Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404250 | XP_013458440.1 | 84.014 | 294 | 22 | 1 | 1 | 269 | 1 | 294 | 2.76e-172 | 487 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404250 | sp|O64571|UBA1C_ARATH | 31.220 | 205 | 88 | 7 | 1 | 164 | 1 | 193 | 8.06e-17 | 83.2 |
Msa1404250 | sp|O64571|UBA1C_ARATH | 44.578 | 83 | 44 | 1 | 53 | 135 | 207 | 287 | 1.42e-12 | 70.9 |
Msa1404250 | sp|O64571|UBA1C_ARATH | 50.794 | 63 | 31 | 0 | 58 | 120 | 142 | 204 | 5.05e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404250 | A0A072UT04 | 84.014 | 294 | 22 | 1 | 1 | 269 | 1 | 294 | 1.32e-172 | 487 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1266190 | Msa1404250 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
Msa1220900 | Msa1404250 | 0.803746 | 3.008565e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404250 | MtrunA17_Chr4g0070801 | 84.014 | 294 | 22 | 1 | 1 | 269 | 1 | 294 | 2.54e-176 | 487 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404250 | AT2G19385.1 | 43.771 | 297 | 117 | 8 | 1 | 269 | 1 | 275 | 6.95e-57 | 184 |
Msa1404250 | AT2G19380.1 | 31.220 | 205 | 88 | 7 | 1 | 164 | 1 | 193 | 8.20e-18 | 83.2 |
Msa1404250 | AT2G19380.1 | 44.578 | 83 | 44 | 1 | 53 | 135 | 207 | 287 | 1.44e-13 | 70.9 |
Msa1404250 | AT2G19380.1 | 50.794 | 63 | 31 | 0 | 58 | 120 | 142 | 204 | 5.14e-12 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATCAGTTGACGTGGAAAA+TGG | 0.191316 | tig0023052:+43914 | Msa1404250:CDS |
GGAAAATGGGGAAGTATTTC+AGG | 0.217234 | tig0023052:+43928 | Msa1404250:CDS |
AAACTTCATTCACCGGTTTC+AGG | 0.267736 | tig0023052:-43823 | None:intergenic |
AACTGGCGTTAACCTGATTT+CGG | 0.270078 | tig0023052:-41162 | None:intergenic |
CAAGGCTGCCAAGCTATTCT+AGG | 0.278594 | tig0023052:-41119 | None:intergenic |
CAACAGGAATGTTCAATCTT+TGG | 0.280454 | tig0023052:-44498 | None:intergenic |
ACGTTCAATTATTATCTTGT+AGG | 0.290046 | tig0023052:+44663 | Msa1404250:three_prime_UTR |
CAACCTTAAAACTAAGACTA+TGG | 0.299318 | tig0023052:+41231 | Msa1404250:exon |
ACTGGCGTTAACCTGATTTC+GGG | 0.331028 | tig0023052:-41161 | None:intergenic |
TTCTTCTCCCCGTGGTAAAT+TGG | 0.333367 | tig0023052:+41068 | None:intergenic |
CGGATAATTTATTGTTGATT+GGG | 0.340775 | tig0023052:+44614 | Msa1404250:three_prime_UTR |
ACGGATAATTTATTGTTGAT+TGG | 0.350472 | tig0023052:+44613 | Msa1404250:three_prime_UTR |
CGGAAGTGATTGGGCAACTT+AGG | 0.376657 | tig0023052:-41295 | None:intergenic |
CATCAGTTGACGTGGAAAAT+GGG | 0.380294 | tig0023052:+43915 | Msa1404250:CDS |
CTTGTTCTCAACTGCAAAGT+TGG | 0.386423 | tig0023052:-44459 | None:intergenic |
ATTGGTAGATTAAACGATAA+AGG | 0.397953 | tig0023052:+41086 | Msa1404250:five_prime_UTR |
TAGATTCCTGCAGTGCTTTG+AGG | 0.398509 | tig0023052:-44273 | None:intergenic |
GAGGAAACATGAAGCATTAG+AGG | 0.399707 | tig0023052:+43862 | Msa1404250:CDS |
TTCTTCATCTTCAATCCATC+AGG | 0.401465 | tig0023052:-44235 | None:intergenic |
AATTCAACATACAAATTTCA+AGG | 0.401997 | tig0023052:-44002 | None:intergenic |
GGAGCACGATCGGAAGTGAT+TGG | 0.404214 | tig0023052:-41305 | None:intergenic |
CTTTGTTTGCCATCTTTGAC+AGG | 0.405588 | tig0023052:-42719 | None:intergenic |
GAAGGCTTAAACCCGAAATC+AGG | 0.418945 | tig0023052:+41150 | Msa1404250:five_prime_UTR |
TCAGAAGACTCGTGCAACTT+TGG | 0.435496 | tig0023052:-43791 | None:intergenic |
GCTTCGAAGCATGGAACGCT+CGG | 0.436244 | tig0023052:-43670 | None:intergenic |
TCCACTGCATCCTTTGCATC+AGG | 0.440074 | tig0023052:-43722 | None:intergenic |
TTTGCCATCTTTGACAGGCT+TGG | 0.441946 | tig0023052:-42714 | None:intergenic |
TTAAAACTAAGACTATGGTT+TGG | 0.442584 | tig0023052:+41236 | Msa1404250:exon |
TGAATAAGAAGGAACCTTGT+TGG | 0.444790 | tig0023052:-41329 | None:intergenic |
CAGGCGCAAAATTATCTGTC+TGG | 0.451138 | tig0023052:-43703 | None:intergenic |
GGAGACGGGTTCTAATGATA+TGG | 0.458688 | tig0023052:+43742 | Msa1404250:CDS |
CAAGAGAGAGGAAAATAAAG+TGG | 0.462140 | tig0023052:+43960 | Msa1404250:CDS |
CAGGAAAAGTATGGTCCAAA+AGG | 0.462353 | tig0023052:+42662 | Msa1404250:intron |
GGCAGCCTTGACTCTTGTGA+AGG | 0.465298 | tig0023052:+41132 | Msa1404250:five_prime_UTR |
TGAACAAAATAACCTGAAAC+CGG | 0.469254 | tig0023052:+43811 | Msa1404250:CDS |
TACTGGTGGCAGCATCCTGA+TGG | 0.473972 | tig0023052:+44220 | Msa1404250:intron |
GAGCACGATCGGAAGTGATT+GGG | 0.477804 | tig0023052:-41304 | None:intergenic |
CCTTGTTGGCGGAGCACGAT+CGG | 0.488710 | tig0023052:-41315 | None:intergenic |
CTCAACTGCAAAGTTGGAGC+TGG | 0.492457 | tig0023052:-44453 | None:intergenic |
GAACAAGTATGTGCGATTAG+TGG | 0.494270 | tig0023052:+44475 | Msa1404250:CDS |
GCAAAGGATGCAGTGGAGAC+GGG | 0.502647 | tig0023052:+43728 | Msa1404250:CDS |
TGCAAAGGATGCAGTGGAGA+CGG | 0.510937 | tig0023052:+43727 | Msa1404250:CDS |
CTTCGAAGCATGGAACGCTC+GGG | 0.518211 | tig0023052:-43669 | None:intergenic |
GGTCATATGACATCTCCAAC+AGG | 0.518542 | tig0023052:-44514 | None:intergenic |
TCGGAAGAAACTTCATTCAC+CGG | 0.522070 | tig0023052:-43830 | None:intergenic |
CTAGTGGTTGCTTCGAAGCA+TGG | 0.522690 | tig0023052:-43679 | None:intergenic |
TGGTTTCAATGTGAAGATTG+TGG | 0.532835 | tig0023052:+41256 | Msa1404250:CDS |
GAGCGAGGCGATTGAGCAGA+AGG | 0.538864 | tig0023052:+44321 | Msa1404250:CDS |
ACACTGTCTAGAACTAGCAT+TGG | 0.542344 | tig0023052:-44747 | None:intergenic |
GCTGCCAAGCCTGTCAAAGA+TGG | 0.543446 | tig0023052:+42710 | Msa1404250:CDS |
AAGGCTGCCAAGCTATTCTA+GGG | 0.547202 | tig0023052:-41118 | None:intergenic |
AGATTAAACGATAAAGGTAA+AGG | 0.549147 | tig0023052:+41092 | Msa1404250:five_prime_UTR |
AAATTATCTGTCTGGACTAG+TGG | 0.555342 | tig0023052:-43695 | None:intergenic |
GCTAGTCGTTGATATTAATG+TGG | 0.556605 | tig0023052:+42742 | Msa1404250:CDS |
CTAGTCGTTGATATTAATGT+GGG | 0.562155 | tig0023052:+42743 | Msa1404250:CDS |
TTAATCTACCAATTTACCAC+GGG | 0.565698 | tig0023052:-41076 | None:intergenic |
AGTTGTCCTCAAAGCACTGC+AGG | 0.573521 | tig0023052:+44267 | Msa1404250:CDS |
AACGTCCTCCGTGGTTCTGT+AGG | 0.574054 | tig0023052:+42774 | Msa1404250:CDS |
GAAAATGGGGAAGTATTTCA+GGG | 0.576073 | tig0023052:+43929 | Msa1404250:CDS |
AAGGAAACCCTAGAATAGCT+TGG | 0.579841 | tig0023052:+41111 | Msa1404250:five_prime_UTR |
ATGCTGAAGGAAAGAAACAC+GGG | 0.581891 | tig0023052:+43639 | Msa1404250:CDS |
CAAAGATTGAACATTCCTGT+TGG | 0.583351 | tig0023052:+44499 | Msa1404250:exon |
GCACTTCTTCTACATGCTGA+AGG | 0.586895 | tig0023052:+43626 | Msa1404250:CDS |
TTAAGCCTTCACAAGAGTCA+AGG | 0.595017 | tig0023052:-41137 | None:intergenic |
ATCAGTTGACGTGGAAAATG+GGG | 0.599482 | tig0023052:+43916 | Msa1404250:CDS |
AAGTATGGTCCAAAAGGCCA+AGG | 0.606114 | tig0023052:+42668 | Msa1404250:CDS |
ATAAGAAGGAACCTTGTTGG+CGG | 0.607122 | tig0023052:-41326 | None:intergenic |
AGGAAACATGAAGCATTAGA+GGG | 0.613312 | tig0023052:+43863 | Msa1404250:CDS |
GGAAGTATTTCAGGGCGAGA+AGG | 0.613916 | tig0023052:+43937 | Msa1404250:CDS |
TTTAATCTACCAATTTACCA+CGG | 0.617936 | tig0023052:-41077 | None:intergenic |
AGGGCGAGAAGGCAAGAGAG+AGG | 0.620409 | tig0023052:+43948 | Msa1404250:CDS |
CATGCTGAAGGAAAGAAACA+CGG | 0.639025 | tig0023052:+43638 | Msa1404250:CDS |
CTGTCAAAGATGGCAAACAA+AGG | 0.639970 | tig0023052:+42720 | Msa1404250:CDS |
TTTCATGTTTCTTCTCCCCG+TGG | 0.645515 | tig0023052:+41060 | None:intergenic |
TAAATGAGAATACAAACCAA+CGG | 0.648163 | tig0023052:-44716 | None:intergenic |
GCCTGATGCAAAGGATGCAG+TGG | 0.663160 | tig0023052:+43721 | Msa1404250:CDS |
GAATGACACATCAGTTGACG+TGG | 0.669822 | tig0023052:+43907 | Msa1404250:CDS |
AAATGAAAATGAATTGAGCG+AGG | 0.672838 | tig0023052:+44306 | Msa1404250:CDS |
CAGTGAAGCAGAACGAACGA+TGG | 0.690490 | tig0023052:-41196 | None:intergenic |
AGTATATACCTACAGAACCA+CGG | 0.706642 | tig0023052:-42782 | None:intergenic |
TAATCTACCAATTTACCACG+GGG | 0.769258 | tig0023052:-41075 | None:intergenic |
TGCTGAAGGAAAGAAACACG+GGG | 0.771538 | tig0023052:+43640 | Msa1404250:CDS |
ATATACCTACAGAACCACGG+AGG | 0.855057 | tig0023052:-42779 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATCATTTATATTATTTTA+AGG | + | tig0023052:42402-42421 | Msa1404250:intron | 10.0% |
!!! | TTTTATGTAAATGTAAATAT+AGG | + | tig0023052:43044-43063 | Msa1404250:intron | 10.0% |
!!! | TTTTTATTATAAAATAGTCT+CGG | - | tig0023052:43486-43505 | None:intergenic | 10.0% |
!! | TTTACTAAAATTAATACTAA+AGG | - | tig0023052:44389-44408 | None:intergenic | 10.0% |
!!! | ATAATTAATGGACAAAAATA+AGG | - | tig0023052:41523-41542 | None:intergenic | 15.0% |
!! | TGAATAATAAACTATCAATT+TGG | + | tig0023052:42238-42257 | Msa1404250:intron | 15.0% |
!!! | TGATAGATTGATAATAATTT+AGG | - | tig0023052:42327-42346 | None:intergenic | 15.0% |
!! | AATATAAAAATTCATTATGC+TGG | - | tig0023052:42530-42549 | None:intergenic | 15.0% |
!!! | CAATTTGTTTCAAAAAATAA+AGG | - | tig0023052:43173-43192 | None:intergenic | 15.0% |
!!! | CTTTATTTTTTGAAACAAAT+TGG | + | tig0023052:43171-43190 | Msa1404250:intron | 15.0% |
!! | AATACATTTCTTAGTTTAAT+TGG | + | tig0023052:43342-43361 | Msa1404250:intron | 15.0% |
!! | TTTATCTATATATGTTATAG+TGG | + | tig0023052:44054-44073 | Msa1404250:intron | 15.0% |
!! | TTATCTATATATGTTATAGT+GGG | + | tig0023052:44055-44074 | Msa1404250:intron | 15.0% |
!! | TTGTCCATTAATTATAGATT+AGG | + | tig0023052:41528-41547 | Msa1404250:intron | 20.0% |
!!! | TTTTCTGTGTAAATAAACTA+TGG | + | tig0023052:41923-41942 | Msa1404250:intron | 20.0% |
!! | TTTCTGTGTAAATAAACTAT+GGG | + | tig0023052:41924-41943 | Msa1404250:intron | 20.0% |
!!! | TATCATTTTCTCTCATATTT+TGG | + | tig0023052:42270-42289 | Msa1404250:intron | 20.0% |
!!! | AATTTCATTTTCATAGTTCA+GGG | - | tig0023052:42297-42316 | None:intergenic | 20.0% |
!!! | TAATTTCATTTTCATAGTTC+AGG | - | tig0023052:42298-42317 | None:intergenic | 20.0% |
!! | TTGTTATATTTCAAAAGTTC+AGG | + | tig0023052:42429-42448 | Msa1404250:intron | 20.0% |
!! | TGTTATATTTCAAAAGTTCA+GGG | + | tig0023052:42430-42449 | Msa1404250:intron | 20.0% |
!! | ATTCAACCATAAGTTAAAAA+AGG | - | tig0023052:43090-43109 | None:intergenic | 20.0% |
!! | CACAATCGAAAATTATAAAA+AGG | - | tig0023052:43420-43439 | None:intergenic | 20.0% |
!! | AAAAACAAATATTGGTAAAG+AGG | - | tig0023052:43512-43531 | None:intergenic | 20.0% |
!! | TCTAGAAGAAAAACAAATAT+TGG | - | tig0023052:43520-43539 | None:intergenic | 20.0% |
!! | TAGATATTATTTCACTCTTA+TGG | + | tig0023052:43536-43555 | Msa1404250:intron | 20.0% |
!! | AATTCAACATACAAATTTCA+AGG | - | tig0023052:44005-44024 | None:intergenic | 20.0% |
!!! | GAAATTTGTATGTTGAATTT+TGG | + | tig0023052:44006-44025 | Msa1404250:intron | 20.0% |
!!! | AACAAAAGAGAATATTTTGA+CGG | + | tig0023052:44688-44707 | Msa1404250:three_prime_UTR | 20.0% |
! | TTTAATCTACCAATTTACCA+CGG | - | tig0023052:41080-41099 | None:intergenic | 25.0% |
! | ATTGGTAGATTAAACGATAA+AGG | + | tig0023052:41086-41105 | Msa1404250:five_prime_UTR | 25.0% |
! | AGATTAAACGATAAAGGTAA+AGG | + | tig0023052:41092-41111 | Msa1404250:five_prime_UTR | 25.0% |
!!! | AAACCATAGTCTTAGTTTTA+AGG | - | tig0023052:41237-41256 | None:intergenic | 25.0% |
! | TTAAAACTAAGACTATGGTT+TGG | + | tig0023052:41236-41255 | Msa1404250:exon | 25.0% |
! | TGAACATGAATTGAATAAGA+AGG | - | tig0023052:41343-41362 | None:intergenic | 25.0% |
! | AACAACGGAAAAATTAATCA+TGG | - | tig0023052:41395-41414 | None:intergenic | 25.0% |
!! | TTAAGTTGTTTATCCAAACA+GGG | - | tig0023052:41555-41574 | None:intergenic | 25.0% |
!! | ATTAAGTTGTTTATCCAAAC+AGG | - | tig0023052:41556-41575 | None:intergenic | 25.0% |
! | TCAAATTAGTCATTCCAAAA+AGG | + | tig0023052:41700-41719 | Msa1404250:intron | 25.0% |
! | TAGAGAGCTAAATTCAAAAT+AGG | - | tig0023052:41747-41766 | None:intergenic | 25.0% |
!!! | TCTCTAAAATGAGAAAATCA+AGG | + | tig0023052:41761-41780 | Msa1404250:intron | 25.0% |
! | TTCTGTGTAAATAAACTATG+GGG | + | tig0023052:41925-41944 | Msa1404250:intron | 25.0% |
!!! | TTTACTCAATGCTATTTCTT+TGG | + | tig0023052:42024-42043 | Msa1404250:intron | 25.0% |
!! | TTCAAAGTTTCCTTTAACTT+AGG | + | tig0023052:42073-42092 | Msa1404250:intron | 25.0% |
! | AAATGATAGTCCTAAGTTAA+AGG | - | tig0023052:42086-42105 | None:intergenic | 25.0% |
! | TGAGAGAAAATGATAGTTTA+GGG | - | tig0023052:42265-42284 | None:intergenic | 25.0% |
! | ATGAGAGAAAATGATAGTTT+AGG | - | tig0023052:42266-42285 | None:intergenic | 25.0% |
! | TAGAAGAGAGTGATAATTTA+GGG | - | tig0023052:42357-42376 | None:intergenic | 25.0% |
! | ATAGAAGAGAGTGATAATTT+AGG | - | tig0023052:42358-42377 | None:intergenic | 25.0% |
!!! | TCTTCTATTTTGAAAGTAGT+TGG | + | tig0023052:42370-42389 | Msa1404250:intron | 25.0% |
!!! | CTTCTATTTTGAAAGTAGTT+GGG | + | tig0023052:42371-42390 | Msa1404250:intron | 25.0% |
!!! | TTCTATTTTGAAAGTAGTTG+GGG | + | tig0023052:42372-42391 | Msa1404250:intron | 25.0% |
! | AGAGAGAAACATAATTATCA+TGG | + | tig0023052:42906-42925 | Msa1404250:intron | 25.0% |
!! | TTTTACATTAAACGTAAGCA+TGG | - | tig0023052:43123-43142 | None:intergenic | 25.0% |
!!! | TTGAAACAAATTGGTTTTTG+AGG | + | tig0023052:43180-43199 | Msa1404250:intron | 25.0% |
! | GAATGATATTAGTGTTAATC+AGG | + | tig0023052:43236-43255 | Msa1404250:intron | 25.0% |
! | GAAAAAAGTAAATAAAAGCG+CGG | - | tig0023052:43398-43417 | None:intergenic | 25.0% |
! | ATTATTTCACTCTTATGGTT+TGG | + | tig0023052:43541-43560 | Msa1404250:intron | 25.0% |
!! | ATGTTTCCTCTTTTTCTTTT+CGG | - | tig0023052:43852-43871 | None:intergenic | 25.0% |
! | TTACAGCAGGAAAATTATAT+GGG | - | tig0023052:44186-44205 | None:intergenic | 25.0% |
! | ATTACAGCAGGAAAATTATA+TGG | - | tig0023052:44187-44206 | None:intergenic | 25.0% |
!!! | TAATCTGCTTATTGTTTTAC+TGG | + | tig0023052:44203-44222 | Msa1404250:intron | 25.0% |
!!! | TCCTAGAAATTTTTTGTGAA+CGG | + | tig0023052:44594-44613 | Msa1404250:three_prime_UTR | 25.0% |
! | ACGGATAATTTATTGTTGAT+TGG | + | tig0023052:44613-44632 | Msa1404250:three_prime_UTR | 25.0% |
!! | CGGATAATTTATTGTTGATT+GGG | + | tig0023052:44614-44633 | Msa1404250:three_prime_UTR | 25.0% |
! | ACGTTCAATTATTATCTTGT+AGG | + | tig0023052:44663-44682 | Msa1404250:three_prime_UTR | 25.0% |
! | TAAATGAGAATACAAACCAA+CGG | - | tig0023052:44719-44738 | None:intergenic | 25.0% |
TTAATCTACCAATTTACCAC+GGG | - | tig0023052:41079-41098 | None:intergenic | 30.0% | |
CAACCTTAAAACTAAGACTA+TGG | + | tig0023052:41231-41250 | Msa1404250:exon | 30.0% | |
AAGCTACATAGCATAAACAA+CGG | - | tig0023052:41410-41429 | None:intergenic | 30.0% | |
TGGACAAAAATAAGGCAAAA+AGG | - | tig0023052:41515-41534 | None:intergenic | 30.0% | |
GGGTCCTAATCTATAATTAA+TGG | - | tig0023052:41535-41554 | None:intergenic | 30.0% | |
CTTATGAAAACAGCTTATTG+TGG | - | tig0023052:41604-41623 | None:intergenic | 30.0% | |
AAGCTATATGAACATGTCAT+AGG | + | tig0023052:41621-41640 | Msa1404250:intron | 30.0% | |
TAAGTACTTGTAAGACTGTT+GGG | - | tig0023052:41665-41684 | None:intergenic | 30.0% | |
ATAAGTACTTGTAAGACTGT+TGG | - | tig0023052:41666-41685 | None:intergenic | 30.0% | |
ACTAATTTGAGCTTACTTAC+CGG | - | tig0023052:41690-41709 | None:intergenic | 30.0% | |
AAATTGAGGATGGATATTAG+AGG | - | tig0023052:41832-41851 | None:intergenic | 30.0% | |
ATTGACTAACAAATTGAGGA+TGG | - | tig0023052:41842-41861 | None:intergenic | 30.0% | |
!! | ATCCTCAATTTGTTAGTCAA+TGG | + | tig0023052:41841-41860 | Msa1404250:intron | 30.0% |
! | AACCATTGACTAACAAATTG+AGG | - | tig0023052:41846-41865 | None:intergenic | 30.0% |
!! | GTGGTTTGAGTTTTGTAAAA+CGG | + | tig0023052:41977-41996 | Msa1404250:intron | 30.0% |
!! | TGGTTTGAGTTTTGTAAAAC+GGG | + | tig0023052:41978-41997 | Msa1404250:intron | 30.0% |
!! | TCTATTTTGAAAGTAGTTGG+GGG | + | tig0023052:42373-42392 | Msa1404250:intron | 30.0% |
!! | TTCGATTTTCAGGAAAAGTA+TGG | + | tig0023052:42653-42672 | Msa1404250:intron | 30.0% |
CTAGTCGTTGATATTAATGT+GGG | + | tig0023052:42743-42762 | Msa1404250:CDS | 30.0% | |
! | AGTCCTCCTATTATTTCTTA+CGG | + | tig0023052:42981-43000 | Msa1404250:intron | 30.0% |
CATGAACCGTAAGAAATAAT+AGG | - | tig0023052:42990-43009 | None:intergenic | 30.0% | |
TAGGATGTTGAAAAATTAGC+TGG | + | tig0023052:43063-43082 | Msa1404250:intron | 30.0% | |
AGGATGTTGAAAAATTAGCT+GGG | + | tig0023052:43064-43083 | Msa1404250:intron | 30.0% | |
CTTATGGTTGAATTATGTAG+TGG | + | tig0023052:43097-43116 | Msa1404250:intron | 30.0% | |
TGAACAAAATAACCTGAAAC+CGG | + | tig0023052:43811-43830 | Msa1404250:CDS | 30.0% | |
TTTCTTCCGAAAAGAAAAAG+AGG | + | tig0023052:43843-43862 | Msa1404250:CDS | 30.0% | |
GATAAAGCAGAAAACAAGAA+AGG | - | tig0023052:44040-44059 | None:intergenic | 30.0% | |
TTATCTGTTTATTCTGAGCA+TGG | + | tig0023052:44081-44100 | Msa1404250:intron | 30.0% | |
TATAGTGATATAGAGATAGC+TGG | + | tig0023052:44104-44123 | Msa1404250:intron | 30.0% | |
TACAGCAGGAAAATTATATG+GGG | - | tig0023052:44185-44204 | None:intergenic | 30.0% | |
AAATGAAAATGAATTGAGCG+AGG | + | tig0023052:44306-44325 | Msa1404250:CDS | 30.0% | |
AGACAAAAATTAACGACTCT+TGG | - | tig0023052:44538-44557 | None:intergenic | 30.0% | |
!! | TTTCTAGGAGATACTTTTGA+GGG | - | tig0023052:44583-44602 | None:intergenic | 30.0% |
!! | ATTTCTAGGAGATACTTTTG+AGG | - | tig0023052:44584-44603 | None:intergenic | 30.0% |
TCCGTTCACAAAAAATTTCT+AGG | - | tig0023052:44598-44617 | None:intergenic | 30.0% | |
TAATCTACCAATTTACCACG+GGG | - | tig0023052:41078-41097 | None:intergenic | 35.0% | |
TGGTTTCAATGTGAAGATTG+TGG | + | tig0023052:41256-41275 | Msa1404250:CDS | 35.0% | |
TGAATAAGAAGGAACCTTGT+TGG | - | tig0023052:41332-41351 | None:intergenic | 35.0% | |
TTATAGATTAGGACCCTGTT+TGG | + | tig0023052:41539-41558 | Msa1404250:intron | 35.0% | |
TGGTAAGTGTTTGTGCTATA+AGG | - | tig0023052:41584-41603 | None:intergenic | 35.0% | |
AAGTACTTGTAAGACTGTTG+GGG | - | tig0023052:41664-41683 | None:intergenic | 35.0% | |
AGTCTTACAAGTACTTATGC+CGG | + | tig0023052:41668-41687 | Msa1404250:intron | 35.0% | |
ACTTGAGAAGCTGAATTAAG+GGG | - | tig0023052:41959-41978 | None:intergenic | 35.0% | |
CACTTGAGAAGCTGAATTAA+GGG | - | tig0023052:41960-41979 | None:intergenic | 35.0% | |
!!! | TTCTTTGGTTTTCCTCAATG+TGG | + | tig0023052:42039-42058 | Msa1404250:intron | 35.0% |
TCCTCGTATCATTACAATCA+TGG | + | tig0023052:42108-42127 | Msa1404250:intron | 35.0% | |
CCTCGTATCATTACAATCAT+GGG | + | tig0023052:42109-42128 | Msa1404250:intron | 35.0% | |
CTCGTATCATTACAATCATG+GGG | + | tig0023052:42110-42129 | Msa1404250:intron | 35.0% | |
ACTCACCTTCTAACTACTTT+AGG | + | tig0023052:42145-42164 | Msa1404250:intron | 35.0% | |
CTCACCTTCTAACTACTTTA+GGG | + | tig0023052:42146-42165 | Msa1404250:intron | 35.0% | |
AATGCCCTAAAGTAGTTAGA+AGG | - | tig0023052:42153-42172 | None:intergenic | 35.0% | |
CTAATACAGTGCAGTCAATT+TGG | - | tig0023052:42486-42505 | None:intergenic | 35.0% | |
! | CTCATTTTGCTTCGATTTTC+AGG | + | tig0023052:42643-42662 | Msa1404250:intron | 35.0% |
!! | AAAGTTTTTCCTTGGCCTTT+TGG | - | tig0023052:42680-42699 | None:intergenic | 35.0% |
! | CAGCATTCAAAGTTTTTCCT+TGG | - | tig0023052:42688-42707 | None:intergenic | 35.0% |
GCTAGTCGTTGATATTAATG+TGG | + | tig0023052:42742-42761 | Msa1404250:CDS | 35.0% | |
AGTATATACCTACAGAACCA+CGG | - | tig0023052:42785-42804 | None:intergenic | 35.0% | |
GAACCGTAAGAAATAATAGG+AGG | - | tig0023052:42987-43006 | None:intergenic | 35.0% | |
TACGGTTCATGCAATCATAA+AGG | + | tig0023052:42999-43018 | Msa1404250:intron | 35.0% | |
ACGGTTCATGCAATCATAAA+GGG | + | tig0023052:43000-43019 | Msa1404250:intron | 35.0% | |
AATCAGGTAAGAGTCTAAAC+AGG | + | tig0023052:43252-43271 | Msa1404250:intron | 35.0% | |
ACACTACAATATGCCGTTAT+TGG | - | tig0023052:43463-43482 | None:intergenic | 35.0% | |
! | AAATTATCTGTCTGGACTAG+TGG | - | tig0023052:43698-43717 | None:intergenic | 35.0% |
! | AGGAAACATGAAGCATTAGA+GGG | + | tig0023052:43863-43882 | Msa1404250:CDS | 35.0% |
!! | GAAAATGGGGAAGTATTTCA+GGG | + | tig0023052:43929-43948 | Msa1404250:CDS | 35.0% |
CAAGAGAGAGGAAAATAAAG+TGG | + | tig0023052:43960-43979 | Msa1404250:CDS | 35.0% | |
AACAATAAGCAGATTACAGC+AGG | - | tig0023052:44199-44218 | None:intergenic | 35.0% | |
!! | TCTGCTTATTGTTTTACTGG+TGG | + | tig0023052:44206-44225 | Msa1404250:intron | 35.0% |
TTCTTCATCTTCAATCCATC+AGG | - | tig0023052:44238-44257 | None:intergenic | 35.0% | |
ACAGAAACACAACTCATAGA+TGG | - | tig0023052:44358-44377 | None:intergenic | 35.0% | |
CAACAGGAATGTTCAATCTT+TGG | - | tig0023052:44501-44520 | None:intergenic | 35.0% | |
CAAAGATTGAACATTCCTGT+TGG | + | tig0023052:44499-44518 | Msa1404250:exon | 35.0% | |
AAGGAAACCCTAGAATAGCT+TGG | + | tig0023052:41111-41130 | Msa1404250:five_prime_UTR | 40.0% | |
TTAAGCCTTCACAAGAGTCA+AGG | - | tig0023052:41140-41159 | None:intergenic | 40.0% | |
AACTGGCGTTAACCTGATTT+CGG | - | tig0023052:41165-41184 | None:intergenic | 40.0% | |
!!! | TGGGCAACTTAGGTTTTTTG+AGG | - | tig0023052:41288-41307 | None:intergenic | 40.0% |
ATAAGAAGGAACCTTGTTGG+CGG | - | tig0023052:41329-41348 | None:intergenic | 40.0% | |
ATTGACTGTGGACAGATGTT+TGG | + | tig0023052:41436-41455 | Msa1404250:intron | 40.0% | |
CTTCTGTAATACACTGTGTG+TGG | - | tig0023052:41480-41499 | None:intergenic | 40.0% | |
CACACAGTGTATTACAGAAG+CGG | + | tig0023052:41480-41499 | Msa1404250:intron | 40.0% | |
GGTTCAAGTGTAACAACCTA+GGG | - | tig0023052:41726-41745 | None:intergenic | 40.0% | |
AGGTTCAAGTGTAACAACCT+AGG | - | tig0023052:41727-41746 | None:intergenic | 40.0% | |
AGCGATTTACTCACTTCTAG+AGG | + | tig0023052:41885-41904 | Msa1404250:intron | 40.0% | |
TTGAGAAGCTGAATTAAGGG+GGG | - | tig0023052:41957-41976 | None:intergenic | 40.0% | |
CTTGAGAAGCTGAATTAAGG+GGG | - | tig0023052:41958-41977 | None:intergenic | 40.0% | |
CCACTTGAGAAGCTGAATTA+AGG | - | tig0023052:41961-41980 | None:intergenic | 40.0% | |
CCTTAATTCAGCTTCTCAAG+TGG | + | tig0023052:41958-41977 | Msa1404250:intron | 40.0% | |
CCCATGATTGTAATGATACG+AGG | - | tig0023052:42112-42131 | None:intergenic | 40.0% | |
GGCATTCTAGTATCTACTGA+AGG | + | tig0023052:42167-42186 | Msa1404250:intron | 40.0% | |
CAAAAGTTCAGGGACCAAAT+CGG | + | tig0023052:42440-42459 | Msa1404250:intron | 40.0% | |
AACTATGACTCTCTCCGATT+TGG | - | tig0023052:42457-42476 | None:intergenic | 40.0% | |
TCGGAGAGAGTCATAGTTTA+AGG | + | tig0023052:42459-42478 | Msa1404250:intron | 40.0% | |
TTGACTGCACTGTATTAGTC+TGG | + | tig0023052:42488-42507 | Msa1404250:intron | 40.0% | |
! | CAGGAAAAGTATGGTCCAAA+AGG | + | tig0023052:42662-42681 | Msa1404250:intron | 40.0% |
! | CTTTGTTTGCCATCTTTGAC+AGG | - | tig0023052:42722-42741 | None:intergenic | 40.0% |
CTGTCAAAGATGGCAAACAA+AGG | + | tig0023052:42720-42739 | Msa1404250:CDS | 40.0% | |
CATGGTCTACATATCCTGTT+CGG | + | tig0023052:42924-42943 | Msa1404250:intron | 40.0% | |
TCTACATATCCTGTTCGGAT+GGG | + | tig0023052:42929-42948 | Msa1404250:intron | 40.0% | |
CGGTTCATGCAATCATAAAG+GGG | + | tig0023052:43001-43020 | Msa1404250:intron | 40.0% | |
GGTTCATGCAATCATAAAGG+GGG | + | tig0023052:43002-43021 | Msa1404250:intron | 40.0% | |
!!! | GCTGGGCCTTTTTTAACTTA+TGG | + | tig0023052:43081-43100 | Msa1404250:intron | 40.0% |
TGAGTGTCAACTGCCAATAA+CGG | + | tig0023052:43447-43466 | Msa1404250:intron | 40.0% | |
CATGCTGAAGGAAAGAAACA+CGG | + | tig0023052:43638-43657 | Msa1404250:CDS | 40.0% | |
ATGCTGAAGGAAAGAAACAC+GGG | + | tig0023052:43639-43658 | Msa1404250:CDS | 40.0% | |
! | TAATTTTGCGCCTGATGCAA+AGG | + | tig0023052:43712-43731 | Msa1404250:CDS | 40.0% |
!! | AAACTTCATTCACCGGTTTC+AGG | - | tig0023052:43826-43845 | None:intergenic | 40.0% |
TCGGAAGAAACTTCATTCAC+CGG | - | tig0023052:43833-43852 | None:intergenic | 40.0% | |
! | GAGGAAACATGAAGCATTAG+AGG | + | tig0023052:43862-43881 | Msa1404250:CDS | 40.0% |
ACATCAGTTGACGTGGAAAA+TGG | + | tig0023052:43914-43933 | Msa1404250:CDS | 40.0% | |
CATCAGTTGACGTGGAAAAT+GGG | + | tig0023052:43915-43934 | Msa1404250:CDS | 40.0% | |
ATCAGTTGACGTGGAAAATG+GGG | + | tig0023052:43916-43935 | Msa1404250:CDS | 40.0% | |
!! | GGAAAATGGGGAAGTATTTC+AGG | + | tig0023052:43928-43947 | Msa1404250:CDS | 40.0% |
! | GAGATAGCTGGTGACTTTTA+AGG | + | tig0023052:44116-44135 | Msa1404250:intron | 40.0% |
CACAACTCATAGATGGACAA+TGG | - | tig0023052:44351-44370 | None:intergenic | 40.0% | |
CTTGTTCTCAACTGCAAAGT+TGG | - | tig0023052:44462-44481 | None:intergenic | 40.0% | |
GAACAAGTATGTGCGATTAG+TGG | + | tig0023052:44475-44494 | Msa1404250:CDS | 40.0% | |
!!! | TATTTTGACGGAGATTCCGT+TGG | + | tig0023052:44700-44719 | Msa1404250:three_prime_UTR | 40.0% |
! | ACACTGTCTAGAACTAGCAT+TGG | - | tig0023052:44750-44769 | None:intergenic | 40.0% |
AAGGCTGCCAAGCTATTCTA+GGG | - | tig0023052:41121-41140 | None:intergenic | 45.0% | |
GAAGGCTTAAACCCGAAATC+AGG | + | tig0023052:41150-41169 | Msa1404250:five_prime_UTR | 45.0% | |
ACTGGCGTTAACCTGATTTC+GGG | - | tig0023052:41164-41183 | None:intergenic | 45.0% | |
!! | TAGCTTTCGTGCATTGACTG+TGG | + | tig0023052:41424-41443 | Msa1404250:intron | 45.0% |
AGTCATTCCAAAAAGGCCCT+AGG | + | tig0023052:41707-41726 | Msa1404250:intron | 45.0% | |
! | GTAACAACCTAGGGCCTTTT+TGG | - | tig0023052:41717-41736 | None:intergenic | 45.0% |
! | TACTCACTTCTAGAGGAGTC+TGG | + | tig0023052:41892-41911 | Msa1404250:intron | 45.0% |
AAACGGGTACCTATCTGTTG+TGG | + | tig0023052:41994-42013 | Msa1404250:intron | 45.0% | |
AACGGGTACCTATCTGTTGT+GGG | + | tig0023052:41995-42014 | Msa1404250:intron | 45.0% | |
AACTCCATCCCACAACAGAT+AGG | - | tig0023052:42006-42025 | None:intergenic | 45.0% | |
! | TGGTTTTCCTCAATGTGGCT+AGG | + | tig0023052:42044-42063 | Msa1404250:intron | 45.0% |
ACAAGATCCTAGCCACATTG+AGG | - | tig0023052:42054-42073 | None:intergenic | 45.0% | |
AAGTATGGTCCAAAAGGCCA+AGG | + | tig0023052:42668-42687 | Msa1404250:CDS | 45.0% | |
TTTGCCATCTTTGACAGGCT+TGG | - | tig0023052:42717-42736 | None:intergenic | 45.0% | |
ATATACCTACAGAACCACGG+AGG | - | tig0023052:42782-42801 | None:intergenic | 45.0% | |
GTCTACATATCCTGTTCGGA+TGG | + | tig0023052:42928-42947 | Msa1404250:intron | 45.0% | |
TATCCTGTTCGGATGGGAAT+TGG | + | tig0023052:42935-42954 | Msa1404250:intron | 45.0% | |
ATCCTGTTCGGATGGGAATT+GGG | + | tig0023052:42936-42955 | Msa1404250:intron | 45.0% | |
! | ATTAGCCTGCAAGTCTCTTG+TGG | + | tig0023052:43277-43296 | Msa1404250:intron | 45.0% |
TTGATCCACAAGAGACTTGC+AGG | - | tig0023052:43285-43304 | None:intergenic | 45.0% | |
GCAAGTCTCTTGTGGATCAA+AGG | + | tig0023052:43285-43304 | Msa1404250:intron | 45.0% | |
GCACTTCTTCTACATGCTGA+AGG | + | tig0023052:43626-43645 | Msa1404250:CDS | 45.0% | |
TGCTGAAGGAAAGAAACACG+GGG | + | tig0023052:43640-43659 | Msa1404250:CDS | 45.0% | |
CAGGCGCAAAATTATCTGTC+TGG | - | tig0023052:43706-43725 | None:intergenic | 45.0% | |
! | GGAGACGGGTTCTAATGATA+TGG | + | tig0023052:43742-43761 | Msa1404250:CDS | 45.0% |
TCAGAAGACTCGTGCAACTT+TGG | - | tig0023052:43794-43813 | None:intergenic | 45.0% | |
GAATGACACATCAGTTGACG+TGG | + | tig0023052:43907-43926 | Msa1404250:CDS | 45.0% | |
TAGATTCCTGCAGTGCTTTG+AGG | - | tig0023052:44276-44295 | None:intergenic | 45.0% | |
GGTCATATGACATCTCCAAC+AGG | - | tig0023052:44517-44536 | None:intergenic | 45.0% | |
CAAGGCTGCCAAGCTATTCT+AGG | - | tig0023052:41122-41141 | None:intergenic | 50.0% | |
!! | CGATGGCTCTGTTTTGCAAC+TGG | - | tig0023052:41182-41201 | None:intergenic | 50.0% |
CAGTGAAGCAGAACGAACGA+TGG | - | tig0023052:41199-41218 | None:intergenic | 50.0% | |
CGGAAGTGATTGGGCAACTT+AGG | - | tig0023052:41298-41317 | None:intergenic | 50.0% | |
GAGCACGATCGGAAGTGATT+GGG | - | tig0023052:41307-41326 | None:intergenic | 50.0% | |
GGTACCTATCTGTTGTGGGA+TGG | + | tig0023052:41999-42018 | Msa1404250:intron | 50.0% | |
CATGCAATCATAAAGGGGGC+AGG | + | tig0023052:43006-43025 | Msa1404250:intron | 50.0% | |
CTAGTGGTTGCTTCGAAGCA+TGG | - | tig0023052:43682-43701 | None:intergenic | 50.0% | |
TCCACTGCATCCTTTGCATC+AGG | - | tig0023052:43725-43744 | None:intergenic | 50.0% | |
TGCAAAGGATGCAGTGGAGA+CGG | + | tig0023052:43727-43746 | Msa1404250:CDS | 50.0% | |
!! | GGAAGTATTTCAGGGCGAGA+AGG | + | tig0023052:43937-43956 | Msa1404250:CDS | 50.0% |
!! | AGTTGTCCTCAAAGCACTGC+AGG | + | tig0023052:44267-44286 | Msa1404250:CDS | 50.0% |
CTCAACTGCAAAGTTGGAGC+TGG | - | tig0023052:44456-44475 | None:intergenic | 50.0% | |
GGCAGCCTTGACTCTTGTGA+AGG | + | tig0023052:41132-41151 | Msa1404250:five_prime_UTR | 55.0% | |
GGAGCACGATCGGAAGTGAT+TGG | - | tig0023052:41308-41327 | None:intergenic | 55.0% | |
GCTGCCAAGCCTGTCAAAGA+TGG | + | tig0023052:42710-42729 | Msa1404250:CDS | 55.0% | |
! | AACGTCCTCCGTGGTTCTGT+AGG | + | tig0023052:42774-42793 | Msa1404250:CDS | 55.0% |
AGCCCAATTCCCATCCGAAC+AGG | - | tig0023052:42941-42960 | None:intergenic | 55.0% | |
CTTCGAAGCATGGAACGCTC+GGG | - | tig0023052:43672-43691 | None:intergenic | 55.0% | |
GCTTCGAAGCATGGAACGCT+CGG | - | tig0023052:43673-43692 | None:intergenic | 55.0% | |
GCCTGATGCAAAGGATGCAG+TGG | + | tig0023052:43721-43740 | Msa1404250:CDS | 55.0% | |
GCAAAGGATGCAGTGGAGAC+GGG | + | tig0023052:43728-43747 | Msa1404250:CDS | 55.0% | |
TACTGGTGGCAGCATCCTGA+TGG | + | tig0023052:44220-44239 | Msa1404250:intron | 55.0% | |
CCTTGTTGGCGGAGCACGAT+CGG | - | tig0023052:41318-41337 | None:intergenic | 60.0% | |
GCTTAGCTGAACGTCCTCCG+TGG | + | tig0023052:42765-42784 | Msa1404250:CDS | 60.0% | |
AGGGCGAGAAGGCAAGAGAG+AGG | + | tig0023052:43948-43967 | Msa1404250:CDS | 60.0% | |
GAGCGAGGCGATTGAGCAGA+AGG | + | tig0023052:44321-44340 | Msa1404250:CDS | 60.0% | |
CCGATCGTGCTCCGCCAACA+AGG | + | tig0023052:41315-41334 | Msa1404250:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0023052 | gene | 41071 | 44783 | 41071 | ID=Msa1404250;Name=Msa1404250 |
tig0023052 | mRNA | 41071 | 44783 | 41071 | ID=Msa1404250-mRNA-1;Parent=Msa1404250;Name=Msa1404250-mRNA-1;_AED=0.08;_eAED=0.08;_QI=179|0.75|1|1|1|1|5|275|269 |
tig0023052 | exon | 41071 | 41336 | 41071 | ID=Msa1404250-mRNA-1:exon:19682;Parent=Msa1404250-mRNA-1 |
tig0023052 | exon | 42665 | 42795 | 42665 | ID=Msa1404250-mRNA-1:exon:19683;Parent=Msa1404250-mRNA-1 |
tig0023052 | exon | 43595 | 44012 | 43595 | ID=Msa1404250-mRNA-1:exon:19684;Parent=Msa1404250-mRNA-1 |
tig0023052 | exon | 44232 | 44342 | 44232 | ID=Msa1404250-mRNA-1:exon:19685;Parent=Msa1404250-mRNA-1 |
tig0023052 | exon | 44446 | 44783 | 44446 | ID=Msa1404250-mRNA-1:exon:19686;Parent=Msa1404250-mRNA-1 |
tig0023052 | five_prime_UTR | 41071 | 41249 | 41071 | ID=Msa1404250-mRNA-1:five_prime_utr;Parent=Msa1404250-mRNA-1 |
tig0023052 | CDS | 41250 | 41336 | 41250 | ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1 |
tig0023052 | CDS | 42665 | 42795 | 42665 | ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1 |
tig0023052 | CDS | 43595 | 44012 | 43595 | ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1 |
tig0023052 | CDS | 44232 | 44342 | 44232 | ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1 |
tig0023052 | CDS | 44446 | 44508 | 44446 | ID=Msa1404250-mRNA-1:cds;Parent=Msa1404250-mRNA-1 |
tig0023052 | three_prime_UTR | 44509 | 44783 | 44509 | ID=Msa1404250-mRNA-1:three_prime_utr;Parent=Msa1404250-mRNA-1 |
Gene Sequence |
Protein sequence |