AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1266190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266190 MtrunA17_Chr4g0070801 84.014 294 22 1 1 269 1 294 2.54e-176 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266190 AT2G19385.1 43.771 297 117 8 1 269 1 275 6.95e-57 184
Msa1266190 AT2G19380.1 31.220 205 88 7 1 164 1 193 8.20e-18 83.2
Msa1266190 AT2G19380.1 44.578 83 44 1 53 135 207 287 1.44e-13 70.9
Msa1266190 AT2G19380.1 50.794 63 31 0 58 120 142 204 5.14e-12 66.2

Find 83 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCAGTTGACGTGGAAAA+TGG 0.191316 8_2:-70944607 Msa1266190:CDS
GGAAAATGGGGAAGTATTTC+AGG 0.217234 8_2:-70944593 Msa1266190:CDS
AAACTTCATTCACCGGTTTC+AGG 0.267736 8_2:+70944698 None:intergenic
AACTGGCGTTAACCTGATTT+CGG 0.270078 8_2:+70947359 None:intergenic
CAAGGCTGCCAAGCTATTCT+AGG 0.278594 8_2:+70947402 None:intergenic
CAACAGGAATGTTCAATCTT+TGG 0.280454 8_2:+70944023 None:intergenic
ACGTTCAATTATTATCTTGT+AGG 0.290046 8_2:-70943858 Msa1266190:three_prime_UTR
CAACCTTAAAACTAAGACTA+TGG 0.299318 8_2:-70947290 Msa1266190:exon
ACTGGCGTTAACCTGATTTC+GGG 0.331028 8_2:+70947360 None:intergenic
TTCTTCTCCCCGTGGTAAAT+TGG 0.333367 8_2:-70947453 Msa1266190:five_prime_UTR
CGGATAATTTATTGTTGATT+GGG 0.340775 8_2:-70943907 Msa1266190:three_prime_UTR
ACGGATAATTTATTGTTGAT+TGG 0.350472 8_2:-70943908 Msa1266190:three_prime_UTR
CGGAAGTGATTGGGCAACTT+AGG 0.376657 8_2:+70947226 None:intergenic
CATCAGTTGACGTGGAAAAT+GGG 0.380294 8_2:-70944606 Msa1266190:CDS
CTTGTTCTCAACTGCAAAGT+TGG 0.386423 8_2:+70944062 None:intergenic
ATTGGTAGATTAAACGATAA+AGG 0.397953 8_2:-70947435 Msa1266190:five_prime_UTR
TAGATTCCTGCAGTGCTTTG+AGG 0.398509 8_2:+70944248 None:intergenic
GAGGAAACATGAAGCATTAG+AGG 0.399707 8_2:-70944659 Msa1266190:CDS
TTCTTCATCTTCAATCCATC+AGG 0.401465 8_2:+70944286 None:intergenic
AATTCAACATACAAATTTCA+AGG 0.401997 8_2:+70944519 None:intergenic
GGAGCACGATCGGAAGTGAT+TGG 0.404214 8_2:+70947216 None:intergenic
CTTTGTTTGCCATCTTTGAC+AGG 0.405588 8_2:+70945802 None:intergenic
GAAGGCTTAAACCCGAAATC+AGG 0.418945 8_2:-70947371 Msa1266190:five_prime_UTR
TCAGAAGACTCGTGCAACTT+TGG 0.435496 8_2:+70944730 None:intergenic
GCTTCGAAGCATGGAACGCT+CGG 0.436244 8_2:+70944851 None:intergenic
TCCACTGCATCCTTTGCATC+AGG 0.440074 8_2:+70944799 None:intergenic
TTTGCCATCTTTGACAGGCT+TGG 0.441946 8_2:+70945807 None:intergenic
TTAAAACTAAGACTATGGTT+TGG 0.442584 8_2:-70947285 Msa1266190:exon
TGAATAAGAAGGAACCTTGT+TGG 0.444790 8_2:+70947192 None:intergenic
CAGGCGCAAAATTATCTGTC+TGG 0.451138 8_2:+70944818 None:intergenic
GGAGACGGGTTCTAATGATA+TGG 0.458688 8_2:-70944779 Msa1266190:CDS
CAAGAGAGAGGAAAATAAAG+TGG 0.462140 8_2:-70944561 Msa1266190:CDS
CAGGAAAAGTATGGTCCAAA+AGG 0.462353 8_2:-70945859 Msa1266190:CDS
GGCAGCCTTGACTCTTGTGA+AGG 0.465298 8_2:-70947389 Msa1266190:five_prime_UTR
TGAACAAAATAACCTGAAAC+CGG 0.469254 8_2:-70944710 Msa1266190:CDS
TACTGGTGGCAGCATCCTGA+TGG 0.473972 8_2:-70944301 Msa1266190:intron
GAGCACGATCGGAAGTGATT+GGG 0.477804 8_2:+70947217 None:intergenic
CCTTGTTGGCGGAGCACGAT+CGG 0.488710 8_2:+70947206 None:intergenic
CTCAACTGCAAAGTTGGAGC+TGG 0.492457 8_2:+70944068 None:intergenic
GAACAAGTATGTGCGATTAG+TGG 0.494270 8_2:-70944046 Msa1266190:CDS
GCAAAGGATGCAGTGGAGAC+GGG 0.502647 8_2:-70944793 Msa1266190:CDS
TGCAAAGGATGCAGTGGAGA+CGG 0.510937 8_2:-70944794 Msa1266190:CDS
CTTCGAAGCATGGAACGCTC+GGG 0.518211 8_2:+70944852 None:intergenic
GGTCATATGACATCTCCAAC+AGG 0.518542 8_2:+70944007 None:intergenic
TCGGAAGAAACTTCATTCAC+CGG 0.522070 8_2:+70944691 None:intergenic
CTAGTGGTTGCTTCGAAGCA+TGG 0.522690 8_2:+70944842 None:intergenic
TGGTTTCAATGTGAAGATTG+TGG 0.532835 8_2:-70947265 Msa1266190:CDS
GAGCGAGGCGATTGAGCAGA+AGG 0.538864 8_2:-70944200 Msa1266190:intron
ACACTGTCTAGAACTAGCAT+TGG 0.542344 8_2:+70943774 None:intergenic
GCTGCCAAGCCTGTCAAAGA+TGG 0.543446 8_2:-70945811 Msa1266190:CDS
AAGGCTGCCAAGCTATTCTA+GGG 0.547202 8_2:+70947403 None:intergenic
AGATTAAACGATAAAGGTAA+AGG 0.549147 8_2:-70947429 Msa1266190:five_prime_UTR
AAATTATCTGTCTGGACTAG+TGG 0.555342 8_2:+70944826 None:intergenic
GCTAGTCGTTGATATTAATG+TGG 0.556605 8_2:-70945779 Msa1266190:CDS
CTAGTCGTTGATATTAATGT+GGG 0.562155 8_2:-70945778 Msa1266190:CDS
TTAATCTACCAATTTACCAC+GGG 0.565698 8_2:+70947445 None:intergenic
AGTTGTCCTCAAAGCACTGC+AGG 0.573521 8_2:-70944254 Msa1266190:CDS
AACGTCCTCCGTGGTTCTGT+AGG 0.574054 8_2:-70945747 Msa1266190:intron
GAAAATGGGGAAGTATTTCA+GGG 0.576073 8_2:-70944592 Msa1266190:CDS
AAGGAAACCCTAGAATAGCT+TGG 0.579841 8_2:-70947410 Msa1266190:five_prime_UTR
ATGCTGAAGGAAAGAAACAC+GGG 0.581891 8_2:-70944882 Msa1266190:CDS
CAAAGATTGAACATTCCTGT+TGG 0.583351 8_2:-70944022 Msa1266190:exon
GCACTTCTTCTACATGCTGA+AGG 0.586895 8_2:-70944895 Msa1266190:CDS
TTAAGCCTTCACAAGAGTCA+AGG 0.595017 8_2:+70947384 None:intergenic
ATCAGTTGACGTGGAAAATG+GGG 0.599482 8_2:-70944605 Msa1266190:CDS
AAGTATGGTCCAAAAGGCCA+AGG 0.606114 8_2:-70945853 Msa1266190:CDS
ATAAGAAGGAACCTTGTTGG+CGG 0.607122 8_2:+70947195 None:intergenic
AGGAAACATGAAGCATTAGA+GGG 0.613312 8_2:-70944658 Msa1266190:CDS
GGAAGTATTTCAGGGCGAGA+AGG 0.613916 8_2:-70944584 Msa1266190:CDS
TTTAATCTACCAATTTACCA+CGG 0.617936 8_2:+70947444 None:intergenic
AGGGCGAGAAGGCAAGAGAG+AGG 0.620409 8_2:-70944573 Msa1266190:CDS
CATGCTGAAGGAAAGAAACA+CGG 0.639025 8_2:-70944883 Msa1266190:CDS
CTGTCAAAGATGGCAAACAA+AGG 0.639970 8_2:-70945801 Msa1266190:CDS
TTTCATGTTTCTTCTCCCCG+TGG 0.645515 8_2:-70947461 None:intergenic
TAAATGAGAATACAAACCAA+CGG 0.648163 8_2:+70943805 None:intergenic
GCCTGATGCAAAGGATGCAG+TGG 0.663160 8_2:-70944800 Msa1266190:CDS
GAATGACACATCAGTTGACG+TGG 0.669822 8_2:-70944614 Msa1266190:CDS
AAATGAAAATGAATTGAGCG+AGG 0.672838 8_2:-70944215 Msa1266190:CDS
CAGTGAAGCAGAACGAACGA+TGG 0.690490 8_2:+70947325 None:intergenic
AGTATATACCTACAGAACCA+CGG 0.706642 8_2:+70945739 None:intergenic
TAATCTACCAATTTACCACG+GGG 0.769258 8_2:+70947446 None:intergenic
TGCTGAAGGAAAGAAACACG+GGG 0.771538 8_2:-70944881 Msa1266190:CDS
ATATACCTACAGAACCACGG+AGG 0.855057 8_2:+70945742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATCATTTATATTATTTTA+AGG - chr8_2:70945091-70945110 Msa1266190:intron 10.0%
!!! TTTTATGTAAATGTAAATAT+AGG - chr8_2:70945733-70945752 Msa1266190:intron 10.0%
!!! TTTTTATTATAAAATAGTCT+CGG + chr8_2:70946175-70946194 None:intergenic 10.0%
!! TTTACTAAAATTAATACTAA+AGG + chr8_2:70947078-70947097 None:intergenic 10.0%
!!! ATAATTAATGGACAAAAATA+AGG + chr8_2:70944212-70944231 None:intergenic 15.0%
!! TGAATAATAAACTATCAATT+TGG - chr8_2:70944927-70944946 Msa1266190:CDS 15.0%
!!! TGATAGATTGATAATAATTT+AGG + chr8_2:70945016-70945035 None:intergenic 15.0%
!! AATATAAAAATTCATTATGC+TGG + chr8_2:70945219-70945238 None:intergenic 15.0%
!!! CAATTTGTTTCAAAAAATAA+AGG + chr8_2:70945862-70945881 None:intergenic 15.0%
!!! CTTTATTTTTTGAAACAAAT+TGG - chr8_2:70945860-70945879 Msa1266190:intron 15.0%
!! AATACATTTCTTAGTTTAAT+TGG - chr8_2:70946031-70946050 Msa1266190:intron 15.0%
!! TTTATCTATATATGTTATAG+TGG - chr8_2:70946743-70946762 Msa1266190:intron 15.0%
!! TTATCTATATATGTTATAGT+GGG - chr8_2:70946744-70946763 Msa1266190:intron 15.0%
!! TTGTCCATTAATTATAGATT+AGG - chr8_2:70944217-70944236 Msa1266190:CDS 20.0%
!!! TTTTCTGTGTAAATAAACTA+TGG - chr8_2:70944612-70944631 Msa1266190:CDS 20.0%
!! TTTCTGTGTAAATAAACTAT+GGG - chr8_2:70944613-70944632 Msa1266190:CDS 20.0%
!!! TATCATTTTCTCTCATATTT+TGG - chr8_2:70944959-70944978 Msa1266190:intron 20.0%
!!! AATTTCATTTTCATAGTTCA+GGG + chr8_2:70944986-70945005 None:intergenic 20.0%
!!! TAATTTCATTTTCATAGTTC+AGG + chr8_2:70944987-70945006 None:intergenic 20.0%
!! TTGTTATATTTCAAAAGTTC+AGG - chr8_2:70945118-70945137 Msa1266190:intron 20.0%
!! TGTTATATTTCAAAAGTTCA+GGG - chr8_2:70945119-70945138 Msa1266190:intron 20.0%
!! ATTCAACCATAAGTTAAAAA+AGG + chr8_2:70945779-70945798 None:intergenic 20.0%
!! CACAATCGAAAATTATAAAA+AGG + chr8_2:70946109-70946128 None:intergenic 20.0%
!! AAAAACAAATATTGGTAAAG+AGG + chr8_2:70946201-70946220 None:intergenic 20.0%
!! TCTAGAAGAAAAACAAATAT+TGG + chr8_2:70946209-70946228 None:intergenic 20.0%
!! TAGATATTATTTCACTCTTA+TGG - chr8_2:70946225-70946244 Msa1266190:intron 20.0%
!! AATTCAACATACAAATTTCA+AGG + chr8_2:70946694-70946713 None:intergenic 20.0%
!!! GAAATTTGTATGTTGAATTT+TGG - chr8_2:70946695-70946714 Msa1266190:intron 20.0%
!!! AACAAAAGAGAATATTTTGA+CGG - chr8_2:70947377-70947396 Msa1266190:five_prime_UTR 20.0%
! TTTAATCTACCAATTTACCA+CGG + chr8_2:70943769-70943788 None:intergenic 25.0%
! ATTGGTAGATTAAACGATAA+AGG - chr8_2:70943775-70943794 Msa1266190:three_prime_UTR 25.0%
! AGATTAAACGATAAAGGTAA+AGG - chr8_2:70943781-70943800 Msa1266190:three_prime_UTR 25.0%
!!! AAACCATAGTCTTAGTTTTA+AGG + chr8_2:70943926-70943945 None:intergenic 25.0%
! TTAAAACTAAGACTATGGTT+TGG - chr8_2:70943925-70943944 Msa1266190:three_prime_UTR 25.0%
! TGAACATGAATTGAATAAGA+AGG + chr8_2:70944032-70944051 None:intergenic 25.0%
! AACAACGGAAAAATTAATCA+TGG + chr8_2:70944084-70944103 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr8_2:70944244-70944263 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr8_2:70944245-70944264 None:intergenic 25.0%
! TCAAATTAGTCATTCCAAAA+AGG - chr8_2:70944389-70944408 Msa1266190:intron 25.0%
! TAGAGAGCTAAATTCAAAAT+AGG + chr8_2:70944436-70944455 None:intergenic 25.0%
!!! TCTCTAAAATGAGAAAATCA+AGG - chr8_2:70944450-70944469 Msa1266190:intron 25.0%
! TTCTGTGTAAATAAACTATG+GGG - chr8_2:70944614-70944633 Msa1266190:CDS 25.0%
!!! TTTACTCAATGCTATTTCTT+TGG - chr8_2:70944713-70944732 Msa1266190:CDS 25.0%
!! TTCAAAGTTTCCTTTAACTT+AGG - chr8_2:70944762-70944781 Msa1266190:CDS 25.0%
! AAATGATAGTCCTAAGTTAA+AGG + chr8_2:70944775-70944794 None:intergenic 25.0%
! TGAGAGAAAATGATAGTTTA+GGG + chr8_2:70944954-70944973 None:intergenic 25.0%
! ATGAGAGAAAATGATAGTTT+AGG + chr8_2:70944955-70944974 None:intergenic 25.0%
! TAGAAGAGAGTGATAATTTA+GGG + chr8_2:70945046-70945065 None:intergenic 25.0%
! ATAGAAGAGAGTGATAATTT+AGG + chr8_2:70945047-70945066 None:intergenic 25.0%
!!! TCTTCTATTTTGAAAGTAGT+TGG - chr8_2:70945059-70945078 Msa1266190:intron 25.0%
!!! CTTCTATTTTGAAAGTAGTT+GGG - chr8_2:70945060-70945079 Msa1266190:intron 25.0%
!!! TTCTATTTTGAAAGTAGTTG+GGG - chr8_2:70945061-70945080 Msa1266190:intron 25.0%
! AGAGAGAAACATAATTATCA+TGG - chr8_2:70945595-70945614 Msa1266190:intron 25.0%
!! TTTTACATTAAACGTAAGCA+TGG + chr8_2:70945812-70945831 None:intergenic 25.0%
!!! TTGAAACAAATTGGTTTTTG+AGG - chr8_2:70945869-70945888 Msa1266190:intron 25.0%
! GAATGATATTAGTGTTAATC+AGG - chr8_2:70945925-70945944 Msa1266190:intron 25.0%
! GAAAAAAGTAAATAAAAGCG+CGG + chr8_2:70946087-70946106 None:intergenic 25.0%
! ATTATTTCACTCTTATGGTT+TGG - chr8_2:70946230-70946249 Msa1266190:intron 25.0%
!! ATGTTTCCTCTTTTTCTTTT+CGG + chr8_2:70946541-70946560 None:intergenic 25.0%
! TTACAGCAGGAAAATTATAT+GGG + chr8_2:70946875-70946894 None:intergenic 25.0%
! ATTACAGCAGGAAAATTATA+TGG + chr8_2:70946876-70946895 None:intergenic 25.0%
!!! TAATCTGCTTATTGTTTTAC+TGG - chr8_2:70946892-70946911 Msa1266190:intron 25.0%
!!! TCCTAGAAATTTTTTGTGAA+CGG - chr8_2:70947283-70947302 Msa1266190:exon 25.0%
! ACGGATAATTTATTGTTGAT+TGG - chr8_2:70947302-70947321 Msa1266190:five_prime_UTR 25.0%
!! CGGATAATTTATTGTTGATT+GGG - chr8_2:70947303-70947322 Msa1266190:five_prime_UTR 25.0%
! ACGTTCAATTATTATCTTGT+AGG - chr8_2:70947352-70947371 Msa1266190:five_prime_UTR 25.0%
! TAAATGAGAATACAAACCAA+CGG + chr8_2:70947408-70947427 None:intergenic 25.0%
TTAATCTACCAATTTACCAC+GGG + chr8_2:70943768-70943787 None:intergenic 30.0%
CAACCTTAAAACTAAGACTA+TGG - chr8_2:70943920-70943939 Msa1266190:three_prime_UTR 30.0%
AAGCTACATAGCATAAACAA+CGG + chr8_2:70944099-70944118 None:intergenic 30.0%
TGGACAAAAATAAGGCAAAA+AGG + chr8_2:70944204-70944223 None:intergenic 30.0%
GGGTCCTAATCTATAATTAA+TGG + chr8_2:70944224-70944243 None:intergenic 30.0%
CTTATGAAAACAGCTTATTG+TGG + chr8_2:70944293-70944312 None:intergenic 30.0%
AAGCTATATGAACATGTCAT+AGG - chr8_2:70944310-70944329 Msa1266190:intron 30.0%
TAAGTACTTGTAAGACTGTT+GGG + chr8_2:70944354-70944373 None:intergenic 30.0%
ATAAGTACTTGTAAGACTGT+TGG + chr8_2:70944355-70944374 None:intergenic 30.0%
ACTAATTTGAGCTTACTTAC+CGG + chr8_2:70944379-70944398 None:intergenic 30.0%
AAATTGAGGATGGATATTAG+AGG + chr8_2:70944521-70944540 None:intergenic 30.0%
ATTGACTAACAAATTGAGGA+TGG + chr8_2:70944531-70944550 None:intergenic 30.0%
!! ATCCTCAATTTGTTAGTCAA+TGG - chr8_2:70944530-70944549 Msa1266190:intron 30.0%
! AACCATTGACTAACAAATTG+AGG + chr8_2:70944535-70944554 None:intergenic 30.0%
!! GTGGTTTGAGTTTTGTAAAA+CGG - chr8_2:70944666-70944685 Msa1266190:CDS 30.0%
!! TGGTTTGAGTTTTGTAAAAC+GGG - chr8_2:70944667-70944686 Msa1266190:CDS 30.0%
!! TCTATTTTGAAAGTAGTTGG+GGG - chr8_2:70945062-70945081 Msa1266190:intron 30.0%
!! TTCGATTTTCAGGAAAAGTA+TGG - chr8_2:70945342-70945361 Msa1266190:intron 30.0%
CTAGTCGTTGATATTAATGT+GGG - chr8_2:70945432-70945451 Msa1266190:intron 30.0%
! AGTCCTCCTATTATTTCTTA+CGG - chr8_2:70945670-70945689 Msa1266190:intron 30.0%
CATGAACCGTAAGAAATAAT+AGG + chr8_2:70945679-70945698 None:intergenic 30.0%
TAGGATGTTGAAAAATTAGC+TGG - chr8_2:70945752-70945771 Msa1266190:CDS 30.0%
AGGATGTTGAAAAATTAGCT+GGG - chr8_2:70945753-70945772 Msa1266190:CDS 30.0%
CTTATGGTTGAATTATGTAG+TGG - chr8_2:70945786-70945805 Msa1266190:CDS 30.0%
TGAACAAAATAACCTGAAAC+CGG - chr8_2:70946500-70946519 Msa1266190:intron 30.0%
TTTCTTCCGAAAAGAAAAAG+AGG - chr8_2:70946532-70946551 Msa1266190:intron 30.0%
GATAAAGCAGAAAACAAGAA+AGG + chr8_2:70946729-70946748 None:intergenic 30.0%
TTATCTGTTTATTCTGAGCA+TGG - chr8_2:70946770-70946789 Msa1266190:intron 30.0%
TATAGTGATATAGAGATAGC+TGG - chr8_2:70946793-70946812 Msa1266190:intron 30.0%
TACAGCAGGAAAATTATATG+GGG + chr8_2:70946874-70946893 None:intergenic 30.0%
AAATGAAAATGAATTGAGCG+AGG - chr8_2:70946995-70947014 Msa1266190:intron 30.0%
AGACAAAAATTAACGACTCT+TGG + chr8_2:70947227-70947246 None:intergenic 30.0%
!! TTTCTAGGAGATACTTTTGA+GGG + chr8_2:70947272-70947291 None:intergenic 30.0%
!! ATTTCTAGGAGATACTTTTG+AGG + chr8_2:70947273-70947292 None:intergenic 30.0%
TCCGTTCACAAAAAATTTCT+AGG + chr8_2:70947287-70947306 None:intergenic 30.0%
TAATCTACCAATTTACCACG+GGG + chr8_2:70943767-70943786 None:intergenic 35.0%
TGGTTTCAATGTGAAGATTG+TGG - chr8_2:70943945-70943964 Msa1266190:three_prime_UTR 35.0%
TGAATAAGAAGGAACCTTGT+TGG + chr8_2:70944021-70944040 None:intergenic 35.0%
TTATAGATTAGGACCCTGTT+TGG - chr8_2:70944228-70944247 Msa1266190:CDS 35.0%
TGGTAAGTGTTTGTGCTATA+AGG + chr8_2:70944273-70944292 None:intergenic 35.0%
AAGTACTTGTAAGACTGTTG+GGG + chr8_2:70944353-70944372 None:intergenic 35.0%
AGTCTTACAAGTACTTATGC+CGG - chr8_2:70944357-70944376 Msa1266190:intron 35.0%
ACTTGAGAAGCTGAATTAAG+GGG + chr8_2:70944648-70944667 None:intergenic 35.0%
CACTTGAGAAGCTGAATTAA+GGG + chr8_2:70944649-70944668 None:intergenic 35.0%
!!! TTCTTTGGTTTTCCTCAATG+TGG - chr8_2:70944728-70944747 Msa1266190:CDS 35.0%
TCCTCGTATCATTACAATCA+TGG - chr8_2:70944797-70944816 Msa1266190:CDS 35.0%
CCTCGTATCATTACAATCAT+GGG - chr8_2:70944798-70944817 Msa1266190:CDS 35.0%
CTCGTATCATTACAATCATG+GGG - chr8_2:70944799-70944818 Msa1266190:CDS 35.0%
ACTCACCTTCTAACTACTTT+AGG - chr8_2:70944834-70944853 Msa1266190:CDS 35.0%
CTCACCTTCTAACTACTTTA+GGG - chr8_2:70944835-70944854 Msa1266190:CDS 35.0%
AATGCCCTAAAGTAGTTAGA+AGG + chr8_2:70944842-70944861 None:intergenic 35.0%
CTAATACAGTGCAGTCAATT+TGG + chr8_2:70945175-70945194 None:intergenic 35.0%
! CTCATTTTGCTTCGATTTTC+AGG - chr8_2:70945332-70945351 Msa1266190:intron 35.0%
!! AAAGTTTTTCCTTGGCCTTT+TGG + chr8_2:70945369-70945388 None:intergenic 35.0%
! CAGCATTCAAAGTTTTTCCT+TGG + chr8_2:70945377-70945396 None:intergenic 35.0%
GCTAGTCGTTGATATTAATG+TGG - chr8_2:70945431-70945450 Msa1266190:intron 35.0%
AGTATATACCTACAGAACCA+CGG + chr8_2:70945474-70945493 None:intergenic 35.0%
GAACCGTAAGAAATAATAGG+AGG + chr8_2:70945676-70945695 None:intergenic 35.0%
TACGGTTCATGCAATCATAA+AGG - chr8_2:70945688-70945707 Msa1266190:intron 35.0%
ACGGTTCATGCAATCATAAA+GGG - chr8_2:70945689-70945708 Msa1266190:intron 35.0%
AATCAGGTAAGAGTCTAAAC+AGG - chr8_2:70945941-70945960 Msa1266190:intron 35.0%
ACACTACAATATGCCGTTAT+TGG + chr8_2:70946152-70946171 None:intergenic 35.0%
! AAATTATCTGTCTGGACTAG+TGG + chr8_2:70946387-70946406 None:intergenic 35.0%
! AGGAAACATGAAGCATTAGA+GGG - chr8_2:70946552-70946571 Msa1266190:intron 35.0%
!! GAAAATGGGGAAGTATTTCA+GGG - chr8_2:70946618-70946637 Msa1266190:intron 35.0%
CAAGAGAGAGGAAAATAAAG+TGG - chr8_2:70946649-70946668 Msa1266190:intron 35.0%
AACAATAAGCAGATTACAGC+AGG + chr8_2:70946888-70946907 None:intergenic 35.0%
!! TCTGCTTATTGTTTTACTGG+TGG - chr8_2:70946895-70946914 Msa1266190:intron 35.0%
TTCTTCATCTTCAATCCATC+AGG + chr8_2:70946927-70946946 None:intergenic 35.0%
ACAGAAACACAACTCATAGA+TGG + chr8_2:70947047-70947066 None:intergenic 35.0%
CAACAGGAATGTTCAATCTT+TGG + chr8_2:70947190-70947209 None:intergenic 35.0%
CAAAGATTGAACATTCCTGT+TGG - chr8_2:70947188-70947207 Msa1266190:intron 35.0%
AAGGAAACCCTAGAATAGCT+TGG - chr8_2:70943800-70943819 Msa1266190:three_prime_UTR 40.0%
TTAAGCCTTCACAAGAGTCA+AGG + chr8_2:70943829-70943848 None:intergenic 40.0%
AACTGGCGTTAACCTGATTT+CGG + chr8_2:70943854-70943873 None:intergenic 40.0%
!!! TGGGCAACTTAGGTTTTTTG+AGG + chr8_2:70943977-70943996 None:intergenic 40.0%
ATAAGAAGGAACCTTGTTGG+CGG + chr8_2:70944018-70944037 None:intergenic 40.0%
ATTGACTGTGGACAGATGTT+TGG - chr8_2:70944125-70944144 Msa1266190:intron 40.0%
CTTCTGTAATACACTGTGTG+TGG + chr8_2:70944169-70944188 None:intergenic 40.0%
CACACAGTGTATTACAGAAG+CGG - chr8_2:70944169-70944188 Msa1266190:intron 40.0%
GGTTCAAGTGTAACAACCTA+GGG + chr8_2:70944415-70944434 None:intergenic 40.0%
AGGTTCAAGTGTAACAACCT+AGG + chr8_2:70944416-70944435 None:intergenic 40.0%
AGCGATTTACTCACTTCTAG+AGG - chr8_2:70944574-70944593 Msa1266190:CDS 40.0%
TTGAGAAGCTGAATTAAGGG+GGG + chr8_2:70944646-70944665 None:intergenic 40.0%
CTTGAGAAGCTGAATTAAGG+GGG + chr8_2:70944647-70944666 None:intergenic 40.0%
CCACTTGAGAAGCTGAATTA+AGG + chr8_2:70944650-70944669 None:intergenic 40.0%
CCTTAATTCAGCTTCTCAAG+TGG - chr8_2:70944647-70944666 Msa1266190:CDS 40.0%
CCCATGATTGTAATGATACG+AGG + chr8_2:70944801-70944820 None:intergenic 40.0%
GGCATTCTAGTATCTACTGA+AGG - chr8_2:70944856-70944875 Msa1266190:CDS 40.0%
CAAAAGTTCAGGGACCAAAT+CGG - chr8_2:70945129-70945148 Msa1266190:intron 40.0%
AACTATGACTCTCTCCGATT+TGG + chr8_2:70945146-70945165 None:intergenic 40.0%
TCGGAGAGAGTCATAGTTTA+AGG - chr8_2:70945148-70945167 Msa1266190:intron 40.0%
TTGACTGCACTGTATTAGTC+TGG - chr8_2:70945177-70945196 Msa1266190:intron 40.0%
! CAGGAAAAGTATGGTCCAAA+AGG - chr8_2:70945351-70945370 Msa1266190:intron 40.0%
! CTTTGTTTGCCATCTTTGAC+AGG + chr8_2:70945411-70945430 None:intergenic 40.0%
CTGTCAAAGATGGCAAACAA+AGG - chr8_2:70945409-70945428 Msa1266190:intron 40.0%
CATGGTCTACATATCCTGTT+CGG - chr8_2:70945613-70945632 Msa1266190:intron 40.0%
TCTACATATCCTGTTCGGAT+GGG - chr8_2:70945618-70945637 Msa1266190:intron 40.0%
CGGTTCATGCAATCATAAAG+GGG - chr8_2:70945690-70945709 Msa1266190:intron 40.0%
GGTTCATGCAATCATAAAGG+GGG - chr8_2:70945691-70945710 Msa1266190:intron 40.0%
!!! GCTGGGCCTTTTTTAACTTA+TGG - chr8_2:70945770-70945789 Msa1266190:CDS 40.0%
TGAGTGTCAACTGCCAATAA+CGG - chr8_2:70946136-70946155 Msa1266190:intron 40.0%
CATGCTGAAGGAAAGAAACA+CGG - chr8_2:70946327-70946346 Msa1266190:intron 40.0%
ATGCTGAAGGAAAGAAACAC+GGG - chr8_2:70946328-70946347 Msa1266190:intron 40.0%
! TAATTTTGCGCCTGATGCAA+AGG - chr8_2:70946401-70946420 Msa1266190:intron 40.0%
!! AAACTTCATTCACCGGTTTC+AGG + chr8_2:70946515-70946534 None:intergenic 40.0%
TCGGAAGAAACTTCATTCAC+CGG + chr8_2:70946522-70946541 None:intergenic 40.0%
! GAGGAAACATGAAGCATTAG+AGG - chr8_2:70946551-70946570 Msa1266190:intron 40.0%
ACATCAGTTGACGTGGAAAA+TGG - chr8_2:70946603-70946622 Msa1266190:intron 40.0%
CATCAGTTGACGTGGAAAAT+GGG - chr8_2:70946604-70946623 Msa1266190:intron 40.0%
ATCAGTTGACGTGGAAAATG+GGG - chr8_2:70946605-70946624 Msa1266190:intron 40.0%
!! GGAAAATGGGGAAGTATTTC+AGG - chr8_2:70946617-70946636 Msa1266190:intron 40.0%
! GAGATAGCTGGTGACTTTTA+AGG - chr8_2:70946805-70946824 Msa1266190:intron 40.0%
CACAACTCATAGATGGACAA+TGG + chr8_2:70947040-70947059 None:intergenic 40.0%
CTTGTTCTCAACTGCAAAGT+TGG + chr8_2:70947151-70947170 None:intergenic 40.0%
GAACAAGTATGTGCGATTAG+TGG - chr8_2:70947164-70947183 Msa1266190:intron 40.0%
!!! TATTTTGACGGAGATTCCGT+TGG - chr8_2:70947389-70947408 Msa1266190:five_prime_UTR 40.0%
! ACACTGTCTAGAACTAGCAT+TGG + chr8_2:70947439-70947458 None:intergenic 40.0%
AAGGCTGCCAAGCTATTCTA+GGG + chr8_2:70943810-70943829 None:intergenic 45.0%
GAAGGCTTAAACCCGAAATC+AGG - chr8_2:70943839-70943858 Msa1266190:three_prime_UTR 45.0%
ACTGGCGTTAACCTGATTTC+GGG + chr8_2:70943853-70943872 None:intergenic 45.0%
!! TAGCTTTCGTGCATTGACTG+TGG - chr8_2:70944113-70944132 Msa1266190:intron 45.0%
AGTCATTCCAAAAAGGCCCT+AGG - chr8_2:70944396-70944415 Msa1266190:intron 45.0%
! GTAACAACCTAGGGCCTTTT+TGG + chr8_2:70944406-70944425 None:intergenic 45.0%
! TACTCACTTCTAGAGGAGTC+TGG - chr8_2:70944581-70944600 Msa1266190:CDS 45.0%
AAACGGGTACCTATCTGTTG+TGG - chr8_2:70944683-70944702 Msa1266190:CDS 45.0%
AACGGGTACCTATCTGTTGT+GGG - chr8_2:70944684-70944703 Msa1266190:CDS 45.0%
AACTCCATCCCACAACAGAT+AGG + chr8_2:70944695-70944714 None:intergenic 45.0%
! TGGTTTTCCTCAATGTGGCT+AGG - chr8_2:70944733-70944752 Msa1266190:CDS 45.0%
ACAAGATCCTAGCCACATTG+AGG + chr8_2:70944743-70944762 None:intergenic 45.0%
AAGTATGGTCCAAAAGGCCA+AGG - chr8_2:70945357-70945376 Msa1266190:intron 45.0%
TTTGCCATCTTTGACAGGCT+TGG + chr8_2:70945406-70945425 None:intergenic 45.0%
ATATACCTACAGAACCACGG+AGG + chr8_2:70945471-70945490 None:intergenic 45.0%
GTCTACATATCCTGTTCGGA+TGG - chr8_2:70945617-70945636 Msa1266190:intron 45.0%
TATCCTGTTCGGATGGGAAT+TGG - chr8_2:70945624-70945643 Msa1266190:intron 45.0%
ATCCTGTTCGGATGGGAATT+GGG - chr8_2:70945625-70945644 Msa1266190:intron 45.0%
! ATTAGCCTGCAAGTCTCTTG+TGG - chr8_2:70945966-70945985 Msa1266190:intron 45.0%
TTGATCCACAAGAGACTTGC+AGG + chr8_2:70945974-70945993 None:intergenic 45.0%
GCAAGTCTCTTGTGGATCAA+AGG - chr8_2:70945974-70945993 Msa1266190:intron 45.0%
GCACTTCTTCTACATGCTGA+AGG - chr8_2:70946315-70946334 Msa1266190:intron 45.0%
TGCTGAAGGAAAGAAACACG+GGG - chr8_2:70946329-70946348 Msa1266190:intron 45.0%
CAGGCGCAAAATTATCTGTC+TGG + chr8_2:70946395-70946414 None:intergenic 45.0%
! GGAGACGGGTTCTAATGATA+TGG - chr8_2:70946431-70946450 Msa1266190:intron 45.0%
TCAGAAGACTCGTGCAACTT+TGG + chr8_2:70946483-70946502 None:intergenic 45.0%
GAATGACACATCAGTTGACG+TGG - chr8_2:70946596-70946615 Msa1266190:intron 45.0%
TAGATTCCTGCAGTGCTTTG+AGG + chr8_2:70946965-70946984 None:intergenic 45.0%
GGTCATATGACATCTCCAAC+AGG + chr8_2:70947206-70947225 None:intergenic 45.0%
CAAGGCTGCCAAGCTATTCT+AGG + chr8_2:70943811-70943830 None:intergenic 50.0%
!! CGATGGCTCTGTTTTGCAAC+TGG + chr8_2:70943871-70943890 None:intergenic 50.0%
CAGTGAAGCAGAACGAACGA+TGG + chr8_2:70943888-70943907 None:intergenic 50.0%
CGGAAGTGATTGGGCAACTT+AGG + chr8_2:70943987-70944006 None:intergenic 50.0%
GAGCACGATCGGAAGTGATT+GGG + chr8_2:70943996-70944015 None:intergenic 50.0%
GGTACCTATCTGTTGTGGGA+TGG - chr8_2:70944688-70944707 Msa1266190:CDS 50.0%
CATGCAATCATAAAGGGGGC+AGG - chr8_2:70945695-70945714 Msa1266190:intron 50.0%
CTAGTGGTTGCTTCGAAGCA+TGG + chr8_2:70946371-70946390 None:intergenic 50.0%
TCCACTGCATCCTTTGCATC+AGG + chr8_2:70946414-70946433 None:intergenic 50.0%
TGCAAAGGATGCAGTGGAGA+CGG - chr8_2:70946416-70946435 Msa1266190:intron 50.0%
!! GGAAGTATTTCAGGGCGAGA+AGG - chr8_2:70946626-70946645 Msa1266190:intron 50.0%
!! AGTTGTCCTCAAAGCACTGC+AGG - chr8_2:70946956-70946975 Msa1266190:intron 50.0%
CTCAACTGCAAAGTTGGAGC+TGG + chr8_2:70947145-70947164 None:intergenic 50.0%
GGCAGCCTTGACTCTTGTGA+AGG - chr8_2:70943821-70943840 Msa1266190:three_prime_UTR 55.0%
GGAGCACGATCGGAAGTGAT+TGG + chr8_2:70943997-70944016 None:intergenic 55.0%
GCTGCCAAGCCTGTCAAAGA+TGG - chr8_2:70945399-70945418 Msa1266190:intron 55.0%
! AACGTCCTCCGTGGTTCTGT+AGG - chr8_2:70945463-70945482 Msa1266190:intron 55.0%
AGCCCAATTCCCATCCGAAC+AGG + chr8_2:70945630-70945649 None:intergenic 55.0%
CTTCGAAGCATGGAACGCTC+GGG + chr8_2:70946361-70946380 None:intergenic 55.0%
GCTTCGAAGCATGGAACGCT+CGG + chr8_2:70946362-70946381 None:intergenic 55.0%
GCCTGATGCAAAGGATGCAG+TGG - chr8_2:70946410-70946429 Msa1266190:intron 55.0%
GCAAAGGATGCAGTGGAGAC+GGG - chr8_2:70946417-70946436 Msa1266190:intron 55.0%
TACTGGTGGCAGCATCCTGA+TGG - chr8_2:70946909-70946928 Msa1266190:intron 55.0%
CCTTGTTGGCGGAGCACGAT+CGG + chr8_2:70944007-70944026 None:intergenic 60.0%
GCTTAGCTGAACGTCCTCCG+TGG - chr8_2:70945454-70945473 Msa1266190:intron 60.0%
AGGGCGAGAAGGCAAGAGAG+AGG - chr8_2:70946637-70946656 Msa1266190:intron 60.0%
GAGCGAGGCGATTGAGCAGA+AGG - chr8_2:70947010-70947029 Msa1266190:intron 60.0%
CCGATCGTGCTCCGCCAACA+AGG - chr8_2:70944004-70944023 Msa1266190:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 70943760 70947472 70943760 ID=Msa1266190;Name=Msa1266190
chr8_2 mRNA 70943760 70947472 70943760 ID=Msa1266190-mRNA-1;Parent=Msa1266190;Name=Msa1266190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=179|0.75|1|1|1|1|5|275|269
chr8_2 exon 70943760 70944097 70943760 ID=Msa1266190-mRNA-1:exon:23653;Parent=Msa1266190-mRNA-1
chr8_2 exon 70944201 70944311 70944201 ID=Msa1266190-mRNA-1:exon:23652;Parent=Msa1266190-mRNA-1
chr8_2 exon 70944531 70944948 70944531 ID=Msa1266190-mRNA-1:exon:23651;Parent=Msa1266190-mRNA-1
chr8_2 exon 70945748 70945878 70945748 ID=Msa1266190-mRNA-1:exon:23650;Parent=Msa1266190-mRNA-1
chr8_2 exon 70947207 70947472 70947207 ID=Msa1266190-mRNA-1:exon:23649;Parent=Msa1266190-mRNA-1
chr8_2 five_prime_UTR 70947294 70947472 70947294 ID=Msa1266190-mRNA-1:five_prime_utr;Parent=Msa1266190-mRNA-1
chr8_2 CDS 70947207 70947293 70947207 ID=Msa1266190-mRNA-1:cds;Parent=Msa1266190-mRNA-1
chr8_2 CDS 70945748 70945878 70945748 ID=Msa1266190-mRNA-1:cds;Parent=Msa1266190-mRNA-1
chr8_2 CDS 70944531 70944948 70944531 ID=Msa1266190-mRNA-1:cds;Parent=Msa1266190-mRNA-1
chr8_2 CDS 70944201 70944311 70944201 ID=Msa1266190-mRNA-1:cds;Parent=Msa1266190-mRNA-1
chr8_2 CDS 70944035 70944097 70944035 ID=Msa1266190-mRNA-1:cds;Parent=Msa1266190-mRNA-1
chr8_2 three_prime_UTR 70943760 70944034 70943760 ID=Msa1266190-mRNA-1:three_prime_utr;Parent=Msa1266190-mRNA-1
Gene Sequence

>Msa1266190

ATGGTTTGGTTTCAATGTGAAGATTGTGGAGACAACCTCAAAAAACCTAAGTTGCCCAATCACTTCCGATCGTGCTCCGCCAACAAGGAAAAGTATGGTCCAAAAGGCCAAGGAAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGATGGCAAACAAAGGCTAGTCGTTGATATTAATGTGGGCTTAGCTGAACGTCCTCCGTGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCACTTCTTCTACATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCGTTCCATGCTTCGAAGCAACCACTAGTCCAGACAGATAATTTTGCGCCTGATGCAAAGGATGCAGTGGAGACGGGTTCTAATGATATGGCAAAAGATGACAAAATTTCAGAGCAGCCAAAGTTGCACGAGTCTTCTGAACAAAATAACCTGAAACCGGTGAATGAAGTTTCTTCCGAAAAGAAAAAGAGGAAACATGAAGCATTAGAGGGTGACGTTATTAAAAAAAACAAGAATGACACATCAGTTGACGTGGAAAATGGGGAAGTATTTCAGGGCGAGAAGGCAAGAGAGAGGAAAATAAAGTGGAAGAAGTTTATCAAAGCAGCCTTGAAATTTCATCCTGATGGATTGAAGATGAAGAAATTGAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCTAGCATTGTAGTAAATGAAAATGAATTGAGCGAGGCGATTGAGCAGAAGATAAACTCCAGCTCCAACTTTGCAGTTGAGAACAAGTATGTGCGATTAGTGGCCAAAGATTGA

Protein sequence

>Msa1266190

MVWFQCEDCGDNLKKPKLPNHFRSCSANKEKYGPKGQGKTLNAAAAKPVKDGKQRLVVDINVGLAERPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASKQPLVQTDNFAPDAKDAVETGSNDMAKDDKISEQPKLHESSEQNNLKPVNEVSSEKKKRKHEALEGDVIKKNKNDTSVDVENGEVFQGEKARERKIKWKKFIKAALKFHPDGLKMKKLRKVVLKALQESSIVVNENELSEAIEQKINSSSNFAVENKYVRLVAKD*