AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404250 MtrunA17_Chr4g0070801 84.014 294 22 1 1 269 1 294 2.54e-176 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404250 AT2G19385.1 43.771 297 117 8 1 269 1 275 6.95e-57 184
Msa1404250 AT2G19380.1 31.220 205 88 7 1 164 1 193 8.20e-18 83.2
Msa1404250 AT2G19380.1 44.578 83 44 1 53 135 207 287 1.44e-13 70.9
Msa1404250 AT2G19380.1 50.794 63 31 0 58 120 142 204 5.14e-12 66.2

Find 83 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCAGTTGACGTGGAAAA+TGG 0.191316 tig0023052:+43914 Msa1404250:CDS
GGAAAATGGGGAAGTATTTC+AGG 0.217234 tig0023052:+43928 Msa1404250:CDS
AAACTTCATTCACCGGTTTC+AGG 0.267736 tig0023052:-43823 None:intergenic
AACTGGCGTTAACCTGATTT+CGG 0.270078 tig0023052:-41162 None:intergenic
CAAGGCTGCCAAGCTATTCT+AGG 0.278594 tig0023052:-41119 None:intergenic
CAACAGGAATGTTCAATCTT+TGG 0.280454 tig0023052:-44498 None:intergenic
ACGTTCAATTATTATCTTGT+AGG 0.290046 tig0023052:+44663 Msa1404250:three_prime_UTR
CAACCTTAAAACTAAGACTA+TGG 0.299318 tig0023052:+41231 Msa1404250:exon
ACTGGCGTTAACCTGATTTC+GGG 0.331028 tig0023052:-41161 None:intergenic
TTCTTCTCCCCGTGGTAAAT+TGG 0.333367 tig0023052:+41068 None:intergenic
CGGATAATTTATTGTTGATT+GGG 0.340775 tig0023052:+44614 Msa1404250:three_prime_UTR
ACGGATAATTTATTGTTGAT+TGG 0.350472 tig0023052:+44613 Msa1404250:three_prime_UTR
CGGAAGTGATTGGGCAACTT+AGG 0.376657 tig0023052:-41295 None:intergenic
CATCAGTTGACGTGGAAAAT+GGG 0.380294 tig0023052:+43915 Msa1404250:CDS
CTTGTTCTCAACTGCAAAGT+TGG 0.386423 tig0023052:-44459 None:intergenic
ATTGGTAGATTAAACGATAA+AGG 0.397953 tig0023052:+41086 Msa1404250:five_prime_UTR
TAGATTCCTGCAGTGCTTTG+AGG 0.398509 tig0023052:-44273 None:intergenic
GAGGAAACATGAAGCATTAG+AGG 0.399707 tig0023052:+43862 Msa1404250:CDS
TTCTTCATCTTCAATCCATC+AGG 0.401465 tig0023052:-44235 None:intergenic
AATTCAACATACAAATTTCA+AGG 0.401997 tig0023052:-44002 None:intergenic
GGAGCACGATCGGAAGTGAT+TGG 0.404214 tig0023052:-41305 None:intergenic
CTTTGTTTGCCATCTTTGAC+AGG 0.405588 tig0023052:-42719 None:intergenic
GAAGGCTTAAACCCGAAATC+AGG 0.418945 tig0023052:+41150 Msa1404250:five_prime_UTR
TCAGAAGACTCGTGCAACTT+TGG 0.435496 tig0023052:-43791 None:intergenic
GCTTCGAAGCATGGAACGCT+CGG 0.436244 tig0023052:-43670 None:intergenic
TCCACTGCATCCTTTGCATC+AGG 0.440074 tig0023052:-43722 None:intergenic
TTTGCCATCTTTGACAGGCT+TGG 0.441946 tig0023052:-42714 None:intergenic
TTAAAACTAAGACTATGGTT+TGG 0.442584 tig0023052:+41236 Msa1404250:exon
TGAATAAGAAGGAACCTTGT+TGG 0.444790 tig0023052:-41329 None:intergenic
CAGGCGCAAAATTATCTGTC+TGG 0.451138 tig0023052:-43703 None:intergenic
GGAGACGGGTTCTAATGATA+TGG 0.458688 tig0023052:+43742 Msa1404250:CDS
CAAGAGAGAGGAAAATAAAG+TGG 0.462140 tig0023052:+43960 Msa1404250:CDS
CAGGAAAAGTATGGTCCAAA+AGG 0.462353 tig0023052:+42662 Msa1404250:intron
GGCAGCCTTGACTCTTGTGA+AGG 0.465298 tig0023052:+41132 Msa1404250:five_prime_UTR
TGAACAAAATAACCTGAAAC+CGG 0.469254 tig0023052:+43811 Msa1404250:CDS
TACTGGTGGCAGCATCCTGA+TGG 0.473972 tig0023052:+44220 Msa1404250:intron
GAGCACGATCGGAAGTGATT+GGG 0.477804 tig0023052:-41304 None:intergenic
CCTTGTTGGCGGAGCACGAT+CGG 0.488710 tig0023052:-41315 None:intergenic
CTCAACTGCAAAGTTGGAGC+TGG 0.492457 tig0023052:-44453 None:intergenic
GAACAAGTATGTGCGATTAG+TGG 0.494270 tig0023052:+44475 Msa1404250:CDS
GCAAAGGATGCAGTGGAGAC+GGG 0.502647 tig0023052:+43728 Msa1404250:CDS
TGCAAAGGATGCAGTGGAGA+CGG 0.510937 tig0023052:+43727 Msa1404250:CDS
CTTCGAAGCATGGAACGCTC+GGG 0.518211 tig0023052:-43669 None:intergenic
GGTCATATGACATCTCCAAC+AGG 0.518542 tig0023052:-44514 None:intergenic
TCGGAAGAAACTTCATTCAC+CGG 0.522070 tig0023052:-43830 None:intergenic
CTAGTGGTTGCTTCGAAGCA+TGG 0.522690 tig0023052:-43679 None:intergenic
TGGTTTCAATGTGAAGATTG+TGG 0.532835 tig0023052:+41256 Msa1404250:CDS
GAGCGAGGCGATTGAGCAGA+AGG 0.538864 tig0023052:+44321 Msa1404250:CDS
ACACTGTCTAGAACTAGCAT+TGG 0.542344 tig0023052:-44747 None:intergenic
GCTGCCAAGCCTGTCAAAGA+TGG 0.543446 tig0023052:+42710 Msa1404250:CDS
AAGGCTGCCAAGCTATTCTA+GGG 0.547202 tig0023052:-41118 None:intergenic
AGATTAAACGATAAAGGTAA+AGG 0.549147 tig0023052:+41092 Msa1404250:five_prime_UTR
AAATTATCTGTCTGGACTAG+TGG 0.555342 tig0023052:-43695 None:intergenic
GCTAGTCGTTGATATTAATG+TGG 0.556605 tig0023052:+42742 Msa1404250:CDS
CTAGTCGTTGATATTAATGT+GGG 0.562155 tig0023052:+42743 Msa1404250:CDS
TTAATCTACCAATTTACCAC+GGG 0.565698 tig0023052:-41076 None:intergenic
AGTTGTCCTCAAAGCACTGC+AGG 0.573521 tig0023052:+44267 Msa1404250:CDS
AACGTCCTCCGTGGTTCTGT+AGG 0.574054 tig0023052:+42774 Msa1404250:CDS
GAAAATGGGGAAGTATTTCA+GGG 0.576073 tig0023052:+43929 Msa1404250:CDS
AAGGAAACCCTAGAATAGCT+TGG 0.579841 tig0023052:+41111 Msa1404250:five_prime_UTR
ATGCTGAAGGAAAGAAACAC+GGG 0.581891 tig0023052:+43639 Msa1404250:CDS
CAAAGATTGAACATTCCTGT+TGG 0.583351 tig0023052:+44499 Msa1404250:exon
GCACTTCTTCTACATGCTGA+AGG 0.586895 tig0023052:+43626 Msa1404250:CDS
TTAAGCCTTCACAAGAGTCA+AGG 0.595017 tig0023052:-41137 None:intergenic
ATCAGTTGACGTGGAAAATG+GGG 0.599482 tig0023052:+43916 Msa1404250:CDS
AAGTATGGTCCAAAAGGCCA+AGG 0.606114 tig0023052:+42668 Msa1404250:CDS
ATAAGAAGGAACCTTGTTGG+CGG 0.607122 tig0023052:-41326 None:intergenic
AGGAAACATGAAGCATTAGA+GGG 0.613312 tig0023052:+43863 Msa1404250:CDS
GGAAGTATTTCAGGGCGAGA+AGG 0.613916 tig0023052:+43937 Msa1404250:CDS
TTTAATCTACCAATTTACCA+CGG 0.617936 tig0023052:-41077 None:intergenic
AGGGCGAGAAGGCAAGAGAG+AGG 0.620409 tig0023052:+43948 Msa1404250:CDS
CATGCTGAAGGAAAGAAACA+CGG 0.639025 tig0023052:+43638 Msa1404250:CDS
CTGTCAAAGATGGCAAACAA+AGG 0.639970 tig0023052:+42720 Msa1404250:CDS
TTTCATGTTTCTTCTCCCCG+TGG 0.645515 tig0023052:+41060 None:intergenic
TAAATGAGAATACAAACCAA+CGG 0.648163 tig0023052:-44716 None:intergenic
GCCTGATGCAAAGGATGCAG+TGG 0.663160 tig0023052:+43721 Msa1404250:CDS
GAATGACACATCAGTTGACG+TGG 0.669822 tig0023052:+43907 Msa1404250:CDS
AAATGAAAATGAATTGAGCG+AGG 0.672838 tig0023052:+44306 Msa1404250:CDS
CAGTGAAGCAGAACGAACGA+TGG 0.690490 tig0023052:-41196 None:intergenic
AGTATATACCTACAGAACCA+CGG 0.706642 tig0023052:-42782 None:intergenic
TAATCTACCAATTTACCACG+GGG 0.769258 tig0023052:-41075 None:intergenic
TGCTGAAGGAAAGAAACACG+GGG 0.771538 tig0023052:+43640 Msa1404250:CDS
ATATACCTACAGAACCACGG+AGG 0.855057 tig0023052:-42779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATCATTTATATTATTTTA+AGG + tig0023052:42402-42421 Msa1404250:intron 10.0%
!!! TTTTATGTAAATGTAAATAT+AGG + tig0023052:43044-43063 Msa1404250:intron 10.0%
!!! TTTTTATTATAAAATAGTCT+CGG - tig0023052:43486-43505 None:intergenic 10.0%
!! TTTACTAAAATTAATACTAA+AGG - tig0023052:44389-44408 None:intergenic 10.0%
!!! ATAATTAATGGACAAAAATA+AGG - tig0023052:41523-41542 None:intergenic 15.0%
!! TGAATAATAAACTATCAATT+TGG + tig0023052:42238-42257 Msa1404250:intron 15.0%
!!! TGATAGATTGATAATAATTT+AGG - tig0023052:42327-42346 None:intergenic 15.0%
!! AATATAAAAATTCATTATGC+TGG - tig0023052:42530-42549 None:intergenic 15.0%
!!! CAATTTGTTTCAAAAAATAA+AGG - tig0023052:43173-43192 None:intergenic 15.0%
!!! CTTTATTTTTTGAAACAAAT+TGG + tig0023052:43171-43190 Msa1404250:intron 15.0%
!! AATACATTTCTTAGTTTAAT+TGG + tig0023052:43342-43361 Msa1404250:intron 15.0%
!! TTTATCTATATATGTTATAG+TGG + tig0023052:44054-44073 Msa1404250:intron 15.0%
!! TTATCTATATATGTTATAGT+GGG + tig0023052:44055-44074 Msa1404250:intron 15.0%
!! TTGTCCATTAATTATAGATT+AGG + tig0023052:41528-41547 Msa1404250:intron 20.0%
!!! TTTTCTGTGTAAATAAACTA+TGG + tig0023052:41923-41942 Msa1404250:intron 20.0%
!! TTTCTGTGTAAATAAACTAT+GGG + tig0023052:41924-41943 Msa1404250:intron 20.0%
!!! TATCATTTTCTCTCATATTT+TGG + tig0023052:42270-42289 Msa1404250:intron 20.0%
!!! AATTTCATTTTCATAGTTCA+GGG - tig0023052:42297-42316 None:intergenic 20.0%
!!! TAATTTCATTTTCATAGTTC+AGG - tig0023052:42298-42317 None:intergenic 20.0%
!! TTGTTATATTTCAAAAGTTC+AGG + tig0023052:42429-42448 Msa1404250:intron 20.0%
!! TGTTATATTTCAAAAGTTCA+GGG + tig0023052:42430-42449 Msa1404250:intron 20.0%
!! ATTCAACCATAAGTTAAAAA+AGG - tig0023052:43090-43109 None:intergenic 20.0%
!! CACAATCGAAAATTATAAAA+AGG - tig0023052:43420-43439 None:intergenic 20.0%
!! AAAAACAAATATTGGTAAAG+AGG - tig0023052:43512-43531 None:intergenic 20.0%
!! TCTAGAAGAAAAACAAATAT+TGG - tig0023052:43520-43539 None:intergenic 20.0%
!! TAGATATTATTTCACTCTTA+TGG + tig0023052:43536-43555 Msa1404250:intron 20.0%
!! AATTCAACATACAAATTTCA+AGG - tig0023052:44005-44024 None:intergenic 20.0%
!!! GAAATTTGTATGTTGAATTT+TGG + tig0023052:44006-44025 Msa1404250:intron 20.0%
!!! AACAAAAGAGAATATTTTGA+CGG + tig0023052:44688-44707 Msa1404250:three_prime_UTR 20.0%
! TTTAATCTACCAATTTACCA+CGG - tig0023052:41080-41099 None:intergenic 25.0%
! ATTGGTAGATTAAACGATAA+AGG + tig0023052:41086-41105 Msa1404250:five_prime_UTR 25.0%
! AGATTAAACGATAAAGGTAA+AGG + tig0023052:41092-41111 Msa1404250:five_prime_UTR 25.0%
!!! AAACCATAGTCTTAGTTTTA+AGG - tig0023052:41237-41256 None:intergenic 25.0%
! TTAAAACTAAGACTATGGTT+TGG + tig0023052:41236-41255 Msa1404250:exon 25.0%
! TGAACATGAATTGAATAAGA+AGG - tig0023052:41343-41362 None:intergenic 25.0%
! AACAACGGAAAAATTAATCA+TGG - tig0023052:41395-41414 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - tig0023052:41555-41574 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - tig0023052:41556-41575 None:intergenic 25.0%
! TCAAATTAGTCATTCCAAAA+AGG + tig0023052:41700-41719 Msa1404250:intron 25.0%
! TAGAGAGCTAAATTCAAAAT+AGG - tig0023052:41747-41766 None:intergenic 25.0%
!!! TCTCTAAAATGAGAAAATCA+AGG + tig0023052:41761-41780 Msa1404250:intron 25.0%
! TTCTGTGTAAATAAACTATG+GGG + tig0023052:41925-41944 Msa1404250:intron 25.0%
!!! TTTACTCAATGCTATTTCTT+TGG + tig0023052:42024-42043 Msa1404250:intron 25.0%
!! TTCAAAGTTTCCTTTAACTT+AGG + tig0023052:42073-42092 Msa1404250:intron 25.0%
! AAATGATAGTCCTAAGTTAA+AGG - tig0023052:42086-42105 None:intergenic 25.0%
! TGAGAGAAAATGATAGTTTA+GGG - tig0023052:42265-42284 None:intergenic 25.0%
! ATGAGAGAAAATGATAGTTT+AGG - tig0023052:42266-42285 None:intergenic 25.0%
! TAGAAGAGAGTGATAATTTA+GGG - tig0023052:42357-42376 None:intergenic 25.0%
! ATAGAAGAGAGTGATAATTT+AGG - tig0023052:42358-42377 None:intergenic 25.0%
!!! TCTTCTATTTTGAAAGTAGT+TGG + tig0023052:42370-42389 Msa1404250:intron 25.0%
!!! CTTCTATTTTGAAAGTAGTT+GGG + tig0023052:42371-42390 Msa1404250:intron 25.0%
!!! TTCTATTTTGAAAGTAGTTG+GGG + tig0023052:42372-42391 Msa1404250:intron 25.0%
! AGAGAGAAACATAATTATCA+TGG + tig0023052:42906-42925 Msa1404250:intron 25.0%
!! TTTTACATTAAACGTAAGCA+TGG - tig0023052:43123-43142 None:intergenic 25.0%
!!! TTGAAACAAATTGGTTTTTG+AGG + tig0023052:43180-43199 Msa1404250:intron 25.0%
! GAATGATATTAGTGTTAATC+AGG + tig0023052:43236-43255 Msa1404250:intron 25.0%
! GAAAAAAGTAAATAAAAGCG+CGG - tig0023052:43398-43417 None:intergenic 25.0%
! ATTATTTCACTCTTATGGTT+TGG + tig0023052:43541-43560 Msa1404250:intron 25.0%
!! ATGTTTCCTCTTTTTCTTTT+CGG - tig0023052:43852-43871 None:intergenic 25.0%
! TTACAGCAGGAAAATTATAT+GGG - tig0023052:44186-44205 None:intergenic 25.0%
! ATTACAGCAGGAAAATTATA+TGG - tig0023052:44187-44206 None:intergenic 25.0%
!!! TAATCTGCTTATTGTTTTAC+TGG + tig0023052:44203-44222 Msa1404250:intron 25.0%
!!! TCCTAGAAATTTTTTGTGAA+CGG + tig0023052:44594-44613 Msa1404250:three_prime_UTR 25.0%
! ACGGATAATTTATTGTTGAT+TGG + tig0023052:44613-44632 Msa1404250:three_prime_UTR 25.0%
!! CGGATAATTTATTGTTGATT+GGG + tig0023052:44614-44633 Msa1404250:three_prime_UTR 25.0%
! ACGTTCAATTATTATCTTGT+AGG + tig0023052:44663-44682 Msa1404250:three_prime_UTR 25.0%
! TAAATGAGAATACAAACCAA+CGG - tig0023052:44719-44738 None:intergenic 25.0%
TTAATCTACCAATTTACCAC+GGG - tig0023052:41079-41098 None:intergenic 30.0%
CAACCTTAAAACTAAGACTA+TGG + tig0023052:41231-41250 Msa1404250:exon 30.0%
AAGCTACATAGCATAAACAA+CGG - tig0023052:41410-41429 None:intergenic 30.0%
TGGACAAAAATAAGGCAAAA+AGG - tig0023052:41515-41534 None:intergenic 30.0%
GGGTCCTAATCTATAATTAA+TGG - tig0023052:41535-41554 None:intergenic 30.0%
CTTATGAAAACAGCTTATTG+TGG - tig0023052:41604-41623 None:intergenic 30.0%
AAGCTATATGAACATGTCAT+AGG + tig0023052:41621-41640 Msa1404250:intron 30.0%
TAAGTACTTGTAAGACTGTT+GGG - tig0023052:41665-41684 None:intergenic 30.0%
ATAAGTACTTGTAAGACTGT+TGG - tig0023052:41666-41685 None:intergenic 30.0%
ACTAATTTGAGCTTACTTAC+CGG - tig0023052:41690-41709 None:intergenic 30.0%
AAATTGAGGATGGATATTAG+AGG - tig0023052:41832-41851 None:intergenic 30.0%
ATTGACTAACAAATTGAGGA+TGG - tig0023052:41842-41861 None:intergenic 30.0%
!! ATCCTCAATTTGTTAGTCAA+TGG + tig0023052:41841-41860 Msa1404250:intron 30.0%
! AACCATTGACTAACAAATTG+AGG - tig0023052:41846-41865 None:intergenic 30.0%
!! GTGGTTTGAGTTTTGTAAAA+CGG + tig0023052:41977-41996 Msa1404250:intron 30.0%
!! TGGTTTGAGTTTTGTAAAAC+GGG + tig0023052:41978-41997 Msa1404250:intron 30.0%
!! TCTATTTTGAAAGTAGTTGG+GGG + tig0023052:42373-42392 Msa1404250:intron 30.0%
!! TTCGATTTTCAGGAAAAGTA+TGG + tig0023052:42653-42672 Msa1404250:intron 30.0%
CTAGTCGTTGATATTAATGT+GGG + tig0023052:42743-42762 Msa1404250:CDS 30.0%
! AGTCCTCCTATTATTTCTTA+CGG + tig0023052:42981-43000 Msa1404250:intron 30.0%
CATGAACCGTAAGAAATAAT+AGG - tig0023052:42990-43009 None:intergenic 30.0%
TAGGATGTTGAAAAATTAGC+TGG + tig0023052:43063-43082 Msa1404250:intron 30.0%
AGGATGTTGAAAAATTAGCT+GGG + tig0023052:43064-43083 Msa1404250:intron 30.0%
CTTATGGTTGAATTATGTAG+TGG + tig0023052:43097-43116 Msa1404250:intron 30.0%
TGAACAAAATAACCTGAAAC+CGG + tig0023052:43811-43830 Msa1404250:CDS 30.0%
TTTCTTCCGAAAAGAAAAAG+AGG + tig0023052:43843-43862 Msa1404250:CDS 30.0%
GATAAAGCAGAAAACAAGAA+AGG - tig0023052:44040-44059 None:intergenic 30.0%
TTATCTGTTTATTCTGAGCA+TGG + tig0023052:44081-44100 Msa1404250:intron 30.0%
TATAGTGATATAGAGATAGC+TGG + tig0023052:44104-44123 Msa1404250:intron 30.0%
TACAGCAGGAAAATTATATG+GGG - tig0023052:44185-44204 None:intergenic 30.0%
AAATGAAAATGAATTGAGCG+AGG + tig0023052:44306-44325 Msa1404250:CDS 30.0%
AGACAAAAATTAACGACTCT+TGG - tig0023052:44538-44557 None:intergenic 30.0%
!! TTTCTAGGAGATACTTTTGA+GGG - tig0023052:44583-44602 None:intergenic 30.0%
!! ATTTCTAGGAGATACTTTTG+AGG - tig0023052:44584-44603 None:intergenic 30.0%
TCCGTTCACAAAAAATTTCT+AGG - tig0023052:44598-44617 None:intergenic 30.0%
TAATCTACCAATTTACCACG+GGG - tig0023052:41078-41097 None:intergenic 35.0%
TGGTTTCAATGTGAAGATTG+TGG + tig0023052:41256-41275 Msa1404250:CDS 35.0%
TGAATAAGAAGGAACCTTGT+TGG - tig0023052:41332-41351 None:intergenic 35.0%
TTATAGATTAGGACCCTGTT+TGG + tig0023052:41539-41558 Msa1404250:intron 35.0%
TGGTAAGTGTTTGTGCTATA+AGG - tig0023052:41584-41603 None:intergenic 35.0%
AAGTACTTGTAAGACTGTTG+GGG - tig0023052:41664-41683 None:intergenic 35.0%
AGTCTTACAAGTACTTATGC+CGG + tig0023052:41668-41687 Msa1404250:intron 35.0%
ACTTGAGAAGCTGAATTAAG+GGG - tig0023052:41959-41978 None:intergenic 35.0%
CACTTGAGAAGCTGAATTAA+GGG - tig0023052:41960-41979 None:intergenic 35.0%
!!! TTCTTTGGTTTTCCTCAATG+TGG + tig0023052:42039-42058 Msa1404250:intron 35.0%
TCCTCGTATCATTACAATCA+TGG + tig0023052:42108-42127 Msa1404250:intron 35.0%
CCTCGTATCATTACAATCAT+GGG + tig0023052:42109-42128 Msa1404250:intron 35.0%
CTCGTATCATTACAATCATG+GGG + tig0023052:42110-42129 Msa1404250:intron 35.0%
ACTCACCTTCTAACTACTTT+AGG + tig0023052:42145-42164 Msa1404250:intron 35.0%
CTCACCTTCTAACTACTTTA+GGG + tig0023052:42146-42165 Msa1404250:intron 35.0%
AATGCCCTAAAGTAGTTAGA+AGG - tig0023052:42153-42172 None:intergenic 35.0%
CTAATACAGTGCAGTCAATT+TGG - tig0023052:42486-42505 None:intergenic 35.0%
! CTCATTTTGCTTCGATTTTC+AGG + tig0023052:42643-42662 Msa1404250:intron 35.0%
!! AAAGTTTTTCCTTGGCCTTT+TGG - tig0023052:42680-42699 None:intergenic 35.0%
! CAGCATTCAAAGTTTTTCCT+TGG - tig0023052:42688-42707 None:intergenic 35.0%
GCTAGTCGTTGATATTAATG+TGG + tig0023052:42742-42761 Msa1404250:CDS 35.0%
AGTATATACCTACAGAACCA+CGG - tig0023052:42785-42804 None:intergenic 35.0%
GAACCGTAAGAAATAATAGG+AGG - tig0023052:42987-43006 None:intergenic 35.0%
TACGGTTCATGCAATCATAA+AGG + tig0023052:42999-43018 Msa1404250:intron 35.0%
ACGGTTCATGCAATCATAAA+GGG + tig0023052:43000-43019 Msa1404250:intron 35.0%
AATCAGGTAAGAGTCTAAAC+AGG + tig0023052:43252-43271 Msa1404250:intron 35.0%
ACACTACAATATGCCGTTAT+TGG - tig0023052:43463-43482 None:intergenic 35.0%
! AAATTATCTGTCTGGACTAG+TGG - tig0023052:43698-43717 None:intergenic 35.0%
! AGGAAACATGAAGCATTAGA+GGG + tig0023052:43863-43882 Msa1404250:CDS 35.0%
!! GAAAATGGGGAAGTATTTCA+GGG + tig0023052:43929-43948 Msa1404250:CDS 35.0%
CAAGAGAGAGGAAAATAAAG+TGG + tig0023052:43960-43979 Msa1404250:CDS 35.0%
AACAATAAGCAGATTACAGC+AGG - tig0023052:44199-44218 None:intergenic 35.0%
!! TCTGCTTATTGTTTTACTGG+TGG + tig0023052:44206-44225 Msa1404250:intron 35.0%
TTCTTCATCTTCAATCCATC+AGG - tig0023052:44238-44257 None:intergenic 35.0%
ACAGAAACACAACTCATAGA+TGG - tig0023052:44358-44377 None:intergenic 35.0%
CAACAGGAATGTTCAATCTT+TGG - tig0023052:44501-44520 None:intergenic 35.0%
CAAAGATTGAACATTCCTGT+TGG + tig0023052:44499-44518 Msa1404250:exon 35.0%
AAGGAAACCCTAGAATAGCT+TGG + tig0023052:41111-41130 Msa1404250:five_prime_UTR 40.0%
TTAAGCCTTCACAAGAGTCA+AGG - tig0023052:41140-41159 None:intergenic 40.0%
AACTGGCGTTAACCTGATTT+CGG - tig0023052:41165-41184 None:intergenic 40.0%
!!! TGGGCAACTTAGGTTTTTTG+AGG - tig0023052:41288-41307 None:intergenic 40.0%
ATAAGAAGGAACCTTGTTGG+CGG - tig0023052:41329-41348 None:intergenic 40.0%
ATTGACTGTGGACAGATGTT+TGG + tig0023052:41436-41455 Msa1404250:intron 40.0%
CTTCTGTAATACACTGTGTG+TGG - tig0023052:41480-41499 None:intergenic 40.0%
CACACAGTGTATTACAGAAG+CGG + tig0023052:41480-41499 Msa1404250:intron 40.0%
GGTTCAAGTGTAACAACCTA+GGG - tig0023052:41726-41745 None:intergenic 40.0%
AGGTTCAAGTGTAACAACCT+AGG - tig0023052:41727-41746 None:intergenic 40.0%
AGCGATTTACTCACTTCTAG+AGG + tig0023052:41885-41904 Msa1404250:intron 40.0%
TTGAGAAGCTGAATTAAGGG+GGG - tig0023052:41957-41976 None:intergenic 40.0%
CTTGAGAAGCTGAATTAAGG+GGG - tig0023052:41958-41977 None:intergenic 40.0%
CCACTTGAGAAGCTGAATTA+AGG - tig0023052:41961-41980 None:intergenic 40.0%
CCTTAATTCAGCTTCTCAAG+TGG + tig0023052:41958-41977 Msa1404250:intron 40.0%
CCCATGATTGTAATGATACG+AGG - tig0023052:42112-42131 None:intergenic 40.0%
GGCATTCTAGTATCTACTGA+AGG + tig0023052:42167-42186 Msa1404250:intron 40.0%
CAAAAGTTCAGGGACCAAAT+CGG + tig0023052:42440-42459 Msa1404250:intron 40.0%
AACTATGACTCTCTCCGATT+TGG - tig0023052:42457-42476 None:intergenic 40.0%
TCGGAGAGAGTCATAGTTTA+AGG + tig0023052:42459-42478 Msa1404250:intron 40.0%
TTGACTGCACTGTATTAGTC+TGG + tig0023052:42488-42507 Msa1404250:intron 40.0%
! CAGGAAAAGTATGGTCCAAA+AGG + tig0023052:42662-42681 Msa1404250:intron 40.0%
! CTTTGTTTGCCATCTTTGAC+AGG - tig0023052:42722-42741 None:intergenic 40.0%
CTGTCAAAGATGGCAAACAA+AGG + tig0023052:42720-42739 Msa1404250:CDS 40.0%
CATGGTCTACATATCCTGTT+CGG + tig0023052:42924-42943 Msa1404250:intron 40.0%
TCTACATATCCTGTTCGGAT+GGG + tig0023052:42929-42948 Msa1404250:intron 40.0%
CGGTTCATGCAATCATAAAG+GGG + tig0023052:43001-43020 Msa1404250:intron 40.0%
GGTTCATGCAATCATAAAGG+GGG + tig0023052:43002-43021 Msa1404250:intron 40.0%
!!! GCTGGGCCTTTTTTAACTTA+TGG + tig0023052:43081-43100 Msa1404250:intron 40.0%
TGAGTGTCAACTGCCAATAA+CGG + tig0023052:43447-43466 Msa1404250:intron 40.0%
CATGCTGAAGGAAAGAAACA+CGG + tig0023052:43638-43657 Msa1404250:CDS 40.0%
ATGCTGAAGGAAAGAAACAC+GGG + tig0023052:43639-43658 Msa1404250:CDS 40.0%
! TAATTTTGCGCCTGATGCAA+AGG + tig0023052:43712-43731 Msa1404250:CDS 40.0%
!! AAACTTCATTCACCGGTTTC+AGG - tig0023052:43826-43845 None:intergenic 40.0%
TCGGAAGAAACTTCATTCAC+CGG - tig0023052:43833-43852 None:intergenic 40.0%
! GAGGAAACATGAAGCATTAG+AGG + tig0023052:43862-43881 Msa1404250:CDS 40.0%
ACATCAGTTGACGTGGAAAA+TGG + tig0023052:43914-43933 Msa1404250:CDS 40.0%
CATCAGTTGACGTGGAAAAT+GGG + tig0023052:43915-43934 Msa1404250:CDS 40.0%
ATCAGTTGACGTGGAAAATG+GGG + tig0023052:43916-43935 Msa1404250:CDS 40.0%
!! GGAAAATGGGGAAGTATTTC+AGG + tig0023052:43928-43947 Msa1404250:CDS 40.0%
! GAGATAGCTGGTGACTTTTA+AGG + tig0023052:44116-44135 Msa1404250:intron 40.0%
CACAACTCATAGATGGACAA+TGG - tig0023052:44351-44370 None:intergenic 40.0%
CTTGTTCTCAACTGCAAAGT+TGG - tig0023052:44462-44481 None:intergenic 40.0%
GAACAAGTATGTGCGATTAG+TGG + tig0023052:44475-44494 Msa1404250:CDS 40.0%
!!! TATTTTGACGGAGATTCCGT+TGG + tig0023052:44700-44719 Msa1404250:three_prime_UTR 40.0%
! ACACTGTCTAGAACTAGCAT+TGG - tig0023052:44750-44769 None:intergenic 40.0%
AAGGCTGCCAAGCTATTCTA+GGG - tig0023052:41121-41140 None:intergenic 45.0%
GAAGGCTTAAACCCGAAATC+AGG + tig0023052:41150-41169 Msa1404250:five_prime_UTR 45.0%
ACTGGCGTTAACCTGATTTC+GGG - tig0023052:41164-41183 None:intergenic 45.0%
!! TAGCTTTCGTGCATTGACTG+TGG + tig0023052:41424-41443 Msa1404250:intron 45.0%
AGTCATTCCAAAAAGGCCCT+AGG + tig0023052:41707-41726 Msa1404250:intron 45.0%
! GTAACAACCTAGGGCCTTTT+TGG - tig0023052:41717-41736 None:intergenic 45.0%
! TACTCACTTCTAGAGGAGTC+TGG + tig0023052:41892-41911 Msa1404250:intron 45.0%
AAACGGGTACCTATCTGTTG+TGG + tig0023052:41994-42013 Msa1404250:intron 45.0%
AACGGGTACCTATCTGTTGT+GGG + tig0023052:41995-42014 Msa1404250:intron 45.0%
AACTCCATCCCACAACAGAT+AGG - tig0023052:42006-42025 None:intergenic 45.0%
! TGGTTTTCCTCAATGTGGCT+AGG + tig0023052:42044-42063 Msa1404250:intron 45.0%
ACAAGATCCTAGCCACATTG+AGG - tig0023052:42054-42073 None:intergenic 45.0%
AAGTATGGTCCAAAAGGCCA+AGG + tig0023052:42668-42687 Msa1404250:CDS 45.0%
TTTGCCATCTTTGACAGGCT+TGG - tig0023052:42717-42736 None:intergenic 45.0%
ATATACCTACAGAACCACGG+AGG - tig0023052:42782-42801 None:intergenic 45.0%
GTCTACATATCCTGTTCGGA+TGG + tig0023052:42928-42947 Msa1404250:intron 45.0%
TATCCTGTTCGGATGGGAAT+TGG + tig0023052:42935-42954 Msa1404250:intron 45.0%
ATCCTGTTCGGATGGGAATT+GGG + tig0023052:42936-42955 Msa1404250:intron 45.0%
! ATTAGCCTGCAAGTCTCTTG+TGG + tig0023052:43277-43296 Msa1404250:intron 45.0%
TTGATCCACAAGAGACTTGC+AGG - tig0023052:43285-43304 None:intergenic 45.0%
GCAAGTCTCTTGTGGATCAA+AGG + tig0023052:43285-43304 Msa1404250:intron 45.0%
GCACTTCTTCTACATGCTGA+AGG + tig0023052:43626-43645 Msa1404250:CDS 45.0%
TGCTGAAGGAAAGAAACACG+GGG + tig0023052:43640-43659 Msa1404250:CDS 45.0%
CAGGCGCAAAATTATCTGTC+TGG - tig0023052:43706-43725 None:intergenic 45.0%
! GGAGACGGGTTCTAATGATA+TGG + tig0023052:43742-43761 Msa1404250:CDS 45.0%
TCAGAAGACTCGTGCAACTT+TGG - tig0023052:43794-43813 None:intergenic 45.0%
GAATGACACATCAGTTGACG+TGG + tig0023052:43907-43926 Msa1404250:CDS 45.0%
TAGATTCCTGCAGTGCTTTG+AGG - tig0023052:44276-44295 None:intergenic 45.0%
GGTCATATGACATCTCCAAC+AGG - tig0023052:44517-44536 None:intergenic 45.0%
CAAGGCTGCCAAGCTATTCT+AGG - tig0023052:41122-41141 None:intergenic 50.0%
!! CGATGGCTCTGTTTTGCAAC+TGG - tig0023052:41182-41201 None:intergenic 50.0%
CAGTGAAGCAGAACGAACGA+TGG - tig0023052:41199-41218 None:intergenic 50.0%
CGGAAGTGATTGGGCAACTT+AGG - tig0023052:41298-41317 None:intergenic 50.0%
GAGCACGATCGGAAGTGATT+GGG - tig0023052:41307-41326 None:intergenic 50.0%
GGTACCTATCTGTTGTGGGA+TGG + tig0023052:41999-42018 Msa1404250:intron 50.0%
CATGCAATCATAAAGGGGGC+AGG + tig0023052:43006-43025 Msa1404250:intron 50.0%
CTAGTGGTTGCTTCGAAGCA+TGG - tig0023052:43682-43701 None:intergenic 50.0%
TCCACTGCATCCTTTGCATC+AGG - tig0023052:43725-43744 None:intergenic 50.0%
TGCAAAGGATGCAGTGGAGA+CGG + tig0023052:43727-43746 Msa1404250:CDS 50.0%
!! GGAAGTATTTCAGGGCGAGA+AGG + tig0023052:43937-43956 Msa1404250:CDS 50.0%
!! AGTTGTCCTCAAAGCACTGC+AGG + tig0023052:44267-44286 Msa1404250:CDS 50.0%
CTCAACTGCAAAGTTGGAGC+TGG - tig0023052:44456-44475 None:intergenic 50.0%
GGCAGCCTTGACTCTTGTGA+AGG + tig0023052:41132-41151 Msa1404250:five_prime_UTR 55.0%
GGAGCACGATCGGAAGTGAT+TGG - tig0023052:41308-41327 None:intergenic 55.0%
GCTGCCAAGCCTGTCAAAGA+TGG + tig0023052:42710-42729 Msa1404250:CDS 55.0%
! AACGTCCTCCGTGGTTCTGT+AGG + tig0023052:42774-42793 Msa1404250:CDS 55.0%
AGCCCAATTCCCATCCGAAC+AGG - tig0023052:42941-42960 None:intergenic 55.0%
CTTCGAAGCATGGAACGCTC+GGG - tig0023052:43672-43691 None:intergenic 55.0%
GCTTCGAAGCATGGAACGCT+CGG - tig0023052:43673-43692 None:intergenic 55.0%
GCCTGATGCAAAGGATGCAG+TGG + tig0023052:43721-43740 Msa1404250:CDS 55.0%
GCAAAGGATGCAGTGGAGAC+GGG + tig0023052:43728-43747 Msa1404250:CDS 55.0%
TACTGGTGGCAGCATCCTGA+TGG + tig0023052:44220-44239 Msa1404250:intron 55.0%
CCTTGTTGGCGGAGCACGAT+CGG - tig0023052:41318-41337 None:intergenic 60.0%
GCTTAGCTGAACGTCCTCCG+TGG + tig0023052:42765-42784 Msa1404250:CDS 60.0%
AGGGCGAGAAGGCAAGAGAG+AGG + tig0023052:43948-43967 Msa1404250:CDS 60.0%
GAGCGAGGCGATTGAGCAGA+AGG + tig0023052:44321-44340 Msa1404250:CDS 60.0%
CCGATCGTGCTCCGCCAACA+AGG + tig0023052:41315-41334 Msa1404250:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0023052 gene 41071 44783 41071 ID=Msa1404250;Name=Msa1404250
tig0023052 mRNA 41071 44783 41071 ID=Msa1404250-mRNA-1;Parent=Msa1404250;Name=Msa1404250-mRNA-1;_AED=0.08;_eAED=0.08;_QI=179|0.75|1|1|1|1|5|275|269
tig0023052 exon 41071 41336 41071 ID=Msa1404250-mRNA-1:exon:19682;Parent=Msa1404250-mRNA-1
tig0023052 exon 42665 42795 42665 ID=Msa1404250-mRNA-1:exon:19683;Parent=Msa1404250-mRNA-1
tig0023052 exon 43595 44012 43595 ID=Msa1404250-mRNA-1:exon:19684;Parent=Msa1404250-mRNA-1
tig0023052 exon 44232 44342 44232 ID=Msa1404250-mRNA-1:exon:19685;Parent=Msa1404250-mRNA-1
tig0023052 exon 44446 44783 44446 ID=Msa1404250-mRNA-1:exon:19686;Parent=Msa1404250-mRNA-1
tig0023052 five_prime_UTR 41071 41249 41071 ID=Msa1404250-mRNA-1:five_prime_utr;Parent=Msa1404250-mRNA-1
tig0023052 CDS 41250 41336 41250 ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1
tig0023052 CDS 42665 42795 42665 ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1
tig0023052 CDS 43595 44012 43595 ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1
tig0023052 CDS 44232 44342 44232 ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1
tig0023052 CDS 44446 44508 44446 ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1
tig0023052 three_prime_UTR 44509 44783 44509 ID=Msa1404250-mRNA-1:three_prime_utr;Parent=Msa1404250-mRNA-1
Gene Sequence

>Msa1404250

ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAACCTAAGTTGCCCAATCACTTCCGATCGTGCTCCGCCAACAAGGAAAAGTATGGTCCAAAAGGCCAAGGAAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGCAAACAAAGGCTAGTCGTTGATATTAATGTGGGCTTAGCTGAACGTCCTCCGTGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCACTTCTTCTACATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCGTTCCATGCTTCGAAGCAACCACTAGTCCAGACAGATAATTTTGCGCCTGATGCAAAGGATGCAGTGGAGACGGGTTCTAATGATATGGCAAAAGATGACAAAATTTCAGAGCAGCCAAAGTTGCACGAGTCTTCTGAACAAAATAACCTGAAACCGGTGAATGAAGTTTCTTCCGAAAAGAAAAAGAGGAAACATGAAGCATTAGAGGGTGACGTTATTAAAAAAAACAAGAATGACACATCAGTTGACGTGGAAAATGGGGAAGTATTTCAGGGCGAGAAGGCAAGAGAGAGGAAAATAAAGTGGAAGAAGTTTATCAAAGCAGCCTTGAAATTTCATCCTGATGGATTGAAGATGAAGAAATTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTAGCATTGTAGTAAATGAAAATGAATTGAGCGAGGCGATTGAGCAGAAGATAAACTCCAGCTCCAACTTTGCAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA

Protein sequence

>Msa1404250

MVWFQCEDCGDNLKKPKLPNHFRSCSANKEKYGPKGQGKTLNAAAAKPVKDGKQRLVVDINVGLAERPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASKQPLVQTDNFAPDAKDAVETGSNDMAKDDKISEQPKLHESSEQNNLKPVNEVSSEKKKRKHEALEGDVIKKNKNDTSVDVENGEVFQGEKARERKIKWKKFIKAALKFHPDGLKMKKLRKVVLKALQESSIVVNENELSEAIEQKINSSSNFAVENKYVRLVAKD*