AlfalfaGEDB | Msa1404850

M. sativa cultivar zhongmu-4 / Msa1404850

KEGG: K11366
GO: -
PFAM: PF00443.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404850	RHN64024.1	96.429	84	3	0	6	89	169	252	2.02e-53	178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404850	sp\|Q9LEW0\|UBP22_ARATH	50.000	92	43	1	3	91	448	539	1.34e-24	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404850	A0A396II78	96.429	84	3	0	6	89	169	252	9.63e-54	178

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1034500	Msa1404850	0.800959	1.128330e-48	-8.615850e-47
Msa1215560	Msa1404850	0.924597	5.698624e-90	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404850	MtrunA17_Chr4g0064671	96.429	84	3	0	6	89	169	252	1.85e-57	178
Msa1404850	MtrunA17_Chr1g0149991	54.808	104	43	1	6	109	452	551	4.01e-34	124
Msa1404850	MtrunA17_Chr6g0458441	39.744	78	43	4	10	83	349	426	6.21e-11	58.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404850	AT5G10790.2	50.000	92	43	1	3	91	319	410	7.03e-26	100
Msa1404850	AT5G10790.1	50.000	92	43	1	3	91	448	539	1.36e-25	100

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Find 23 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATGGCATATCATTA+GGG	0.428866	tig0023091:+60913	None:intergenic
AAACATTGTGAGGGCTGCTC+AGG	0.399967	tig0023091:-61069	Msa1404850:CDS
AAATTTGCAAAATGGTAAAG+AGG	0.517259	tig0023091:-61746	None:intergenic
AACAATTCAAACTCAGAACA+TGG	0.598642	tig0023091:+61203	None:intergenic
AACATTGTGAGGGCTGCTCA+GGG	0.594864	tig0023091:-61068	Msa1404850:CDS
AAGCAAAGCAACTGATAAAT+CGG	0.429703	tig0023091:-61007	Msa1404850:CDS
AAGTTGATGAAAACATTGTG+AGG	0.627661	tig0023091:-61079	Msa1404850:CDS
ACCATGACATATGATGCCAA+TGG	0.694643	tig0023091:+60951	None:intergenic
ACCATTGGCATCATATGTCA+TGG	0.588411	tig0023091:-60952	Msa1404850:CDS
AGTTGATGAAAACATTGTGA+GGG	0.699031	tig0023091:-61078	Msa1404850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGAGGTTAGTGAAATAG+AGG	-	tig0023091:60921-60940	Msa1404850:CDS	30.0%
TTAACGGAAACATTAATGGA+GGG	+	tig0023091:60965-60984	None:intergenic	30.0%
TTTAACGGAAACATTAATGG+AGG	+	tig0023091:60966-60985	None:intergenic	30.0%
CCATTAATGTTTCCGTTAAA+AGG	-	tig0023091:60966-60985	Msa1404850:CDS	30.0%
AATGTTTCCGTTAAAAGGTA+TGG	-	tig0023091:60971-60990	Msa1404850:CDS	30.0%
ATTTCTCATCCTCAATCTTA+TGG	-	tig0023091:61173-61192	Msa1404850:CDS	30.0%
AGAGAAAATGAAATAGCCTT+CGG	+	tig0023091:61264-61283	None:intergenic	30.0%
AACAATTCAAACTCAGAACA+TGG	+	tig0023091:61452-61471	None:intergenic	30.0%
AAGCAAAGCAACTGATAAAT+CGG	-	tig0023091:61645-61664	Msa1404850:intron	30.0%
TAAAGAGGTTAGTGAAATAG+AGG	-	tig0023091:60921-60940	Msa1404850:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023091	gene	60917	61757	60917	ID=Msa1404850;Name=Msa1404850
tig0023091	mRNA	60917	61757	60917	ID=Msa1404850-mRNA-1;Parent=Msa1404850;Name=Msa1404850-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|124
tig0023091	exon	61747	61757	61747	ID=Msa1404850-mRNA-1:exon:23843;Parent=Msa1404850-mRNA-1
tig0023091	exon	60917	61280	60917	ID=Msa1404850-mRNA-1:exon:23842;Parent=Msa1404850-mRNA-1
tig0023091	CDS	61747	61757	61747	ID=Msa1404850-mRNA-1:cds;Parent=Msa1404850-mRNA-1
tig0023091	CDS	60917	61280	60917	ID=Msa1404850-mRNA-1:cds;Parent=Msa1404850-mRNA-1

Gene Sequence	>Msa1404850 ATGGTAAAGAGCACAGCTGATAGAATATTTCCTTTTGATGGGGATGAGCCAGATGCTTCAAATGATCCATGTTCTGAGTTTGAATTGTTTGCTGTCGTCACTCACTCTGGTAAGTTAGATGCTGGTCATTATGTGACATATCTGCGATTAAGCAATCAATGGTACAAGTGTGATGATTCTTGGGTTACTCAAGTTGATGAAAACATTGTGAGGGCTGCTCAGGGTTACATGATGTTCTATGTACAGAAGATGCTTTACTATAAAGCAAAGCAACTGATAAATCGGTCGCCTCATGATTGGCACAGGAGATGGTCCAAACCATTGGCATCATATGTCATGGTCAATATCAGTTTTCACCCTAATGATATGCCATGA
Protein sequence	>Msa1404850 MVKSTADRIFPFDGDEPDASNDPCSEFELFAVVTHSGKLDAGHYVTYLRLSNQWYKCDDSWVTQVDENIVRAAQGYMMFYVQKMLYYKAKQLINRSPHDWHRRWSKPLASYVMVNISFHPNDMP*