AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0585500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585500 MtrunA17_Chr8g0360131 93.561 264 15 1 1 264 1 262 5.67e-157 437
Msa0585500 MtrunA17_Chr4g0001061 92.803 264 17 1 1 264 1 262 1.73e-153 428
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0585500 AT1G80700.1 43.030 165 91 2 13 177 14 175 7.45e-32 117
Msa0585500 AT1G80980.1 43.030 165 91 2 13 177 14 175 1.74e-31 116
Msa0585500 AT1G80980.2 43.030 165 91 2 13 177 14 175 1.74e-31 116

Find 144 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCCTCTCTCCAATTT+TGG 0.087432 4_2:-6447969 None:intergenic
CATTGACACCAGTAATATTT+TGG 0.133139 4_2:+6442992 Msa0585500:five_prime_UTR
CTGATTTGTGTCTATGTTAC+TGG 0.150398 4_2:-6447228 None:intergenic
ACTTGGTGCAGGCAAATTTA+TGG 0.177920 4_2:-6447273 None:intergenic
TACTGCTTCAGCTGTATATT+TGG 0.193771 4_2:+6446360 Msa0585500:intron
GATTTACATTATATCATCTA+TGG 0.201893 4_2:-6447947 None:intergenic
TTTAAATAAACTCAAGAAAT+AGG 0.209129 4_2:-6442894 None:intergenic
GTTATTAAATTATGCCTTAC+AGG 0.218554 4_2:+6447630 Msa0585500:three_prime_UTR
TTAGGCTTTGTTTGCGAGTT+TGG 0.237592 4_2:+6447426 Msa0585500:CDS
ATATAATGTAAATCCAAAAT+TGG 0.292860 4_2:+6447956 Msa0585500:three_prime_UTR
CTAAGACTCTGTTTGAATAA+AGG 0.295184 4_2:-6442497 None:intergenic
TAATAACTATTCTCTTCTTA+AGG 0.311256 4_2:-6447614 None:intergenic
TTAAATGGGAAAGCTATCTT+TGG 0.315145 4_2:+6447718 Msa0585500:three_prime_UTR
TCGCCTCCTTCTTCTTCATT+TGG 0.316559 4_2:+6442735 Msa0585500:five_prime_UTR
TCGCCTCCTTCTTCTTCATT+TGG 0.316559 4_2:+6444051 Msa0585500:five_prime_UTR
ATCTCTGACGGCTGGGGATC+AGG 0.320712 4_2:-6447137 None:intergenic
AAGAACTGAGATATTGAATA+TGG 0.322907 4_2:+6447987 Msa0585500:three_prime_UTR
GGGCAGCCCGGTGCACTAAT+TGG 0.330321 4_2:-6442476 None:intergenic
CTCTTTCATCTCTGACGGCT+GGG 0.331958 4_2:-6447144 None:intergenic
TAAGACTCTGTTTGAATAAA+GGG 0.342632 4_2:-6442496 None:intergenic
GTTGTCTTGAGATATTAATT+TGG 0.343264 4_2:+6447826 Msa0585500:three_prime_UTR
AACACAACCAACCCTTTCAT+AGG 0.356244 4_2:-6447871 None:intergenic
ATCCTGGTAGTTTCTATTAG+AGG 0.360493 4_2:+6447904 Msa0585500:three_prime_UTR
TAATTGAGTTGTTGAATTGA+TGG 0.362668 4_2:+6442866 Msa0585500:five_prime_UTR
AGAATTAGATGAAGAAAGTA+AGG 0.364259 4_2:+6447376 Msa0585500:CDS
TAGAGTGAAAAGAGGATGTT+TGG 0.377537 4_2:+6445777 Msa0585500:exon
AAGTACAAAAGGCACTTCTC+TGG 0.386193 4_2:-6445872 None:intergenic
GGGAAGGGAAAGGAGGGCTT+TGG 0.387355 4_2:+6447451 Msa0585500:CDS
TCTCTTTCATCTCTGACGGC+TGG 0.394697 4_2:-6447145 None:intergenic
TTTGCCTGCATGCCTTCCTT+GGG 0.414653 4_2:+6446220 Msa0585500:CDS
TTACACAAGATGTTGTTTCC+AGG 0.415881 4_2:-6442425 None:intergenic
TCGCGCCGCCGTCCCATCTC+CGG 0.418385 4_2:+6442677 Msa0585500:five_prime_UTR
TCGCGCCGCCGTCCCATCTC+CGG 0.418385 4_2:+6443993 Msa0585500:five_prime_UTR
ATAGACACAAATCAGGTAAC+TGG 0.424363 4_2:+6447236 Msa0585500:CDS
CTTAAGATGCTCGGATCTTA+CGG 0.429339 4_2:+6447523 Msa0585500:three_prime_UTR
AGATGAAGAAAGTAAGGGTT+TGG 0.431523 4_2:+6447382 Msa0585500:CDS
TGCTTCAGCTGTATATTTGG+TGG 0.443339 4_2:+6446363 Msa0585500:intron
GGCTTTGTTTGCGAGTTTGG+AGG 0.446379 4_2:+6447429 Msa0585500:CDS
TATATCATCTATGGGAAAGA+AGG 0.449994 4_2:-6447938 None:intergenic
TGTCGTCCCGCTTCGACGTA+GGG 0.452405 4_2:+6447662 Msa0585500:three_prime_UTR
CATAGGAAGTGGAGGAGAAA+AGG 0.454618 4_2:+6447039 Msa0585500:intron
TTTGGAGGGGAAGGGAAAGG+AGG 0.457429 4_2:+6447444 Msa0585500:CDS
GGCGACAGCAGCAGCTTGGT+CGG 0.471578 4_2:-6442717 None:intergenic
GGCGACAGCAGCAGCTTGGT+CGG 0.471578 4_2:-6444033 None:intergenic
GAACCGCCACTCGTGTTACT+TGG 0.471791 4_2:-6447290 None:intergenic
TTTATCAGAAGCTGTAGTAC+AGG 0.473889 4_2:+6447572 Msa0585500:three_prime_UTR
GTTCTTTGCCGAAGTACAAA+AGG 0.477015 4_2:-6445883 None:intergenic
TTGGAGGGGAAGGGAAAGGA+GGG 0.479070 4_2:+6447445 Msa0585500:CDS
GAGTTTGGAGGGGAAGGGAA+AGG 0.479638 4_2:+6447441 Msa0585500:CDS
GGAATGGACGGCGCCGGAGA+TGG 0.484068 4_2:-6442690 None:intergenic
GGAATGGACGGCGCCGGAGA+TGG 0.484068 4_2:-6444006 None:intergenic
CTGTCGTCCCGCTTCGACGT+AGG 0.484566 4_2:+6447661 Msa0585500:three_prime_UTR
CCAACACTGTCTTGTTCGAC+TGG 0.484860 4_2:-6447326 None:intergenic
TTGTTGCATAATGATGTTGT+TGG 0.492854 4_2:-6445843 None:intergenic
TACAATCATGTACAAAATGC+AGG 0.492925 4_2:+6447771 Msa0585500:three_prime_UTR
GAATGGACGGCGCCGGAGAT+GGG 0.493907 4_2:-6442689 None:intergenic
GAATGGACGGCGCCGGAGAT+GGG 0.493907 4_2:-6444005 None:intergenic
GAAGGAAGAAGAAGAAGCAA+AGG 0.498324 4_2:+6447067 Msa0585500:CDS
GGACGGCGCCGGAGATGGGA+CGG 0.500635 4_2:-6442685 None:intergenic
GGACGGCGCCGGAGATGGGA+CGG 0.500635 4_2:-6444001 None:intergenic
GCTTTGTTTGCGAGTTTGGA+GGG 0.504238 4_2:+6447430 Msa0585500:CDS
ATTTACATTATATCATCTAT+GGG 0.507836 4_2:-6447946 None:intergenic
AATTATGTTAATTTGTGTTG+TGG 0.510784 4_2:+6445572 Msa0585500:five_prime_UTR
CTGTAGTACAGGGCTCTCAT+TGG 0.513704 4_2:+6447583 Msa0585500:three_prime_UTR
AAATGAAGAAAACAGTGAAA+AGG 0.513995 4_2:-6442780 None:intergenic
CAGTAACATAGACACAAATC+AGG 0.516463 4_2:+6447229 Msa0585500:CDS
AAAACAGTGAAAAGGTGAAC+GGG 0.517671 4_2:-6442772 None:intergenic
ACACAACCAACCCTTTCATA+GGG 0.518373 4_2:-6447870 None:intergenic
GGAGGAGAAAAGGAAGCAGA+AGG 0.518581 4_2:+6447049 Msa0585500:CDS
ATCTTCCCCTACGTCGAAGC+GGG 0.519253 4_2:-6447668 None:intergenic
CAAAGCCTAAGAAAAGAACT+TGG 0.519757 4_2:-6447413 None:intergenic
AGGAGGCGACAGCAGCAGCT+TGG 0.521003 4_2:-6442721 None:intergenic
AGGAGGCGACAGCAGCAGCT+TGG 0.521003 4_2:-6444037 None:intergenic
GTAAATCCAAAATTGGAGAG+AGG 0.521722 4_2:+6447963 Msa0585500:three_prime_UTR
CGAACAAGACAGTGTTGGTA+AGG 0.522003 4_2:+6447331 Msa0585500:CDS
AGCAGCAGCTTGGTCGGAGA+CGG 0.524554 4_2:-6442711 None:intergenic
AGCAGCAGCTTGGTCGGAGA+CGG 0.524554 4_2:-6444027 None:intergenic
ATCAGTGAAAAGCATCTTGA+GGG 0.525145 4_2:-6445991 None:intergenic
GTGTCAATGTCGTGTCTGTC+CGG 0.525332 4_2:-6442964 None:intergenic
TCTTTCATCTCTGACGGCTG+GGG 0.525585 4_2:-6447143 None:intergenic
CAGCTTGGTCGGAGACGGAA+TGG 0.526153 4_2:-6442706 None:intergenic
CAGCTTGGTCGGAGACGGAA+TGG 0.526153 4_2:-6444022 None:intergenic
GTTTGCGAGTTTGGAGGGGA+AGG 0.529856 4_2:+6447435 Msa0585500:CDS
CATACCCAAGGAAGGCATGC+AGG 0.531730 4_2:-6446224 None:intergenic
TTTGCGAGTTTGGAGGGGAA+GGG 0.538653 4_2:+6447436 Msa0585500:CDS
AGTACAAAAGGCACTTCTCT+GGG 0.539480 4_2:-6445871 None:intergenic
TGGAAGAAATAGAATCAAAG+TGG 0.539659 4_2:+6447492 Msa0585500:three_prime_UTR
CTACGTCGAAGCGGGACGAC+AGG 0.544058 4_2:-6447660 None:intergenic
GAAACTTGAAGAGACTGTAA+AGG 0.544551 4_2:+6447175 Msa0585500:CDS
TGGCTCTTACGTCATTGCCA+TGG 0.545765 4_2:+6445522 Msa0585500:five_prime_UTR
CGACAGGTCAGTATCCTGTA+AGG 0.546399 4_2:-6447644 None:intergenic
TGAAGAAAGTAAGGGTTTGG+TGG 0.546548 4_2:+6447385 Msa0585500:CDS
CACAACCAACCCTTTCATAG+GGG 0.547523 4_2:-6447869 None:intergenic
ATATTAATTTGGATGCATCA+TGG 0.547697 4_2:+6447837 Msa0585500:three_prime_UTR
ATCTCAAGACAACATGATCA+TGG 0.548295 4_2:-6447816 None:intergenic
CAATACACCAATTAGTGCAC+CGG 0.550086 4_2:+6442469 Msa0585500:five_prime_UTR
TTTGAATTTGAAGAATGAGT+TGG 0.555218 4_2:+6445546 Msa0585500:five_prime_UTR
AACACACCAAATGAAGAAGA+AGG 0.555461 4_2:-6442741 None:intergenic
AACACACCAAATGAAGAAGA+AGG 0.555461 4_2:-6444057 None:intergenic
AGTCTCTCTTTCATCTCTGA+CGG 0.555990 4_2:-6447149 None:intergenic
TAAATCCAAAATTGGAGAGA+GGG 0.559542 4_2:+6447964 Msa0585500:three_prime_UTR
TAATTTGGATGCATCATGGA+TGG 0.562689 4_2:+6447841 Msa0585500:three_prime_UTR
GGAGACGGAATGGACGGCGC+CGG 0.563890 4_2:-6442696 None:intergenic
GGAGACGGAATGGACGGCGC+CGG 0.563890 4_2:-6444012 None:intergenic
TCGTTATGAAATCAGAAGAA+TGG 0.565432 4_2:+6446396 Msa0585500:CDS
TGTTTGGCAGCGGAAGGAGG+TGG 0.566252 4_2:+6445793 Msa0585500:CDS
AGAGGATGTTTGGCAGCGGA+AGG 0.574708 4_2:+6445787 Msa0585500:exon
CTTTGTTTGCGAGTTTGGAG+GGG 0.576812 4_2:+6447431 Msa0585500:CDS
AAGGTAACGAGGTCAAGTCC+TGG 0.579382 4_2:+6442407 Msa0585500:five_prime_UTR
ATTCTTCAAATTCAAAACCA+TGG 0.584762 4_2:-6445539 None:intergenic
CCACTCGTGTTACTTGGTGC+AGG 0.587465 4_2:-6447284 None:intergenic
TTATCAGAAGCTGTAGTACA+GGG 0.588108 4_2:+6447573 Msa0585500:three_prime_UTR
GAATTAGATGAAGAAAGTAA+GGG 0.596191 4_2:+6447377 Msa0585500:CDS
TGTTTGAATAAAGGGCAGCC+CGG 0.597199 4_2:-6442488 None:intergenic
AGGATAATTCTCTCAAGTCA+AGG 0.597590 4_2:+6447351 Msa0585500:CDS
TGAAATCAGAAGAATGGAAG+CGG 0.598870 4_2:+6446402 Msa0585500:CDS
GAAGAGCTTCTTAAGATGCT+CGG 0.605978 4_2:+6447514 Msa0585500:three_prime_UTR
TTGGTCGGAGACGGAATGGA+CGG 0.606586 4_2:-6442702 None:intergenic
TTGGTCGGAGACGGAATGGA+CGG 0.606586 4_2:-6444018 None:intergenic
GATCAGTGAAAAGCATCTTG+AGG 0.607209 4_2:-6445992 None:intergenic
TTTGATGTAAGCGCATGTGT+TGG 0.607377 4_2:+6443029 Msa0585500:five_prime_UTR
GAAAACAGTGAAAAGGTGAA+CGG 0.609272 4_2:-6442773 None:intergenic
AATCTTCCCCTACGTCGAAG+CGG 0.610882 4_2:-6447669 None:intergenic
GAAAAGAGGATGTTTGGCAG+CGG 0.612545 4_2:+6445783 Msa0585500:exon
GTCGTCCCGCTTCGACGTAG+GGG 0.613186 4_2:+6447663 Msa0585500:three_prime_UTR
TGCCTCTAATAGAAACTACC+AGG 0.613860 4_2:-6447906 None:intergenic
GGATGTTTGGCAGCGGAAGG+AGG 0.614484 4_2:+6445790 Msa0585500:exon
AGGTCGTCATCACTGATGAA+AGG 0.615459 4_2:+6445934 Msa0585500:CDS
CGGCGCCGGAGATGGGACGG+CGG 0.616361 4_2:-6442682 None:intergenic
CGGCGCCGGAGATGGGACGG+CGG 0.616361 4_2:-6443998 None:intergenic
AATACACCAATTAGTGCACC+GGG 0.623884 4_2:+6442470 Msa0585500:five_prime_UTR
TGAAGCACTAACTTGAACAC+CGG 0.633817 4_2:+6442945 Msa0585500:five_prime_UTR
ACAACCAACCCTTTCATAGG+GGG 0.639922 4_2:-6447868 None:intergenic
AATCACTTCATAGGAAGTGG+AGG 0.644797 4_2:+6447031 Msa0585500:intron
CCAGTCGAACAAGACAGTGT+TGG 0.650294 4_2:+6447326 Msa0585500:CDS
TATGCTACCATACCCAAGGA+AGG 0.656747 4_2:-6446232 None:intergenic
CAGTGCTACTACATTGACAA+AGG 0.670029 4_2:+6443081 Msa0585500:five_prime_UTR
AGTGAAAAGCATCTTGAGGG+CGG 0.673957 4_2:-6445988 None:intergenic
GCACCAAGTAACACGAGTGG+CGG 0.675884 4_2:+6447287 Msa0585500:CDS
CAACCAACCCTTTCATAGGG+GGG 0.678283 4_2:-6447867 None:intergenic
ACACCAAATGAAGAAGAAGG+AGG 0.682145 4_2:-6442738 None:intergenic
ACACCAAATGAAGAAGAAGG+AGG 0.682145 4_2:-6444054 None:intergenic
CACGTGACTGAAAGGTAACG+AGG 0.688937 4_2:+6442396 None:intergenic
CCTGCACCAAGTAACACGAG+TGG 0.723363 4_2:+6447284 Msa0585500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTGATTTTTTAAAATTA+AGG + chr4_2:6443347-6443366 Msa0585500:intron 10.0%
!!! AGAATTTCTATTTATATTTT+TGG - chr4_2:6446143-6446162 None:intergenic 10.0%
!!! TTTTACTAATACTATTTATT+AGG + chr4_2:6446862-6446881 Msa0585500:intron 10.0%
!! CAAAATGAAAAAAATAGATA+AGG - chr4_2:6442819-6442838 None:intergenic 15.0%
!! TTTAAATAAACTCAAGAAAT+AGG - chr4_2:6442897-6442916 None:intergenic 15.0%
!!! ATATAAAGAATCTTTTTGAT+TGG - chr4_2:6443570-6443589 None:intergenic 15.0%
!!! TTTATATTTTGTTATAGACA+TGG + chr4_2:6443583-6443602 Msa0585500:intron 15.0%
!! CAAAATGAAAAAAATAGATA+AGG - chr4_2:6442819-6442838 None:intergenic 15.0%
!! TTTAAATAAACTCAAGAAAT+AGG - chr4_2:6442897-6442916 None:intergenic 15.0%
!!! TAAAAGCTTTTTAAGTTTTA+AGG + chr4_2:6445098-6445117 Msa0585500:intron 15.0%
!!! TATGTTTTGTAACAATTTTT+TGG + chr4_2:6445642-6445661 Msa0585500:intron 15.0%
!!! CTAATTTTTTATCATTTCAT+TGG - chr4_2:6445747-6445766 None:intergenic 15.0%
!! AAATTAAAAGATCATCAAAA+GGG - chr4_2:6446049-6446068 None:intergenic 15.0%
!! AAAATTAAAAGATCATCAAA+AGG - chr4_2:6446050-6446069 None:intergenic 15.0%
!! AATGAATTCTATATAATGTT+TGG + chr4_2:6446796-6446815 Msa0585500:intron 15.0%
!! ATTTACATTATATCATCTAT+GGG - chr4_2:6447949-6447968 None:intergenic 15.0%
!! ATATAATGTAAATCCAAAAT+TGG + chr4_2:6447956-6447975 Msa0585500:three_prime_UTR 15.0%
!!! CTGATTTTTTAAAATTAAGG+TGG + chr4_2:6443350-6443369 Msa0585500:intron 20.0%
!!! AGTTAAACTGTTTTTTGTAT+AGG + chr4_2:6443403-6443422 Msa0585500:intron 20.0%
!!! TGTATTATTGATGATGAAAA+AGG - chr4_2:6444826-6444845 None:intergenic 20.0%
!!! AATTATGTTAATTTGTGTTG+TGG + chr4_2:6445572-6445591 Msa0585500:five_prime_UTR 20.0%
!! TGAAATGATAAAAAATTAGC+TGG + chr4_2:6445748-6445767 Msa0585500:five_prime_UTR 20.0%
!! GAAATGATAAAAAATTAGCT+GGG + chr4_2:6445749-6445768 Msa0585500:five_prime_UTR 20.0%
!! AATTAAAAGATCATCAAAAG+GGG - chr4_2:6446048-6446067 None:intergenic 20.0%
!!! AAATTTTACCATATCAATTC+AGG + chr4_2:6446531-6446550 Msa0585500:intron 20.0%
!!! AATTTTACCATATCAATTCA+GGG + chr4_2:6446532-6446551 Msa0585500:intron 20.0%
!! TAAAAAAGGATATATAATCC+AGG - chr4_2:6446900-6446919 None:intergenic 20.0%
!! AAATAATACTATCATCCTTT+GGG + chr4_2:6446974-6446993 Msa0585500:intron 20.0%
!! TAATAACTATTCTCTTCTTA+AGG - chr4_2:6447617-6447636 None:intergenic 20.0%
!!! AAGATTTTGAGTTTATTGTA+AGG + chr4_2:6447686-6447705 Msa0585500:three_prime_UTR 20.0%
!!! TAAGGAAGGAAATTTTAAAT+GGG + chr4_2:6447704-6447723 Msa0585500:three_prime_UTR 20.0%
!! GATTTACATTATATCATCTA+TGG - chr4_2:6447950-6447969 None:intergenic 20.0%
! AACATCTTGTGTAAAAAACA+GGG + chr4_2:6442434-6442453 Msa0585500:five_prime_UTR 25.0%
! TAAGACTCTGTTTGAATAAA+GGG - chr4_2:6442499-6442518 None:intergenic 25.0%
! AAATGAAGAAAACAGTGAAA+AGG - chr4_2:6442783-6442802 None:intergenic 25.0%
!! TAATTGAGTTGTTGAATTGA+TGG + chr4_2:6442866-6442885 Msa0585500:five_prime_UTR 25.0%
!! CGATTTTTCCAAAATATTAC+TGG - chr4_2:6443003-6443022 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG - chr4_2:6443226-6443245 None:intergenic 25.0%
! TGTCTATAACAAAAGATGAA+GGG - chr4_2:6443262-6443281 None:intergenic 25.0%
! ATGTCTATAACAAAAGATGA+AGG - chr4_2:6443263-6443282 None:intergenic 25.0%
! ATTCAAACAAAGTCTTAAAG+TGG + chr4_2:6443660-6443679 Msa0585500:intron 25.0%
! TTCAAACAAAGTCTTAAAGT+GGG + chr4_2:6443661-6443680 Msa0585500:intron 25.0%
! AACATCTTGTGTAAAAAACA+GGG + chr4_2:6442434-6442453 Msa0585500:five_prime_UTR 25.0%
! TAAGACTCTGTTTGAATAAA+GGG - chr4_2:6442499-6442518 None:intergenic 25.0%
! AAATGAAGAAAACAGTGAAA+AGG - chr4_2:6442783-6442802 None:intergenic 25.0%
!! TAATTGAGTTGTTGAATTGA+TGG + chr4_2:6442866-6442885 Msa0585500:five_prime_UTR 25.0%
!! CGATTTTTCCAAAATATTAC+TGG - chr4_2:6443003-6443022 None:intergenic 25.0%
!!! GAGTTTTTATTTTCTTGAAG+AGG + chr4_2:6444564-6444583 Msa0585500:intron 25.0%
! ATATAGATGCTCAAATCAAT+CGG + chr4_2:6444933-6444952 Msa0585500:intron 25.0%
! AGTATATCAATTATGCTTGA+AGG + chr4_2:6445020-6445039 Msa0585500:intron 25.0%
! AAGGATGTGAAGTATAATAA+AGG + chr4_2:6445117-6445136 Msa0585500:intron 25.0%
! AGGATGTGAAGTATAATAAA+GGG + chr4_2:6445118-6445137 Msa0585500:intron 25.0%
! ATTCCTAATTTCTATTGTCA+TGG + chr4_2:6445147-6445166 Msa0585500:intron 25.0%
! AGGAATTAGGCAAAATAATT+AGG + chr4_2:6445221-6445240 Msa0585500:intron 25.0%
! TATATATTTATGTGTGTGAC+TGG + chr4_2:6445312-6445331 Msa0585500:intron 25.0%
! CCATAATTTATTTATGCCAA+AGG - chr4_2:6445369-6445388 None:intergenic 25.0%
! CCTTTGGCATAAATAAATTA+TGG + chr4_2:6445366-6445385 Msa0585500:intron 25.0%
! ATTCTTCAAATTCAAAACCA+TGG - chr4_2:6445542-6445561 None:intergenic 25.0%
! TTTGAATTTGAAGAATGAGT+TGG + chr4_2:6445546-6445565 Msa0585500:five_prime_UTR 25.0%
! TAAATCATTGGTCAAATCAA+TGG - chr4_2:6445670-6445689 None:intergenic 25.0%
! TAAACATTGTAACCAAATAC+AGG - chr4_2:6446113-6446132 None:intergenic 25.0%
! GTATTTGGTTACAATGTTTA+TGG + chr4_2:6446113-6446132 Msa0585500:intron 25.0%
! CAAAAAAAAATTGCACAAGA+TGG - chr4_2:6446204-6446223 None:intergenic 25.0%
! AATTCACTCTTACATTACAA+AGG - chr4_2:6446441-6446460 None:intergenic 25.0%
!! ATTTTACCATATCAATTCAG+GGG + chr4_2:6446533-6446552 Msa0585500:intron 25.0%
!! CCATAAAGAGTACATTAAAT+TGG - chr4_2:6446560-6446579 None:intergenic 25.0%
! CCAATTTAATGTACTCTTTA+TGG + chr4_2:6446557-6446576 Msa0585500:intron 25.0%
! ACAGTTTCAGCAAATAAAAA+AGG - chr4_2:6446914-6446933 None:intergenic 25.0%
! GAAATAATACTATCATCCTT+TGG + chr4_2:6446973-6446992 Msa0585500:intron 25.0%
! AATAATACTATCATCCTTTG+GGG + chr4_2:6446975-6446994 Msa0585500:intron 25.0%
! GGAGAAAATTCATTATCAAA+AGG - chr4_2:6447010-6447029 None:intergenic 25.0%
! AAAGGAGAAAGAAAAAGAAT+TGG + chr4_2:6447085-6447104 Msa0585500:CDS 25.0%
! AGAATTAGATGAAGAAAGTA+AGG + chr4_2:6447376-6447395 Msa0585500:CDS 25.0%
! GAATTAGATGAAGAAAGTAA+GGG + chr4_2:6447377-6447396 Msa0585500:CDS 25.0%
! GTTATTAAATTATGCCTTAC+AGG + chr4_2:6447630-6447649 Msa0585500:three_prime_UTR 25.0%
!!! TTTTGAGTTTATTGTAAGGA+AGG + chr4_2:6447690-6447709 Msa0585500:three_prime_UTR 25.0%
!! GTAAGGAAGGAAATTTTAAA+TGG + chr4_2:6447703-6447722 Msa0585500:three_prime_UTR 25.0%
! GTTGTCTTGAGATATTAATT+TGG + chr4_2:6447826-6447845 Msa0585500:three_prime_UTR 25.0%
!! ATATTAATTTGGATGCATCA+TGG + chr4_2:6447837-6447856 Msa0585500:three_prime_UTR 25.0%
! AAGAACTGAGATATTGAATA+TGG + chr4_2:6447987-6448006 Msa0585500:three_prime_UTR 25.0%
CAACATCTTGTGTAAAAAAC+AGG + chr4_2:6442433-6442452 Msa0585500:five_prime_UTR 30.0%
ACATCTTGTGTAAAAAACAG+GGG + chr4_2:6442435-6442454 Msa0585500:five_prime_UTR 30.0%
CTAAGACTCTGTTTGAATAA+AGG - chr4_2:6442500-6442519 None:intergenic 30.0%
!! CATTTTGTTTCATGCGATTT+TGG + chr4_2:6442832-6442851 Msa0585500:five_prime_UTR 30.0%
! CATTGACACCAGTAATATTT+TGG + chr4_2:6442992-6443011 Msa0585500:five_prime_UTR 30.0%
AGTAAACAATGCATTATGTG+AGG - chr4_2:6443119-6443138 None:intergenic 30.0%
TATCTACTGGTATAAGCAAT+TGG - chr4_2:6443213-6443232 None:intergenic 30.0%
ATTCAGATGAAGACAATGTT+AGG - chr4_2:6443309-6443328 None:intergenic 30.0%
CAACATCTTGTGTAAAAAAC+AGG + chr4_2:6442433-6442452 Msa0585500:five_prime_UTR 30.0%
ACATCTTGTGTAAAAAACAG+GGG + chr4_2:6442435-6442454 Msa0585500:five_prime_UTR 30.0%
CTAAGACTCTGTTTGAATAA+AGG - chr4_2:6442500-6442519 None:intergenic 30.0%
!! CATTTTGTTTCATGCGATTT+TGG + chr4_2:6442832-6442851 Msa0585500:five_prime_UTR 30.0%
! CATTGACACCAGTAATATTT+TGG + chr4_2:6442992-6443011 Msa0585500:five_prime_UTR 30.0%
AGTAAACAATGCATTATGTG+AGG - chr4_2:6443119-6443138 None:intergenic 30.0%
! TTATTTTCTTGAAGAGGTCA+TGG + chr4_2:6444570-6444589 Msa0585500:intron 30.0%
TCAACATTAGGAGAAATTGT+AGG + chr4_2:6444621-6444640 Msa0585500:intron 30.0%
ATGACAGTTATATGAAGGAT+TGG + chr4_2:6444677-6444696 Msa0585500:intron 30.0%
TGACAGTTATATGAAGGATT+GGG + chr4_2:6444678-6444697 Msa0585500:intron 30.0%
! TTTTCAGTTACAACCTTAGA+AGG + chr4_2:6444725-6444744 Msa0585500:intron 30.0%
ATTCCTATTTGTTCATGCAT+TGG + chr4_2:6444872-6444891 Msa0585500:intron 30.0%
AATTATGCTTGAAGGAAATG+AGG + chr4_2:6445028-6445047 Msa0585500:intron 30.0%
!!! TGTCATTTTTATCTCCTATC+GGG - chr4_2:6445077-6445096 None:intergenic 30.0%
!!! CTGTCATTTTTATCTCCTAT+CGG - chr4_2:6445078-6445097 None:intergenic 30.0%
AGTCCATGACAATAGAAATT+AGG - chr4_2:6445153-6445172 None:intergenic 30.0%
ATATGTGTGCATGTGTTAAA+AGG + chr4_2:6445195-6445214 Msa0585500:intron 30.0%
TGTTAAAAGGCTAAGGAATT+AGG + chr4_2:6445208-6445227 Msa0585500:intron 30.0%
! ATTTGTGTTGTGGTTTTTGA+AGG + chr4_2:6445582-6445601 Msa0585500:five_prime_UTR 30.0%
TTGTTGCATAATGATGTTGT+TGG - chr4_2:6445846-6445865 None:intergenic 30.0%
CAACAACAACAACAATAACA+AGG + chr4_2:6445914-6445933 Msa0585500:CDS 30.0%
!! ACCCAAACTTTTTCTTCTTT+GGG - chr4_2:6446019-6446038 None:intergenic 30.0%
!! TACCCAAACTTTTTCTTCTT+TGG - chr4_2:6446020-6446039 None:intergenic 30.0%
TCGTTATGAAATCAGAAGAA+TGG + chr4_2:6446396-6446415 Msa0585500:CDS 30.0%
TTTGTGCATTATAGAAATGC+TGG + chr4_2:6446462-6446481 Msa0585500:intron 30.0%
CACTTAAGTTACAACCTAAA+GGG - chr4_2:6446585-6446604 None:intergenic 30.0%
ACACTTAAGTTACAACCTAA+AGG - chr4_2:6446586-6446605 None:intergenic 30.0%
! AATTATTTGTTGCTGCATCA+TGG + chr4_2:6446694-6446713 Msa0585500:intron 30.0%
! ATTAGGAGTATAATATGTCC+TGG + chr4_2:6446879-6446898 Msa0585500:intron 30.0%
CTGGTACTTTGTGAATAAAA+GGG + chr4_2:6446940-6446959 Msa0585500:intron 30.0%
! TTTTCTCCAAATCACTTCAT+AGG + chr4_2:6447022-6447041 Msa0585500:intron 30.0%
TGGAAGAAATAGAATCAAAG+TGG + chr4_2:6447492-6447511 Msa0585500:three_prime_UTR 30.0%
TTAAATGGGAAAGCTATCTT+TGG + chr4_2:6447718-6447737 Msa0585500:three_prime_UTR 30.0%
TACAATCATGTACAAAATGC+AGG + chr4_2:6447771-6447790 Msa0585500:three_prime_UTR 30.0%
TATATCATCTATGGGAAAGA+AGG - chr4_2:6447941-6447960 None:intergenic 30.0%
TAAATCCAAAATTGGAGAGA+GGG + chr4_2:6447964-6447983 Msa0585500:three_prime_UTR 30.0%
!! TTACACAAGATGTTGTTTCC+AGG - chr4_2:6442428-6442447 None:intergenic 35.0%
AACACACCAAATGAAGAAGA+AGG - chr4_2:6442744-6442763 None:intergenic 35.0%
AAAACAGTGAAAAGGTGAAC+GGG - chr4_2:6442775-6442794 None:intergenic 35.0%
GAAAACAGTGAAAAGGTGAA+CGG - chr4_2:6442776-6442795 None:intergenic 35.0%
! ATAAGCACTTGGAGACTTTT+TGG - chr4_2:6443524-6443543 None:intergenic 35.0%
TATCTACCAACATAAGCACT+TGG - chr4_2:6443535-6443554 None:intergenic 35.0%
!! TTACACAAGATGTTGTTTCC+AGG - chr4_2:6442428-6442447 None:intergenic 35.0%
AACACACCAAATGAAGAAGA+AGG - chr4_2:6442744-6442763 None:intergenic 35.0%
AAAACAGTGAAAAGGTGAAC+GGG - chr4_2:6442775-6442794 None:intergenic 35.0%
GAAAACAGTGAAAAGGTGAA+CGG - chr4_2:6442776-6442795 None:intergenic 35.0%
! CGTATAGCTTTTAGCACAAT+GGG - chr4_2:6444536-6444555 None:intergenic 35.0%
AGCTAATAGTCGTCAACATT+AGG + chr4_2:6444609-6444628 Msa0585500:intron 35.0%
GAAATTGTAGGCATACTGTT+AGG + chr4_2:6444633-6444652 Msa0585500:intron 35.0%
AGTTACAACCTTAGAAGGTT+TGG + chr4_2:6444730-6444749 Msa0585500:intron 35.0%
GTTACAACCTTAGAAGGTTT+GGG + chr4_2:6444731-6444750 Msa0585500:intron 35.0%
AGAGAAATTCCTTTCTCTGA+AGG + chr4_2:6444755-6444774 Msa0585500:intron 35.0%
TGAAAAAGGACGTTGCAATA+GGG - chr4_2:6444812-6444831 None:intergenic 35.0%
ATGAAAAAGGACGTTGCAAT+AGG - chr4_2:6444813-6444832 None:intergenic 35.0%
!!! CCTTCTCTTGTCGATTTTAA+TGG - chr4_2:6444911-6444930 None:intergenic 35.0%
CCATTAAAATCGACAAGAGA+AGG + chr4_2:6444908-6444927 Msa0585500:intron 35.0%
AGATATGTATTACACCCGAT+AGG + chr4_2:6445060-6445079 Msa0585500:intron 35.0%
ATGCCAAAGGTTTCAAACAT+GGG - chr4_2:6445356-6445375 None:intergenic 35.0%
TATGCCAAAGGTTTCAAACA+TGG - chr4_2:6445357-6445376 None:intergenic 35.0%
TAGAGTGAAAAGAGGATGTT+TGG + chr4_2:6445777-6445796 Msa0585500:exon 35.0%
!! ATCAGTGAAAAGCATCTTGA+GGG - chr4_2:6445994-6446013 None:intergenic 35.0%
!! CCAAACTTTTTCTTCTTTGG+GGG - chr4_2:6446017-6446036 None:intergenic 35.0%
!! CCCAAACTTTTTCTTCTTTG+GGG - chr4_2:6446018-6446037 None:intergenic 35.0%
CCCCAAAGAAGAAAAAGTTT+GGG + chr4_2:6446015-6446034 Msa0585500:CDS 35.0%
TTAAGTAACCCTCCTGTATT+TGG + chr4_2:6446098-6446117 Msa0585500:intron 35.0%
CATTGTAACCAAATACAGGA+GGG - chr4_2:6446109-6446128 None:intergenic 35.0%
ACATTGTAACCAAATACAGG+AGG - chr4_2:6446110-6446129 None:intergenic 35.0%
ATAAGCTCAAGTTCAATGCT+TGG - chr4_2:6446272-6446291 None:intergenic 35.0%
TACTGCTTCAGCTGTATATT+TGG + chr4_2:6446360-6446379 Msa0585500:intron 35.0%
TGAAATCAGAAGAATGGAAG+CGG + chr4_2:6446402-6446421 Msa0585500:CDS 35.0%
TACTCTTTATGGAACCCTTT+AGG + chr4_2:6446568-6446587 Msa0585500:intron 35.0%
TGCTGAACTCATGAGATATA+TGG + chr4_2:6446827-6446846 Msa0585500:intron 35.0%
GCTGAACTCATGAGATATAT+GGG + chr4_2:6446828-6446847 Msa0585500:intron 35.0%
CTGAACTCATGAGATATATG+GGG + chr4_2:6446829-6446848 Msa0585500:intron 35.0%
GCTGGTACTTTGTGAATAAA+AGG + chr4_2:6446939-6446958 Msa0585500:intron 35.0%
GAAACTTGAAGAGACTGTAA+AGG + chr4_2:6447175-6447194 Msa0585500:CDS 35.0%
! CTGATTTGTGTCTATGTTAC+TGG - chr4_2:6447231-6447250 None:intergenic 35.0%
CAGTAACATAGACACAAATC+AGG + chr4_2:6447229-6447248 Msa0585500:CDS 35.0%
ATAGACACAAATCAGGTAAC+TGG + chr4_2:6447236-6447255 Msa0585500:CDS 35.0%
AGGATAATTCTCTCAAGTCA+AGG + chr4_2:6447351-6447370 Msa0585500:CDS 35.0%
AGATGAAGAAAGTAAGGGTT+TGG + chr4_2:6447382-6447401 Msa0585500:CDS 35.0%
! CAACTCCAAGTTCTTTTCTT+AGG + chr4_2:6447408-6447427 Msa0585500:CDS 35.0%
CAAAGCCTAAGAAAAGAACT+TGG - chr4_2:6447416-6447435 None:intergenic 35.0%
TTTATCAGAAGCTGTAGTAC+AGG + chr4_2:6447572-6447591 Msa0585500:three_prime_UTR 35.0%
TTATCAGAAGCTGTAGTACA+GGG + chr4_2:6447573-6447592 Msa0585500:three_prime_UTR 35.0%
ATCTCAAGACAACATGATCA+TGG - chr4_2:6447819-6447838 None:intergenic 35.0%
TAATTTGGATGCATCATGGA+TGG + chr4_2:6447841-6447860 Msa0585500:three_prime_UTR 35.0%
!!! TGTGTTTTGACTGAAAATCC+TGG + chr4_2:6447888-6447907 Msa0585500:three_prime_UTR 35.0%
ATCCTGGTAGTTTCTATTAG+AGG + chr4_2:6447904-6447923 Msa0585500:three_prime_UTR 35.0%
GTAAATCCAAAATTGGAGAG+AGG + chr4_2:6447963-6447982 Msa0585500:three_prime_UTR 35.0%
CTTGTGTAAAAAACAGGGGA+AGG + chr4_2:6442439-6442458 Msa0585500:five_prime_UTR 40.0%
CAATACACCAATTAGTGCAC+CGG + chr4_2:6442469-6442488 Msa0585500:five_prime_UTR 40.0%
AATACACCAATTAGTGCACC+GGG + chr4_2:6442470-6442489 Msa0585500:five_prime_UTR 40.0%
ACACCAAATGAAGAAGAAGG+AGG - chr4_2:6442741-6442760 None:intergenic 40.0%
! TGAAGCACTAACTTGAACAC+CGG + chr4_2:6442945-6442964 Msa0585500:five_prime_UTR 40.0%
TTTGATGTAAGCGCATGTGT+TGG + chr4_2:6443029-6443048 Msa0585500:five_prime_UTR 40.0%
! CAGTGCTACTACATTGACAA+AGG + chr4_2:6443081-6443100 Msa0585500:five_prime_UTR 40.0%
AAGTCTCCAAGTGCTTATGT+TGG + chr4_2:6443526-6443545 Msa0585500:intron 40.0%
AAGTCTTAAAGTGGGAACCT+TGG + chr4_2:6443669-6443688 Msa0585500:intron 40.0%
CTTGTGTAAAAAACAGGGGA+AGG + chr4_2:6442439-6442458 Msa0585500:five_prime_UTR 40.0%
CAATACACCAATTAGTGCAC+CGG + chr4_2:6442469-6442488 Msa0585500:five_prime_UTR 40.0%
AATACACCAATTAGTGCACC+GGG + chr4_2:6442470-6442489 Msa0585500:five_prime_UTR 40.0%
ACACCAAATGAAGAAGAAGG+AGG - chr4_2:6442741-6442760 None:intergenic 40.0%
! TGAAGCACTAACTTGAACAC+CGG + chr4_2:6442945-6442964 Msa0585500:five_prime_UTR 40.0%
TTTGATGTAAGCGCATGTGT+TGG + chr4_2:6443029-6443048 Msa0585500:five_prime_UTR 40.0%
! CAGTGCTACTACATTGACAA+AGG + chr4_2:6443081-6443100 Msa0585500:five_prime_UTR 40.0%
! GCGTATAGCTTTTAGCACAA+TGG - chr4_2:6444537-6444556 None:intergenic 40.0%
GGGGAATGACAGTTATATGA+AGG + chr4_2:6444672-6444691 Msa0585500:intron 40.0%
GCTCCAATGCATGAACAAAT+AGG - chr4_2:6444878-6444897 None:intergenic 40.0%
TTCATGCATTGGAGCAACTA+TGG + chr4_2:6444883-6444902 Msa0585500:intron 40.0%
ATGCTCAAATCAATCGGAGA+AGG + chr4_2:6444939-6444958 Msa0585500:intron 40.0%
TGCTCAAATCAATCGGAGAA+GGG + chr4_2:6444940-6444959 Msa0585500:intron 40.0%
GCTTGAAGGAAATGAGGTTT+AGG + chr4_2:6445034-6445053 Msa0585500:intron 40.0%
GTGCATGTGTTAAAAGGCTA+AGG + chr4_2:6445201-6445220 Msa0585500:intron 40.0%
!!! CATCTGCTTTTTGTTCAGCT+TGG + chr4_2:6445502-6445521 Msa0585500:intron 40.0%
!! TGTTGTGGTTTTTGAAGGTG+TGG + chr4_2:6445587-6445606 Msa0585500:intron 40.0%
ATCAGCTCAGTCAAAACAGT+GGG - chr4_2:6445697-6445716 None:intergenic 40.0%
!!! GTTTTGACTGAGCTGATGAT+TGG + chr4_2:6445700-6445719 Msa0585500:intron 40.0%
!!! GGGACTTTTAGAGTGAAAAG+AGG + chr4_2:6445769-6445788 Msa0585500:five_prime_UTR 40.0%
!! AGTACAAAAGGCACTTCTCT+GGG - chr4_2:6445874-6445893 None:intergenic 40.0%
!! AAGTACAAAAGGCACTTCTC+TGG - chr4_2:6445875-6445894 None:intergenic 40.0%
!!! GAGAAGTGCCTTTTGTACTT+CGG + chr4_2:6445875-6445894 Msa0585500:CDS 40.0%
GTTCTTTGCCGAAGTACAAA+AGG - chr4_2:6445886-6445905 None:intergenic 40.0%
!! GATCAGTGAAAAGCATCTTG+AGG - chr4_2:6445995-6446014 None:intergenic 40.0%
CCCCCAAAGAAGAAAAAGTT+TGG + chr4_2:6446014-6446033 Msa0585500:CDS 40.0%
GGAGGGTTACTTAATCATGA+AGG - chr4_2:6446092-6446111 None:intergenic 40.0%
CATCTCTGTCTTTCTTGATC+AGG + chr4_2:6446170-6446189 Msa0585500:intron 40.0%
CAAATATGCTACCATACCCA+AGG - chr4_2:6446239-6446258 None:intergenic 40.0%
TGCTTCAGCTGTATATTTGG+TGG + chr4_2:6446363-6446382 Msa0585500:intron 40.0%
AGAAATGCTGGTAAGATGCA+TGG + chr4_2:6446474-6446493 Msa0585500:intron 40.0%
GAAATGCTGGTAAGATGCAT+GGG + chr4_2:6446475-6446494 Msa0585500:intron 40.0%
GGTAAGATGCATGGGATAAT+TGG + chr4_2:6446483-6446502 Msa0585500:intron 40.0%
ATTGGACCCCTGAATTGATA+TGG - chr4_2:6446542-6446561 None:intergenic 40.0%
! TCTTTTTCCTAGCTAGACAC+TGG + chr4_2:6446647-6446666 Msa0585500:intron 40.0%
TTTACAACCAGTGTCTAGCT+AGG - chr4_2:6446657-6446676 None:intergenic 40.0%
! TATTTGTTGCTGCATCATGG+TGG + chr4_2:6446697-6446716 Msa0585500:intron 40.0%
! TTGCTGAAACTGTTTCTTGC+TGG + chr4_2:6446921-6446940 Msa0585500:intron 40.0%
AAAGGCAAAATCAACCCCAA+AGG - chr4_2:6446992-6447011 None:intergenic 40.0%
CCACTTCCTATGAAGTGATT+TGG - chr4_2:6447031-6447050 None:intergenic 40.0%
CCAAATCACTTCATAGGAAG+TGG + chr4_2:6447028-6447047 Msa0585500:intron 40.0%
AATCACTTCATAGGAAGTGG+AGG + chr4_2:6447031-6447050 Msa0585500:intron 40.0%
GAAGGAAGAAGAAGAAGCAA+AGG + chr4_2:6447067-6447086 Msa0585500:CDS 40.0%
! AGGTTTATCCTTTTCCTCAG+GGG - chr4_2:6447120-6447139 None:intergenic 40.0%
! CAGGTTTATCCTTTTCCTCA+GGG - chr4_2:6447121-6447140 None:intergenic 40.0%
! TCAGGTTTATCCTTTTCCTC+AGG - chr4_2:6447122-6447141 None:intergenic 40.0%
AGTCTCTCTTTCATCTCTGA+CGG - chr4_2:6447152-6447171 None:intergenic 40.0%
!! ACTTGGTGCAGGCAAATTTA+TGG - chr4_2:6447276-6447295 None:intergenic 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG + chr4_2:6447426-6447445 Msa0585500:CDS 40.0%
!! AAAGGAGGGCTTTGGAAAAA+AGG + chr4_2:6447459-6447478 Msa0585500:CDS 40.0%
!! AAGGAGGGCTTTGGAAAAAA+GGG + chr4_2:6447460-6447479 Msa0585500:CDS 40.0%
GGAAAAAAGGGAAGAGTAAG+TGG + chr4_2:6447472-6447491 Msa0585500:exon 40.0%
GAAGAGCTTCTTAAGATGCT+CGG + chr4_2:6447514-6447533 Msa0585500:three_prime_UTR 40.0%
CTTAAGATGCTCGGATCTTA+CGG + chr4_2:6447523-6447542 Msa0585500:three_prime_UTR 40.0%
ACACAACCAACCCTTTCATA+GGG - chr4_2:6447873-6447892 None:intergenic 40.0%
AACACAACCAACCCTTTCAT+AGG - chr4_2:6447874-6447893 None:intergenic 40.0%
TGCCTCTAATAGAAACTACC+AGG - chr4_2:6447909-6447928 None:intergenic 40.0%
! TTCTTCCCTCTCTCCAATTT+TGG - chr4_2:6447972-6447991 None:intergenic 40.0%
TGTTTGAATAAAGGGCAGCC+CGG - chr4_2:6442491-6442510 None:intergenic 45.0%
TCGCCTCCTTCTTCTTCATT+TGG + chr4_2:6442735-6442754 Msa0585500:five_prime_UTR 45.0%
ACAAGTTTACTGTTGCGCCA+AGG - chr4_2:6443689-6443708 None:intergenic 45.0%
! CTTGTTGTCACGTGACTGAA+AGG + chr4_2:6443704-6443723 Msa0585500:intron 45.0%
TGTTTGAATAAAGGGCAGCC+CGG - chr4_2:6442491-6442510 None:intergenic 45.0%
TCGCCTCCTTCTTCTTCATT+TGG + chr4_2:6442735-6442754 Msa0585500:five_prime_UTR 45.0%
GTAGGCATACTGTTAGGTAC+CGG + chr4_2:6444639-6444658 Msa0585500:intron 45.0%
TAGGCATACTGTTAGGTACC+GGG + chr4_2:6444640-6444659 Msa0585500:intron 45.0%
!! TTAGGTACCGGGTTTGTTAG+AGG + chr4_2:6444651-6444670 Msa0585500:intron 45.0%
!! TAGGTACCGGGTTTGTTAGA+GGG + chr4_2:6444652-6444671 Msa0585500:intron 45.0%
TCATTCCCCTCTAACAAACC+CGG - chr4_2:6444661-6444680 None:intergenic 45.0%
AAGGATTGGGATAGTGAGAG+AGG + chr4_2:6444691-6444710 Msa0585500:intron 45.0%
AGGATTGGGATAGTGAGAGA+GGG + chr4_2:6444692-6444711 Msa0585500:intron 45.0%
TTCTCTGCCCAAACCTTCTA+AGG - chr4_2:6444741-6444760 None:intergenic 45.0%
AACACTGCTCCTTCAGAGAA+AGG - chr4_2:6444767-6444786 None:intergenic 45.0%
AGCAGTGTTGTGGGTAGTTA+GGG + chr4_2:6444778-6444797 Msa0585500:intron 45.0%
AAAGGACGTTGCAATAGGGA+AGG - chr4_2:6444808-6444827 None:intergenic 45.0%
! GTGCCCATGTTTGAAACCTT+TGG + chr4_2:6445350-6445369 Msa0585500:intron 45.0%
ACAGTGGGTCGGTAAATCAT+TGG - chr4_2:6445682-6445701 None:intergenic 45.0%
CATCAGCTCAGTCAAAACAG+TGG - chr4_2:6445698-6445717 None:intergenic 45.0%
ACTGAGCTGATGATTGGTAC+AGG + chr4_2:6445706-6445725 Msa0585500:intron 45.0%
GAAAAGAGGATGTTTGGCAG+CGG + chr4_2:6445783-6445802 Msa0585500:exon 45.0%
AGGTCGTCATCACTGATGAA+AGG + chr4_2:6445934-6445953 Msa0585500:CDS 45.0%
!! AGTGAAAAGCATCTTGAGGG+CGG - chr4_2:6445991-6446010 None:intergenic 45.0%
TATGCTACCATACCCAAGGA+AGG - chr4_2:6446235-6446254 None:intergenic 45.0%
CATAGGAAGTGGAGGAGAAA+AGG + chr4_2:6447039-6447058 Msa0585500:intron 45.0%
ATTGGAACTAAATCCCCCTG+AGG + chr4_2:6447103-6447122 Msa0585500:CDS 45.0%
ACTAAATCCCCCTGAGGAAA+AGG + chr4_2:6447109-6447128 Msa0585500:CDS 45.0%
! GGTTTATCCTTTTCCTCAGG+GGG - chr4_2:6447119-6447138 None:intergenic 45.0%
!! CGAACAAGACAGTGTTGGTA+AGG + chr4_2:6447331-6447350 Msa0585500:CDS 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr4_2:6447430-6447449 Msa0585500:CDS 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr4_2:6447431-6447450 Msa0585500:CDS 45.0%
ACAACCAACCCTTTCATAGG+GGG - chr4_2:6447871-6447890 None:intergenic 45.0%
CACAACCAACCCTTTCATAG+GGG - chr4_2:6447872-6447891 None:intergenic 45.0%
AAGGTAACGAGGTCAAGTCC+TGG + chr4_2:6442407-6442426 Msa0585500:five_prime_UTR 50.0%
GTGTCAATGTCGTGTCTGTC+CGG - chr4_2:6442967-6442986 None:intergenic 50.0%
CACGTGACTGAAAGGTAACG+AGG + chr4_2:6443712-6443731 Msa0585500:intron 50.0%
AAGGTAACGAGGTCAAGTCC+TGG + chr4_2:6442407-6442426 Msa0585500:five_prime_UTR 50.0%
GTGTCAATGTCGTGTCTGTC+CGG - chr4_2:6442967-6442986 None:intergenic 50.0%
GAGGTCATGGCTTGATACTC+TGG + chr4_2:6444583-6444602 Msa0585500:intron 50.0%
!! AGGTACCGGGTTTGTTAGAG+GGG + chr4_2:6444653-6444672 Msa0585500:intron 50.0%
! TCTCTGAAGGAGCAGTGTTG+TGG + chr4_2:6444768-6444787 Msa0585500:intron 50.0%
! CTCTGAAGGAGCAGTGTTGT+GGG + chr4_2:6444769-6444788 Msa0585500:intron 50.0%
GAGCAGTGTTGTGGGTAGTT+AGG + chr4_2:6444777-6444796 Msa0585500:intron 50.0%
TGGCTCTTACGTCATTGCCA+TGG + chr4_2:6445522-6445541 Msa0585500:five_prime_UTR 50.0%
GCTCAGTCAAAACAGTGGGT+CGG - chr4_2:6445693-6445712 None:intergenic 50.0%
! TTTTGCCTGCATGCCTTCCT+TGG + chr4_2:6446219-6446238 Msa0585500:CDS 50.0%
TTTGCCTGCATGCCTTCCTT+GGG + chr4_2:6446220-6446239 Msa0585500:CDS 50.0%
GGAGGAGAAAAGGAAGCAGA+AGG + chr4_2:6447049-6447068 Msa0585500:CDS 50.0%
TCTTTCATCTCTGACGGCTG+GGG - chr4_2:6447146-6447165 None:intergenic 50.0%
CTCTTTCATCTCTGACGGCT+GGG - chr4_2:6447147-6447166 None:intergenic 50.0%
TCTCTTTCATCTCTGACGGC+TGG - chr4_2:6447148-6447167 None:intergenic 50.0%
! CCAACACTGTCTTGTTCGAC+TGG - chr4_2:6447329-6447348 None:intergenic 50.0%
CCAGTCGAACAAGACAGTGT+TGG + chr4_2:6447326-6447345 Msa0585500:CDS 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr4_2:6447429-6447448 Msa0585500:CDS 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + chr4_2:6447436-6447455 Msa0585500:CDS 50.0%
CTGTAGTACAGGGCTCTCAT+TGG + chr4_2:6447583-6447602 Msa0585500:three_prime_UTR 50.0%
CGACAGGTCAGTATCCTGTA+AGG - chr4_2:6447647-6447666 None:intergenic 50.0%
AATCTTCCCCTACGTCGAAG+CGG - chr4_2:6447672-6447691 None:intergenic 50.0%
ATGGCATCCCCCCTATGAAA+GGG + chr4_2:6447860-6447879 Msa0585500:three_prime_UTR 50.0%
CAACCAACCCTTTCATAGGG+GGG - chr4_2:6447870-6447889 None:intergenic 50.0%
TTGGTCGGAGACGGAATGGA+CGG - chr4_2:6442705-6442724 None:intergenic 55.0%
TTGGTCGGAGACGGAATGGA+CGG - chr4_2:6442705-6442724 None:intergenic 55.0%
AGAGGATGTTTGGCAGCGGA+AGG + chr4_2:6445787-6445806 Msa0585500:exon 55.0%
! CATACCCAAGGAAGGCATGC+AGG - chr4_2:6446227-6446246 None:intergenic 55.0%
CTGCATGCCTTCCTTGGGTA+TGG + chr4_2:6446225-6446244 Msa0585500:intron 55.0%
!! CCACTCGTGTTACTTGGTGC+AGG - chr4_2:6447287-6447306 None:intergenic 55.0%
CCTGCACCAAGTAACACGAG+TGG + chr4_2:6447284-6447303 Msa0585500:CDS 55.0%
GCACCAAGTAACACGAGTGG+CGG + chr4_2:6447287-6447306 Msa0585500:CDS 55.0%
! GAACCGCCACTCGTGTTACT+TGG - chr4_2:6447293-6447312 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + chr4_2:6447435-6447454 Msa0585500:CDS 55.0%
GAGTTTGGAGGGGAAGGGAA+AGG + chr4_2:6447441-6447460 Msa0585500:CDS 55.0%
TTTGGAGGGGAAGGGAAAGG+AGG + chr4_2:6447444-6447463 Msa0585500:CDS 55.0%
TTGGAGGGGAAGGGAAAGGA+GGG + chr4_2:6447445-6447464 Msa0585500:CDS 55.0%
ATCTTCCCCTACGTCGAAGC+GGG - chr4_2:6447671-6447690 None:intergenic 55.0%
GATGGCATCCCCCCTATGAA+AGG + chr4_2:6447859-6447878 Msa0585500:three_prime_UTR 55.0%
CATCCCCCCTATGAAAGGGT+TGG + chr4_2:6447864-6447883 Msa0585500:three_prime_UTR 55.0%
CAGCTTGGTCGGAGACGGAA+TGG - chr4_2:6442709-6442728 None:intergenic 60.0%
AGCAGCAGCTTGGTCGGAGA+CGG - chr4_2:6442714-6442733 None:intergenic 60.0%
CAGCTTGGTCGGAGACGGAA+TGG - chr4_2:6442709-6442728 None:intergenic 60.0%
AGCAGCAGCTTGGTCGGAGA+CGG - chr4_2:6442714-6442733 None:intergenic 60.0%
GGATGTTTGGCAGCGGAAGG+AGG + chr4_2:6445790-6445809 Msa0585500:exon 60.0%
TGTTTGGCAGCGGAAGGAGG+TGG + chr4_2:6445793-6445812 Msa0585500:CDS 60.0%
ATCTCTGACGGCTGGGGATC+AGG - chr4_2:6447140-6447159 None:intergenic 60.0%
GGGAAGGGAAAGGAGGGCTT+TGG + chr4_2:6447451-6447470 Msa0585500:CDS 60.0%
TGTCGTCCCGCTTCGACGTA+GGG + chr4_2:6447662-6447681 Msa0585500:three_prime_UTR 60.0%
GGGCAGCCCGGTGCACTAAT+TGG - chr4_2:6442479-6442498 None:intergenic 65.0%
! GAATGGACGGCGCCGGAGAT+GGG - chr4_2:6442692-6442711 None:intergenic 65.0%
GGCGACAGCAGCAGCTTGGT+CGG - chr4_2:6442720-6442739 None:intergenic 65.0%
AGGAGGCGACAGCAGCAGCT+TGG - chr4_2:6442724-6442743 None:intergenic 65.0%
GGGCAGCCCGGTGCACTAAT+TGG - chr4_2:6442479-6442498 None:intergenic 65.0%
! GAATGGACGGCGCCGGAGAT+GGG - chr4_2:6442692-6442711 None:intergenic 65.0%
GGCGACAGCAGCAGCTTGGT+CGG - chr4_2:6442720-6442739 None:intergenic 65.0%
AGGAGGCGACAGCAGCAGCT+TGG - chr4_2:6442724-6442743 None:intergenic 65.0%
CTACGTCGAAGCGGGACGAC+AGG - chr4_2:6447663-6447682 None:intergenic 65.0%
CTGTCGTCCCGCTTCGACGT+AGG + chr4_2:6447661-6447680 Msa0585500:three_prime_UTR 65.0%
GTCGTCCCGCTTCGACGTAG+GGG + chr4_2:6447663-6447682 Msa0585500:three_prime_UTR 65.0%
! GGAATGGACGGCGCCGGAGA+TGG - chr4_2:6442693-6442712 None:intergenic 70.0%
GGAGACGGAATGGACGGCGC+CGG - chr4_2:6442699-6442718 None:intergenic 70.0%
! GGAATGGACGGCGCCGGAGA+TGG - chr4_2:6442693-6442712 None:intergenic 70.0%
GGAGACGGAATGGACGGCGC+CGG - chr4_2:6442699-6442718 None:intergenic 70.0%
TCGCGCCGCCGTCCCATCTC+CGG + chr4_2:6442677-6442696 Msa0585500:five_prime_UTR 75.0%
! GGACGGCGCCGGAGATGGGA+CGG - chr4_2:6442688-6442707 None:intergenic 75.0%
TCGCGCCGCCGTCCCATCTC+CGG + chr4_2:6442677-6442696 Msa0585500:five_prime_UTR 75.0%
! GGACGGCGCCGGAGATGGGA+CGG - chr4_2:6442688-6442707 None:intergenic 75.0%
!! CGGCGCCGGAGATGGGACGG+CGG - chr4_2:6442685-6442704 None:intergenic 80.0%
!! CGGCGCCGGAGATGGGACGG+CGG - chr4_2:6442685-6442704 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 6442407 6448010 6442407 ID=Msa0585500;Name=Msa0585500
chr4_2 mRNA 6442407 6448010 6442407 ID=Msa0585500-mRNA-1;Parent=Msa0585500;Name=Msa0585500-mRNA-1;_AED=0.15;_eAED=0.15;_QI=936|1|1|1|0.5|0.42|7|520|264
chr4_2 exon 6442407 6443102 6442407 ID=Msa0585500-mRNA-1:exon:1562;Parent=Msa0585500-mRNA-1
chr4_2 exon 6443981 6444072 6443981 ID=Msa0585500-mRNA-1:exon:1563;Parent=Msa0585500-mRNA-1
chr4_2 exon 6445520 6445603 6445520 ID=Msa0585500-mRNA-1:exon:1564;Parent=Msa0585500-mRNA-1
chr4_2 exon 6445728 6446036 6445728 ID=Msa0585500-mRNA-1:exon:1565;Parent=Msa0585500-mRNA-1
chr4_2 exon 6446192 6446241 6446192 ID=Msa0585500-mRNA-1:exon:1566;Parent=Msa0585500-mRNA-1
chr4_2 exon 6446371 6446423 6446371 ID=Msa0585500-mRNA-1:exon:1567;Parent=Msa0585500-mRNA-1
chr4_2 exon 6447044 6448010 6447044 ID=Msa0585500-mRNA-1:exon:1568;Parent=Msa0585500-mRNA-1
chr4_2 five_prime_UTR 6442407 6443102 6442407 ID=Msa0585500-mRNA-1:five_prime_utr;Parent=Msa0585500-mRNA-1
chr4_2 five_prime_UTR 6443981 6444072 6443981 ID=Msa0585500-mRNA-1:five_prime_utr;Parent=Msa0585500-mRNA-1
chr4_2 five_prime_UTR 6445520 6445603 6445520 ID=Msa0585500-mRNA-1:five_prime_utr;Parent=Msa0585500-mRNA-1
chr4_2 five_prime_UTR 6445728 6445791 6445728 ID=Msa0585500-mRNA-1:five_prime_utr;Parent=Msa0585500-mRNA-1
chr4_2 CDS 6445792 6446036 6445792 ID=Msa0585500-mRNA-1:cds;Parent=Msa0585500-mRNA-1
chr4_2 CDS 6446192 6446241 6446192 ID=Msa0585500-mRNA-1:cds;Parent=Msa0585500-mRNA-1
chr4_2 CDS 6446371 6446423 6446371 ID=Msa0585500-mRNA-1:cds;Parent=Msa0585500-mRNA-1
chr4_2 CDS 6447044 6447490 6447044 ID=Msa0585500-mRNA-1:cds;Parent=Msa0585500-mRNA-1
chr4_2 three_prime_UTR 6447491 6448010 6447491 ID=Msa0585500-mRNA-1:three_prime_utr;Parent=Msa0585500-mRNA-1
Gene Sequence

>Msa0585500

ATGTTTGGCAGCGGAAGGAGGTGGTTGCGCTTTGTGCAATTCAAGCTTTATCCAACAACATCATTATGCAACAAATCTGCCCAGAGAAGTGCCTTTTGTACTTCGGCAAAGAACAACAACAACAACAACAACAACAATAACAAGGTCGTCATCACTGATGAAAGGTATCAGCAGCTCGAAAATCTCAACATGATGACCGCCCTCAAGATGCTTTTCACTGATCCCCCAAAGAAGAAAAAGTTTGGGTTTGATTTCCATCTTGTGCAATTTTTTTTTGCCTGCATGCCTTCCTTGGCTGTATATTTGGTGGCTCAGTACGCTCGTTATGAAATCAGAAGAATGGAAGCGGAAGTGGAGGAGAAAAGGAAGCAGAAGGAAGAAGAAGAAGCAAAGGAGAAAGAAAAAGAATTGGAACTAAATCCCCCTGAGGAAAAGGATAAACCTGATCCCCAGCCGTCAGAGATGAAAGAGAGACTTGAGAAACTTGAAGAGACTGTAAAGGAGATTGCTGTTGTAAAAAAGAAACAATCAACCAGTAACATAGACACAAATCAGGTAACTGGTGATGAGAAAAAAGCCATAAATTTGCCTGCACCAAGTAACACGAGTGGCGGTTCAGTAACTATTAAACCAGTCGAACAAGACAGTGTTGGTAAGGATAATTCTCTCAAGTCAAGGACAGAATTAGATGAAGAAAGTAAGGGTTTGGTGGCAACTCCAAGTTCTTTTCTTAGGCTTTGTTTGCGAGTTTGGAGGGGAAGGGAAAGGAGGGCTTTGGAAAAAAGGGAAGAGTAA
Protein sequence

>Msa0585500

MFGSGRRWLRFVQFKLYPTTSLCNKSAQRSAFCTSAKNNNNNNNNNNKVVITDERYQQLENLNMMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYEIRRMEAEVEEKRKQKEEEEAKEKEKELELNPPEEKDKPDPQPSEMKERLEKLEETVKEIAVVKKKQSTSNIDTNQVTGDEKKAINLPAPSNTSGGSVTIKPVEQDSVGKDNSLKSRTELDEESKGLVATPSSFLRLCLRVWRGRERRALEKREE*