AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403430 MtrunA17_Chr8g0360131 93.561 264 15 1 1 264 1 262 5.67e-157 437
Msa1403430 MtrunA17_Chr4g0001061 92.803 264 17 1 1 264 1 262 1.73e-153 428
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403430 AT1G80700.1 43.030 165 91 2 13 177 14 175 7.45e-32 117
Msa1403430 AT1G80980.1 43.030 165 91 2 13 177 14 175 1.74e-31 116
Msa1403430 AT1G80980.2 43.030 165 91 2 13 177 14 175 1.74e-31 116

Find 137 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCCTCTCTCCAATTT+TGG 0.087432 tig0022956:+36648 None:intergenic
CATTGACACCAGTAATATTT+TGG 0.133139 tig0022956:-41625 Msa1403430:five_prime_UTR
CTGATTTGTGTCTATGTTAC+TGG 0.150398 tig0022956:+37389 None:intergenic
ACTTGGTGCAGGCAAATTTA+TGG 0.177920 tig0022956:+37344 None:intergenic
TACTGCTTCAGCTGTATATT+TGG 0.193771 tig0022956:-38257 Msa1403430:intron
GATTTACATTATATCATCTA+TGG 0.201893 tig0022956:+36670 None:intergenic
TTTAAATAAACTCAAGAAAT+AGG 0.209129 tig0022956:+41723 None:intergenic
GTTATTAAATTATGCCTTAC+AGG 0.218554 tig0022956:-36987 Msa1403430:three_prime_UTR
TTAGGCTTTGTTTGCGAGTT+TGG 0.237592 tig0022956:-37191 Msa1403430:CDS
ATATAATGTAAATCCAAAAT+TGG 0.292860 tig0022956:-36661 Msa1403430:three_prime_UTR
TAATAACTATTCTCTTCTTA+AGG 0.311256 tig0022956:+37003 None:intergenic
TTAAATGGGAAAGCTATCTT+TGG 0.315145 tig0022956:-36899 Msa1403430:three_prime_UTR
TCGCCTCCTTCTTCTTCATT+TGG 0.316559 tig0022956:-40566 Msa1403430:intron
TCGCCTCCTTCTTCTTCATT+TGG 0.316559 tig0022956:-41882 Msa1403430:five_prime_UTR
ATCTCTGACGGCTGGGGATC+AGG 0.320712 tig0022956:+37480 None:intergenic
TCCACTTGTCAATATTATAT+TGG 0.321651 tig0022956:-42108 Msa1403430:five_prime_UTR
AAGAACTGAGATATTGAATA+TGG 0.322907 tig0022956:-36630 Msa1403430:three_prime_UTR
CTCTTTCATCTCTGACGGCT+GGG 0.331958 tig0022956:+37473 None:intergenic
GTTGTCTTGAGATATTAATT+TGG 0.343264 tig0022956:-36791 Msa1403430:three_prime_UTR
AACACAACCAACCCTTTCAT+AGG 0.356244 tig0022956:+36746 None:intergenic
ATCCTGGTAGTTTCTATTAG+AGG 0.360493 tig0022956:-36713 Msa1403430:three_prime_UTR
TAATTGAGTTGTTGAATTGA+TGG 0.362668 tig0022956:-41751 Msa1403430:five_prime_UTR
AGAATTAGATGAAGAAAGTA+AGG 0.364259 tig0022956:-37241 Msa1403430:CDS
TAGAGTGAAAAGAGGATGTT+TGG 0.377537 tig0022956:-38840 Msa1403430:exon
AAGTACAAAAGGCACTTCTC+TGG 0.386193 tig0022956:+38745 None:intergenic
GGGAAGGGAAAGGAGGGCTT+TGG 0.387355 tig0022956:-37166 Msa1403430:CDS
TCTCTTTCATCTCTGACGGC+TGG 0.394697 tig0022956:+37472 None:intergenic
TTTGCCTGCATGCCTTCCTT+GGG 0.414653 tig0022956:-38397 Msa1403430:intron
TCGCGCCGCCGTCCCATCTC+CGG 0.418385 tig0022956:-40624 Msa1403430:five_prime_UTR
TCGCGCCGCCGTCCCATCTC+CGG 0.418385 tig0022956:-41940 Msa1403430:five_prime_UTR
ATAGACACAAATCAGGTAAC+TGG 0.424363 tig0022956:-37381 Msa1403430:CDS
CTTAAGATGCTCGGATCTTA+CGG 0.429339 tig0022956:-37094 Msa1403430:three_prime_UTR
AGATGAAGAAAGTAAGGGTT+TGG 0.431523 tig0022956:-37235 Msa1403430:CDS
TGCTTCAGCTGTATATTTGG+TGG 0.443339 tig0022956:-38254 Msa1403430:intron
GGCTTTGTTTGCGAGTTTGG+AGG 0.446379 tig0022956:-37188 Msa1403430:CDS
TATATCATCTATGGGAAAGA+AGG 0.449994 tig0022956:+36679 None:intergenic
TGTCGTCCCGCTTCGACGTA+GGG 0.452405 tig0022956:-36955 Msa1403430:three_prime_UTR
CATAGGAAGTGGAGGAGAAA+AGG 0.454618 tig0022956:-37578 Msa1403430:intron
TTTGGAGGGGAAGGGAAAGG+AGG 0.457429 tig0022956:-37173 Msa1403430:CDS
GGCGACAGCAGCAGCTTGGT+CGG 0.471578 tig0022956:+40584 None:intergenic
GGCGACAGCAGCAGCTTGGT+CGG 0.471578 tig0022956:+41900 None:intergenic
GAACCGCCACTCGTGTTACT+TGG 0.471791 tig0022956:+37327 None:intergenic
TTTATCAGAAGCTGTAGTAC+AGG 0.473889 tig0022956:-37045 Msa1403430:three_prime_UTR
GTTCTTTGCCGAAGTACAAA+AGG 0.477015 tig0022956:+38734 None:intergenic
TTGGAGGGGAAGGGAAAGGA+GGG 0.479070 tig0022956:-37172 Msa1403430:CDS
GAGTTTGGAGGGGAAGGGAA+AGG 0.479638 tig0022956:-37176 Msa1403430:CDS
GGAATGGACGGCGCCGGAGA+TGG 0.484068 tig0022956:+40611 None:intergenic
GGAATGGACGGCGCCGGAGA+TGG 0.484068 tig0022956:+41927 None:intergenic
CTGTCGTCCCGCTTCGACGT+AGG 0.484566 tig0022956:-36956 Msa1403430:three_prime_UTR
CCAACACTGTCTTGTTCGAC+TGG 0.484860 tig0022956:+37291 None:intergenic
TTGTTGCATAATGATGTTGT+TGG 0.492854 tig0022956:+38774 None:intergenic
TACAATCATGTACAAAATGC+AGG 0.492925 tig0022956:-36846 Msa1403430:three_prime_UTR
GAATGGACGGCGCCGGAGAT+GGG 0.493907 tig0022956:+40612 None:intergenic
GAATGGACGGCGCCGGAGAT+GGG 0.493907 tig0022956:+41928 None:intergenic
GAAGGAAGAAGAAGAAGCAA+AGG 0.498324 tig0022956:-37550 Msa1403430:CDS
GGACGGCGCCGGAGATGGGA+CGG 0.500635 tig0022956:+40616 None:intergenic
GGACGGCGCCGGAGATGGGA+CGG 0.500635 tig0022956:+41932 None:intergenic
GCTTTGTTTGCGAGTTTGGA+GGG 0.504238 tig0022956:-37187 Msa1403430:CDS
ATTTACATTATATCATCTAT+GGG 0.507836 tig0022956:+36671 None:intergenic
AATTATGTTAATTTGTGTTG+TGG 0.510784 tig0022956:-39045 Msa1403430:five_prime_UTR
CTGTAGTACAGGGCTCTCAT+TGG 0.513704 tig0022956:-37034 Msa1403430:three_prime_UTR
AAATGAAGAAAACAGTGAAA+AGG 0.513995 tig0022956:+41837 None:intergenic
CAGTAACATAGACACAAATC+AGG 0.516463 tig0022956:-37388 Msa1403430:CDS
AAAACAGTGAAAAGGTGAAC+GGG 0.517671 tig0022956:+41845 None:intergenic
ACACAACCAACCCTTTCATA+GGG 0.518373 tig0022956:+36747 None:intergenic
GGAGGAGAAAAGGAAGCAGA+AGG 0.518581 tig0022956:-37568 Msa1403430:CDS
ATCTTCCCCTACGTCGAAGC+GGG 0.519253 tig0022956:+36949 None:intergenic
CAAAGCCTAAGAAAAGAACT+TGG 0.519757 tig0022956:+37204 None:intergenic
AGGAGGCGACAGCAGCAGCT+TGG 0.521003 tig0022956:+40580 None:intergenic
AGGAGGCGACAGCAGCAGCT+TGG 0.521003 tig0022956:+41896 None:intergenic
GTAAATCCAAAATTGGAGAG+AGG 0.521722 tig0022956:-36654 Msa1403430:three_prime_UTR
CGAACAAGACAGTGTTGGTA+AGG 0.522003 tig0022956:-37286 Msa1403430:CDS
AGCAGCAGCTTGGTCGGAGA+CGG 0.524554 tig0022956:+40590 None:intergenic
AGCAGCAGCTTGGTCGGAGA+CGG 0.524554 tig0022956:+41906 None:intergenic
ATCAGTGAAAAGCATCTTGA+GGG 0.525145 tig0022956:+38626 None:intergenic
GTGTCAATGTCGTGTCTGTC+CGG 0.525332 tig0022956:+41653 None:intergenic
TCTTTCATCTCTGACGGCTG+GGG 0.525585 tig0022956:+37474 None:intergenic
CAGCTTGGTCGGAGACGGAA+TGG 0.526153 tig0022956:+40595 None:intergenic
CAGCTTGGTCGGAGACGGAA+TGG 0.526153 tig0022956:+41911 None:intergenic
GTTTGCGAGTTTGGAGGGGA+AGG 0.529856 tig0022956:-37182 Msa1403430:CDS
CATACCCAAGGAAGGCATGC+AGG 0.531730 tig0022956:+38393 None:intergenic
TTTGCGAGTTTGGAGGGGAA+GGG 0.538653 tig0022956:-37181 Msa1403430:CDS
AGTACAAAAGGCACTTCTCT+GGG 0.539480 tig0022956:+38746 None:intergenic
TGGAAGAAATAGAATCAAAG+TGG 0.539659 tig0022956:-37125 Msa1403430:three_prime_UTR
CTACGTCGAAGCGGGACGAC+AGG 0.544058 tig0022956:+36957 None:intergenic
GAAACTTGAAGAGACTGTAA+AGG 0.544551 tig0022956:-37442 Msa1403430:CDS
TGGCTCTTACGTCATTGCCA+TGG 0.545765 tig0022956:-39095 Msa1403430:five_prime_UTR
CGACAGGTCAGTATCCTGTA+AGG 0.546399 tig0022956:+36973 None:intergenic
TGAAGAAAGTAAGGGTTTGG+TGG 0.546548 tig0022956:-37232 Msa1403430:CDS
CACAACCAACCCTTTCATAG+GGG 0.547523 tig0022956:+36748 None:intergenic
ATATTAATTTGGATGCATCA+TGG 0.547697 tig0022956:-36780 Msa1403430:three_prime_UTR
ATCTCAAGACAACATGATCA+TGG 0.548295 tig0022956:+36801 None:intergenic
TTTGAATTTGAAGAATGAGT+TGG 0.555218 tig0022956:-39071 Msa1403430:five_prime_UTR
AACACACCAAATGAAGAAGA+AGG 0.555461 tig0022956:+40560 None:intergenic
AACACACCAAATGAAGAAGA+AGG 0.555461 tig0022956:+41876 None:intergenic
AGTCTCTCTTTCATCTCTGA+CGG 0.555990 tig0022956:+37468 None:intergenic
TAAATCCAAAATTGGAGAGA+GGG 0.559542 tig0022956:-36653 Msa1403430:three_prime_UTR
TAATTTGGATGCATCATGGA+TGG 0.562689 tig0022956:-36776 Msa1403430:three_prime_UTR
GGAGACGGAATGGACGGCGC+CGG 0.563890 tig0022956:+40605 None:intergenic
GGAGACGGAATGGACGGCGC+CGG 0.563890 tig0022956:+41921 None:intergenic
TCGTTATGAAATCAGAAGAA+TGG 0.565432 tig0022956:-38221 Msa1403430:CDS
TGTTTGGCAGCGGAAGGAGG+TGG 0.566252 tig0022956:-38824 Msa1403430:CDS
AGAGGATGTTTGGCAGCGGA+AGG 0.574708 tig0022956:-38830 Msa1403430:exon
CTTTGTTTGCGAGTTTGGAG+GGG 0.576812 tig0022956:-37186 Msa1403430:CDS
ATTCTTCAAATTCAAAACCA+TGG 0.584762 tig0022956:+39078 None:intergenic
CCACTCGTGTTACTTGGTGC+AGG 0.587465 tig0022956:+37333 None:intergenic
TTATCAGAAGCTGTAGTACA+GGG 0.588108 tig0022956:-37044 Msa1403430:three_prime_UTR
GAATTAGATGAAGAAAGTAA+GGG 0.596191 tig0022956:-37240 Msa1403430:CDS
AGGATAATTCTCTCAAGTCA+AGG 0.597590 tig0022956:-37266 Msa1403430:CDS
TGAAATCAGAAGAATGGAAG+CGG 0.598870 tig0022956:-38215 Msa1403430:intron
TCCAATATAATATTGACAAG+TGG 0.605225 tig0022956:+42107 None:intergenic
GAAGAGCTTCTTAAGATGCT+CGG 0.605978 tig0022956:-37103 Msa1403430:three_prime_UTR
TTGGTCGGAGACGGAATGGA+CGG 0.606586 tig0022956:+40599 None:intergenic
TTGGTCGGAGACGGAATGGA+CGG 0.606586 tig0022956:+41915 None:intergenic
GATCAGTGAAAAGCATCTTG+AGG 0.607209 tig0022956:+38625 None:intergenic
TTTGATGTAAGCGCATGTGT+TGG 0.607377 tig0022956:-41588 Msa1403430:five_prime_UTR
GAAAACAGTGAAAAGGTGAA+CGG 0.609272 tig0022956:+41844 None:intergenic
AATCTTCCCCTACGTCGAAG+CGG 0.610882 tig0022956:+36948 None:intergenic
GAAAAGAGGATGTTTGGCAG+CGG 0.612545 tig0022956:-38834 Msa1403430:exon
GTCGTCCCGCTTCGACGTAG+GGG 0.613186 tig0022956:-36954 Msa1403430:three_prime_UTR
TGCCTCTAATAGAAACTACC+AGG 0.613860 tig0022956:+36711 None:intergenic
GGATGTTTGGCAGCGGAAGG+AGG 0.614484 tig0022956:-38827 Msa1403430:CDS
AGGTCGTCATCACTGATGAA+AGG 0.615459 tig0022956:-38683 Msa1403430:CDS
CGGCGCCGGAGATGGGACGG+CGG 0.616361 tig0022956:+40619 None:intergenic
CGGCGCCGGAGATGGGACGG+CGG 0.616361 tig0022956:+41935 None:intergenic
TGAAGCACTAACTTGAACAC+CGG 0.633817 tig0022956:-41672 Msa1403430:five_prime_UTR
ACAACCAACCCTTTCATAGG+GGG 0.639922 tig0022956:+36749 None:intergenic
AATCACTTCATAGGAAGTGG+AGG 0.644797 tig0022956:-37586 Msa1403430:intron
CCAGTCGAACAAGACAGTGT+TGG 0.650294 tig0022956:-37291 Msa1403430:CDS
TATGCTACCATACCCAAGGA+AGG 0.656747 tig0022956:+38385 None:intergenic
CAGTGCTACTACATTGACAA+AGG 0.670029 tig0022956:-41536 Msa1403430:intron
AGTGAAAAGCATCTTGAGGG+CGG 0.673957 tig0022956:+38629 None:intergenic
GCACCAAGTAACACGAGTGG+CGG 0.675884 tig0022956:-37330 Msa1403430:CDS
CAACCAACCCTTTCATAGGG+GGG 0.678283 tig0022956:+36750 None:intergenic
ACACCAAATGAAGAAGAAGG+AGG 0.682145 tig0022956:+40563 None:intergenic
ACACCAAATGAAGAAGAAGG+AGG 0.682145 tig0022956:+41879 None:intergenic
CCTGCACCAAGTAACACGAG+TGG 0.723363 tig0022956:-37333 Msa1403430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTGATTTTTTAAAATTA+AGG - tig0022956:37469-37488 Msa1403430:CDS 10.0%
!!! AGAATTTCTATTTATATTTT+TGG + tig0022956:40265-40284 None:intergenic 10.0%
!!! TTTTACTAATACTATTTATT+AGG - tig0022956:40984-41003 Msa1403430:intron 10.0%
!! CAAAATGAAAAAAATAGATA+AGG + tig0022956:36941-36960 None:intergenic 15.0%
!! TTTAAATAAACTCAAGAAAT+AGG + tig0022956:37019-37038 None:intergenic 15.0%
!!! ATATAAAGAATCTTTTTGAT+TGG + tig0022956:37692-37711 None:intergenic 15.0%
!!! TTTATATTTTGTTATAGACA+TGG - tig0022956:37705-37724 Msa1403430:intron 15.0%
!! CAAAATGAAAAAAATAGATA+AGG + tig0022956:36941-36960 None:intergenic 15.0%
!! TTTAAATAAACTCAAGAAAT+AGG + tig0022956:37019-37038 None:intergenic 15.0%
!!! TAAAAGCTTTTTAAGTTTTA+AGG - tig0022956:39220-39239 Msa1403430:intron 15.0%
!!! TATGTTTTGTAACAATTTTT+TGG - tig0022956:39764-39783 Msa1403430:intron 15.0%
!!! CTAATTTTTTATCATTTCAT+TGG + tig0022956:39869-39888 None:intergenic 15.0%
!! AAATTAAAAGATCATCAAAA+GGG + tig0022956:40171-40190 None:intergenic 15.0%
!! AAAATTAAAAGATCATCAAA+AGG + tig0022956:40172-40191 None:intergenic 15.0%
!! AATGAATTCTATATAATGTT+TGG - tig0022956:40918-40937 Msa1403430:intron 15.0%
!! ATTTACATTATATCATCTAT+GGG + tig0022956:42071-42090 None:intergenic 15.0%
!! ATATAATGTAAATCCAAAAT+TGG - tig0022956:42078-42097 Msa1403430:five_prime_UTR 15.0%
!!! CTGATTTTTTAAAATTAAGG+TGG - tig0022956:37472-37491 Msa1403430:CDS 20.0%
!!! AGTTAAACTGTTTTTTGTAT+AGG - tig0022956:37525-37544 Msa1403430:CDS 20.0%
!!! TGTATTATTGATGATGAAAA+AGG + tig0022956:38948-38967 None:intergenic 20.0%
!!! AATTATGTTAATTTGTGTTG+TGG - tig0022956:39694-39713 Msa1403430:intron 20.0%
!! TGAAATGATAAAAAATTAGC+TGG - tig0022956:39870-39889 Msa1403430:intron 20.0%
!! GAAATGATAAAAAATTAGCT+GGG - tig0022956:39871-39890 Msa1403430:intron 20.0%
!! AATTAAAAGATCATCAAAAG+GGG + tig0022956:40170-40189 None:intergenic 20.0%
!!! AAATTTTACCATATCAATTC+AGG - tig0022956:40653-40672 Msa1403430:intron 20.0%
!!! AATTTTACCATATCAATTCA+GGG - tig0022956:40654-40673 Msa1403430:intron 20.0%
!! TAAAAAAGGATATATAATCC+AGG + tig0022956:41022-41041 None:intergenic 20.0%
!! AAATAATACTATCATCCTTT+GGG - tig0022956:41096-41115 Msa1403430:intron 20.0%
!! TAATAACTATTCTCTTCTTA+AGG + tig0022956:41739-41758 None:intergenic 20.0%
!!! AAGATTTTGAGTTTATTGTA+AGG - tig0022956:41808-41827 Msa1403430:five_prime_UTR 20.0%
!!! TAAGGAAGGAAATTTTAAAT+GGG - tig0022956:41826-41845 Msa1403430:five_prime_UTR 20.0%
!! GATTTACATTATATCATCTA+TGG + tig0022956:42072-42091 None:intergenic 20.0%
! TCCACTTGTCAATATTATAT+TGG - tig0022956:36631-36650 Msa1403430:three_prime_UTR 25.0%
! TCCAATATAATATTGACAAG+TGG + tig0022956:36635-36654 None:intergenic 25.0%
! AAATGAAGAAAACAGTGAAA+AGG + tig0022956:36905-36924 None:intergenic 25.0%
!! TAATTGAGTTGTTGAATTGA+TGG - tig0022956:36988-37007 Msa1403430:three_prime_UTR 25.0%
!! CGATTTTTCCAAAATATTAC+TGG + tig0022956:37125-37144 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG + tig0022956:37348-37367 None:intergenic 25.0%
! TGTCTATAACAAAAGATGAA+GGG + tig0022956:37384-37403 None:intergenic 25.0%
! ATGTCTATAACAAAAGATGA+AGG + tig0022956:37385-37404 None:intergenic 25.0%
! ATTCAAACAAAGTCTTAAAG+TGG - tig0022956:37782-37801 Msa1403430:intron 25.0%
! TTCAAACAAAGTCTTAAAGT+GGG - tig0022956:37783-37802 Msa1403430:intron 25.0%
! AACATCTTGTGTAAAAAACA+GGG - tig0022956:37872-37891 Msa1403430:intron 25.0%
! TAAGACTCTGTTTGAATAAA+GGG + tig0022956:37937-37956 None:intergenic 25.0%
! AAATGAAGAAAACAGTGAAA+AGG + tig0022956:36905-36924 None:intergenic 25.0%
!! TAATTGAGTTGTTGAATTGA+TGG - tig0022956:36988-37007 Msa1403430:three_prime_UTR 25.0%
!! CGATTTTTCCAAAATATTAC+TGG + tig0022956:37125-37144 None:intergenic 25.0%
!!! GAGTTTTTATTTTCTTGAAG+AGG - tig0022956:38686-38705 Msa1403430:CDS 25.0%
! ATATAGATGCTCAAATCAAT+CGG - tig0022956:39055-39074 Msa1403430:five_prime_UTR 25.0%
! AGTATATCAATTATGCTTGA+AGG - tig0022956:39142-39161 Msa1403430:intron 25.0%
! AAGGATGTGAAGTATAATAA+AGG - tig0022956:39239-39258 Msa1403430:intron 25.0%
! AGGATGTGAAGTATAATAAA+GGG - tig0022956:39240-39259 Msa1403430:intron 25.0%
! ATTCCTAATTTCTATTGTCA+TGG - tig0022956:39269-39288 Msa1403430:intron 25.0%
! AGGAATTAGGCAAAATAATT+AGG - tig0022956:39343-39362 Msa1403430:intron 25.0%
! TATATATTTATGTGTGTGAC+TGG - tig0022956:39434-39453 Msa1403430:intron 25.0%
! CCATAATTTATTTATGCCAA+AGG + tig0022956:39491-39510 None:intergenic 25.0%
! CCTTTGGCATAAATAAATTA+TGG - tig0022956:39488-39507 Msa1403430:intron 25.0%
! ATTCTTCAAATTCAAAACCA+TGG + tig0022956:39664-39683 None:intergenic 25.0%
! TTTGAATTTGAAGAATGAGT+TGG - tig0022956:39668-39687 Msa1403430:intron 25.0%
! TAAATCATTGGTCAAATCAA+TGG + tig0022956:39792-39811 None:intergenic 25.0%
! TAAACATTGTAACCAAATAC+AGG + tig0022956:40235-40254 None:intergenic 25.0%
! GTATTTGGTTACAATGTTTA+TGG - tig0022956:40235-40254 Msa1403430:intron 25.0%
! CAAAAAAAAATTGCACAAGA+TGG + tig0022956:40326-40345 None:intergenic 25.0%
! AATTCACTCTTACATTACAA+AGG + tig0022956:40563-40582 None:intergenic 25.0%
!! ATTTTACCATATCAATTCAG+GGG - tig0022956:40655-40674 Msa1403430:intron 25.0%
!! CCATAAAGAGTACATTAAAT+TGG + tig0022956:40682-40701 None:intergenic 25.0%
! CCAATTTAATGTACTCTTTA+TGG - tig0022956:40679-40698 Msa1403430:intron 25.0%
! ACAGTTTCAGCAAATAAAAA+AGG + tig0022956:41036-41055 None:intergenic 25.0%
! GAAATAATACTATCATCCTT+TGG - tig0022956:41095-41114 Msa1403430:intron 25.0%
! AATAATACTATCATCCTTTG+GGG - tig0022956:41097-41116 Msa1403430:intron 25.0%
! GGAGAAAATTCATTATCAAA+AGG + tig0022956:41132-41151 None:intergenic 25.0%
! AAAGGAGAAAGAAAAAGAAT+TGG - tig0022956:41207-41226 Msa1403430:intron 25.0%
! AGAATTAGATGAAGAAAGTA+AGG - tig0022956:41498-41517 Msa1403430:intron 25.0%
! GAATTAGATGAAGAAAGTAA+GGG - tig0022956:41499-41518 Msa1403430:intron 25.0%
! GTTATTAAATTATGCCTTAC+AGG - tig0022956:41752-41771 Msa1403430:five_prime_UTR 25.0%
!!! TTTTGAGTTTATTGTAAGGA+AGG - tig0022956:41812-41831 Msa1403430:five_prime_UTR 25.0%
!! GTAAGGAAGGAAATTTTAAA+TGG - tig0022956:41825-41844 Msa1403430:five_prime_UTR 25.0%
! GTTGTCTTGAGATATTAATT+TGG - tig0022956:41948-41967 Msa1403430:five_prime_UTR 25.0%
!! ATATTAATTTGGATGCATCA+TGG - tig0022956:41959-41978 Msa1403430:five_prime_UTR 25.0%
! AAGAACTGAGATATTGAATA+TGG - tig0022956:42109-42128 Msa1403430:five_prime_UTR 25.0%
!! CATTTTGTTTCATGCGATTT+TGG - tig0022956:36954-36973 Msa1403430:three_prime_UTR 30.0%
! CATTGACACCAGTAATATTT+TGG - tig0022956:37114-37133 Msa1403430:three_prime_UTR 30.0%
AGTAAACAATGCATTATGTG+AGG + tig0022956:37241-37260 None:intergenic 30.0%
TATCTACTGGTATAAGCAAT+TGG + tig0022956:37335-37354 None:intergenic 30.0%
ATTCAGATGAAGACAATGTT+AGG + tig0022956:37431-37450 None:intergenic 30.0%
CAACATCTTGTGTAAAAAAC+AGG - tig0022956:37871-37890 Msa1403430:intron 30.0%
ACATCTTGTGTAAAAAACAG+GGG - tig0022956:37873-37892 Msa1403430:intron 30.0%
CTAAGACTCTGTTTGAATAA+AGG + tig0022956:37938-37957 None:intergenic 30.0%
!! CATTTTGTTTCATGCGATTT+TGG - tig0022956:36954-36973 Msa1403430:three_prime_UTR 30.0%
! CATTGACACCAGTAATATTT+TGG - tig0022956:37114-37133 Msa1403430:three_prime_UTR 30.0%
AGTAAACAATGCATTATGTG+AGG + tig0022956:37241-37260 None:intergenic 30.0%
! TTATTTTCTTGAAGAGGTCA+TGG - tig0022956:38692-38711 Msa1403430:CDS 30.0%
TCAACATTAGGAGAAATTGT+AGG - tig0022956:38743-38762 Msa1403430:CDS 30.0%
ATGACAGTTATATGAAGGAT+TGG - tig0022956:38799-38818 Msa1403430:CDS 30.0%
TGACAGTTATATGAAGGATT+GGG - tig0022956:38800-38819 Msa1403430:CDS 30.0%
! TTTTCAGTTACAACCTTAGA+AGG - tig0022956:38847-38866 Msa1403430:exon 30.0%
ATTCCTATTTGTTCATGCAT+TGG - tig0022956:38994-39013 Msa1403430:intron 30.0%
AATTATGCTTGAAGGAAATG+AGG - tig0022956:39150-39169 Msa1403430:intron 30.0%
!!! TGTCATTTTTATCTCCTATC+GGG + tig0022956:39199-39218 None:intergenic 30.0%
!!! CTGTCATTTTTATCTCCTAT+CGG + tig0022956:39200-39219 None:intergenic 30.0%
AGTCCATGACAATAGAAATT+AGG + tig0022956:39275-39294 None:intergenic 30.0%
ATATGTGTGCATGTGTTAAA+AGG - tig0022956:39317-39336 Msa1403430:intron 30.0%
TGTTAAAAGGCTAAGGAATT+AGG - tig0022956:39330-39349 Msa1403430:intron 30.0%
! ATTTGTGTTGTGGTTTTTGA+AGG - tig0022956:39704-39723 Msa1403430:intron 30.0%
TTGTTGCATAATGATGTTGT+TGG + tig0022956:39968-39987 None:intergenic 30.0%
CAACAACAACAACAATAACA+AGG - tig0022956:40036-40055 Msa1403430:intron 30.0%
!! ACCCAAACTTTTTCTTCTTT+GGG + tig0022956:40141-40160 None:intergenic 30.0%
!! TACCCAAACTTTTTCTTCTT+TGG + tig0022956:40142-40161 None:intergenic 30.0%
TCGTTATGAAATCAGAAGAA+TGG - tig0022956:40518-40537 Msa1403430:intron 30.0%
TTTGTGCATTATAGAAATGC+TGG - tig0022956:40584-40603 Msa1403430:five_prime_UTR 30.0%
CACTTAAGTTACAACCTAAA+GGG + tig0022956:40707-40726 None:intergenic 30.0%
ACACTTAAGTTACAACCTAA+AGG + tig0022956:40708-40727 None:intergenic 30.0%
! AATTATTTGTTGCTGCATCA+TGG - tig0022956:40816-40835 Msa1403430:intron 30.0%
! ATTAGGAGTATAATATGTCC+TGG - tig0022956:41001-41020 Msa1403430:intron 30.0%
CTGGTACTTTGTGAATAAAA+GGG - tig0022956:41062-41081 Msa1403430:intron 30.0%
! TTTTCTCCAAATCACTTCAT+AGG - tig0022956:41144-41163 Msa1403430:intron 30.0%
TTAAATGGGAAAGCTATCTT+TGG - tig0022956:41840-41859 Msa1403430:five_prime_UTR 30.0%
TACAATCATGTACAAAATGC+AGG - tig0022956:41893-41912 Msa1403430:five_prime_UTR 30.0%
TATATCATCTATGGGAAAGA+AGG + tig0022956:42063-42082 None:intergenic 30.0%
TAAATCCAAAATTGGAGAGA+GGG - tig0022956:42086-42105 Msa1403430:five_prime_UTR 30.0%
AACACACCAAATGAAGAAGA+AGG + tig0022956:36866-36885 None:intergenic 35.0%
AAAACAGTGAAAAGGTGAAC+GGG + tig0022956:36897-36916 None:intergenic 35.0%
GAAAACAGTGAAAAGGTGAA+CGG + tig0022956:36898-36917 None:intergenic 35.0%
! ATAAGCACTTGGAGACTTTT+TGG + tig0022956:37646-37665 None:intergenic 35.0%
TATCTACCAACATAAGCACT+TGG + tig0022956:37657-37676 None:intergenic 35.0%
!! TTACACAAGATGTTGTTTCC+AGG + tig0022956:37866-37885 None:intergenic 35.0%
AACACACCAAATGAAGAAGA+AGG + tig0022956:36866-36885 None:intergenic 35.0%
AAAACAGTGAAAAGGTGAAC+GGG + tig0022956:36897-36916 None:intergenic 35.0%
GAAAACAGTGAAAAGGTGAA+CGG + tig0022956:36898-36917 None:intergenic 35.0%
! CGTATAGCTTTTAGCACAAT+GGG + tig0022956:38658-38677 None:intergenic 35.0%
AGCTAATAGTCGTCAACATT+AGG - tig0022956:38731-38750 Msa1403430:CDS 35.0%
GAAATTGTAGGCATACTGTT+AGG - tig0022956:38755-38774 Msa1403430:CDS 35.0%
AGTTACAACCTTAGAAGGTT+TGG - tig0022956:38852-38871 Msa1403430:five_prime_UTR 35.0%
GTTACAACCTTAGAAGGTTT+GGG - tig0022956:38853-38872 Msa1403430:five_prime_UTR 35.0%
AGAGAAATTCCTTTCTCTGA+AGG - tig0022956:38877-38896 Msa1403430:five_prime_UTR 35.0%
TGAAAAAGGACGTTGCAATA+GGG + tig0022956:38934-38953 None:intergenic 35.0%
ATGAAAAAGGACGTTGCAAT+AGG + tig0022956:38935-38954 None:intergenic 35.0%
!!! CCTTCTCTTGTCGATTTTAA+TGG + tig0022956:39033-39052 None:intergenic 35.0%
CCATTAAAATCGACAAGAGA+AGG - tig0022956:39030-39049 Msa1403430:intron 35.0%
AGATATGTATTACACCCGAT+AGG - tig0022956:39182-39201 Msa1403430:intron 35.0%
ATGCCAAAGGTTTCAAACAT+GGG + tig0022956:39478-39497 None:intergenic 35.0%
TATGCCAAAGGTTTCAAACA+TGG + tig0022956:39479-39498 None:intergenic 35.0%
TAGAGTGAAAAGAGGATGTT+TGG - tig0022956:39899-39918 Msa1403430:intron 35.0%
!! ATCAGTGAAAAGCATCTTGA+GGG + tig0022956:40116-40135 None:intergenic 35.0%
!! CCAAACTTTTTCTTCTTTGG+GGG + tig0022956:40139-40158 None:intergenic 35.0%
!! CCCAAACTTTTTCTTCTTTG+GGG + tig0022956:40140-40159 None:intergenic 35.0%
CCCCAAAGAAGAAAAAGTTT+GGG - tig0022956:40137-40156 Msa1403430:intron 35.0%
TTAAGTAACCCTCCTGTATT+TGG - tig0022956:40220-40239 Msa1403430:intron 35.0%
CATTGTAACCAAATACAGGA+GGG + tig0022956:40231-40250 None:intergenic 35.0%
ACATTGTAACCAAATACAGG+AGG + tig0022956:40232-40251 None:intergenic 35.0%
ATAAGCTCAAGTTCAATGCT+TGG + tig0022956:40394-40413 None:intergenic 35.0%
TACTGCTTCAGCTGTATATT+TGG - tig0022956:40482-40501 Msa1403430:intron 35.0%
TGAAATCAGAAGAATGGAAG+CGG - tig0022956:40524-40543 Msa1403430:intron 35.0%
TACTCTTTATGGAACCCTTT+AGG - tig0022956:40690-40709 Msa1403430:intron 35.0%
TGCTGAACTCATGAGATATA+TGG - tig0022956:40949-40968 Msa1403430:intron 35.0%
GCTGAACTCATGAGATATAT+GGG - tig0022956:40950-40969 Msa1403430:intron 35.0%
CTGAACTCATGAGATATATG+GGG - tig0022956:40951-40970 Msa1403430:intron 35.0%
GCTGGTACTTTGTGAATAAA+AGG - tig0022956:41061-41080 Msa1403430:intron 35.0%
GAAACTTGAAGAGACTGTAA+AGG - tig0022956:41297-41316 Msa1403430:intron 35.0%
! CTGATTTGTGTCTATGTTAC+TGG + tig0022956:41353-41372 None:intergenic 35.0%
CAGTAACATAGACACAAATC+AGG - tig0022956:41351-41370 Msa1403430:intron 35.0%
ATAGACACAAATCAGGTAAC+TGG - tig0022956:41358-41377 Msa1403430:intron 35.0%
AGGATAATTCTCTCAAGTCA+AGG - tig0022956:41473-41492 Msa1403430:intron 35.0%
AGATGAAGAAAGTAAGGGTT+TGG - tig0022956:41504-41523 Msa1403430:intron 35.0%
! CAACTCCAAGTTCTTTTCTT+AGG - tig0022956:41530-41549 Msa1403430:intron 35.0%
CAAAGCCTAAGAAAAGAACT+TGG + tig0022956:41538-41557 None:intergenic 35.0%
TTTATCAGAAGCTGTAGTAC+AGG - tig0022956:41694-41713 Msa1403430:five_prime_UTR 35.0%
TTATCAGAAGCTGTAGTACA+GGG - tig0022956:41695-41714 Msa1403430:five_prime_UTR 35.0%
ATCTCAAGACAACATGATCA+TGG + tig0022956:41941-41960 None:intergenic 35.0%
TAATTTGGATGCATCATGGA+TGG - tig0022956:41963-41982 Msa1403430:five_prime_UTR 35.0%
!!! TGTGTTTTGACTGAAAATCC+TGG - tig0022956:42010-42029 Msa1403430:five_prime_UTR 35.0%
ATCCTGGTAGTTTCTATTAG+AGG - tig0022956:42026-42045 Msa1403430:five_prime_UTR 35.0%
GTAAATCCAAAATTGGAGAG+AGG - tig0022956:42085-42104 Msa1403430:five_prime_UTR 35.0%
ACACCAAATGAAGAAGAAGG+AGG + tig0022956:36863-36882 None:intergenic 40.0%
! TGAAGCACTAACTTGAACAC+CGG - tig0022956:37067-37086 Msa1403430:three_prime_UTR 40.0%
TTTGATGTAAGCGCATGTGT+TGG - tig0022956:37151-37170 Msa1403430:CDS 40.0%
! CAGTGCTACTACATTGACAA+AGG - tig0022956:37203-37222 Msa1403430:CDS 40.0%
AAGTCTCCAAGTGCTTATGT+TGG - tig0022956:37648-37667 Msa1403430:intron 40.0%
AAGTCTTAAAGTGGGAACCT+TGG - tig0022956:37791-37810 Msa1403430:intron 40.0%
CTTGTGTAAAAAACAGGGGA+AGG - tig0022956:37877-37896 Msa1403430:intron 40.0%
CAATACACCAATTAGTGCAC+CGG - tig0022956:37907-37926 Msa1403430:intron 40.0%
AATACACCAATTAGTGCACC+GGG - tig0022956:37908-37927 Msa1403430:intron 40.0%
ACACCAAATGAAGAAGAAGG+AGG + tig0022956:36863-36882 None:intergenic 40.0%
! TGAAGCACTAACTTGAACAC+CGG - tig0022956:37067-37086 Msa1403430:three_prime_UTR 40.0%
TTTGATGTAAGCGCATGTGT+TGG - tig0022956:37151-37170 Msa1403430:CDS 40.0%
! CAGTGCTACTACATTGACAA+AGG - tig0022956:37203-37222 Msa1403430:CDS 40.0%
! GCGTATAGCTTTTAGCACAA+TGG + tig0022956:38659-38678 None:intergenic 40.0%
GGGGAATGACAGTTATATGA+AGG - tig0022956:38794-38813 Msa1403430:CDS 40.0%
GCTCCAATGCATGAACAAAT+AGG + tig0022956:39000-39019 None:intergenic 40.0%
TTCATGCATTGGAGCAACTA+TGG - tig0022956:39005-39024 Msa1403430:intron 40.0%
ATGCTCAAATCAATCGGAGA+AGG - tig0022956:39061-39080 Msa1403430:five_prime_UTR 40.0%
TGCTCAAATCAATCGGAGAA+GGG - tig0022956:39062-39081 Msa1403430:five_prime_UTR 40.0%
GCTTGAAGGAAATGAGGTTT+AGG - tig0022956:39156-39175 Msa1403430:intron 40.0%
GTGCATGTGTTAAAAGGCTA+AGG - tig0022956:39323-39342 Msa1403430:intron 40.0%
!!! CATCTGCTTTTTGTTCAGCT+TGG - tig0022956:39624-39643 Msa1403430:intron 40.0%
!! TGTTGTGGTTTTTGAAGGTG+TGG - tig0022956:39709-39728 Msa1403430:intron 40.0%
ATCAGCTCAGTCAAAACAGT+GGG + tig0022956:39819-39838 None:intergenic 40.0%
!!! GTTTTGACTGAGCTGATGAT+TGG - tig0022956:39822-39841 Msa1403430:intron 40.0%
!!! GGGACTTTTAGAGTGAAAAG+AGG - tig0022956:39891-39910 Msa1403430:intron 40.0%
!! AGTACAAAAGGCACTTCTCT+GGG + tig0022956:39996-40015 None:intergenic 40.0%
!! AAGTACAAAAGGCACTTCTC+TGG + tig0022956:39997-40016 None:intergenic 40.0%
!!! GAGAAGTGCCTTTTGTACTT+CGG - tig0022956:39997-40016 Msa1403430:intron 40.0%
GTTCTTTGCCGAAGTACAAA+AGG + tig0022956:40008-40027 None:intergenic 40.0%
!! GATCAGTGAAAAGCATCTTG+AGG + tig0022956:40117-40136 None:intergenic 40.0%
CCCCCAAAGAAGAAAAAGTT+TGG - tig0022956:40136-40155 Msa1403430:intron 40.0%
GGAGGGTTACTTAATCATGA+AGG + tig0022956:40214-40233 None:intergenic 40.0%
CATCTCTGTCTTTCTTGATC+AGG - tig0022956:40292-40311 Msa1403430:intron 40.0%
CAAATATGCTACCATACCCA+AGG + tig0022956:40361-40380 None:intergenic 40.0%
TGCTTCAGCTGTATATTTGG+TGG - tig0022956:40485-40504 Msa1403430:intron 40.0%
AGAAATGCTGGTAAGATGCA+TGG - tig0022956:40596-40615 Msa1403430:five_prime_UTR 40.0%
GAAATGCTGGTAAGATGCAT+GGG - tig0022956:40597-40616 Msa1403430:five_prime_UTR 40.0%
GGTAAGATGCATGGGATAAT+TGG - tig0022956:40605-40624 Msa1403430:five_prime_UTR 40.0%
ATTGGACCCCTGAATTGATA+TGG + tig0022956:40664-40683 None:intergenic 40.0%
! TCTTTTTCCTAGCTAGACAC+TGG - tig0022956:40769-40788 Msa1403430:intron 40.0%
TTTACAACCAGTGTCTAGCT+AGG + tig0022956:40779-40798 None:intergenic 40.0%
! TATTTGTTGCTGCATCATGG+TGG - tig0022956:40819-40838 Msa1403430:intron 40.0%
! TTGCTGAAACTGTTTCTTGC+TGG - tig0022956:41043-41062 Msa1403430:intron 40.0%
AAAGGCAAAATCAACCCCAA+AGG + tig0022956:41114-41133 None:intergenic 40.0%
CCACTTCCTATGAAGTGATT+TGG + tig0022956:41153-41172 None:intergenic 40.0%
CCAAATCACTTCATAGGAAG+TGG - tig0022956:41150-41169 Msa1403430:intron 40.0%
AATCACTTCATAGGAAGTGG+AGG - tig0022956:41153-41172 Msa1403430:intron 40.0%
GAAGGAAGAAGAAGAAGCAA+AGG - tig0022956:41189-41208 Msa1403430:intron 40.0%
! AGGTTTATCCTTTTCCTCAG+GGG + tig0022956:41242-41261 None:intergenic 40.0%
! CAGGTTTATCCTTTTCCTCA+GGG + tig0022956:41243-41262 None:intergenic 40.0%
! TCAGGTTTATCCTTTTCCTC+AGG + tig0022956:41244-41263 None:intergenic 40.0%
AGTCTCTCTTTCATCTCTGA+CGG + tig0022956:41274-41293 None:intergenic 40.0%
!! ACTTGGTGCAGGCAAATTTA+TGG + tig0022956:41398-41417 None:intergenic 40.0%
TGAAGAAAGTAAGGGTTTGG+TGG - tig0022956:41507-41526 Msa1403430:intron 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG - tig0022956:41548-41567 Msa1403430:five_prime_UTR 40.0%
!! AAAGGAGGGCTTTGGAAAAA+AGG - tig0022956:41581-41600 Msa1403430:five_prime_UTR 40.0%
!! AAGGAGGGCTTTGGAAAAAA+GGG - tig0022956:41582-41601 Msa1403430:five_prime_UTR 40.0%
GGAAAAAAGGGAAGAGTAAG+TGG - tig0022956:41594-41613 Msa1403430:five_prime_UTR 40.0%
GAAGAGCTTCTTAAGATGCT+CGG - tig0022956:41636-41655 Msa1403430:five_prime_UTR 40.0%
CTTAAGATGCTCGGATCTTA+CGG - tig0022956:41645-41664 Msa1403430:five_prime_UTR 40.0%
ACACAACCAACCCTTTCATA+GGG + tig0022956:41995-42014 None:intergenic 40.0%
AACACAACCAACCCTTTCAT+AGG + tig0022956:41996-42015 None:intergenic 40.0%
TGCCTCTAATAGAAACTACC+AGG + tig0022956:42031-42050 None:intergenic 40.0%
! TTCTTCCCTCTCTCCAATTT+TGG + tig0022956:42094-42113 None:intergenic 40.0%
TCGCCTCCTTCTTCTTCATT+TGG - tig0022956:36857-36876 Msa1403430:three_prime_UTR 45.0%
ACAAGTTTACTGTTGCGCCA+AGG + tig0022956:37811-37830 None:intergenic 45.0%
! CTTGTTGTCACGTGACTGAA+AGG - tig0022956:37826-37845 Msa1403430:intron 45.0%
TGTTTGAATAAAGGGCAGCC+CGG + tig0022956:37929-37948 None:intergenic 45.0%
TCGCCTCCTTCTTCTTCATT+TGG - tig0022956:36857-36876 Msa1403430:three_prime_UTR 45.0%
GTAGGCATACTGTTAGGTAC+CGG - tig0022956:38761-38780 Msa1403430:CDS 45.0%
TAGGCATACTGTTAGGTACC+GGG - tig0022956:38762-38781 Msa1403430:CDS 45.0%
!! TTAGGTACCGGGTTTGTTAG+AGG - tig0022956:38773-38792 Msa1403430:CDS 45.0%
!! TAGGTACCGGGTTTGTTAGA+GGG - tig0022956:38774-38793 Msa1403430:CDS 45.0%
TCATTCCCCTCTAACAAACC+CGG + tig0022956:38783-38802 None:intergenic 45.0%
AAGGATTGGGATAGTGAGAG+AGG - tig0022956:38813-38832 Msa1403430:CDS 45.0%
AGGATTGGGATAGTGAGAGA+GGG - tig0022956:38814-38833 Msa1403430:CDS 45.0%
TTCTCTGCCCAAACCTTCTA+AGG + tig0022956:38863-38882 None:intergenic 45.0%
AACACTGCTCCTTCAGAGAA+AGG + tig0022956:38889-38908 None:intergenic 45.0%
AGCAGTGTTGTGGGTAGTTA+GGG - tig0022956:38900-38919 Msa1403430:intron 45.0%
AAAGGACGTTGCAATAGGGA+AGG + tig0022956:38930-38949 None:intergenic 45.0%
! GTGCCCATGTTTGAAACCTT+TGG - tig0022956:39472-39491 Msa1403430:intron 45.0%
ACAGTGGGTCGGTAAATCAT+TGG + tig0022956:39804-39823 None:intergenic 45.0%
CATCAGCTCAGTCAAAACAG+TGG + tig0022956:39820-39839 None:intergenic 45.0%
ACTGAGCTGATGATTGGTAC+AGG - tig0022956:39828-39847 Msa1403430:intron 45.0%
GAAAAGAGGATGTTTGGCAG+CGG - tig0022956:39905-39924 Msa1403430:intron 45.0%
AGGTCGTCATCACTGATGAA+AGG - tig0022956:40056-40075 Msa1403430:intron 45.0%
!! AGTGAAAAGCATCTTGAGGG+CGG + tig0022956:40113-40132 None:intergenic 45.0%
TATGCTACCATACCCAAGGA+AGG + tig0022956:40357-40376 None:intergenic 45.0%
CATAGGAAGTGGAGGAGAAA+AGG - tig0022956:41161-41180 Msa1403430:intron 45.0%
ATTGGAACTAAATCCCCCTG+AGG - tig0022956:41225-41244 Msa1403430:intron 45.0%
ACTAAATCCCCCTGAGGAAA+AGG - tig0022956:41231-41250 Msa1403430:intron 45.0%
! GGTTTATCCTTTTCCTCAGG+GGG + tig0022956:41241-41260 None:intergenic 45.0%
!! CGAACAAGACAGTGTTGGTA+AGG - tig0022956:41453-41472 Msa1403430:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - tig0022956:41552-41571 Msa1403430:five_prime_UTR 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - tig0022956:41553-41572 Msa1403430:five_prime_UTR 45.0%
ACAACCAACCCTTTCATAGG+GGG + tig0022956:41993-42012 None:intergenic 45.0%
CACAACCAACCCTTTCATAG+GGG + tig0022956:41994-42013 None:intergenic 45.0%
GTGTCAATGTCGTGTCTGTC+CGG + tig0022956:37089-37108 None:intergenic 50.0%
CACGTGACTGAAAGGTAACG+AGG - tig0022956:37834-37853 Msa1403430:intron 50.0%
AAGGTAACGAGGTCAAGTCC+TGG - tig0022956:37845-37864 Msa1403430:intron 50.0%
GTGTCAATGTCGTGTCTGTC+CGG + tig0022956:37089-37108 None:intergenic 50.0%
GAGGTCATGGCTTGATACTC+TGG - tig0022956:38705-38724 Msa1403430:CDS 50.0%
!! AGGTACCGGGTTTGTTAGAG+GGG - tig0022956:38775-38794 Msa1403430:CDS 50.0%
! TCTCTGAAGGAGCAGTGTTG+TGG - tig0022956:38890-38909 Msa1403430:five_prime_UTR 50.0%
! CTCTGAAGGAGCAGTGTTGT+GGG - tig0022956:38891-38910 Msa1403430:five_prime_UTR 50.0%
GAGCAGTGTTGTGGGTAGTT+AGG - tig0022956:38899-38918 Msa1403430:intron 50.0%
TGGCTCTTACGTCATTGCCA+TGG - tig0022956:39644-39663 Msa1403430:intron 50.0%
GCTCAGTCAAAACAGTGGGT+CGG + tig0022956:39815-39834 None:intergenic 50.0%
! TTTTGCCTGCATGCCTTCCT+TGG - tig0022956:40341-40360 Msa1403430:intron 50.0%
TTTGCCTGCATGCCTTCCTT+GGG - tig0022956:40342-40361 Msa1403430:intron 50.0%
GGAGGAGAAAAGGAAGCAGA+AGG - tig0022956:41171-41190 Msa1403430:intron 50.0%
TCTTTCATCTCTGACGGCTG+GGG + tig0022956:41268-41287 None:intergenic 50.0%
CTCTTTCATCTCTGACGGCT+GGG + tig0022956:41269-41288 None:intergenic 50.0%
TCTCTTTCATCTCTGACGGC+TGG + tig0022956:41270-41289 None:intergenic 50.0%
! CCAACACTGTCTTGTTCGAC+TGG + tig0022956:41451-41470 None:intergenic 50.0%
CCAGTCGAACAAGACAGTGT+TGG - tig0022956:41448-41467 Msa1403430:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - tig0022956:41551-41570 Msa1403430:five_prime_UTR 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - tig0022956:41558-41577 Msa1403430:five_prime_UTR 50.0%
CTGTAGTACAGGGCTCTCAT+TGG - tig0022956:41705-41724 Msa1403430:five_prime_UTR 50.0%
CGACAGGTCAGTATCCTGTA+AGG + tig0022956:41769-41788 None:intergenic 50.0%
AATCTTCCCCTACGTCGAAG+CGG + tig0022956:41794-41813 None:intergenic 50.0%
ATGGCATCCCCCCTATGAAA+GGG - tig0022956:41982-42001 Msa1403430:five_prime_UTR 50.0%
CAACCAACCCTTTCATAGGG+GGG + tig0022956:41992-42011 None:intergenic 50.0%
TTGGTCGGAGACGGAATGGA+CGG + tig0022956:36827-36846 None:intergenic 55.0%
TTGGTCGGAGACGGAATGGA+CGG + tig0022956:36827-36846 None:intergenic 55.0%
AGAGGATGTTTGGCAGCGGA+AGG - tig0022956:39909-39928 Msa1403430:intron 55.0%
! CATACCCAAGGAAGGCATGC+AGG + tig0022956:40349-40368 None:intergenic 55.0%
CTGCATGCCTTCCTTGGGTA+TGG - tig0022956:40347-40366 Msa1403430:intron 55.0%
!! CCACTCGTGTTACTTGGTGC+AGG + tig0022956:41409-41428 None:intergenic 55.0%
CCTGCACCAAGTAACACGAG+TGG - tig0022956:41406-41425 Msa1403430:intron 55.0%
GCACCAAGTAACACGAGTGG+CGG - tig0022956:41409-41428 Msa1403430:intron 55.0%
! GAACCGCCACTCGTGTTACT+TGG + tig0022956:41415-41434 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - tig0022956:41557-41576 Msa1403430:five_prime_UTR 55.0%
GAGTTTGGAGGGGAAGGGAA+AGG - tig0022956:41563-41582 Msa1403430:five_prime_UTR 55.0%
TTTGGAGGGGAAGGGAAAGG+AGG - tig0022956:41566-41585 Msa1403430:five_prime_UTR 55.0%
TTGGAGGGGAAGGGAAAGGA+GGG - tig0022956:41567-41586 Msa1403430:five_prime_UTR 55.0%
ATCTTCCCCTACGTCGAAGC+GGG + tig0022956:41793-41812 None:intergenic 55.0%
GATGGCATCCCCCCTATGAA+AGG - tig0022956:41981-42000 Msa1403430:five_prime_UTR 55.0%
CATCCCCCCTATGAAAGGGT+TGG - tig0022956:41986-42005 Msa1403430:five_prime_UTR 55.0%
CAGCTTGGTCGGAGACGGAA+TGG + tig0022956:36831-36850 None:intergenic 60.0%
AGCAGCAGCTTGGTCGGAGA+CGG + tig0022956:36836-36855 None:intergenic 60.0%
CAGCTTGGTCGGAGACGGAA+TGG + tig0022956:36831-36850 None:intergenic 60.0%
AGCAGCAGCTTGGTCGGAGA+CGG + tig0022956:36836-36855 None:intergenic 60.0%
GGATGTTTGGCAGCGGAAGG+AGG - tig0022956:39912-39931 Msa1403430:intron 60.0%
TGTTTGGCAGCGGAAGGAGG+TGG - tig0022956:39915-39934 Msa1403430:intron 60.0%
ATCTCTGACGGCTGGGGATC+AGG + tig0022956:41262-41281 None:intergenic 60.0%
GGGAAGGGAAAGGAGGGCTT+TGG - tig0022956:41573-41592 Msa1403430:five_prime_UTR 60.0%
TGTCGTCCCGCTTCGACGTA+GGG - tig0022956:41784-41803 Msa1403430:five_prime_UTR 60.0%
! GAATGGACGGCGCCGGAGAT+GGG + tig0022956:36814-36833 None:intergenic 65.0%
GGCGACAGCAGCAGCTTGGT+CGG + tig0022956:36842-36861 None:intergenic 65.0%
AGGAGGCGACAGCAGCAGCT+TGG + tig0022956:36846-36865 None:intergenic 65.0%
GGGCAGCCCGGTGCACTAAT+TGG + tig0022956:37917-37936 None:intergenic 65.0%
! GAATGGACGGCGCCGGAGAT+GGG + tig0022956:36814-36833 None:intergenic 65.0%
GGCGACAGCAGCAGCTTGGT+CGG + tig0022956:36842-36861 None:intergenic 65.0%
AGGAGGCGACAGCAGCAGCT+TGG + tig0022956:36846-36865 None:intergenic 65.0%
CTACGTCGAAGCGGGACGAC+AGG + tig0022956:41785-41804 None:intergenic 65.0%
CTGTCGTCCCGCTTCGACGT+AGG - tig0022956:41783-41802 Msa1403430:five_prime_UTR 65.0%
GTCGTCCCGCTTCGACGTAG+GGG - tig0022956:41785-41804 Msa1403430:five_prime_UTR 65.0%
! GGAATGGACGGCGCCGGAGA+TGG + tig0022956:36815-36834 None:intergenic 70.0%
GGAGACGGAATGGACGGCGC+CGG + tig0022956:36821-36840 None:intergenic 70.0%
! GGAATGGACGGCGCCGGAGA+TGG + tig0022956:36815-36834 None:intergenic 70.0%
GGAGACGGAATGGACGGCGC+CGG + tig0022956:36821-36840 None:intergenic 70.0%
TCGCGCCGCCGTCCCATCTC+CGG - tig0022956:36799-36818 Msa1403430:three_prime_UTR 75.0%
! GGACGGCGCCGGAGATGGGA+CGG + tig0022956:36810-36829 None:intergenic 75.0%
TCGCGCCGCCGTCCCATCTC+CGG - tig0022956:36799-36818 Msa1403430:three_prime_UTR 75.0%
! GGACGGCGCCGGAGATGGGA+CGG + tig0022956:36810-36829 None:intergenic 75.0%
!! CGGCGCCGGAGATGGGACGG+CGG + tig0022956:36807-36826 None:intergenic 80.0%
!! CGGCGCCGGAGATGGGACGG+CGG + tig0022956:36807-36826 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0022956 gene 36629 42132 36629 ID=Msa1403430;Name=Msa1403430
tig0022956 mRNA 36629 42132 36629 ID=Msa1403430-mRNA-1;Parent=Msa1403430;Name=Msa1403430-mRNA-1;_AED=0.11;_eAED=0.11;_QI=836|1|1|1|0.5|0.42|7|520|264
tig0022956 exon 36629 37595 36629 ID=Msa1403430-mRNA-1:exon:19282;Parent=Msa1403430-mRNA-1
tig0022956 exon 38216 38268 38216 ID=Msa1403430-mRNA-1:exon:19281;Parent=Msa1403430-mRNA-1
tig0022956 exon 38398 38447 38398 ID=Msa1403430-mRNA-1:exon:19280;Parent=Msa1403430-mRNA-1
tig0022956 exon 38603 38911 38603 ID=Msa1403430-mRNA-1:exon:19279;Parent=Msa1403430-mRNA-1
tig0022956 exon 39036 39119 39036 ID=Msa1403430-mRNA-1:exon:19278;Parent=Msa1403430-mRNA-1
tig0022956 exon 40567 40658 40567 ID=Msa1403430-mRNA-1:exon:19277;Parent=Msa1403430-mRNA-1
tig0022956 exon 41537 42132 41537 ID=Msa1403430-mRNA-1:exon:19276;Parent=Msa1403430-mRNA-1
tig0022956 five_prime_UTR 41537 42132 41537 ID=Msa1403430-mRNA-1:five_prime_utr;Parent=Msa1403430-mRNA-1
tig0022956 five_prime_UTR 40567 40658 40567 ID=Msa1403430-mRNA-1:five_prime_utr;Parent=Msa1403430-mRNA-1
tig0022956 five_prime_UTR 39036 39119 39036 ID=Msa1403430-mRNA-1:five_prime_utr;Parent=Msa1403430-mRNA-1
tig0022956 five_prime_UTR 38848 38911 38848 ID=Msa1403430-mRNA-1:five_prime_utr;Parent=Msa1403430-mRNA-1
tig0022956 CDS 38603 38847 38603 ID=Msa1403430-mRNA-1:cds;Parent=Msa1403430-mRNA-1
tig0022956 CDS 38398 38447 38398 ID=Msa1403430-mRNA-1:cds;Parent=Msa1403430-mRNA-1
tig0022956 CDS 38216 38268 38216 ID=Msa1403430-mRNA-1:cds;Parent=Msa1403430-mRNA-1
tig0022956 CDS 37149 37595 37149 ID=Msa1403430-mRNA-1:cds;Parent=Msa1403430-mRNA-1
tig0022956 three_prime_UTR 36629 37148 36629 ID=Msa1403430-mRNA-1:three_prime_utr;Parent=Msa1403430-mRNA-1
Gene Sequence

>Msa1403430

ATGTTTGGCAGCGGAAGGAGGTGGTTGCGCTTTGTGCAATTCAAGCTTTATCCAACAACATCATTATGCAACAAATCTGCCCAGAGAAGTGCCTTTTGTACTTCGGCAAAGAACAACAACAACAACAACAACAACAATAACAAGGTCGTCATCACTGATGAAAGGTATCAGCAGCTCGAAAATCTCAACATGATGACCGCCCTCAAGATGCTTTTCACTGATCCCCCAAAGAAGAAAAAGTTTGGGTTTGATTTCCATCTTGTGCAATTTTTTTTTGCCTGCATGCCTTCCTTGGCTGTATATTTGGTGGCTCAGTACGCTCGTTATGAAATCAGAAGAATGGAAGCGGAAGTGGAGGAGAAAAGGAAGCAGAAGGAAGAAGAAGAAGCAAAGGAGAAAGAAAAAGAATTGGAACTAAATCCCCCTGAGGAAAAGGATAAACCTGATCCCCAGCCGTCAGAGATGAAAGAGAGACTTGAGAAACTTGAAGAGACTGTAAAGGAGATTGCTGTTGTAAAAAAGAAACAATCAACCAGTAACATAGACACAAATCAGGTAACTGGTGATGAGAAAAAAGCCATAAATTTGCCTGCACCAAGTAACACGAGTGGCGGTTCAGTAACTATTAAACCAGTCGAACAAGACAGTGTTGGTAAGGATAATTCTCTCAAGTCAAGGACAGAATTAGATGAAGAAAGTAAGGGTTTGGTGGCAACTCCAAGTTCTTTTCTTAGGCTTTGTTTGCGAGTTTGGAGGGGAAGGGAAAGGAGGGCTTTGGAAAAAAGGGAAGAGTAA
Protein sequence

>Msa1403430

MFGSGRRWLRFVQFKLYPTTSLCNKSAQRSAFCTSAKNNNNNNNNNNKVVITDERYQQLENLNMMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYEIRRMEAEVEEKRKQKEEEEAKEKEKELELNPPEEKDKPDPQPSEMKERLEKLEETVKEIAVVKKKQSTSNIDTNQVTGDEKKAINLPAPSNTSGGSVTIKPVEQDSVGKDNSLKSRTELDEESKGLVATPSSFLRLCLRVWRGRERRALEKREE*