Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405450 | XP_003590793.2 | 96.624 | 474 | 11 | 1 | 1 | 474 | 1 | 469 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405450 | sp|Q8VXY9|UAH_ARATH | 78.634 | 454 | 85 | 4 | 28 | 473 | 26 | 475 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405450 | G7I3Z0 | 96.624 | 474 | 11 | 1 | 1 | 474 | 1 | 469 | 0.0 | 931 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0576020 | Msa1405450 | 0.808552 | 2.927654e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405450 | MtrunA17_Chr1g0187131 | 96.624 | 474 | 11 | 1 | 1 | 474 | 1 | 469 | 0.0 | 931 |
| Msa1405450 | MtrunA17_Chr2g0296941 | 31.043 | 422 | 261 | 7 | 72 | 466 | 56 | 474 | 5.06e-48 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405450 | AT5G43600.1 | 78.634 | 454 | 85 | 4 | 28 | 473 | 26 | 475 | 0.0 | 699 |
| Msa1405450 | AT4G20070.1 | 31.163 | 430 | 266 | 7 | 69 | 471 | 99 | 525 | 7.21e-51 | 181 |
| Msa1405450 | AT4G20070.2 | 34.014 | 294 | 172 | 4 | 69 | 343 | 99 | 389 | 1.44e-36 | 140 |
Find 123 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCATGACTCTTTGTTTA+TGG | 0.075402 | tig0023138:+46450 | Msa1405450:CDS |
| TCTTAGATTGATGAACTTTC+TGG | 0.113957 | tig0023138:+43463 | Msa1405450:intron |
| TGCTTTGTGCAGCCGCTTAT+TGG | 0.159998 | tig0023138:+45186 | Msa1405450:intron |
| ATTAGATGGTTTAGACAAAA+AGG | 0.234240 | tig0023138:-47126 | None:intergenic |
| GATGCTGTTGGTAACATATT+TGG | 0.239325 | tig0023138:+44181 | Msa1405450:CDS |
| GAGAAACACGTCTTGGAATC+TGG | 0.290253 | tig0023138:+45837 | Msa1405450:CDS |
| TTGCAGCTCCTGCAAGTCTA+AGG | 0.299708 | tig0023138:+45509 | Msa1405450:CDS |
| AATTCAACCCTTAGACTTGC+AGG | 0.301726 | tig0023138:-45517 | None:intergenic |
| AGCAAATCGCACATAGAAAT+TGG | 0.316482 | tig0023138:+45997 | Msa1405450:CDS |
| ATACTACTGAAGGGACAATT+TGG | 0.336534 | tig0023138:-47002 | None:intergenic |
| TTTATACTAGCAAACTCTTC+AGG | 0.337867 | tig0023138:-46938 | None:intergenic |
| TTGTGCAGCCGCTTATTGGC+TGG | 0.339371 | tig0023138:+45190 | Msa1405450:intron |
| CATAGAACAAGGGCCTATTC+TGG | 0.341073 | tig0023138:+45369 | Msa1405450:CDS |
| TAGCAAACTCTTCAGGCTTA+TGG | 0.358386 | tig0023138:-46931 | None:intergenic |
| TTGCTCCAGGATGCAGTTGC+AGG | 0.363852 | tig0023138:-45960 | None:intergenic |
| AGGATATATTAACACCCTTA+TGG | 0.366138 | tig0023138:-47210 | None:intergenic |
| GGAAAATATGATGGAGTTGT+TGG | 0.392292 | tig0023138:+44445 | Msa1405450:CDS |
| CATCGATGCTATACCTTACT+CGG | 0.392312 | tig0023138:+44423 | Msa1405450:CDS |
| GGGCTTGCTGCAGTTGCAAC+AGG | 0.394043 | tig0023138:+44394 | Msa1405450:CDS |
| TTAGATGCTGCAAGGTCTGC+TGG | 0.401111 | tig0023138:+45271 | Msa1405450:CDS |
| CTTGTGTTGACTATCATTGC+AGG | 0.401502 | tig0023138:+47037 | Msa1405450:three_prime_UTR |
| GAAAATATGATGGAGTTGTT+GGG | 0.402681 | tig0023138:+44446 | Msa1405450:CDS |
| TGACGACTGCTTCATCAGAT+AGG | 0.406360 | tig0023138:-46366 | None:intergenic |
| TGTTGCAACTGCAGCAAGCC+CGG | 0.407600 | tig0023138:-44392 | None:intergenic |
| TTGCAGAGTCTGAGCATCAT+AGG | 0.413088 | tig0023138:-43357 | None:intergenic |
| GTGCCGTCCTTATGCCTAAC+AGG | 0.420469 | tig0023138:+45563 | Msa1405450:CDS |
| TCGGAAGAACCCACACGCTT+TGG | 0.420823 | tig0023138:+45072 | Msa1405450:CDS |
| CATCTAAGAAGGATACGTTT+TGG | 0.421925 | tig0023138:-45255 | None:intergenic |
| CGCTTTGGAATAAGTTGCTT+AGG | 0.436892 | tig0023138:+45087 | Msa1405450:CDS |
| AAAGATAGCAGCCACCTGTT+AGG | 0.437842 | tig0023138:-45577 | None:intergenic |
| TGTGCAGCCGCTTATTGGCT+GGG | 0.439185 | tig0023138:+45191 | Msa1405450:intron |
| TGAGTTTCATATCATCAATC+AGG | 0.445316 | tig0023138:+46333 | Msa1405450:CDS |
| AACCTATGTATATAACCATA+AGG | 0.450213 | tig0023138:+47195 | Msa1405450:three_prime_UTR |
| AAGCCATCAATGTCTTGAAA+AGG | 0.452788 | tig0023138:+44485 | Msa1405450:CDS |
| ATTTCTATGTGCGATTTGCT+AGG | 0.453162 | tig0023138:-45994 | None:intergenic |
| CTCAGTGAGCTTGACACCTC+GGG | 0.455549 | tig0023138:-46314 | None:intergenic |
| GGGTTCAAGAATTGAGTAAC+CGG | 0.464660 | tig0023138:-43315 | None:intergenic |
| AGAAACACGTCTTGGAATCT+GGG | 0.466268 | tig0023138:+45838 | Msa1405450:CDS |
| GTCAAATGGTGTAAAAGTAT+TGG | 0.471269 | tig0023138:+46967 | Msa1405450:CDS |
| ATGACTCTTTGTTTATGGCC+AGG | 0.475673 | tig0023138:+46455 | Msa1405450:CDS |
| TGTTAATATATCCTTGTAGT+TGG | 0.476576 | tig0023138:+47219 | Msa1405450:three_prime_UTR |
| TGTAGGGATGGCAGTGAACC+CGG | 0.479777 | tig0023138:+44373 | Msa1405450:intron |
| ACCTATGTATATAACCATAA+GGG | 0.483329 | tig0023138:+47196 | Msa1405450:three_prime_UTR |
| AGACGTGTTTCTCAACTGCC+AGG | 0.483332 | tig0023138:-45827 | None:intergenic |
| TCCATGGTTGAGATGATTGA+AGG | 0.484068 | tig0023138:-43284 | None:intergenic |
| GAGCAGAAATGATGCTGGTC+TGG | 0.485198 | tig0023138:+45788 | Msa1405450:intron |
| AGTATAAAAGATATGTCAAA+TGG | 0.486176 | tig0023138:+46953 | Msa1405450:CDS |
| CTCGACTCAGGTATATCTAT+AGG | 0.486261 | tig0023138:+45472 | Msa1405450:intron |
| GTACCTTCGTCCTCCAGAAT+AGG | 0.486813 | tig0023138:-45382 | None:intergenic |
| GGTATCCTGCAACTGCATCC+TGG | 0.493387 | tig0023138:+45955 | Msa1405450:intron |
| CACCTGCTCCATCAGTAACC+AGG | 0.493616 | tig0023138:+43497 | Msa1405450:CDS |
| AGTCTAAGGGTTGAATTTGA+AGG | 0.495118 | tig0023138:+45523 | Msa1405450:CDS |
| TTGGTAACATATTTGGTCGT+TGG | 0.498780 | tig0023138:+44188 | Msa1405450:CDS |
| CATAAACAAAGAGTCATGAT+AGG | 0.503371 | tig0023138:-46449 | None:intergenic |
| TTTCTATGTGCGATTTGCTA+GGG | 0.507359 | tig0023138:-45993 | None:intergenic |
| CCTTACTCGGGAAAATATGA+TGG | 0.509108 | tig0023138:+44436 | Msa1405450:CDS |
| GGCAGCCGCTGAATTAGCCC+TGG | 0.510323 | tig0023138:+45809 | Msa1405450:CDS |
| GTTGCAACTGCAGCAAGCCC+GGG | 0.512122 | tig0023138:-44391 | None:intergenic |
| TAATTGCAGGGTGTCTCCAA+TGG | 0.515169 | tig0023138:+46576 | Msa1405450:intron |
| TTTCAAACCTAAAAGATCGT+TGG | 0.519496 | tig0023138:+45032 | Msa1405450:CDS |
| GCAGCCACCTGTTAGGCATA+AGG | 0.521384 | tig0023138:-45570 | None:intergenic |
| AGACCTTGCAGCATCTAAGA+AGG | 0.530450 | tig0023138:-45266 | None:intergenic |
| GAAGGCAATGGTGGCCATGC+AGG | 0.531611 | tig0023138:+45541 | Msa1405450:CDS |
| ACCCTTATGGTTATATACAT+AGG | 0.535123 | tig0023138:-47197 | None:intergenic |
| GGGATGCTATTGATTGCTCC+AGG | 0.535136 | tig0023138:-45973 | None:intergenic |
| CAGTAAATACCTTTGTAACA+TGG | 0.542692 | tig0023138:-46613 | None:intergenic |
| AGGGTTGAATTTGAAGGCAA+TGG | 0.544238 | tig0023138:+45529 | Msa1405450:CDS |
| AATTGCAGGGTGTCTCCAAT+GGG | 0.545945 | tig0023138:+46577 | Msa1405450:intron |
| GGCAGTTGAGAAACACGTCT+TGG | 0.547610 | tig0023138:+45830 | Msa1405450:CDS |
| GTTGATACCGTTGGCACTGT+TGG | 0.548107 | tig0023138:+45864 | Msa1405450:CDS |
| AAAATATGATGGAGTTGTTG+GGG | 0.552492 | tig0023138:+44447 | Msa1405450:CDS |
| GACGACTGCTTCATCAGATA+GGG | 0.552858 | tig0023138:-46365 | None:intergenic |
| GATAGTGAAGAGAATGAAGT+GGG | 0.554819 | tig0023138:-43335 | None:intergenic |
| TTGGAATAAGTTGCTTAGGA+AGG | 0.556520 | tig0023138:+45091 | Msa1405450:CDS |
| TAGACTTGCAGGAGCTGCAA+TGG | 0.558242 | tig0023138:-45506 | None:intergenic |
| ACTCAGTGAGCTTGACACCT+CGG | 0.561616 | tig0023138:-46315 | None:intergenic |
| GTAACCGGAAAATTGTTCCA+TGG | 0.564773 | tig0023138:-43300 | None:intergenic |
| TGCAGCTCCTGCAAGTCTAA+GGG | 0.569479 | tig0023138:+45510 | Msa1405450:CDS |
| TGCTGGTCTATCTGTAAGAG+AGG | 0.570001 | tig0023138:+44159 | Msa1405450:CDS |
| GCAACTTATTCCAAAGCGTG+TGG | 0.571770 | tig0023138:-45082 | None:intergenic |
| TGCTCAGACTCTGCAAAACC+AGG | 0.574111 | tig0023138:+43364 | Msa1405450:CDS |
| TCTGGGTCTGTTGATACCGT+TGG | 0.574941 | tig0023138:+45855 | Msa1405450:CDS |
| GTAGAATTGCACATAGAACA+AGG | 0.577230 | tig0023138:+45358 | Msa1405450:CDS |
| TCTGTAAGAGAGGATGCTGT+TGG | 0.578585 | tig0023138:+44169 | Msa1405450:CDS |
| TACAAAACCCTGGTTACTGA+TGG | 0.580980 | tig0023138:-43505 | None:intergenic |
| GGAAGTCATATTATTTACAT+CGG | 0.582332 | tig0023138:+45053 | Msa1405450:CDS |
| CTGAAGGGACAATTTGGCTA+AGG | 0.584714 | tig0023138:-46996 | None:intergenic |
| GGATAGTGAAGAGAATGAAG+TGG | 0.584744 | tig0023138:-43336 | None:intergenic |
| GGAATGAAAATCATGCCCAT+TGG | 0.585366 | tig0023138:-46592 | None:intergenic |
| TATCATCAATCAGGATCCAC+CGG | 0.585926 | tig0023138:+46342 | Msa1405450:CDS |
| GTTGAATTTGAAGGCAATGG+TGG | 0.588343 | tig0023138:+45532 | Msa1405450:CDS |
| GTAGGGATGGCAGTGAACCC+GGG | 0.597353 | tig0023138:+44374 | Msa1405450:intron |
| GCATAAGGACGGCACCTGCA+TGG | 0.597367 | tig0023138:-45555 | None:intergenic |
| ACATGGAGCAGAAATGATGC+TGG | 0.599655 | tig0023138:+45783 | Msa1405450:intron |
| TTGACTATCATTGCAGGACA+AGG | 0.604245 | tig0023138:+47043 | Msa1405450:three_prime_UTR |
| TTTATCAGTGTACAAAACCC+TGG | 0.605389 | tig0023138:-43515 | None:intergenic |
| CCCTTCAATCATCTCAACCA+TGG | 0.607191 | tig0023138:+43283 | Msa1405450:CDS |
| ATTACATAAGATACTACTGA+AGG | 0.610162 | tig0023138:-47012 | None:intergenic |
| TCTCACTCCCAGCCAATAAG+CGG | 0.612263 | tig0023138:-45198 | None:intergenic |
| ATACACAGTGGCCAACTACA+AGG | 0.614741 | tig0023138:-47230 | None:intergenic |
| CAACTTATTCCAAAGCGTGT+GGG | 0.616426 | tig0023138:-45081 | None:intergenic |
| TAACTTACCAACAGTGCCAA+CGG | 0.618887 | tig0023138:-45871 | None:intergenic |
| ATCGATGCTATACCTTACTC+GGG | 0.621735 | tig0023138:+44424 | Msa1405450:CDS |
| ATGTTGATGAGATGAAATTG+AGG | 0.621743 | tig0023138:-43243 | None:intergenic |
| ACCCTGGTTACTGATGGAGC+AGG | 0.622503 | tig0023138:-43499 | None:intergenic |
| ACTGCTTCATCAGATAGGGC+CGG | 0.627902 | tig0023138:-46361 | None:intergenic |
| GACGTGTTTCTCAACTGCCA+GGG | 0.634598 | tig0023138:-45826 | None:intergenic |
| CCATGGTTGAGATGATTGAA+GGG | 0.636449 | tig0023138:-43283 | None:intergenic |
| AGTAAGGTATAGCATCGATG+TGG | 0.640745 | tig0023138:-44420 | None:intergenic |
| GCTTCATCAGATAGGGCCGG+TGG | 0.641389 | tig0023138:-46358 | None:intergenic |
| ACCTGCTCCATCAGTAACCA+GGG | 0.647638 | tig0023138:+43498 | Msa1405450:CDS |
| TATCCTTCTTAGATGCTGCA+AGG | 0.652589 | tig0023138:+45263 | Msa1405450:CDS |
| TTACATAAGATACTACTGAA+GGG | 0.657232 | tig0023138:-47011 | None:intergenic |
| TGAAGCAGTCGTCAACGCAG+TGG | 0.659205 | tig0023138:+46375 | Msa1405450:CDS |
| GTAAGGTATAGCATCGATGT+GGG | 0.659646 | tig0023138:-44419 | None:intergenic |
| AACTGCCAGGGCTAATTCAG+CGG | 0.666792 | tig0023138:-45814 | None:intergenic |
| CCACCTGTTAGGCATAAGGA+CGG | 0.675285 | tig0023138:-45566 | None:intergenic |
| TAGAATTGCACATAGAACAA+GGG | 0.675382 | tig0023138:+45359 | Msa1405450:CDS |
| AGATACTAGAGACATTGATG+AGG | 0.686727 | tig0023138:+46234 | Msa1405450:intron |
| AGAACAAGGGCCTATTCTGG+AGG | 0.689732 | tig0023138:+45372 | Msa1405450:CDS |
| ATTAGAATAACTAAAACCCG+AGG | 0.693337 | tig0023138:+46298 | Msa1405450:CDS |
| GGGCCTATTCTGGAGGACGA+AGG | 0.703853 | tig0023138:+45379 | Msa1405450:CDS |
| CACTGTTGATGAGTAGCGAG+TGG | 0.710879 | tig0023138:+43106 | Msa1405450:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATATAAGTAATTATA+AGG | - | tig0023138:44913-44932 | None:intergenic | 10.0% |
| !! | ATAGATATTTAATATGTAAT+TGG | + | tig0023138:46198-46217 | Msa1405450:intron | 10.0% |
| !!! | TTTTTGGATATTTTTTTAGT+TGG | + | tig0023138:43603-43622 | Msa1405450:intron | 15.0% |
| !! | TTGTGTATGATTATAAAATT+AGG | + | tig0023138:43879-43898 | Msa1405450:intron | 15.0% |
| !!! | TGAGAATTTTAAATTCAAAA+AGG | - | tig0023138:45724-45743 | None:intergenic | 15.0% |
| !!! | AGTATTATTTTTAAATCACA+TGG | + | tig0023138:45766-45785 | Msa1405450:intron | 15.0% |
| !!! | AAATAAATTGTTTTGAATGA+AGG | - | tig0023138:45930-45949 | None:intergenic | 15.0% |
| !!! | TCAAAACAATTTATTTTACA+AGG | + | tig0023138:45934-45953 | Msa1405450:intron | 15.0% |
| !! | TGAAAAAAATAAACAACTAT+TGG | - | tig0023138:46094-46113 | None:intergenic | 15.0% |
| !!! | CAAAAAATCCTTTTTTTTGT+TGG | + | tig0023138:43408-43427 | Msa1405450:intron | 20.0% |
| !!! | CTATATAAAGTTTCAGTTTT+TGG | + | tig0023138:43587-43606 | Msa1405450:intron | 20.0% |
| !! | AACAAGAGTAAAGTTTATAA+AGG | - | tig0023138:44103-44122 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGCTGATAT+AGG | + | tig0023138:44516-44535 | Msa1405450:intron | 20.0% |
| !! | ATTATTTCAAAGGAAGAATT+AGG | + | tig0023138:44667-44686 | Msa1405450:intron | 20.0% |
| !! | TGGTTTAAACAATTATATGT+TGG | - | tig0023138:44808-44827 | None:intergenic | 20.0% |
| !! | TTGAAACTTAAAGTAGAATA+TGG | - | tig0023138:45159-45178 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTTAAGCAAA+AGG | + | tig0023138:45634-45653 | Msa1405450:intron | 20.0% |
| !! | ATGTTTAAATACAAGTAGTT+TGG | + | tig0023138:46064-46083 | Msa1405450:intron | 20.0% |
| !! | AAAAATAAACAACTATTGGA+TGG | - | tig0023138:46090-46109 | None:intergenic | 20.0% |
| !!! | TTAAAATGTTTTAACTTAGC+AGG | + | tig0023138:46496-46515 | Msa1405450:intron | 20.0% |
| !! | AGTATAAAAGATATGTCAAA+TGG | + | tig0023138:46953-46972 | Msa1405450:CDS | 20.0% |
| ! | AACAAAACAACCTCAAAAAA+TGG | + | tig0023138:43160-43179 | Msa1405450:exon | 25.0% |
| ! | GTCAAAAACCAACAAAAAAA+AGG | - | tig0023138:43419-43438 | None:intergenic | 25.0% |
| ! | TCATCTTCTCAAATTATTAC+CGG | - | tig0023138:43689-43708 | None:intergenic | 25.0% |
| ! | TGATTCAAAGGTGAATTTAA+TGG | + | tig0023138:43951-43970 | Msa1405450:intron | 25.0% |
| ! | TAGGTATGTTAAAAATCTCA+TGG | + | tig0023138:44132-44151 | Msa1405450:intron | 25.0% |
| ! | AGGTATGTTAAAAATCTCAT+GGG | + | tig0023138:44133-44152 | Msa1405450:intron | 25.0% |
| ! | TATTATAACGAGATACATAC+AGG | - | tig0023138:44733-44752 | None:intergenic | 25.0% |
| !! | AATACTTTTGTTCAACAATG+TGG | + | tig0023138:44859-44878 | Msa1405450:intron | 25.0% |
| ! | TATAAGGAAATAGTTACTTG+TGG | - | tig0023138:44897-44916 | None:intergenic | 25.0% |
| !!! | TAAATCACATCTTTGGAATT+TGG | - | tig0023138:44941-44960 | None:intergenic | 25.0% |
| ! | GGAAGTCATATTATTTACAT+CGG | + | tig0023138:45053-45072 | Msa1405450:CDS | 25.0% |
| ! | TTAGTCAATCAAAGTAACAA+TGG | - | tig0023138:45128-45147 | None:intergenic | 25.0% |
| !!! | TCGAGTGTATTTTTAAACAA+AGG | + | tig0023138:45319-45338 | Msa1405450:CDS | 25.0% |
| ! | AAGTATATTATACTTGCAAC+TGG | - | tig0023138:46164-46183 | None:intergenic | 25.0% |
| ! | AGTTGCAAGTATAATATACT+TGG | + | tig0023138:46163-46182 | Msa1405450:intron | 25.0% |
| !!! | CGTGAATTTTTTCAATAACT+TGG | - | tig0023138:46270-46289 | None:intergenic | 25.0% |
| !! | ATTTTCATTCCATGTTACAA+AGG | + | tig0023138:46604-46623 | Msa1405450:CDS | 25.0% |
| !! | TTGTTGATTGCAAAAACAAT+TGG | - | tig0023138:46681-46700 | None:intergenic | 25.0% |
| ! | TTACATAAGATACTACTGAA+GGG | - | tig0023138:47014-47033 | None:intergenic | 25.0% |
| ! | ATTACATAAGATACTACTGA+AGG | - | tig0023138:47015-47034 | None:intergenic | 25.0% |
| ! | TTAGATGGTTTAGACAAAAA+GGG | - | tig0023138:47128-47147 | None:intergenic | 25.0% |
| ! | ATTAGATGGTTTAGACAAAA+AGG | - | tig0023138:47129-47148 | None:intergenic | 25.0% |
| !!! | CCTCTAAAAATGTTCTTTTT+AGG | - | tig0023138:47164-47183 | None:intergenic | 25.0% |
| !!! | CCTAAAAAGAACATTTTTAG+AGG | + | tig0023138:47161-47180 | Msa1405450:three_prime_UTR | 25.0% |
| ! | AACCTATGTATATAACCATA+AGG | + | tig0023138:47195-47214 | Msa1405450:three_prime_UTR | 25.0% |
| ! | ACCTATGTATATAACCATAA+GGG | + | tig0023138:47196-47215 | Msa1405450:three_prime_UTR | 25.0% |
| ! | TGTTAATATATCCTTGTAGT+TGG | + | tig0023138:47219-47238 | Msa1405450:three_prime_UTR | 25.0% |
| !!! | TAGTGATGAACCATTTTTTG+AGG | - | tig0023138:43173-43192 | None:intergenic | 30.0% |
| ! | ATGTTGATGAGATGAAATTG+AGG | - | tig0023138:43246-43265 | None:intergenic | 30.0% |
| TCTTAGATTGATGAACTTTC+TGG | + | tig0023138:43463-43482 | Msa1405450:intron | 30.0% | |
| !!! | ATAAAGATGTTTTAGCTCGA+AGG | + | tig0023138:43533-43552 | Msa1405450:CDS | 30.0% |
| !!! | GGATATTTTTTTAGTTGGCT+TGG | + | tig0023138:43608-43627 | Msa1405450:intron | 30.0% |
| GTAATCAGTATCACATATGT+CGG | + | tig0023138:43720-43739 | Msa1405450:intron | 30.0% | |
| GTGAATTTAATGGTGCAAAA+AGG | + | tig0023138:43961-43980 | Msa1405450:intron | 30.0% | |
| ! | CAATCAACTTATCATTGACT+CGG | + | tig0023138:44253-44272 | Msa1405450:intron | 30.0% |
| ! | TATATAGCTTTACCTTTGCT+TGG | + | tig0023138:44346-44365 | Msa1405450:intron | 30.0% |
| ! | GAAAATATGATGGAGTTGTT+GGG | + | tig0023138:44446-44465 | Msa1405450:CDS | 30.0% |
| ! | AAAATATGATGGAGTTGTTG+GGG | + | tig0023138:44447-44466 | Msa1405450:CDS | 30.0% |
| !! | AAACCTTTTCAAGACATTGA+TGG | - | tig0023138:44491-44510 | None:intergenic | 30.0% |
| !!! | CAGGTTTTTTCATTTTCACT+TGG | - | tig0023138:44714-44733 | None:intergenic | 30.0% |
| GTATTGCATCGTTCATAAAA+TGG | - | tig0023138:44828-44847 | None:intergenic | 30.0% | |
| ATCTGTGTAAATCACATCTT+TGG | - | tig0023138:44948-44967 | None:intergenic | 30.0% | |
| AGATCAATCATTATCCACTT+AGG | + | tig0023138:44964-44983 | Msa1405450:intron | 30.0% | |
| TTTCAAACCTAAAAGATCGT+TGG | + | tig0023138:45032-45051 | Msa1405450:CDS | 30.0% | |
| TAGAATTGCACATAGAACAA+GGG | + | tig0023138:45359-45378 | Msa1405450:CDS | 30.0% | |
| TTAAACATTGTAAGAATGCC+AGG | - | tig0023138:46052-46071 | None:intergenic | 30.0% | |
| GAAATATTAGTCAGTAGAGA+GGG | - | tig0023138:46142-46161 | None:intergenic | 30.0% | |
| ATTAGAATAACTAAAACCCG+AGG | + | tig0023138:46298-46317 | Msa1405450:CDS | 30.0% | |
| TGAGTTTCATATCATCAATC+AGG | + | tig0023138:46333-46352 | Msa1405450:CDS | 30.0% | |
| CATAAACAAAGAGTCATGAT+AGG | - | tig0023138:46452-46471 | None:intergenic | 30.0% | |
| ! | CTATCATGACTCTTTGTTTA+TGG | + | tig0023138:46450-46469 | Msa1405450:CDS | 30.0% |
| ATGTACGTTATGTAATTGCA+GGG | + | tig0023138:46564-46583 | Msa1405450:intron | 30.0% | |
| CAGTAAATACCTTTGTAACA+TGG | - | tig0023138:46616-46635 | None:intergenic | 30.0% | |
| GTTGAATGTAATAACATGTG+CGG | - | tig0023138:46740-46759 | None:intergenic | 30.0% | |
| AGTGTTAGATAGAGTTGAAT+AGG | + | tig0023138:46819-46838 | Msa1405450:intron | 30.0% | |
| TTTATACTAGCAAACTCTTC+AGG | - | tig0023138:46941-46960 | None:intergenic | 30.0% | |
| ! | GTCAAATGGTGTAAAAGTAT+TGG | + | tig0023138:46967-46986 | Msa1405450:CDS | 30.0% |
| ACCCTTATGGTTATATACAT+AGG | - | tig0023138:47200-47219 | None:intergenic | 30.0% | |
| AGGATATATTAACACCCTTA+TGG | - | tig0023138:47213-47232 | None:intergenic | 30.0% | |
| ! | TCAACCATGGAACAATTTTC+CGG | + | tig0023138:43296-43315 | Msa1405450:CDS | 35.0% |
| GATAGTGAAGAGAATGAAGT+GGG | - | tig0023138:43338-43357 | None:intergenic | 35.0% | |
| TTTATCAGTGTACAAAACCC+TGG | - | tig0023138:43518-43537 | None:intergenic | 35.0% | |
| AAGTGTGTACCTATGAAGTA+CGG | + | tig0023138:43641-43660 | Msa1405450:intron | 35.0% | |
| ! | CTTCTAATAGAAAGTGTGTC+TGG | - | tig0023138:43771-43790 | None:intergenic | 35.0% |
| TGTACAATCACTACAATTCC+AGG | + | tig0023138:43825-43844 | Msa1405450:intron | 35.0% | |
| TAGTCTATTCAAGAACTACC+TGG | - | tig0023138:43846-43865 | None:intergenic | 35.0% | |
| !! | ATAGTACTTCGCTGATTCAA+AGG | + | tig0023138:43939-43958 | Msa1405450:intron | 35.0% |
| GGTAAACATCTCACATTCTA+AGG | - | tig0023138:44082-44101 | None:intergenic | 35.0% | |
| !!! | TACTCTTGTTTTGCATCTGT+AGG | + | tig0023138:44113-44132 | Msa1405450:intron | 35.0% |
| AAAAATCTCATGGGAATTGC+TGG | + | tig0023138:44142-44161 | Msa1405450:CDS | 35.0% | |
| !! | GATGCTGTTGGTAACATATT+TGG | + | tig0023138:44181-44200 | Msa1405450:CDS | 35.0% |
| ! | TTGGTAACATATTTGGTCGT+TGG | + | tig0023138:44188-44207 | Msa1405450:CDS | 35.0% |
| !! | CGAGTCAATGATAAGTTGAT+TGG | - | tig0023138:44255-44274 | None:intergenic | 35.0% |
| AATCTTCCCTCTATTAGCTA+CGG | + | tig0023138:44300-44319 | Msa1405450:intron | 35.0% | |
| TACCTTTGCTTGGTTTATGT+AGG | + | tig0023138:44356-44375 | Msa1405450:intron | 35.0% | |
| ACCTTTGCTTGGTTTATGTA+GGG | + | tig0023138:44357-44376 | Msa1405450:intron | 35.0% | |
| ! | GGAAAATATGATGGAGTTGT+TGG | + | tig0023138:44445-44464 | Msa1405450:CDS | 35.0% |
| AAGCCATCAATGTCTTGAAA+AGG | + | tig0023138:44485-44504 | Msa1405450:CDS | 35.0% | |
| CAGCATCTTGAATCTTACTA+CGG | + | tig0023138:44614-44633 | Msa1405450:intron | 35.0% | |
| CTCGCTGCAAATTATTTCAA+AGG | + | tig0023138:44657-44676 | Msa1405450:intron | 35.0% | |
| ! | ATGACTTCCAACGATCTTTT+AGG | - | tig0023138:45042-45061 | None:intergenic | 35.0% |
| TTGGAATAAGTTGCTTAGGA+AGG | + | tig0023138:45091-45110 | Msa1405450:CDS | 35.0% | |
| ! | CATCTAAGAAGGATACGTTT+TGG | - | tig0023138:45258-45277 | None:intergenic | 35.0% |
| GTAGAATTGCACATAGAACA+AGG | + | tig0023138:45358-45377 | Msa1405450:CDS | 35.0% | |
| AGTCTAAGGGTTGAATTTGA+AGG | + | tig0023138:45523-45542 | Msa1405450:CDS | 35.0% | |
| GCTCTTGATTAATCAAATCG+AGG | - | tig0023138:45908-45927 | None:intergenic | 35.0% | |
| !! | TTTCTATGTGCGATTTGCTA+GGG | - | tig0023138:45996-46015 | None:intergenic | 35.0% |
| ! | ATTTCTATGTGCGATTTGCT+AGG | - | tig0023138:45997-46016 | None:intergenic | 35.0% |
| AGCAAATCGCACATAGAAAT+TGG | + | tig0023138:45997-46016 | Msa1405450:CDS | 35.0% | |
| GGAAATATTAGTCAGTAGAG+AGG | - | tig0023138:46143-46162 | None:intergenic | 35.0% | |
| AGATACTAGAGACATTGATG+AGG | + | tig0023138:46234-46253 | Msa1405450:intron | 35.0% | |
| TAGCAGGAAATATTACACAG+TGG | + | tig0023138:46512-46531 | Msa1405450:intron | 35.0% | |
| CATGTACGTTATGTAATTGC+AGG | + | tig0023138:46563-46582 | Msa1405450:intron | 35.0% | |
| ATACTACTGAAGGGACAATT+TGG | - | tig0023138:47005-47024 | None:intergenic | 35.0% | |
| ! | GGCACATTTTTCACATTAGA+TGG | - | tig0023138:47143-47162 | None:intergenic | 35.0% |
| CCATGGTTGAGATGATTGAA+GGG | - | tig0023138:43286-43305 | None:intergenic | 40.0% | |
| TCCATGGTTGAGATGATTGA+AGG | - | tig0023138:43287-43306 | None:intergenic | 40.0% | |
| GTAACCGGAAAATTGTTCCA+TGG | - | tig0023138:43303-43322 | None:intergenic | 40.0% | |
| GGGTTCAAGAATTGAGTAAC+CGG | - | tig0023138:43318-43337 | None:intergenic | 40.0% | |
| GGATAGTGAAGAGAATGAAG+TGG | - | tig0023138:43339-43358 | None:intergenic | 40.0% | |
| ATGATTGAGTGTACTGTACC+TGG | - | tig0023138:43385-43404 | None:intergenic | 40.0% | |
| TACAAAACCCTGGTTACTGA+TGG | - | tig0023138:43508-43527 | None:intergenic | 40.0% | |
| CAACACTGACACATTTGTAC+CGG | + | tig0023138:43667-43686 | Msa1405450:intron | 40.0% | |
| AGTATCACATATGTCGGTGT+CGG | + | tig0023138:43726-43745 | Msa1405450:intron | 40.0% | |
| AGTACAAGAAGAGTGGCATA+TGG | + | tig0023138:43799-43818 | Msa1405450:intron | 40.0% | |
| AATGGTGCAAAAAGGATGTG+CGG | + | tig0023138:43969-43988 | Msa1405450:intron | 40.0% | |
| ATTCCTCAAAAGCTCTCTCT+GGG | + | tig0023138:44220-44239 | Msa1405450:intron | 40.0% | |
| GCTAAACCGTAGCTAATAGA+GGG | - | tig0023138:44309-44328 | None:intergenic | 40.0% | |
| CTCTATTAGCTACGGTTTAG+CGG | + | tig0023138:44308-44327 | Msa1405450:intron | 40.0% | |
| TCCCTACATAAACCAAGCAA+AGG | - | tig0023138:44361-44380 | None:intergenic | 40.0% | |
| TTGCTTGGTTTATGTAGGGA+TGG | + | tig0023138:44361-44380 | Msa1405450:intron | 40.0% | |
| !! | GTAAGGTATAGCATCGATGT+GGG | - | tig0023138:44422-44441 | None:intergenic | 40.0% |
| !! | AGTAAGGTATAGCATCGATG+TGG | - | tig0023138:44423-44442 | None:intergenic | 40.0% |
| CATCGATGCTATACCTTACT+CGG | + | tig0023138:44423-44442 | Msa1405450:CDS | 40.0% | |
| ATCGATGCTATACCTTACTC+GGG | + | tig0023138:44424-44443 | Msa1405450:CDS | 40.0% | |
| ! | CCATCATATTTTCCCGAGTA+AGG | - | tig0023138:44439-44458 | None:intergenic | 40.0% |
| CCTTACTCGGGAAAATATGA+TGG | + | tig0023138:44436-44455 | Msa1405450:CDS | 40.0% | |
| CAACTTATTCCAAAGCGTGT+GGG | - | tig0023138:45084-45103 | None:intergenic | 40.0% | |
| !! | CGCTTTGGAATAAGTTGCTT+AGG | + | tig0023138:45087-45106 | Msa1405450:CDS | 40.0% |
| TATCCTTCTTAGATGCTGCA+AGG | + | tig0023138:45263-45282 | Msa1405450:CDS | 40.0% | |
| CTCGACTCAGGTATATCTAT+AGG | + | tig0023138:45472-45491 | Msa1405450:intron | 40.0% | |
| AATTCAACCCTTAGACTTGC+AGG | - | tig0023138:45520-45539 | None:intergenic | 40.0% | |
| AGGGTTGAATTTGAAGGCAA+TGG | + | tig0023138:45529-45548 | Msa1405450:CDS | 40.0% | |
| GTTGAATTTGAAGGCAATGG+TGG | + | tig0023138:45532-45551 | Msa1405450:CDS | 40.0% | |
| AGAAACACGTCTTGGAATCT+GGG | + | tig0023138:45838-45857 | Msa1405450:CDS | 40.0% | |
| TAACTTACCAACAGTGCCAA+CGG | - | tig0023138:45874-45893 | None:intergenic | 40.0% | |
| ACGACAATTTGAGTCATACC+TGG | + | tig0023138:46031-46050 | Msa1405450:intron | 40.0% | |
| TATCATCAATCAGGATCCAC+CGG | + | tig0023138:46342-46361 | Msa1405450:CDS | 40.0% | |
| ! | ATGACTCTTTGTTTATGGCC+AGG | + | tig0023138:46455-46474 | Msa1405450:CDS | 40.0% |
| CTTATCTTCCTGCAAATACC+TGG | - | tig0023138:46476-46495 | None:intergenic | 40.0% | |
| GGAATGAAAATCATGCCCAT+TGG | - | tig0023138:46595-46614 | None:intergenic | 40.0% | |
| CAACTCTATCTAACACTGAC+AGG | - | tig0023138:46816-46835 | None:intergenic | 40.0% | |
| TAGCAAACTCTTCAGGCTTA+TGG | - | tig0023138:46934-46953 | None:intergenic | 40.0% | |
| !! | CTTGTGTTGACTATCATTGC+AGG | + | tig0023138:47037-47056 | Msa1405450:three_prime_UTR | 40.0% |
| TTGACTATCATTGCAGGACA+AGG | + | tig0023138:47043-47062 | Msa1405450:three_prime_UTR | 40.0% | |
| CCCTTCAATCATCTCAACCA+TGG | + | tig0023138:43283-43302 | Msa1405450:CDS | 45.0% | |
| TTGCAGAGTCTGAGCATCAT+AGG | - | tig0023138:43360-43379 | None:intergenic | 45.0% | |
| GTGTTGTGTCCGTACTTCAT+AGG | - | tig0023138:43653-43672 | None:intergenic | 45.0% | |
| GACAGTGAGTACAAGAAGAG+TGG | + | tig0023138:43792-43811 | Msa1405450:intron | 45.0% | |
| ATGGTGCAAAAAGGATGTGC+GGG | + | tig0023138:43970-43989 | Msa1405450:intron | 45.0% | |
| ! | TGCTGGTCTATCTGTAAGAG+AGG | + | tig0023138:44159-44178 | Msa1405450:CDS | 45.0% |
| TCTGTAAGAGAGGATGCTGT+TGG | + | tig0023138:44169-44188 | Msa1405450:CDS | 45.0% | |
| CATTCCTCAAAAGCTCTCTC+TGG | + | tig0023138:44219-44238 | Msa1405450:intron | 45.0% | |
| CGCTAAACCGTAGCTAATAG+AGG | - | tig0023138:44310-44329 | None:intergenic | 45.0% | |
| ! | GATGGAGTTGTTGGGGTTTT+AGG | + | tig0023138:44454-44473 | Msa1405450:CDS | 45.0% |
| GAGACTATCAGAACGGTGAA+AGG | - | tig0023138:44640-44659 | None:intergenic | 45.0% | |
| TTGCAGCGAGACTATCAGAA+CGG | - | tig0023138:44647-44666 | None:intergenic | 45.0% | |
| AACGTTGCTACTCACCTAAG+TGG | - | tig0023138:44981-45000 | None:intergenic | 45.0% | |
| CTGTGAAGGCTTAGTCAGTA+TGG | - | tig0023138:45006-45025 | None:intergenic | 45.0% | |
| ! | CATACTGACTAAGCCTTCAC+AGG | + | tig0023138:45004-45023 | Msa1405450:intron | 45.0% |
| ! | GTTTGAAACCAGACCTGTGA+AGG | - | tig0023138:45020-45039 | None:intergenic | 45.0% |
| GCAACTTATTCCAAAGCGTG+TGG | - | tig0023138:45085-45104 | None:intergenic | 45.0% | |
| AGACCTTGCAGCATCTAAGA+AGG | - | tig0023138:45269-45288 | None:intergenic | 45.0% | |
| CATAGAACAAGGGCCTATTC+TGG | + | tig0023138:45369-45388 | Msa1405450:CDS | 45.0% | |
| ! | CGTCATTTGTTTCTCGACTC+AGG | + | tig0023138:45460-45479 | Msa1405450:intron | 45.0% |
| AAAGATAGCAGCCACCTGTT+AGG | - | tig0023138:45580-45599 | None:intergenic | 45.0% | |
| ACATGGAGCAGAAATGATGC+TGG | + | tig0023138:45783-45802 | Msa1405450:intron | 45.0% | |
| GAGAAACACGTCTTGGAATC+TGG | + | tig0023138:45837-45856 | Msa1405450:CDS | 45.0% | |
| GACGACTGCTTCATCAGATA+GGG | - | tig0023138:46368-46387 | None:intergenic | 45.0% | |
| TGACGACTGCTTCATCAGAT+AGG | - | tig0023138:46369-46388 | None:intergenic | 45.0% | |
| GTTTATGGCCAGGTATTTGC+AGG | + | tig0023138:46465-46484 | Msa1405450:intron | 45.0% | |
| ! | TAATTGCAGGGTGTCTCCAA+TGG | + | tig0023138:46576-46595 | Msa1405450:intron | 45.0% |
| ! | AATTGCAGGGTGTCTCCAAT+GGG | + | tig0023138:46577-46596 | Msa1405450:intron | 45.0% |
| ! | TGTGCGGTTTTTGTCTGTGT+CGG | - | tig0023138:46724-46743 | None:intergenic | 45.0% |
| TATCATCGTTGCCACATGTC+TGG | + | tig0023138:46782-46801 | Msa1405450:intron | 45.0% | |
| CTGAAGGGACAATTTGGCTA+AGG | - | tig0023138:46999-47018 | None:intergenic | 45.0% | |
| ! | CACTGTTGATGAGTAGCGAG+TGG | + | tig0023138:43106-43125 | Msa1405450:five_prime_UTR | 50.0% |
| TGCTCAGACTCTGCAAAACC+AGG | + | tig0023138:43364-43383 | Msa1405450:CDS | 50.0% | |
| ACCTGCTCCATCAGTAACCA+GGG | + | tig0023138:43498-43517 | Msa1405450:CDS | 50.0% | |
| ! | GATCCCAGAGAGAGCTTTTG+AGG | - | tig0023138:44226-44245 | None:intergenic | 50.0% |
| TGACTAAGCCTTCACAGGTC+TGG | + | tig0023138:45009-45028 | Msa1405450:intron | 50.0% | |
| TGCTTTGTGCAGCCGCTTAT+TGG | + | tig0023138:45186-45205 | Msa1405450:intron | 50.0% | |
| TCTCACTCCCAGCCAATAAG+CGG | - | tig0023138:45201-45220 | None:intergenic | 50.0% | |
| TTAGATGCTGCAAGGTCTGC+TGG | + | tig0023138:45271-45290 | Msa1405450:CDS | 50.0% | |
| AGAACAAGGGCCTATTCTGG+AGG | + | tig0023138:45372-45391 | Msa1405450:CDS | 50.0% | |
| GTACCTTCGTCCTCCAGAAT+AGG | - | tig0023138:45385-45404 | None:intergenic | 50.0% | |
| TAGACTTGCAGGAGCTGCAA+TGG | - | tig0023138:45509-45528 | None:intergenic | 50.0% | |
| TTGCAGCTCCTGCAAGTCTA+AGG | + | tig0023138:45509-45528 | Msa1405450:CDS | 50.0% | |
| TGCAGCTCCTGCAAGTCTAA+GGG | + | tig0023138:45510-45529 | Msa1405450:CDS | 50.0% | |
| CCACCTGTTAGGCATAAGGA+CGG | - | tig0023138:45569-45588 | None:intergenic | 50.0% | |
| GAGCAGAAATGATGCTGGTC+TGG | + | tig0023138:45788-45807 | Msa1405450:intron | 50.0% | |
| AACTGCCAGGGCTAATTCAG+CGG | - | tig0023138:45817-45836 | None:intergenic | 50.0% | |
| GACGTGTTTCTCAACTGCCA+GGG | - | tig0023138:45829-45848 | None:intergenic | 50.0% | |
| AGACGTGTTTCTCAACTGCC+AGG | - | tig0023138:45830-45849 | None:intergenic | 50.0% | |
| GGCAGTTGAGAAACACGTCT+TGG | + | tig0023138:45830-45849 | Msa1405450:CDS | 50.0% | |
| TCTGGGTCTGTTGATACCGT+TGG | + | tig0023138:45855-45874 | Msa1405450:CDS | 50.0% | |
| GTTGATACCGTTGGCACTGT+TGG | + | tig0023138:45864-45883 | Msa1405450:CDS | 50.0% | |
| ! | GGGATGCTATTGATTGCTCC+AGG | - | tig0023138:45976-45995 | None:intergenic | 50.0% |
| ACTCAGTGAGCTTGACACCT+CGG | - | tig0023138:46318-46337 | None:intergenic | 50.0% | |
| ACTGCTTCATCAGATAGGGC+CGG | - | tig0023138:46364-46383 | None:intergenic | 50.0% | |
| CGTTGCCACATGTCTGGTAT+TGG | + | tig0023138:46788-46807 | Msa1405450:intron | 50.0% | |
| AGGCACCAATACCAGACATG+TGG | - | tig0023138:46796-46815 | None:intergenic | 50.0% | |
| CACCTGCTCCATCAGTAACC+AGG | + | tig0023138:43497-43516 | Msa1405450:CDS | 55.0% | |
| ACCCTGGTTACTGATGGAGC+AGG | - | tig0023138:43502-43521 | None:intergenic | 55.0% | |
| TGTAGGGATGGCAGTGAACC+CGG | + | tig0023138:44373-44392 | Msa1405450:intron | 55.0% | |
| TGTTGCAACTGCAGCAAGCC+CGG | - | tig0023138:44395-44414 | None:intergenic | 55.0% | |
| TCGGAAGAACCCACACGCTT+TGG | + | tig0023138:45072-45091 | Msa1405450:CDS | 55.0% | |
| TTGTGCAGCCGCTTATTGGC+TGG | + | tig0023138:45190-45209 | Msa1405450:intron | 55.0% | |
| ! | TGTGCAGCCGCTTATTGGCT+GGG | + | tig0023138:45191-45210 | Msa1405450:intron | 55.0% |
| GTGCCGTCCTTATGCCTAAC+AGG | + | tig0023138:45563-45582 | Msa1405450:CDS | 55.0% | |
| CCGTCCTTATGCCTAACAGG+TGG | + | tig0023138:45566-45585 | Msa1405450:intron | 55.0% | |
| GCAGCCACCTGTTAGGCATA+AGG | - | tig0023138:45573-45592 | None:intergenic | 55.0% | |
| GGTATCCTGCAACTGCATCC+TGG | + | tig0023138:45955-45974 | Msa1405450:intron | 55.0% | |
| TTGCTCCAGGATGCAGTTGC+AGG | - | tig0023138:45963-45982 | None:intergenic | 55.0% | |
| CTCAGTGAGCTTGACACCTC+GGG | - | tig0023138:46317-46336 | None:intergenic | 55.0% | |
| TGAAGCAGTCGTCAACGCAG+TGG | + | tig0023138:46375-46394 | Msa1405450:CDS | 55.0% | |
| !! | GTGTCGGCACTGACACACGT+CGG | + | tig0023138:43742-43761 | Msa1405450:intron | 60.0% |
| GTAGGGATGGCAGTGAACCC+GGG | + | tig0023138:44374-44393 | Msa1405450:intron | 60.0% | |
| GTTGCAACTGCAGCAAGCCC+GGG | - | tig0023138:44394-44413 | None:intergenic | 60.0% | |
| !! | GGGCTTGCTGCAGTTGCAAC+AGG | + | tig0023138:44394-44413 | Msa1405450:CDS | 60.0% |
| ! | GGGCCTATTCTGGAGGACGA+AGG | + | tig0023138:45379-45398 | Msa1405450:CDS | 60.0% |
| GAAGGCAATGGTGGCCATGC+AGG | + | tig0023138:45541-45560 | Msa1405450:CDS | 60.0% | |
| GCATAAGGACGGCACCTGCA+TGG | - | tig0023138:45558-45577 | None:intergenic | 60.0% | |
| GCTTCATCAGATAGGGCCGG+TGG | - | tig0023138:46361-46380 | None:intergenic | 60.0% | |
| ! | CTTGTCGTCGTCGCTTTCGC+AGG | + | tig0023138:46902-46921 | Msa1405450:intron | 60.0% |
| GGCAGCCGCTGAATTAGCCC+TGG | + | tig0023138:45809-45828 | Msa1405450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023138 | gene | 43105 | 47245 | 43105 | ID=Msa1405450;Name=Msa1405450 |
| tig0023138 | mRNA | 43105 | 47245 | 43105 | ID=Msa1405450-mRNA-1;Parent=Msa1405450;Name=Msa1405450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=74|1|1|1|0.63|0.83|12|224|474 |
| tig0023138 | exon | 43105 | 43385 | 43105 | ID=Msa1405450-mRNA-1:exon:24083;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 43469 | 43554 | 43469 | ID=Msa1405450-mRNA-1:exon:24084;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 44135 | 44209 | 44135 | ID=Msa1405450-mRNA-1:exon:24085;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 44378 | 44506 | 44378 | ID=Msa1405450-mRNA-1:exon:24086;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 45026 | 45112 | 45026 | ID=Msa1405450-mRNA-1:exon:24087;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 45198 | 45400 | 45198 | ID=Msa1405450-mRNA-1:exon:24088;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 45482 | 45584 | 45482 | ID=Msa1405450-mRNA-1:exon:24089;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 45794 | 45885 | 45794 | ID=Msa1405450-mRNA-1:exon:24090;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 45956 | 46018 | 45956 | ID=Msa1405450-mRNA-1:exon:24091;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 46236 | 46476 | 46236 | ID=Msa1405450-mRNA-1:exon:24092;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 46585 | 46625 | 46585 | ID=Msa1405450-mRNA-1:exon:24093;Parent=Msa1405450-mRNA-1 |
| tig0023138 | exon | 46924 | 47245 | 46924 | ID=Msa1405450-mRNA-1:exon:24094;Parent=Msa1405450-mRNA-1 |
| tig0023138 | five_prime_UTR | 43105 | 43178 | 43105 | ID=Msa1405450-mRNA-1:five_prime_utr;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 43179 | 43385 | 43179 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 43469 | 43554 | 43469 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 44135 | 44209 | 44135 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 44378 | 44506 | 44378 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 45026 | 45112 | 45026 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 45198 | 45400 | 45198 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 45482 | 45584 | 45482 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 45794 | 45885 | 45794 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 45956 | 46018 | 45956 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 46236 | 46476 | 46236 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 46585 | 46625 | 46585 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | CDS | 46924 | 47021 | 46924 | ID=Msa1405450-mRNA-1:cds;Parent=Msa1405450-mRNA-1 |
| tig0023138 | three_prime_UTR | 47022 | 47245 | 47022 | ID=Msa1405450-mRNA-1:three_prime_utr;Parent=Msa1405450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
