAGAATATTTTGTTTTTTTA+GGG + chr4_4:18778419-18778438 Msa0672990:intron 10.0%
!!! TTTATGTATTTTTGATATTT+TGG + chr4_4:18778776-18778795 Msa0672990:intron 10.0%
!! GAACAAAATAAAATAAAATA+TGG - chr4_4:18779236-18779255 None:intergenic 10.0%
!!! TAACAAAAAAATGATTTTTT+AGG + chr4_4:18779453-18779472 Msa0672990:intron 10.0%
!! TAGTGAAAATATTAATTAAA+AGG + chr4_4:18779555-18779574 Msa0672990:intron 10.0%
!! AATTAATTATGAAGGAAAAA+AGG + chr4_4:18776162-18776181 Msa0672990:five_prime_UTR 15.0%
!! TAATATCTCTATTATCTAAA+TGG - chr4_4:18776279-18776298 None:intergenic 15.0%
!! TTTAGATAATAGAGATATTA+AGG + chr4_4:18776279-18776298 Msa0672990:five_prime_UTR 15.0%
!!! ATAGTTTTGCATTTTATATA+TGG - chr4_4:18776446-18776465 None:intergenic 15.0%
!! CTATCATTATGAAATAAAAT+AGG - chr4_4:18778302-18778321 None:intergenic 15.0%
!!! CTATTTTATTTCATAATGAT+AGG + chr4_4:18778300-18778319 Msa0672990:intron 15.0%
!!! AGTCAAAAAATTGAATATTT+TGG + chr4_4:18778393-18778412 Msa0672990:intron 15.0%
!!! AGAATATTTTGTTTTTTTAG+GGG + chr4_4:18778420-18778439 Msa0672990:intron 15.0%
!!! ATGATATATAGTTTTATGTA+TGG + chr4_4:18778553-18778572 Msa0672990:intron 15.0%
!!! GTCTCAAATAAAAATTATTT+TGG - chr4_4:18778582-18778601 None:intergenic 15.0%
!!! TTTTTCATGTTGAAAATAAA+AGG + chr4_4:18778749-18778768 Msa0672990:intron 15.0%
!! AAAAAAAAAAAGAAGAAGAT+TGG - chr4_4:18778856-18778875 None:intergenic 15.0%
!! ACAATTAATGAATATGAATA+GGG - chr4_4:18779342-18779361 None:intergenic 15.0%
!! TACAATTAATGAATATGAAT+AGG - chr4_4:18779343-18779362 None:intergenic 15.0%
!!! CTTTATTTTACATGAATTAT+TGG + chr4_4:18779398-18779417 Msa0672990:intron 15.0%
!! AAAAACTAAAAATGACTAAT+TGG - chr4_4:18779609-18779628 None:intergenic 15.0%
!!! TCATTTTTAGTTTTTAAACA+GGG + chr4_4:18779614-18779633 Msa0672990:intron 15.0%
!! AATAAAGTTGAATGAAAAAA+TGG - chr4_4:18779701-18779720 None:intergenic 15.0%
!!! AATATGTTTTCTTGTTATTT+AGG + chr4_4:18779734-18779753 Msa0672990:intron 15.0%
!! TTAAATGTATCTAAGTAATA+AGG - chr4_4:18779793-18779812 None:intergenic 15.0%
!! TATGAAATTAATATCGAATT+AGG - chr4_4:18779828-18779847 None:intergenic 15.0%
!!! ACTCATTTTTTATTACATTT+TGG + chr4_4:18779947-18779966 Msa0672990:intron 15.0%
!!! CTCATTTTTTATTACATTTT+GGG + chr4_4:18779948-18779967 Msa0672990:intron 15.0%
!!! GCATATATTTTATCATTTAA+AGG + chr4_4:18780154-18780173 Msa0672990:intron 15.0%
!!! TTGGTTTTTTAGTTTAAAAT+TGG - chr4_4:18780211-18780230 None:intergenic 15.0%
!! TTTAAACTAAAAAACCAAAA+AGG + chr4_4:18780213-18780232 Msa0672990:intron 15.0%
!!! TTATATTAGATTAACCTTTT+TGG - chr4_4:18780230-18780249 None:intergenic 15.0%
!!! TTCCACTATATTTTTTTTTT+GGG - chr4_4:18780423-18780442 None:intergenic 15.0%
!!! ATTCCACTATATTTTTTTTT+TGG - chr4_4:18780424-18780443 None:intergenic 15.0%
!!! AAATTACAAAGGTATAATTA+AGG + chr4_4:18781163-18781182 Msa0672990:intron 15.0%
!! AAACCAAATAAATAGTTTAA+GGG + chr4_4:18781223-18781242 Msa0672990:intron 15.0%
!! AATTAAGAATGCTCAATAAA+AGG + chr4_4:18776192-18776211 Msa0672990:five_prime_UTR 20.0%
!!! AATTTCAATTTTTTCTCTGA+TGG - chr4_4:18776818-18776837 None:intergenic 20.0%
!!! AATGAATTTGATTTGTGATT+TGG - chr4_4:18776900-18776919 None:intergenic 20.0%
!!! TTTTTTTAGATCAACATAGT+TGG - chr4_4:18776954-18776973 None:intergenic 20.0%
!!! AAGGATTAGTAATATCAATT+AGG + chr4_4:18777109-18777128 Msa0672990:intron 20.0%
!!! CATTCATGTACTTTAAATTT+TGG - chr4_4:18777243-18777262 None:intergenic 20.0%
!! CTTGTAAACTTACTTATATT+TGG - chr4_4:18777437-18777456 None:intergenic 20.0%
!! CAAATATAAGTAAGTTTACA+AGG + chr4_4:18777435-18777454 Msa0672990:intron 20.0%
!!! TGTATAAGATATGTTGATTT+GGG - chr4_4:18777513-18777532 None:intergenic 20.0%
!! CATATAATGAACTATGTAAA+GGG + chr4_4:18777611-18777630 Msa0672990:intron 20.0%
!! AATAATATTGAGATTACCTT+AGG + chr4_4:18778051-18778070 Msa0672990:intron 20.0%
!! ATAATATTGAGATTACCTTA+GGG + chr4_4:18778052-18778071 Msa0672990:intron 20.0%
!!! TTTTATTTCATAATGATAGG+TGG + chr4_4:18778303-18778322 Msa0672990:intron 20.0%
!! TGGTACTATATGAATTATTT+AGG + chr4_4:18778368-18778387 Msa0672990:intron 20.0%
!!! TAGTATGTTTTTGCTTTTAA+CGG + chr4_4:18778905-18778924 Msa0672990:intron 20.0%
!! CATTAAATAATGAGTATACT+TGG + chr4_4:18779478-18779497 Msa0672990:intron 20.0%
!! AGTTTAGTTATTATGCTTAT+TGG - chr4_4:18779517-18779536 None:intergenic 20.0%
!!! GTCATTTTTAGTTTTTAAAC+AGG + chr4_4:18779613-18779632 Msa0672990:intron 20.0%
!!! TCAATTTTTGCTTACATTTT+GGG - chr4_4:18779869-18779888 None:intergenic 20.0%
!!! ATCAATTTTTGCTTACATTT+TGG - chr4_4:18779870-18779889 None:intergenic 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + chr4_4:18779889-18779908 Msa0672990:intron 20.0%
!!! TTTAGGTTTAATTACTCTTT+TGG + chr4_4:18780947-18780966 Msa0672990:intron 20.0%
!! AGTAAAAGAGATAAGATTAA+GGG - chr4_4:18781029-18781048 None:intergenic 20.0%
!! TATTTAACCCCAAATAATTA+AGG + chr4_4:18781071-18781090 Msa0672990:intron 20.0%
!!! TGTTTCTACTTAAATTACAA+AGG + chr4_4:18781152-18781171 Msa0672990:intron 20.0%
!! GAAACCAAATAAATAGTTTA+AGG + chr4_4:18781222-18781241 Msa0672990:intron 20.0%
!! TTACCCTTAAACTATTTATT+TGG - chr4_4:18781229-18781248 None:intergenic 20.0%
!! AAAAAACAATCATATCTCAA+TGG + chr4_4:18781633-18781652 Msa0672990:CDS 20.0%
!! AAAATATTCAACAATTCCAA+CGG - chr4_4:18781951-18781970 None:intergenic 20.0%
!!! AATATTTTTGCTTCACATTA+GGG + chr4_4:18781963-18781982 Msa0672990:CDS 20.0%
!!! CTTAAAATCTTGTTTTGCTT+TGG + chr4_4:18776517-18776536 Msa0672990:intron 25.0%
! TAATAAGAACATAACATGAG+AGG - chr4_4:18776574-18776593 None:intergenic 25.0%
!! TTGATTGAGAACTTTTTGTA+TGG - chr4_4:18776642-18776661 None:intergenic 25.0%
! AATTACTGGACAAGTTTATA+AGG + chr4_4:18777090-18777109 Msa0672990:intron 25.0%
! TATCAATAAGAATTGCAAAC+TGG + chr4_4:18777151-18777170 Msa0672990:intron 25.0%
! ATCAATAAGAATTGCAAACT+GGG + chr4_4:18777152-18777171 Msa0672990:intron 25.0%
! AACAAAATCTGTAGCAATAA+TGG + chr4_4:18777193-18777212 Msa0672990:intron 25.0%
!!! GTATAAGATATGTTGATTTG+GGG - chr4_4:18777512-18777531 None:intergenic 25.0%
!! CTGTATAAGATATGTTGATT+TGG - chr4_4:18777514-18777533 None:intergenic 25.0%
! CCTTTACATAGTTCATTATA+TGG - chr4_4:18777613-18777632 None:intergenic 25.0%
! CCATATAATGAACTATGTAA+AGG + chr4_4:18777610-18777629 Msa0672990:intron 25.0%
! TCAATATTATTATCATGCCA+TGG - chr4_4:18778042-18778061 None:intergenic 25.0%
! TAATATTGAGATTACCTTAG+GGG + chr4_4:18778053-18778072 Msa0672990:intron 25.0%
!! TAGTCTTTTCACGAAATAAA+TGG + chr4_4:18778081-18778100 Msa0672990:intron 25.0%
!! AGTCTTTTCACGAAATAAAT+GGG + chr4_4:18778082-18778101 Msa0672990:intron 25.0%
!!! GTTTTTTGTTTTTGCACAAA+AGG - chr4_4:18778270-18778289 None:intergenic 25.0%
!!! ATATTTTGTTTTTTTAGGGG+AGG + chr4_4:18778423-18778442 Msa0672990:intron 25.0%
!! AGGTGCAATAAATTCTTTTA+TGG + chr4_4:18778443-18778462 Msa0672990:intron 25.0%
! ATGAGAATACATAACTGTAT+TGG + chr4_4:18778661-18778680 Msa0672990:intron 25.0%
! TTGTCTTATGGTTTAGATAT+TGG + chr4_4:18778814-18778833 Msa0672990:intron 25.0%
! AGTGCATGATTTATTATCAA+CGG + chr4_4:18779086-18779105 Msa0672990:intron 25.0%
! AATTATCAACATTCCTTTGT+TGG - chr4_4:18779190-18779209 None:intergenic 25.0%
! TTCCAACATTTATACTCTTA+TGG + chr4_4:18779253-18779272 Msa0672990:intron 25.0%
! ATACTCTTATGGTGTATATA+TGG + chr4_4:18779264-18779283 Msa0672990:intron 25.0%
!!! ATGTTTTCTTGTTATTTAGG+TGG + chr4_4:18779737-18779756 Msa0672990:intron 25.0%
! TGTATCTAAGTAATAAGGTT+CGG - chr4_4:18779788-18779807 None:intergenic 25.0%
! GCAAAAGATTATTGTTAAGT+TGG - chr4_4:18780093-18780112 None:intergenic 25.0%
! TGGTCATTTATGTTAGTAAA+GGG - chr4_4:18780191-18780210 None:intergenic 25.0%
! TTGGTCATTTATGTTAGTAA+AGG - chr4_4:18780192-18780211 None:intergenic 25.0%
! TTCAGTATGTCAAAATATAG+TGG + chr4_4:18780316-18780335 Msa0672990:intron 25.0%
! GACAATACATATTATATGCA+AGG + chr4_4:18780372-18780391 Msa0672990:intron 25.0%
!!! CACTATATTTTTTTTTTGGG+TGG - chr4_4:18780420-18780439 None:intergenic 25.0%
! CACCCAAAAAAAAAATATAG+TGG + chr4_4:18780418-18780437 Msa0672990:intron 25.0%
!! AAACTTCCTTCTCTTTTATA+CGG - chr4_4:18780462-18780481 None:intergenic 25.0%
! AAGTATTTAAACACACAATC+TGG + chr4_4:18780493-18780512 Msa0672990:intron 25.0%
! AGAATATAATGTGAGTATGA+GGG - chr4_4:18780710-18780729 None:intergenic 25.0%
! AAGAATATAATGTGAGTATG+AGG - chr4_4:18780711-18780730 None:intergenic 25.0%
!! TTCATTTTCTCTCTTTTCAT+TGG - chr4_4:18780774-18780793 None:intergenic 25.0%
!! TGATATATGGACAATCATTT+TGG - chr4_4:18780815-18780834 None:intergenic 25.0%
!!! TTTTAGTTTCGTTTTCTTGT+TGG - chr4_4:18780866-18780885 None:intergenic 25.0%
! CCTAAATAGACAAAATTGTA+GGG - chr4_4:18780933-18780952 None:intergenic 25.0%
! ACCTAAATAGACAAAATTGT+AGG - chr4_4:18780934-18780953 None:intergenic 25.0%
! GAGTAAAAGAGATAAGATTA+AGG - chr4_4:18781030-18781049 None:intergenic 25.0%
!! CTTATCTCTTTTACTCAAAT+AGG + chr4_4:18781034-18781053 Msa0672990:intron 25.0%
! TTAGTCCACCTTAATTATTT+GGG - chr4_4:18781082-18781101 None:intergenic 25.0%
!! CATTTGAGGTTAAATATTGA+CGG + chr4_4:18781127-18781146 Msa0672990:intron 25.0%
!!! GATATGATTGTTTTTTGTGA+TGG - chr4_4:18781629-18781648 None:intergenic 25.0%
!!! ATGTGTTCTTGTTTTGTTAA+CGG + chr4_4:18781898-18781917 Msa0672990:CDS 25.0%
!!! GAATATTTTTGCTTCACATT+AGG + chr4_4:18781962-18781981 Msa0672990:CDS 25.0%
! ATGATTGAGTAAATTATAGC+TGG - chr4_4:18782064-18782083 None:intergenic 25.0%
! GCTATAATTTACTCAATCAT+TGG + chr4_4:18782064-18782083 Msa0672990:CDS 25.0%
! ATTGAAAATGCAAGAATTGA+CGG - chr4_4:18782469-18782488 None:intergenic 25.0%
! AAAAATGATGTCTTCTCTTA+TGG + chr4_4:18782721-18782740 Msa0672990:CDS 25.0%
GAGGGTGAAATTAATTATGA+AGG + chr4_4:18776154-18776173 Msa0672990:five_prime_UTR 30.0%
AGAGATATTAAGGAATTCTC+TGG + chr4_4:18776289-18776308 Msa0672990:five_prime_UTR 30.0%
ATATTAAGGAATTCTCTGGT+TGG + chr4_4:18776293-18776312 Msa0672990:five_prime_UTR 30.0%
TCACAAAGTATGAAAGGAAA+GGG - chr4_4:18776545-18776564 None:intergenic 30.0%
TTCACAAAGTATGAAAGGAA+AGG - chr4_4:18776546-18776565 None:intergenic 30.0%
AGGAATTCACAAAGTATGAA+AGG - chr4_4:18776551-18776570 None:intergenic 30.0%
!!! TTCAATTTTTTCTCTGATGG+CGG - chr4_4:18776815-18776834 None:intergenic 30.0%
!! GTTGGTGAATTTTTGTCATT+AGG - chr4_4:18776936-18776955 None:intergenic 30.0%
TTGATCTAAAAAAAGCAGCT+AGG + chr4_4:18776960-18776979 Msa0672990:intron 30.0%
! GATGAAGTTGATTTAGAAGA+TGG + chr4_4:18776986-18777005 Msa0672990:intron 30.0%
! AATCACTTGAGTTTTTGTTC+CGG - chr4_4:18777067-18777086 None:intergenic 30.0%
CTCAAGTGATTAGTAATTAC+TGG + chr4_4:18777076-18777095 Msa0672990:intron 30.0%
GAAAGTAAAGCTGCAAAATA+AGG + chr4_4:18777288-18777307 Msa0672990:intron 30.0%
! CAAACATTTTTGACCTTTCT+TGG + chr4_4:18777334-18777353 Msa0672990:intron 30.0%
!!! ATGAGAATTTTTTTGCCTTG+TGG - chr4_4:18777380-18777399 None:intergenic 30.0%
ATTGTCCATCATCAAATACA+TGG + chr4_4:18777402-18777421 Msa0672990:intron 30.0%
ATGTTATGTCAAGTGAAACA+GGG - chr4_4:18777486-18777505 None:intergenic 30.0%
TATGTTATGTCAAGTGAAAC+AGG - chr4_4:18777487-18777506 None:intergenic 30.0%
TGTTTCACTTGACATAACAT+AGG + chr4_4:18777486-18777505 Msa0672990:intron 30.0%
CAGTTATGCTAATCATATCA+AGG + chr4_4:18777531-18777550 Msa0672990:intron 30.0%
ATAATCACAGTCAGATTTGT+TGG + chr4_4:18777761-18777780 Msa0672990:intron 30.0%
TAATAATTGGCCACTACTTT+AGG + chr4_4:18777799-18777818 Msa0672990:intron 30.0%
ATTCTGATTACCTAAAGTAG+TGG - chr4_4:18777812-18777831 None:intergenic 30.0%
CTACTTTAGGTAATCAGAAT+CGG + chr4_4:18777812-18777831 Msa0672990:intron 30.0%
GAAGAGGAAAATAAGTAACA+CGG + chr4_4:18777970-18777989 Msa0672990:intron 30.0%
AAGTAGAAGAGGAAAATACA+TGG + chr4_4:18778002-18778021 Msa0672990:intron 30.0%
AATACATGGATGGTTATGAT+TGG + chr4_4:18778016-18778035 Msa0672990:intron 30.0%
AAAAGACTATAATACCCCTA+AGG - chr4_4:18778070-18778089 None:intergenic 30.0%
! TTTTCACGAAATAAATGGGT+AGG + chr4_4:18778086-18778105 Msa0672990:intron 30.0%
! GTTTTTGCACAAAAGGATAT+AGG - chr4_4:18778263-18778282 None:intergenic 30.0%
AAAAGTTGCATGTTGTCTTA+TGG + chr4_4:18778802-18778821 Msa0672990:intron 30.0%
TTAAGTGTTTAGAGATGTGA+TGG + chr4_4:18778945-18778964 Msa0672990:intron 30.0%
TAAGTGTTTAGAGATGTGAT+GGG + chr4_4:18778946-18778965 Msa0672990:intron 30.0%
CTGTAACTATATTTACAGCA+GGG - chr4_4:18778980-18778999 None:intergenic 30.0%
CTGTAAATATAGTTACAGCA+GGG + chr4_4:18778982-18779001 Msa0672990:intron 30.0%
ATTGTGTGGTTAAGATGATT+TGG + chr4_4:18779036-18779055 Msa0672990:intron 30.0%
AAGACATCATTATCACATCT+CGG - chr4_4:18779167-18779186 None:intergenic 30.0%
ATAATGATGTCTTCCAACAA+AGG + chr4_4:18779174-18779193 Msa0672990:intron 30.0%
! CACCATAAGAGTATAAATGT+TGG - chr4_4:18779258-18779277 None:intergenic 30.0%
ATGGTGTATATATGGAGAAT+TGG + chr4_4:18779272-18779291 Msa0672990:intron 30.0%
!! TTTTTGCTTACATTTTGGGA+TGG - chr4_4:18779865-18779884 None:intergenic 30.0%
!! TCAACATAAGTTGATGTATC+TGG - chr4_4:18779928-18779947 None:intergenic 30.0%
!!! TTTATTACATTTTGGGACAG+AGG + chr4_4:18779955-18779974 Msa0672990:intron 30.0%
!!! CATTTTGAGAGCATTCAATT+TGG + chr4_4:18780062-18780081 Msa0672990:intron 30.0%
!! AAGATTATTGTTAAGTTGGC+AGG - chr4_4:18780089-18780108 None:intergenic 30.0%
GGTCATTTATGTTAGTAAAG+GGG - chr4_4:18780190-18780209 None:intergenic 30.0%
TACATATTATATGCAAGGTC+CGG + chr4_4:18780377-18780396 Msa0672990:intron 30.0%
! GTTTTTCCGTATAAAAGAGA+AGG + chr4_4:18780453-18780472 Msa0672990:intron 30.0%
TGTGAAAGAGTAGTGATATA+TGG - chr4_4:18780828-18780847 None:intergenic 30.0%
! CCCTACAATTTTGTCTATTT+AGG + chr4_4:18780930-18780949 Msa0672990:intron 30.0%
TTAACCCCAAATAATTAAGG+TGG + chr4_4:18781074-18781093 Msa0672990:intron 30.0%
TAGTCCACCTTAATTATTTG+GGG - chr4_4:18781081-18781100 None:intergenic 30.0%
GTTAGTCCACCTTAATTATT+TGG - chr4_4:18781083-18781102 None:intergenic 30.0%
!!! TTAAGGTGGACTAACATTTT+AGG + chr4_4:18781088-18781107 Msa0672990:intron 30.0%
TTTCACTTTAGACACATTTG+AGG + chr4_4:18781113-18781132 Msa0672990:intron 30.0%
GGTATAATTAAGGATCCAAA+CGG + chr4_4:18781173-18781192 Msa0672990:intron 30.0%
! AAATTTTTATTGTGCTTCGC+AGG + chr4_4:18781370-18781389 Msa0672990:intron 30.0%
TCTATCATTTCATCTGATGA+AGG - chr4_4:18781407-18781426 None:intergenic 30.0%
CTAATGCAAAAGAACCAATT+AGG - chr4_4:18781721-18781740 None:intergenic 30.0%
!!! CAACATGTTTTTTCTTCCAA+GGG - chr4_4:18781762-18781781 None:intergenic 30.0%
!!! TCAACATGTTTTTTCTTCCA+AGG - chr4_4:18781763-18781782 None:intergenic 30.0%
TGAAAACACAATGATGATTG+AGG - chr4_4:18781813-18781832 None:intergenic 30.0%
! TTGTGTTTTCAACCAATGTT+TGG + chr4_4:18781822-18781841 Msa0672990:CDS 30.0%
AACCAATGTTTGGATTTACT+CGG + chr4_4:18781832-18781851 Msa0672990:CDS 30.0%
!! ATGTTTTTCGATTTTCATCG+TGG + chr4_4:18782011-18782030 Msa0672990:CDS 30.0%
CGTGGAAAAATGTTTACATT+TGG + chr4_4:18782029-18782048 Msa0672990:CDS 30.0%
! GGAATTGGAATGGTTTATTT+TGG + chr4_4:18782325-18782344 Msa0672990:CDS 30.0%
!!! ATCGTTTTTTAGTGCTACTA+CGG + chr4_4:18782567-18782586 Msa0672990:CDS 30.0%
TGATTCAACATGCAGATCTA+TGG + chr4_4:18776341-18776360 Msa0672990:CDS 35.0%
TAAGAACATAACATGAGAGG+AGG - chr4_4:18776571-18776590 None:intergenic 35.0%
AGTTCTCAATCAATCTAACG+TGG + chr4_4:18776649-18776668 Msa0672990:intron 35.0%
GAAGATGGTCTTCAAAAACA+AGG + chr4_4:18777001-18777020 Msa0672990:intron 35.0%
! GGTGTTGAATTAACCAAAGA+AGG + chr4_4:18777025-18777044 Msa0672990:intron 35.0%
TCATAATCTCACTCCTTCTT+TGG - chr4_4:18777041-18777060 None:intergenic 35.0%
AGTACATGAATGAGAATCTG+AGG + chr4_4:18777251-18777270 Msa0672990:intron 35.0%
GTACATGAATGAGAATCTGA+GGG + chr4_4:18777252-18777271 Msa0672990:intron 35.0%
TCCATCATCAAATACATGGA+TGG + chr4_4:18777406-18777425 Msa0672990:intron 35.0%
TCCATCCATGTATTTGATGA+TGG - chr4_4:18777410-18777429 None:intergenic 35.0%
TAACAGGTTTATGAGCTAGT+AGG - chr4_4:18777705-18777724 None:intergenic 35.0%
ATCTGACTGTGATTATGTGA+AGG - chr4_4:18777757-18777776 None:intergenic 35.0%
ATCGGTATCAGATGTAAAAC+AGG + chr4_4:18777830-18777849 Msa0672990:intron 35.0%
! AAGAATGAGTAGTGGCTTTT+GGG - chr4_4:18777871-18777890 None:intergenic 35.0%
! TAAGAATGAGTAGTGGCTTT+TGG - chr4_4:18777872-18777891 None:intergenic 35.0%
TCCATCATAAGAATGAGTAG+TGG - chr4_4:18777879-18777898 None:intergenic 35.0%
! CATTCTTATGATGGAGTTTC+AGG + chr4_4:18777884-18777903 Msa0672990:intron 35.0%
TTCAAACTTTCCTCCTTCTT+TGG - chr4_4:18777947-18777966 None:intergenic 35.0%
! AGGAAAGTTTGAAGTAGAAG+AGG + chr4_4:18777954-18777973 Msa0672990:intron 35.0%
AGAAGAGGAAAATACATGGA+TGG + chr4_4:18778006-18778025 Msa0672990:intron 35.0%
ATTTCTCATCTTACAAGCAG+AGG - chr4_4:18778144-18778163 None:intergenic 35.0%
GCTGTAACTATATTTACAGC+AGG - chr4_4:18778981-18779000 None:intergenic 35.0%
GCTGTAAATATAGTTACAGC+AGG + chr4_4:18778981-18779000 Msa0672990:intron 35.0%
CTTAACCACACAATTCAGAT+CGG - chr4_4:18779030-18779049 None:intergenic 35.0%
!!! GTAAACAGCGTGCTTTTTTA+CGG + chr4_4:18779127-18779146 Msa0672990:intron 35.0%
AGACATCATTATCACATCTC+GGG - chr4_4:18779166-18779185 None:intergenic 35.0%
TAGGTGGAAGATCCTATAAA+TGG + chr4_4:18779753-18779772 Msa0672990:intron 35.0%
! GGATTTTGGATGACTTCAAT+AGG - chr4_4:18780287-18780306 None:intergenic 35.0%
! CTGAAAGCAAAGTTGGATTT+TGG - chr4_4:18780301-18780320 None:intergenic 35.0%
TGACATACTGAAAGCAAAGT+TGG - chr4_4:18780308-18780327 None:intergenic 35.0%
ACATATTATATGCAAGGTCC+GGG + chr4_4:18780378-18780397 Msa0672990:intron 35.0%
AACAATAGAGAGAGAGAGAA+AGG - chr4_4:18780746-18780765 None:intergenic 35.0%
! TCTCTCTCTCTCTATTGTTT+TGG + chr4_4:18780747-18780766 Msa0672990:intron 35.0%
TCTTTCACAAAAGTGAGCAT+AGG + chr4_4:18780839-18780858 Msa0672990:intron 35.0%
ATAGACAAAATTGTAGGGTG+TGG - chr4_4:18780928-18780947 None:intergenic 35.0%
! TTTACTAGTTTCGTTCCGTT+TGG - chr4_4:18781191-18781210 None:intergenic 35.0%
AACGGAACGAAACTAGTAAA+AGG + chr4_4:18781191-18781210 Msa0672990:intron 35.0%
CATCAGATGAAATGATAGAG+AGG + chr4_4:18781408-18781427 Msa0672990:CDS 35.0%
GAAATGATAGAGAGGAGTTT+AGG + chr4_4:18781416-18781435 Msa0672990:CDS 35.0%
GAGTTTAGGAACATTTGGAT+GGG + chr4_4:18781430-18781449 Msa0672990:CDS 35.0%
GCAAAATCCCAAAATCTTCA+TGG + chr4_4:18781591-18781610 Msa0672990:CDS 35.0%
CCTATGAAGAATGAAGATTG+TGG - chr4_4:18781695-18781714 None:intergenic 35.0%
CCACAATCTTCATTCTTCAT+AGG + chr4_4:18781692-18781711 Msa0672990:CDS 35.0%
TTCTTCATAGGTTGCCTAAT+TGG + chr4_4:18781704-18781723 Msa0672990:CDS 35.0%
TCGGCTTTCAAATTCCTTAT+CGG + chr4_4:18781851-18781870 Msa0672990:CDS 35.0%
TCAAATTCCTTATCGGATTC+TGG + chr4_4:18781858-18781877 Msa0672990:CDS 35.0%
! TAAGCATTGCAATTGCTTCT+TGG - chr4_4:18782141-18782160 None:intergenic 35.0%
GAAGCAATTGCAATGCTTAA+AGG + chr4_4:18782142-18782161 Msa0672990:CDS 35.0%
AATGCTTAAAGGAATGAGCT+CGG + chr4_4:18782153-18782172 Msa0672990:CDS 35.0%
!! AAACCGAAGCCTTTTGTTTA+GGG - chr4_4:18782222-18782241 None:intergenic 35.0%
!! AAAACCGAAGCCTTTTGTTT+AGG - chr4_4:18782223-18782242 None:intergenic 35.0%
AAAGTTGTTTGAGAGAAGCT+GGG + chr4_4:18782264-18782283 Msa0672990:CDS 35.0%
GAAAAGAATGGTTGCAATGA+TGG + chr4_4:18782291-18782310 Msa0672990:CDS 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG + chr4_4:18782310-18782329 Msa0672990:CDS 35.0%
! TCTTGGTATTGGAATTGGAA+TGG + chr4_4:18782315-18782334 Msa0672990:CDS 35.0%
! CATCAAGGCATTAAACACAA+CGG - chr4_4:18782395-18782414 None:intergenic 35.0%
ACAAGATGGTATTTCCATCA+AGG - chr4_4:18782410-18782429 None:intergenic 35.0%
AAATAAGTAGCGACACAAGA+TGG - chr4_4:18782424-18782443 None:intergenic 35.0%
! TTGTGTCGCTACTTATTTCT+TGG + chr4_4:18782426-18782445 Msa0672990:CDS 35.0%
! TGTGTTATGTGTGTTGTTGT+TGG + chr4_4:18782505-18782524 Msa0672990:CDS 35.0%
GAGTACAAGGAATCAAAGTT+GGG + chr4_4:18782533-18782552 Msa0672990:CDS 35.0%
! GTGAGACAAGCTATTGTTTT+CGG + chr4_4:18782661-18782680 Msa0672990:CDS 35.0%
!!! AGTCCTTTTTTGATATCTGC+TGG + chr4_4:18782694-18782713 Msa0672990:CDS 35.0%
!!! GTCCTTTTTTGATATCTGCT+GGG + chr4_4:18782695-18782714 Msa0672990:CDS 35.0%
TCTTCTCTTATGGTGTGTTT+GGG + chr4_4:18782731-18782750 Msa0672990:CDS 35.0%
ACAAGCTCTTTGTGATACTA+TGG + chr4_4:18782807-18782826 Msa0672990:CDS 35.0%
AGGTAGCAAGAGAGAATAAG+TGG + chr4_4:18776243-18776262 Msa0672990:five_prime_UTR 40.0%
AGGAATTCTCTGGTTGGATA+TGG + chr4_4:18776299-18776318 Msa0672990:exon 40.0%
GTTGGATATGGCTTCTATTG+AGG + chr4_4:18776311-18776330 Msa0672990:exon 40.0%
TGCTTACAAGACGACATGTA+AGG - chr4_4:18776753-18776772 None:intergenic 40.0%
! GGAGCCAGCCAAAAAATTTT+GGG + chr4_4:18776778-18776797 Msa0672990:intron 40.0%
! GAGCCAGCCAAAAAATTTTG+GGG + chr4_4:18776779-18776798 Msa0672990:intron 40.0%
GATGGTCTTCAAAAACAAGG+TGG + chr4_4:18777004-18777023 Msa0672990:intron 40.0%
TTTGCCTTGTGGTTCAGATT+GGG - chr4_4:18777369-18777388 None:intergenic 40.0%
! TTTTGCCTTGTGGTTCAGAT+TGG - chr4_4:18777370-18777389 None:intergenic 40.0%
TATGTCAAGTGAAACAGGGA+GGG - chr4_4:18777482-18777501 None:intergenic 40.0%
TTATGTCAAGTGAAACAGGG+AGG - chr4_4:18777483-18777502 None:intergenic 40.0%
!! TAGGAGAATGATGGATCTTG+CGG - chr4_4:18777686-18777705 None:intergenic 40.0%
ATGAGCTAGTAGGAGAATGA+TGG - chr4_4:18777695-18777714 None:intergenic 40.0%
GCCACTACTCATTCTTATGA+TGG + chr4_4:18777875-18777894 Msa0672990:intron 40.0%
! TCTTATGATGGAGTTTCAGG+TGG + chr4_4:18777887-18777906 Msa0672990:intron 40.0%
!! TTGCTGCTTCATTTTCTCTC+AGG - chr4_4:18777924-18777943 None:intergenic 40.0%
AATGAAGCAGCAACCAAAGA+AGG + chr4_4:18777931-18777950 Msa0672990:intron 40.0%
! GTTTAGAGATGTGATGGGAT+TGG + chr4_4:18778951-18778970 Msa0672990:intron 40.0%
!! CGGTGTCATAGACCATTTAT+AGG - chr4_4:18779768-18779787 None:intergenic 40.0%
!!! TGCTTACATTTTGGGATGGA+GGG - chr4_4:18779861-18779880 None:intergenic 40.0%
!!! TTGCTTACATTTTGGGATGG+AGG - chr4_4:18779862-18779881 None:intergenic 40.0%
AATAGGTCATATGCATCACG+AGG - chr4_4:18780270-18780289 None:intergenic 40.0%
CATATTATATGCAAGGTCCG+GGG + chr4_4:18780379-18780398 Msa0672990:intron 40.0%
GGGAGAAAGTTGTCAAAAAG+TGG - chr4_4:18780690-18780709 None:intergenic 40.0%
!! ACACACACTCTAAAGTTGCA+CGG - chr4_4:18781289-18781308 None:intergenic 40.0%
TATTGTGCTTCGCAGGAAAA+AGG + chr4_4:18781377-18781396 Msa0672990:intron 40.0%
GAGAGGAGTTTAGGAACATT+TGG + chr4_4:18781425-18781444 Msa0672990:CDS 40.0%
GGAGTTTAGGAACATTTGGA+TGG + chr4_4:18781429-18781448 Msa0672990:CDS 40.0%
AATCTGTGCAATGCCATGTT+GGG - chr4_4:18781541-18781560 None:intergenic 40.0%
TCCCAAAATCTTCATGGTCA+TGG + chr4_4:18781597-18781616 Msa0672990:CDS 40.0%
! CCCATGACCATGAAGATTTT+GGG - chr4_4:18781601-18781620 None:intergenic 40.0%
CCCAAAATCTTCATGGTCAT+GGG + chr4_4:18781598-18781617 Msa0672990:CDS 40.0%
! TCCCATGACCATGAAGATTT+TGG - chr4_4:18781602-18781621 None:intergenic 40.0%
AAATCTTCATGGTCATGGGA+TGG + chr4_4:18781602-18781621 Msa0672990:CDS 40.0%
ACTTTAGCTGATACATCCCT+TGG + chr4_4:18781743-18781762 Msa0672990:CDS 40.0%
AGCCGAGTAAATCCAAACAT+TGG - chr4_4:18781837-18781856 None:intergenic 40.0%
! AAAAAGTTAGTACCGAGTGG+AGG + chr4_4:18781921-18781940 Msa0672990:CDS 40.0%
TTAGGGTACATGTCATTACC+TGG + chr4_4:18781980-18781999 Msa0672990:CDS 40.0%
CGAAAAACATAAGCTACACC+AGG - chr4_4:18782001-18782020 None:intergenic 40.0%
TCTTTGTTACTGAGTCTCCA+AGG + chr4_4:18782092-18782111 Msa0672990:CDS 40.0%
TGCATTTAGCAACAAACTCG+CGG - chr4_4:18782197-18782216 None:intergenic 40.0%
AAATGCACCCCCTAAACAAA+AGG + chr4_4:18782210-18782229 Msa0672990:CDS 40.0%
!! AACCGAAGCCTTTTGTTTAG+GGG - chr4_4:18782221-18782240 None:intergenic 40.0%
CAAAGTTGTTTGAGAGAAGC+TGG + chr4_4:18782263-18782282 Msa0672990:CDS 40.0%
!! AAGCTGGGCTTTGAAAAGAA+TGG + chr4_4:18782279-18782298 Msa0672990:CDS 40.0%
ATGGTTGCAATGATGGTTCT+TGG + chr4_4:18782298-18782317 Msa0672990:CDS 40.0%
GCAATGATGGTTCTTGGTAT+TGG + chr4_4:18782304-18782323 Msa0672990:CDS 40.0%
TTTGGTATGCCTTTAGCAGT+TGG + chr4_4:18782343-18782362 Msa0672990:CDS 40.0%
TTGGTATGCCTTTAGCAGTT+GGG + chr4_4:18782344-18782363 Msa0672990:CDS 40.0%
CGTTGTGTTTAATGCCTTGA+TGG + chr4_4:18782393-18782412 Msa0672990:CDS 40.0%
! CTTGCATTTTCAATAGCGAG+TGG + chr4_4:18782475-18782494 Msa0672990:CDS 40.0%
! ATGTGTGTTGTTGTTGGATC+AGG + chr4_4:18782511-18782530 Msa0672990:CDS 40.0%
GGAGTACAAGGAATCAAAGT+TGG + chr4_4:18782532-18782551 Msa0672990:CDS 40.0%
ACAAGGAATCAAAGTTGGGT+TGG + chr4_4:18782537-18782556 Msa0672990:CDS 40.0%
CTCCCAGCAGATATCAAAAA+AGG - chr4_4:18782700-18782719 None:intergenic 40.0%
!!! CTTTTTTGATATCTGCTGGG+AGG + chr4_4:18782698-18782717 Msa0672990:CDS 40.0%
GTCTTCTCTTATGGTGTGTT+TGG + chr4_4:18782730-18782749 Msa0672990:CDS 40.0%
CTTCTCTTATGGTGTGTTTG+GGG + chr4_4:18782732-18782751 Msa0672990:CDS 40.0%
GACAAGAGAGCAAAAGAGTG+AGG + chr4_4:18776223-18776242 Msa0672990:five_prime_UTR 45.0%
ACATGTCGTCTTGTAAGCAG+TGG + chr4_4:18776754-18776773 Msa0672990:intron 45.0%
! CGGAGCCAGCCAAAAAATTT+TGG + chr4_4:18776777-18776796 Msa0672990:intron 45.0%
!!! CCACCCCAAAATTTTTTGGC+TGG - chr4_4:18776785-18776804 None:intergenic 45.0%
!! CCAGCCAAAAAATTTTGGGG+TGG + chr4_4:18776782-18776801 Msa0672990:intron 45.0%
!!! TTTTCTCTGATGGCGGAATG+CGG - chr4_4:18776808-18776827 None:intergenic 45.0%
AGGAGTGAGATTATGAGCTC+CGG + chr4_4:18777045-18777064 Msa0672990:intron 45.0%
TTGCCTTGTGGTTCAGATTG+GGG - chr4_4:18777368-18777387 None:intergenic 45.0%
!! AAGGTACCTTAACTTGCCCA+TGG + chr4_4:18777454-18777473 Msa0672990:intron 45.0%
GATATGGTCAGTGGACATTG+TGG - chr4_4:18777658-18777677 None:intergenic 45.0%
GGATCTTGCGGACATTGATA+TGG - chr4_4:18777674-18777693 None:intergenic 45.0%
!!! TAGTGGCTTTTGGGTTGCAT+AGG - chr4_4:18777862-18777881 None:intergenic 45.0%
GGCTCAAACTGAAGTAGAAG+AGG + chr4_4:18777991-18778010 Msa0672990:intron 45.0%
! TGGATGGTTATGATTGGCCA+TGG + chr4_4:18778022-18778041 Msa0672990:intron 45.0%
CGAAATAAATGGGTAGGCCA+TGG + chr4_4:18778092-18778111 Msa0672990:intron 45.0%
TCTCATCTTACAAGCAGAGG+CGG - chr4_4:18778141-18778160 None:intergenic 45.0%
ACCAGCTTAGCTAAGCTCAT+GGG - chr4_4:18780349-18780368 None:intergenic 45.0%
TACCAGCTTAGCTAAGCTCA+TGG - chr4_4:18780350-18780369 None:intergenic 45.0%
TGAGCTTAGCTAAGCTGGTA+AGG + chr4_4:18780350-18780369 Msa0672990:intron 45.0%
!!! TTTTTTTTGGGTGGTGTCCG+AGG - chr4_4:18780411-18780430 None:intergenic 45.0%
!! CACACACTCTAAAGTTGCAC+GGG - chr4_4:18781288-18781307 None:intergenic 45.0%
ATGCCATGTTGGGTAATCGT+CGG - chr4_4:18781531-18781550 None:intergenic 45.0%
GAATCTGTGCAATGCCATGT+TGG - chr4_4:18781542-18781561 None:intergenic 45.0%
TGTGCAAGTAGCTTCATCAC+AGG + chr4_4:18781665-18781684 Msa0672990:CDS 45.0%
! CGGAAAAAGTTAGTACCGAG+TGG + chr4_4:18781918-18781937 Msa0672990:CDS 45.0%
TTGTTACTGAGTCTCCAAGG+TGG + chr4_4:18782095-18782114 Msa0672990:CDS 45.0%
ACCCCCTAAACAAAAGGCTT+CGG + chr4_4:18782216-18782235 Msa0672990:CDS 45.0%
!! ACCGAAGCCTTTTGTTTAGG+GGG - chr4_4:18782220-18782239 None:intergenic 45.0%
CCTTTAGCAGTTGGGAACTT+GGG + chr4_4:18782352-18782371 Msa0672990:CDS 45.0%
CTTTAGCAGTTGGGAACTTG+GGG + chr4_4:18782353-18782372 Msa0672990:CDS 45.0%
CTTGGGGTTCGACATTTACT+TGG + chr4_4:18782369-18782388 Msa0672990:CDS 45.0%
! GTTGTTGGATCAGGAGTACA+AGG + chr4_4:18782520-18782539 Msa0672990:CDS 45.0%
! AGTTGTTTCCGACAAGTGTG+AGG + chr4_4:18782620-18782639 Msa0672990:CDS 45.0%
CTTGCTTTGCCAGAGACTAA+AGG + chr4_4:18782784-18782803 Msa0672990:CDS 45.0%
AGAGCTTGTCCTTTAGTCTC+TGG - chr4_4:18782796-18782815 None:intergenic 45.0%
!!! AAAAAATTGAAATTTTTTTA+TGG + chr4_4:18776824-18776843 Msa0672990:intron 5.0%
!! TAAAAATATTTACTAATAAT+TGG + chr4_4:18777786-18777805 Msa0672990:intron 5.0%
TGTCGTCTTGTAAGCAGTGG+CGG + chr4_4:18776757-18776776 Msa0672990:intron 50.0%
!!! GCGGCCACCCCAAAATTTTT+TGG - chr4_4:18776789-18776808 None:intergenic 50.0%
CTTGTGGTTCAGATTGGGGA+GGG - chr4_4:18777364-18777383 None:intergenic 50.0%
! AGGGTACCATGGGCAAGTTA+AGG - chr4_4:18777463-18777482 None:intergenic 50.0%
!! TGAAACAGGGAGGGTACCAT+GGG - chr4_4:18777473-18777492 None:intergenic 50.0%
GCGGACATTGATATGGTCAG+TGG - chr4_4:18777667-18777686 None:intergenic 50.0%
GAAGCAGCAACCAAAGAAGG+AGG + chr4_4:18777934-18777953 Msa0672990:intron 50.0%
GTCGTCCGATCTGAATTGTG+TGG + chr4_4:18779022-18779041 Msa0672990:intron 50.0%
ACGGCTGAGATGCAAAACAG+CGG + chr4_4:18779105-18779124 Msa0672990:intron 50.0%
!!! ACAGCGTGCTTTTTTACGGC+AGG + chr4_4:18779131-18779150 Msa0672990:intron 50.0%
!!! CAGCGTGCTTTTTTACGGCA+GGG + chr4_4:18779132-18779151 Msa0672990:intron 50.0%
TCCCATGAGCTTAGCTAAGC+TGG + chr4_4:18780345-18780364 Msa0672990:intron 50.0%
ACACCGACGATTACCCAACA+TGG + chr4_4:18781525-18781544 Msa0672990:CDS 50.0%
ACGAACGCCAGAATCCGATA+AGG - chr4_4:18781868-18781887 None:intergenic 50.0%
GGATTCTGGCGTTCGTCTAT+CGG + chr4_4:18781872-18781891 Msa0672990:CDS 50.0%
CCTTGCATTAGAAGCCACCT+TGG - chr4_4:18782112-18782131 None:intergenic 50.0%
CCAAGGTGGCTTCTAATGCA+AGG + chr4_4:18782109-18782128 Msa0672990:CDS 50.0%
GCCTTTAGCAGTTGGGAACT+TGG + chr4_4:18782351-18782370 Msa0672990:CDS 50.0%
CCCAAGTTCCCAACTGCTAA+AGG - chr4_4:18782355-18782374 None:intergenic 50.0%
GTCGTGTTCCTCACACTTGT+CGG - chr4_4:18782631-18782650 None:intergenic 50.0%
!! TGGGGAGGGTACTCCAAGAA+AGG - chr4_4:18777350-18777369 None:intergenic 55.0%
CCTTGTGGTTCAGATTGGGG+AGG - chr4_4:18777365-18777384 None:intergenic 55.0%
CCTCCCCAATCTGAACCACA+AGG + chr4_4:18777362-18777381 Msa0672990:intron 55.0%
!! GTGAAACAGGGAGGGTACCA+TGG - chr4_4:18777474-18777493 None:intergenic 55.0%
!! CAGGGTGCTGTAACAGCACA+TGG + chr4_4:18779000-18779019 Msa0672990:intron 55.0%
AAGGTCCGGGGTTCAAACCT+CGG + chr4_4:18780391-18780410 Msa0672990:intron 55.0%
TCCAACGGTGAACCTCCACT+CGG - chr4_4:18781936-18781955 None:intergenic 55.0%
GAGGAACACGACAACGTCGT+TGG + chr4_4:18782639-18782658 Msa0672990:CDS 55.0%
AGCTACACGAGGACTGGGGT+AGG - chr4_4:18778118-18778137 None:intergenic 60.0%
GGTGTCCGAGGTTTGAACCC+CGG - chr4_4:18780399-18780418 None:intergenic 60.0%
ACCGAGTGGAGGTTCACCGT+TGG + chr4_4:18781932-18781951 Msa0672990:CDS 60.0%
ACGAGGACTGGGGTAGGCCA+TGG - chr4_4:18778112-18778131 None:intergenic 65.0%
GCGGAGCTACACGAGGACTG+GGG - chr4_4:18778122-18778141 None:intergenic 65.0%
GGCGGAGCTACACGAGGACT+GGG - chr4_4:18778123-18778142 None:intergenic 65.0%
AGGCGGAGCTACACGAGGAC+TGG - chr4_4:18778124-18778143 None:intergenic 65.0%
AGCAGAGGCGGAGCTACACG+AGG - chr4_4:18778129-18778148 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 18776152 18782870 18776152 ID=Msa0672990;Name=Msa0672990
chr4_4 mRNA 18776152 18782870 18776152 ID=Msa0672990-mRNA-1;Parent=Msa0672990;Name=Msa0672990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|0|0.5|1|1|1|2|0|515
chr4_4 exon 18776152 18776386 18776152 ID=Msa0672990-mRNA-1:exon:5409;Parent=Msa0672990-mRNA-1
chr4_4 exon 18781392 18782870 18781392 ID=Msa0672990-mRNA-1:exon:5410;Parent=Msa0672990-mRNA-1
chr4_4 five_prime_UTR 18776152 18776317 18776152 ID=Msa0672990-mRNA-1:five_prime_utr;Parent=Msa0672990-mRNA-1
chr4_4 CDS 18776318 18776386 18776318 ID=Msa0672990-mRNA-1:cds;Parent=Msa0672990-mRNA-1
chr4_4 CDS 18781392 18782870 18781392 ID=Msa0672990-mRNA-1:cds;Parent=Msa0672990-mRNA-1
Gene Sequence

>Msa0672990

ATGGCTTCTATTGAGGTGCTTTCTGATTCAACATGCAGATCTATGGATGATAACAAAGCTAAAGATGATGAAAAAGGTATTCCTTCATCAGATGAAATGATAGAGAGGAGTTTAGGAACATTTGGATGGGTAGAATTTGTGCAATGCATTCTTGTATCATTCGCAATGTTCTTCGACGCACAACAATCATTCATAGCAATTTACACCGACGATTACCCAACATGGCATTGCACAGATTCAACAACATGCAATTCAAATTCAAACATTTGCAAAATCCCAAAATCTTCATGGTCATGGGATGGACCATCACAAAAAACAATCATATCTCAATGGAATCTTGAATGTGCAAGTAGCTTCATCACAGGTTTACCACAATCTTCATTCTTCATAGGTTGCCTAATTGGTTCTTTTGCATTAGCTACTTTAGCTGATACATCCCTTGGAAGAAAAAACATGTTGATTATCTCTTGTTTATCAATGTCAATAACCTCAATCATCATTGTGTTTTCAACCAATGTTTGGATTTACTCGGCTTTCAAATTCCTTATCGGATTCTGGCGTTCGTCTATCGGTACATGTGTTCTTGTTTTGTTAACGGAAAAAGTTAGTACCGAGTGGAGGTTCACCGTTGGAATTGTTGAATATTTTTGCTTCACATTAGGGTACATGTCATTACCTGGTGTAGCTTATGTTTTTCGATTTTCATCGTGGAAAAATGTTTACATTTGGACATCAATTCCAGCTATAATTTACTCAATCATTGGTTATTTCTTTGTTACTGAGTCTCCAAGGTGGCTTCTAATGCAAGGTAGAAACCAAGAAGCAATTGCAATGCTTAAAGGAATGAGCTCGGAAGAAAATGTTGATTTAACCGCGAGTTTGTTGCTAAATGCACCCCCTAAACAAAAGGCTTCGGTTTTTCAACTTTACTCATCAATAGCAAAGTTGTTTGAGAGAAGCTGGGCTTTGAAAAGAATGGTTGCAATGATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGTATGCCTTTAGCAGTTGGGAACTTGGGGTTCGACATTTACTTGGCCGTTGTGTTTAATGCCTTGATGGAAATACCATCTTGTGTCGCTACTTATTTCTTGGAGAATCGACAAAGAAAGCCGTCAATTCTTGCATTTTCAATAGCGAGTGGCATATGTTGTGTTATGTGTGTTGTTGTTGGATCAGGAGTACAAGGAATCAAAGTTGGGTTGGCGTTGACATCGTTTTTTAGTGCTACTACGGCTTATAATGTGTTTCTCATTTACATTATAGAGTTGTTTCCGACAAGTGTGAGGAACACGACAACGTCGTTGGTGAGACAAGCTATTGTTTTCGGTAACATTTTTAGTCCTTTTTTGATATCTGCTGGGAGGAAAAATGATGTCTTCTCTTATGGTGTGTTTGGGGTTGTTATTATGTTGTCATGTGTTACATTGCTTGCTTTGCCAGAGACTAAAGGACAAGCTCTTTGTGATACTATGGATCAACAAGAGAAAAAAGACAAAAATTTATGTTTAATGTAA

Protein sequence

>Msa0672990

MASIEVLSDSTCRSMDDNKAKDDEKGIPSSDEMIERSLGTFGWVEFVQCILVSFAMFFDAQQSFIAIYTDDYPTWHCTDSTTCNSNSNICKIPKSSWSWDGPSQKTIISQWNLECASSFITGLPQSSFFIGCLIGSFALATLADTSLGRKNMLIISCLSMSITSIIIVFSTNVWIYSAFKFLIGFWRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYMSLPGVAYVFRFSSWKNVYIWTSIPAIIYSIIGYFFVTESPRWLLMQGRNQEAIAMLKGMSSEENVDLTASLLLNAPPKQKASVFQLYSSIAKLFERSWALKRMVAMMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNALMEIPSCVATYFLENRQRKPSILAFSIASGICCVMCVVVGSGVQGIKVGLALTSFFSATTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDVFSYGVFGVVIMLSCVTLLALPETKGQALCDTMDQQEKKDKNLCLM*