AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576020 MtrunA17_Chr8g0393311 98.196 388 7 0 1 388 1 388 0.0 786
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576020 AT1G48420.1 72.559 379 104 0 10 388 23 401 0.0 571
Msa0576020 AT1G48420.2 72.559 379 104 0 10 388 23 401 0.0 571
Msa0576020 AT1G48420.3 72.559 379 104 0 10 388 23 401 0.0 571
Msa0576020 AT3G26115.3 22.849 337 203 11 62 356 8 329 4.39e-11 64.3
Msa0576020 AT3G26115.2 22.849 337 203 11 62 356 8 329 4.39e-11 64.3
Msa0576020 AT3G26115.1 22.849 337 203 11 62 356 91 412 4.49e-11 64.7

Find 140 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATTTAAATCATATTTA+TGG 0.095345 4_1:+80042761 None:intergenic
TTCCTTCCTTCCCATTTCTT+TGG 0.168403 4_1:+80043145 None:intergenic
CTGAAGCGCGACGATCTTTC+TGG 0.194591 4_1:-80049603 Msa0576020:CDS
AATTTGTGAATATTCTTCTT+TGG 0.263261 4_1:+80049323 None:intergenic
AGACATAAATGCAAACAATA+AGG 0.291586 4_1:+80042967 None:intergenic
CTAAATGCCACTGTCGAAAA+AGG 0.294483 4_1:-80049867 Msa0576020:five_prime_UTR
AAAGAAGAATATTCACAAAT+TGG 0.296772 4_1:-80049321 Msa0576020:CDS
TTATGAGAATTGATGTAATA+AGG 0.298430 4_1:+80042827 None:intergenic
GTACATACAGGTGGCCTCTT+AGG 0.303821 4_1:-80043112 Msa0576020:CDS
TGGGTTCCTTTGTGGGGAAT+TGG 0.314828 4_1:-80043066 Msa0576020:CDS
GCTGATTCTGTTATTACAAT+TGG 0.315186 4_1:-80049513 Msa0576020:CDS
CTAATTTAAATCATATTTAT+GGG 0.316825 4_1:+80042762 None:intergenic
GCTTAGAAGTGCGGAGTATA+AGG 0.324616 4_1:+80049424 None:intergenic
TGGAAACAAAGTGCGGAAAT+TGG 0.338825 4_1:-80049568 Msa0576020:CDS
CACAATTGCCGGTTTAGCAC+TGG 0.344641 4_1:-80045281 Msa0576020:CDS
CTTCTTGTTGAGCGTTTGAT+TGG 0.348706 4_1:-80049366 Msa0576020:CDS
GGGGCTACATAGAGGCAGTT+AGG 0.350018 4_1:-80045728 Msa0576020:CDS
AGCCACACTTCTGTATTTGC+TGG 0.350872 4_1:+80049624 None:intergenic
GATCAGCTGGGTTCCTTTGT+GGG 0.353254 4_1:-80043073 Msa0576020:CDS
TGAATGAAAATCCAAAGAAA+TGG 0.354272 4_1:-80043156 Msa0576020:CDS
CTTTCCAATTCCATCTTGCC+TGG 0.356939 4_1:+80043015 None:intergenic
AGGAAAATGGCGAAAGATAA+AGG 0.357795 4_1:-80049847 Msa0576020:five_prime_UTR
CGATCAGCTGGGTTCCTTTG+TGG 0.368488 4_1:-80043074 Msa0576020:CDS
TAAATTAGAGATTTAATCCT+AGG 0.373773 4_1:-80042747 Msa0576020:three_prime_UTR
TGCTTACAGGCCAAGGGTCT+TGG 0.379002 4_1:-80044793 Msa0576020:intron
AGATTGAGACTTAAACCTTC+AGG 0.397047 4_1:+80042686 None:intergenic
TGCCAGTGAGGGTGGGATCT+TGG 0.400276 4_1:+80049391 None:intergenic
GTTCCCAGGCAAGATGGAAT+TGG 0.402849 4_1:-80043019 Msa0576020:CDS
GCGGAAATTGGAGTTCTTGA+TGG 0.407020 4_1:-80049556 Msa0576020:CDS
TCTGTATTTGCTGGCAGGTT+CGG 0.409436 4_1:+80049633 None:intergenic
ACAAAGTTGTGGAAGTAATC+CGG 0.413991 4_1:+80045126 None:intergenic
GACATAAATGCAAACAATAA+GGG 0.416132 4_1:+80042968 None:intergenic
TGATGAACCCAGTGCTAAAC+CGG 0.425541 4_1:+80045273 None:intergenic
TACTTCCACAACTTTGTTCA+AGG 0.425604 4_1:-80045120 Msa0576020:CDS
TATGAGAAGGTATGGGGTCT+AGG 0.430799 4_1:+80049703 None:intergenic
GTTCTTTCTCTTTCACCTGA+AGG 0.443293 4_1:-80042701 Msa0576020:three_prime_UTR
AGATACAATATGAGAAGGTA+TGG 0.444228 4_1:+80049695 None:intergenic
ATATTATTATTCTAACTGAA+TGG 0.446626 4_1:+80049946 None:intergenic
GGGCTACATAGAGGCAGTTA+GGG 0.449619 4_1:-80045727 Msa0576020:CDS
TAACATATGGCCTCCTCCCT+TGG 0.454510 4_1:+80049169 None:intergenic
CTTCTTTGGATATAAGTTGA+AGG 0.456772 4_1:+80049337 None:intergenic
ACAATTGCCGGTTTAGCACT+GGG 0.459037 4_1:-80045280 Msa0576020:CDS
AGAGAGTTTGATCCGCCAAC+AGG 0.462134 4_1:+80049144 None:intergenic
TTTGTTCAAGGCTTGCTTGA+CGG 0.462516 4_1:-80045108 Msa0576020:CDS
ACACTTCTGTATTTGCTGGC+AGG 0.463369 4_1:+80049628 None:intergenic
TGTGAATCGGAGTCGGAAGA+TGG 0.463540 4_1:+80049667 None:intergenic
TTGTTCTTGACCCGGTATAC+AGG 0.463568 4_1:-80044708 Msa0576020:intron
TCGAATAAATACCTGTATAC+CGG 0.463817 4_1:+80044697 None:intergenic
GTATGACAAGGTCGATCAGC+TGG 0.464943 4_1:-80043086 Msa0576020:CDS
AGCCATACACAGCTCCTTCA+TGG 0.465709 4_1:-80049734 Msa0576020:CDS
GAATGAAAATCCAAAGAAAT+GGG 0.478205 4_1:-80043155 Msa0576020:CDS
AGTTTATCATGTAAAATCCT+AGG 0.487547 4_1:+80042730 None:intergenic
GACCAAGATCCCACCCTCAC+TGG 0.487961 4_1:-80049393 Msa0576020:CDS
CCATATGTTATTCCTGTTGG+CGG 0.489575 4_1:-80049156 Msa0576020:CDS
AAAGAAGTTGCTGAAGCTAC+AGG 0.491243 4_1:-80044733 Msa0576020:CDS
GATTCTGTTATTACAATTGG+AGG 0.492732 4_1:-80049510 Msa0576020:CDS
TTCGACAGTGGCATTTAGGG+TGG 0.492916 4_1:+80049872 None:intergenic
AGAAGGTATGGGGTCTAGGT+AGG 0.496529 4_1:+80049707 None:intergenic
TTTATTCCTTCTCAGCGGTA+AGG 0.497920 4_1:-80043203 Msa0576020:intron
ATATTGTTGTGGCTTGTGGC+AGG 0.501044 4_1:-80045656 Msa0576020:intron
CCGCCAACAGGAATAACATA+TGG 0.503502 4_1:+80049156 None:intergenic
AAGATCCTCTTCGTACATAC+AGG 0.505875 4_1:-80043124 Msa0576020:CDS
CATTGCATAGCCAAGACCCT+TGG 0.507444 4_1:+80044783 None:intergenic
TCTCATACTATACATCCTCT+TGG 0.507451 4_1:+80042926 None:intergenic
AAATGGTACTTTGTCATGGT+GGG 0.511248 4_1:-80049911 Msa0576020:five_prime_UTR
AGGCCATATGTTATTCCTGT+TGG 0.513249 4_1:-80049159 Msa0576020:CDS
GCCCATGAAGGAGCTGTGTA+TGG 0.513916 4_1:+80049732 None:intergenic
GGAAGCTTCCATCTGTGAAT+CGG 0.515135 4_1:+80049654 None:intergenic
CAAGTCTCAACAGTGATGGC+GGG 0.516623 4_1:-80049777 Msa0576020:CDS
ATCCAAAGAAATGGGAAGGA+AGG 0.517188 4_1:-80043147 Msa0576020:CDS
ATATGGCCTCCTCCCTTGGT+TGG 0.518268 4_1:+80049173 None:intergenic
CAAAGTTGTGGAAGTAATCC+GGG 0.521477 4_1:+80045127 None:intergenic
AGCTCACCAACCAAGGGAGG+AGG 0.524864 4_1:-80049179 Msa0576020:CDS
GATACAATATGAGAAGGTAT+GGG 0.525600 4_1:+80049696 None:intergenic
GAATCTGTTCCCAGGCAAGA+TGG 0.526272 4_1:-80043025 Msa0576020:CDS
AAGAAGATTGCCAGTGAGGG+TGG 0.528089 4_1:+80049383 None:intergenic
CCTTGTCATACAATCCTAAG+AGG 0.528394 4_1:+80043098 None:intergenic
TTTCCAATTCCATCTTGCCT+GGG 0.529547 4_1:+80043016 None:intergenic
TTGCTTGACGGACTCAAAGC+TGG 0.530861 4_1:-80045096 Msa0576020:CDS
GTGGCATTTAGGGTGGGTAG+AGG 0.535782 4_1:+80049879 None:intergenic
CATTGAGTAGCTTGAAAGCA+AGG 0.540202 4_1:-80045252 Msa0576020:CDS
TTAGAATAATAATATATCAA+TGG 0.542776 4_1:-80049938 Msa0576020:five_prime_UTR
TGGCACGACAGTGATTACTT+TGG 0.547420 4_1:+80049484 None:intergenic
GATGATATTGTTGTGGCTTG+TGG 0.554768 4_1:-80045660 Msa0576020:CDS
GTGAATCGGAGTCGGAAGAT+GGG 0.555114 4_1:+80049668 None:intergenic
TTTATGGGAGTGATGATTGT+GGG 0.556296 4_1:+80042777 None:intergenic
ATTCTCCGTTTGTGATGACC+CGG 0.556941 4_1:-80045145 Msa0576020:CDS
GTAATCCGGGTCATCACAAA+CGG 0.557799 4_1:+80045140 None:intergenic
GATCAAACTCTCTCGGAACA+TGG 0.558246 4_1:-80049134 Msa0576020:intron
ATCAGCTGGGTTCCTTTGTG+GGG 0.558594 4_1:-80043072 Msa0576020:CDS
CTTTCTGGAATGCAATTGAG+TGG 0.561261 4_1:-80049588 Msa0576020:CDS
TGGCATTTAGGGTGGGTAGA+GGG 0.562729 4_1:+80049880 None:intergenic
CGAATAAATACCTGTATACC+GGG 0.563504 4_1:+80044698 None:intergenic
TGTAATTGTAATGAAATGTA+TGG 0.565127 4_1:-80049813 Msa0576020:exon
TCTACTCAGGGGCTACATAG+AGG 0.565560 4_1:-80045736 Msa0576020:intron
AACAAGAAGATTGCCAGTGA+GGG 0.566617 4_1:+80049380 None:intergenic
AAAGAAAAGCTCACCAACCA+AGG 0.567143 4_1:-80049186 Msa0576020:CDS
TACAGGTGTTGTTCTTGACC+CGG 0.568201 4_1:-80044716 Msa0576020:CDS
GCCATACACAGCTCCTTCAT+GGG 0.568763 4_1:-80049733 Msa0576020:CDS
TCGACAGTGGCATTTAGGGT+GGG 0.574529 4_1:+80049873 None:intergenic
TTCCATCTGTGAATCGGAGT+CGG 0.579716 4_1:+80049660 None:intergenic
AAAATGGTACTTTGTCATGG+TGG 0.580658 4_1:-80049912 Msa0576020:five_prime_UTR
GAAAATCCAAAGAAATGGGA+AGG 0.581955 4_1:-80043151 Msa0576020:CDS
TTCCGACTCCGATTCACAGA+TGG 0.583626 4_1:-80049662 Msa0576020:CDS
GCAAGTCTCAACAGTGATGG+CGG 0.587381 4_1:-80049778 Msa0576020:CDS
GCAAGCCTTGAACAAAGTTG+TGG 0.588520 4_1:+80045115 None:intergenic
AAAAGCTCACCAACCAAGGG+AGG 0.592499 4_1:-80049182 Msa0576020:CDS
TGTGGGGAATTGGCAACGAA+TGG 0.595485 4_1:-80043056 Msa0576020:CDS
GTTGGCGGATCAAACTCTCT+CGG 0.600283 4_1:-80049141 Msa0576020:CDS
TTTAACTGCTTACAGGCCAA+GGG 0.601343 4_1:-80044799 Msa0576020:intron
AGCGGATTCAGCAATTGCAT+CGG 0.601538 4_1:+80049533 None:intergenic
TCTAGGTAGGATGCCCATGA+AGG 0.602506 4_1:+80049720 None:intergenic
ATGTTAATGAATCTGTTCCC+AGG 0.603513 4_1:-80043033 Msa0576020:CDS
CAACAAGAAGATTGCCAGTG+AGG 0.606515 4_1:+80049379 None:intergenic
GAAGCAAGTCTCAACAGTGA+TGG 0.607865 4_1:-80049781 Msa0576020:CDS
AGAATTGATGTAATAAGGTG+AGG 0.614054 4_1:+80042832 None:intergenic
TAAATATATCTTGCTCCAAG+AGG 0.616763 4_1:-80042941 Msa0576020:three_prime_UTR
ATTTATGGGAGTGATGATTG+TGG 0.620301 4_1:+80042776 None:intergenic
CAAGTTTGATGATATTGTTG+TGG 0.625508 4_1:-80045667 Msa0576020:CDS
GCAAGAGATACAATATGAGA+AGG 0.625884 4_1:+80049690 None:intergenic
TATGACAAGGTCGATCAGCT+GGG 0.626866 4_1:-80043085 Msa0576020:CDS
AGGTGAAAGAGAAAGAACCT+AGG 0.627318 4_1:+80042706 None:intergenic
AGAAGATTGCCAGTGAGGGT+GGG 0.629815 4_1:+80049384 None:intergenic
CTATGCAATGAACACTTCTG+AGG 0.630985 4_1:-80044770 Msa0576020:CDS
AAGAAAAGCTCACCAACCAA+GGG 0.632393 4_1:-80049185 Msa0576020:CDS
ATACTTAGCAGCAACGGCAG+TGG 0.635268 4_1:+80049464 None:intergenic
ATTGAGTAGCTTGAAAGCAA+GGG 0.638253 4_1:-80045251 Msa0576020:intron
ATTGAGCTGCAGATTCAAAG+TGG 0.643773 4_1:-80045702 Msa0576020:CDS
ACTCAAATACTTAGCAGCAA+CGG 0.643840 4_1:+80049458 None:intergenic
CAACGAGATGCTTAGAAGTG+CGG 0.644777 4_1:+80049415 None:intergenic
ATCCTCTTCGTACATACAGG+TGG 0.648696 4_1:-80043121 Msa0576020:CDS
AATTGTAATAACAGAATCAG+CGG 0.651486 4_1:+80049515 None:intergenic
CCTCTTAGGATTGTATGACA+AGG 0.657121 4_1:-80043098 Msa0576020:CDS
GAAGTGCGGAGTATAAGGAA+AGG 0.661921 4_1:+80049429 None:intergenic
AAGTCTCAACAGTGATGGCG+GGG 0.666775 4_1:-80049776 Msa0576020:CDS
GGCCACCTGTATGTACGAAG+AGG 0.673188 4_1:+80043119 None:intergenic
TGCCAGCAAATACAGAAGTG+TGG 0.675881 4_1:-80049626 Msa0576020:CDS
ATACAATATGAGAAGGTATG+GGG 0.676303 4_1:+80049697 None:intergenic
TCGTTGCCAATTCCCCACAA+AGG 0.683550 4_1:+80043060 None:intergenic
AATTGAGTGGAAACAAAGTG+CGG 0.729797 4_1:-80049575 Msa0576020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAATAATAATATATCAA+TGG - chr4_1:80042599-80042618 Msa0576020:three_prime_UTR 10.0%
!! TAATATAAAAAATCAAGATT+TGG - chr4_1:80047069-80047088 Msa0576020:intron 10.0%
!!! TTATTATTTACATTTTGTTT+AGG + chr4_1:80048427-80048446 None:intergenic 10.0%
!!! TTTTTTTGACAAAAAATTAT+AGG - chr4_1:80048599-80048618 Msa0576020:intron 10.0%
!!! TAGCTTTTTTTTTTTTTTAA+AGG - chr4_1:80048641-80048660 Msa0576020:intron 10.0%
!!! TATTATATTTGTTATATTGT+TGG + chr4_1:80048882-80048901 None:intergenic 10.0%
!! CTAATTTAAATCATATTTAT+GGG + chr4_1:80049778-80049797 None:intergenic 10.0%
!! TCTAATTTAAATCATATTTA+TGG + chr4_1:80049779-80049798 None:intergenic 10.0%
!! AAAAAGAAAAAAAATAAAGA+AGG + chr4_1:80049927-80049946 None:intergenic 10.0%
!! ATATTATTATTCTAACTGAA+TGG + chr4_1:80042594-80042613 None:intergenic 15.0%
!! AATATATCAATGGTTAAAAA+TGG - chr4_1:80042609-80042628 Msa0576020:three_prime_UTR 15.0%
!! AATTGAGTAAAAACTTATAT+GGG + chr4_1:80043664-80043683 None:intergenic 15.0%
!! GCATTAAAAGATAAAATTTA+AGG + chr4_1:80044058-80044077 None:intergenic 15.0%
!! ATGTATTTGAAAATTATCAA+TGG + chr4_1:80045218-80045237 None:intergenic 15.0%
!!! TTTTCGAGTATAAAAATATT+AGG + chr4_1:80046435-80046454 None:intergenic 15.0%
!!! TATTTTTATACTCGAAAAAT+TGG - chr4_1:80046437-80046456 Msa0576020:intron 15.0%
!! TTCTTTGTATTTATTGTAAT+AGG + chr4_1:80046755-80046774 None:intergenic 15.0%
!! CAATAAAATATAAACATGTA+GGG + chr4_1:80048252-80048271 None:intergenic 15.0%
!! ACAATAAAATATAAACATGT+AGG + chr4_1:80048253-80048272 None:intergenic 15.0%
!! CAAAAGAATAAAATTATAGA+AGG - chr4_1:80048549-80048568 Msa0576020:intron 15.0%
!! AAAACACTAGTTAAAAATAA+TGG + chr4_1:80048674-80048693 None:intergenic 15.0%
!!! ATTATTTTTAACTAGTGTTT+TGG - chr4_1:80048673-80048692 Msa0576020:intron 15.0%
!! ATTTCATCTATAAAGAAAAT+AGG + chr4_1:80049007-80049026 None:intergenic 15.0%
!!! TATTTTTTTATAATAGCCAA+TGG + chr4_1:80049032-80049051 None:intergenic 15.0%
!! ACCATTAGATTAAAAATAAA+TGG - chr4_1:80049657-80049676 Msa0576020:CDS 15.0%
!!! ACCATTTATTTTTAATCTAA+TGG + chr4_1:80049661-80049680 None:intergenic 15.0%
!! TGTAATTGTAATGAAATGTA+TGG - chr4_1:80042724-80042743 Msa0576020:three_prime_UTR 20.0%
!! AATTTGTGAATATTCTTCTT+TGG + chr4_1:80043217-80043236 None:intergenic 20.0%
!! AAAGAAGAATATTCACAAAT+TGG - chr4_1:80043216-80043235 Msa0576020:intron 20.0%
!! AACAAGATAAAATTGAAAAG+AGG + chr4_1:80043561-80043580 None:intergenic 20.0%
!! CAATTGAGTAAAAACTTATA+TGG + chr4_1:80043665-80043684 None:intergenic 20.0%
!!! CACTTATCATTGTATTTTTT+AGG + chr4_1:80044354-80044373 None:intergenic 20.0%
!! ACAATTTGTAATTTGAATGA+AGG - chr4_1:80044455-80044474 Msa0576020:intron 20.0%
!! ATACCATAATAATGAATACT+TGG - chr4_1:80044529-80044548 Msa0576020:intron 20.0%
!! AGTGTAAAATACTTAAGTAT+GGG - chr4_1:80045012-80045031 Msa0576020:intron 20.0%
!!! ATATTTTTTCACATGATATC+AGG + chr4_1:80045859-80045878 None:intergenic 20.0%
!! TGATTTGAAAACGTAAATAA+TGG + chr4_1:80046146-80046165 None:intergenic 20.0%
!! GTATAAAAATATTAGGATGT+TGG + chr4_1:80046428-80046447 None:intergenic 20.0%
!! TGATTAAATTATTCTACTCA+GGG - chr4_1:80046789-80046808 Msa0576020:intron 20.0%
!!! CATAAAATCTGCATTTTTAA+TGG - chr4_1:80048492-80048511 Msa0576020:intron 20.0%
!!! AATTTGCTTAAGTGTATAAT+TGG - chr4_1:80048955-80048974 Msa0576020:intron 20.0%
!!! GCTTGAGATTATTTATTTTT+AGG - chr4_1:80049117-80049136 Msa0576020:intron 20.0%
!! ACTATATAAAACTTGCATTT+GGG + chr4_1:80049180-80049199 None:intergenic 20.0%
!! AACTATATAAAACTTGCATT+TGG + chr4_1:80049181-80049200 None:intergenic 20.0%
!! CCTAAATTTCTTATAAATGA+TGG + chr4_1:80049205-80049224 None:intergenic 20.0%
!! CCATCATTTATAAGAAATTT+AGG - chr4_1:80049202-80049221 Msa0576020:CDS 20.0%
!!! TATTTTTAATCTAATGGTTG+AGG + chr4_1:80049655-80049674 None:intergenic 20.0%
!! TTATGAGAATTGATGTAATA+AGG + chr4_1:80049713-80049732 None:intergenic 20.0%
!! TAAATTAGAGATTTAATCCT+AGG - chr4_1:80049790-80049809 Msa0576020:CDS 20.0%
! TTAAAAATGGTACTTTGTCA+TGG - chr4_1:80042622-80042641 Msa0576020:three_prime_UTR 25.0%
! AATTGTAATAACAGAATCAG+CGG + chr4_1:80043025-80043044 None:intergenic 25.0%
! AAAAGAGGTAAATAATGATG+TGG + chr4_1:80043546-80043565 None:intergenic 25.0%
! TCAAAATTGATGCAAAAGAA+TGG + chr4_1:80043591-80043610 None:intergenic 25.0%
!! TCAATTTTGAATTTCACTCT+AGG - chr4_1:80043601-80043620 Msa0576020:intron 25.0%
!! CAATTTTGAATTTCACTCTA+GGG - chr4_1:80043602-80043621 Msa0576020:intron 25.0%
!! AGACAAATGTGAAAACTTTT+CGG + chr4_1:80043832-80043851 None:intergenic 25.0%
!! AAAGTTTTCACATTTGTCTT+TGG - chr4_1:80043833-80043852 Msa0576020:intron 25.0%
! AGTTGCTAAAATAAGTCTTA+TGG + chr4_1:80044095-80044114 None:intergenic 25.0%
!!! CCAAAATACATTTTTAAGTG+TGG + chr4_1:80044128-80044147 None:intergenic 25.0%
!! CCACACTTAAAAATGTATTT+TGG - chr4_1:80044125-80044144 Msa0576020:intron 25.0%
!!! ATGTATTTTGGTAAAAACGA+AGG - chr4_1:80044137-80044156 Msa0576020:intron 25.0%
!!! CGAACATATTTTTCAGAAAA+TGG - chr4_1:80044168-80044187 Msa0576020:intron 25.0%
!!! ACATATTTTTCAGAAAATGG+AGG - chr4_1:80044171-80044190 Msa0576020:intron 25.0%
! AATAGAGCTGTTAAAGAAAA+AGG + chr4_1:80044312-80044331 None:intergenic 25.0%
! TATTATGTTATTAGAGAGTG+TGG - chr4_1:80044421-80044440 Msa0576020:intron 25.0%
!! ATTATGTTATTAGAGAGTGT+GGG - chr4_1:80044422-80044441 Msa0576020:intron 25.0%
! ATTCATTATTATGGTATTGC+TGG + chr4_1:80044526-80044545 None:intergenic 25.0%
! ACTCCAAGTATTCATTATTA+TGG + chr4_1:80044535-80044554 None:intergenic 25.0%
! AAAACAATGTATATGATCAG+TGG - chr4_1:80044569-80044588 Msa0576020:intron 25.0%
! AACAAGATACAAGATACAAA+AGG - chr4_1:80044682-80044701 Msa0576020:intron 25.0%
! AATAATTCACCAAACTACAT+AGG + chr4_1:80044838-80044857 None:intergenic 25.0%
! CAGTGTAAAATACTTAAGTA+TGG - chr4_1:80045011-80045030 Msa0576020:intron 25.0%
!!! TATTCTGAGTTACTTTTTGT+GGG + chr4_1:80045438-80045457 None:intergenic 25.0%
!!! ATATTCTGAGTTACTTTTTG+TGG + chr4_1:80045439-80045458 None:intergenic 25.0%
!! AGAAAACTTGGAAAATTTTG+TGG - chr4_1:80045490-80045509 Msa0576020:intron 25.0%
! TTTAGAGAATTCAACATTGT+GGG + chr4_1:80045978-80045997 None:intergenic 25.0%
! ATTTAGAGAATTCAACATTG+TGG + chr4_1:80045979-80045998 None:intergenic 25.0%
!!! AAAAGAACCATTGATTTGAA+AGG + chr4_1:80046087-80046106 None:intergenic 25.0%
!! ATCAATGGTTCTTTTATCAA+AGG - chr4_1:80046092-80046111 Msa0576020:intron 25.0%
!!! GTTTTTAAAAGTCGATATCA+TGG + chr4_1:80046211-80046230 None:intergenic 25.0%
!! TCTTCATGTTATTTGTACTT+AGG - chr4_1:80046354-80046373 Msa0576020:intron 25.0%
! AAACATAGATTGATGCTATT+CGG + chr4_1:80046705-80046724 None:intergenic 25.0%
!! CTATGTTTCTATATTGCTAA+AGG - chr4_1:80046717-80046736 Msa0576020:intron 25.0%
! GAGTAGAATAATTTAATCAG+TGG + chr4_1:80046788-80046807 None:intergenic 25.0%
! CTGATTAAATTATTCTACTC+AGG - chr4_1:80046788-80046807 Msa0576020:intron 25.0%
! GATTAAATTATTCTACTCAG+GGG - chr4_1:80046790-80046809 Msa0576020:intron 25.0%
! TCATTGGATTCTCTTTATAT+TGG - chr4_1:80046957-80046976 Msa0576020:intron 25.0%
!!! AGCTTGTTTCTATAACTTTT+AGG - chr4_1:80046983-80047002 Msa0576020:intron 25.0%
! ATTAAATCCACACTTTCAAA+TGG + chr4_1:80047053-80047072 None:intergenic 25.0%
!! CACATACATACAAATTTTCA+TGG + chr4_1:80047095-80047114 None:intergenic 25.0%
! ATAAGCATCATGTGAAAAAT+TGG + chr4_1:80047342-80047361 None:intergenic 25.0%
!! ATGTGAGTGTATTTCTAAAA+TGG - chr4_1:80047496-80047515 Msa0576020:intron 25.0%
! TTGTGAAAATATACACATAC+TGG - chr4_1:80047567-80047586 Msa0576020:intron 25.0%
! ATGAAAATTTAACTGCTTAC+AGG - chr4_1:80047731-80047750 Msa0576020:intron 25.0%
! AAAAGAGCAATATAGAATGT+GGG + chr4_1:80047866-80047885 None:intergenic 25.0%
!! TTTTGGATCCATTAAAACTA+CGG - chr4_1:80047882-80047901 Msa0576020:intron 25.0%
!!! TTTTTTCTTCCACAAACAAA+AGG - chr4_1:80047909-80047928 Msa0576020:intron 25.0%
! ATTAAACCATTGAGGATATA+AGG + chr4_1:80048048-80048067 None:intergenic 25.0%
!! GTTTAATCTACAGTTTTCTT+AGG - chr4_1:80048061-80048080 Msa0576020:intron 25.0%
!!! TAAACTGTGTTGATTTTTGT+GGG - chr4_1:80048156-80048175 Msa0576020:intron 25.0%
!!! ATTTTTAACTAGTGTTTTGG+TGG - chr4_1:80048676-80048695 Msa0576020:intron 25.0%
!!! TTTTTAACTAGTGTTTTGGT+GGG - chr4_1:80048677-80048696 Msa0576020:intron 25.0%
! CATTAACACAATAAGAAGAT+AGG + chr4_1:80048721-80048740 None:intergenic 25.0%
! TGTTATATTGTTGGTATCAT+TGG + chr4_1:80048873-80048892 None:intergenic 25.0%
! TTTATAGATGAAATAGCCAT+TGG - chr4_1:80049013-80049032 Msa0576020:intron 25.0%
! TGAACCAAACATGATATAAA+AGG - chr4_1:80049228-80049247 Msa0576020:intron 25.0%
! GAACCAAACATGATATAAAA+GGG - chr4_1:80049229-80049248 Msa0576020:intron 25.0%
!! TTTCCCTTTTATATCATGTT+TGG + chr4_1:80049235-80049254 None:intergenic 25.0%
! TGAATGAAAATCCAAAGAAA+TGG - chr4_1:80049381-80049400 Msa0576020:CDS 25.0%
! GAATGAAAATCCAAAGAAAT+GGG - chr4_1:80049382-80049401 Msa0576020:CDS 25.0%
! GACATAAATGCAAACAATAA+GGG + chr4_1:80049572-80049591 None:intergenic 25.0%
! AGACATAAATGCAAACAATA+AGG + chr4_1:80049573-80049592 None:intergenic 25.0%
! AGTTTATCATGTAAAATCCT+AGG + chr4_1:80049810-80049829 None:intergenic 25.0%
!! TTTTACATGATAAACTTCCT+AGG - chr4_1:80049814-80049833 Msa0576020:exon 25.0%
! ATACAATATGAGAAGGTATG+GGG + chr4_1:80042843-80042862 None:intergenic 30.0%
! GATACAATATGAGAAGGTAT+GGG + chr4_1:80042844-80042863 None:intergenic 30.0%
AGATACAATATGAGAAGGTA+TGG + chr4_1:80042845-80042864 None:intergenic 30.0%
! GCTGATTCTGTTATTACAAT+TGG - chr4_1:80043024-80043043 Msa0576020:CDS 30.0%
GATTCTGTTATTACAATTGG+AGG - chr4_1:80043027-80043046 Msa0576020:CDS 30.0%
! CTTCTTTGGATATAAGTTGA+AGG + chr4_1:80043203-80043222 None:intergenic 30.0%
AGAAAGTAAGGAAAAGGAAA+AGG + chr4_1:80043269-80043288 None:intergenic 30.0%
AAATTGATGCAAAAGAATGG+AGG + chr4_1:80043588-80043607 None:intergenic 30.0%
TGTGGATCATATATAATGTG+TGG + chr4_1:80043688-80043707 None:intergenic 30.0%
!! AAAAAAAAAGTGCTCTTGCA+TGG + chr4_1:80043757-80043776 None:intergenic 30.0%
!! TACTATCTTTTGTTGTCTCT+GGG + chr4_1:80043805-80043824 None:intergenic 30.0%
!! TTACTATCTTTTGTTGTCTC+TGG + chr4_1:80043806-80043825 None:intergenic 30.0%
ACTTGAAAGAATTGGAGATT+GGG + chr4_1:80044007-80044026 None:intergenic 30.0%
!! ATGAAAGCACTTGAAAGAAT+TGG + chr4_1:80044015-80044034 None:intergenic 30.0%
! AAAATTTAAGGCCCAAACTA+TGG + chr4_1:80044046-80044065 None:intergenic 30.0%
!!! TATTTTGGTAAAAACGAAGG+AGG - chr4_1:80044140-80044159 Msa0576020:intron 30.0%
TACTTGTTTGACAAACAAGA+TGG + chr4_1:80044279-80044298 None:intergenic 30.0%
!!! ATTTTTTAGGATCTTACCCA+GGG + chr4_1:80044341-80044360 None:intergenic 30.0%
!!! TATTTTTTAGGATCTTACCC+AGG + chr4_1:80044342-80044361 None:intergenic 30.0%
TCAAGAATCCAAACATTCTT+GGG - chr4_1:80044600-80044619 Msa0576020:intron 30.0%
CAAAAATCCAAATCTAGTCA+CGG + chr4_1:80044898-80044917 None:intergenic 30.0%
TCAGTACCAAAATTTGAAGA+TGG + chr4_1:80045177-80045196 None:intergenic 30.0%
AAAATCTTCAACACTAAGCA+AGG + chr4_1:80045256-80045275 None:intergenic 30.0%
ACTGATGAAAGGAATAATAG+CGG - chr4_1:80045402-80045421 Msa0576020:intron 30.0%
! AAACTTGGAAAATTTTGTGG+CGG - chr4_1:80045493-80045512 Msa0576020:intron 30.0%
TTTGACCAACAGGAAATAAA+TGG - chr4_1:80045730-80045749 Msa0576020:CDS 30.0%
TTGACCAACAGGAAATAAAT+GGG - chr4_1:80045731-80045750 Msa0576020:intron 30.0%
ACCATATGATATTCTATCTG+TGG - chr4_1:80045949-80045968 Msa0576020:intron 30.0%
ACCACAGATAGAATATCATA+TGG + chr4_1:80045953-80045972 None:intergenic 30.0%
GACACTGAATTACAAAGAAT+TGG + chr4_1:80046180-80046199 None:intergenic 30.0%
ATTCTTTGTAATTCAGTGTC+AGG - chr4_1:80046180-80046199 Msa0576020:intron 30.0%
ACCAATTCTTCATATACTTG+TGG - chr4_1:80046229-80046248 Msa0576020:intron 30.0%
ACCACAAGTATATGAAGAAT+TGG + chr4_1:80046233-80046252 None:intergenic 30.0%
! AGCAGGATAATCTTTTACTA+TGG - chr4_1:80046384-80046403 Msa0576020:intron 30.0%
TTATACTCGAAAAATTGGTG+AGG - chr4_1:80046442-80046461 Msa0576020:intron 30.0%
! CAAGTTTGATGATATTGTTG+TGG - chr4_1:80046870-80046889 Msa0576020:intron 30.0%
ATAAAGAGAATCCAATGAAG+CGG + chr4_1:80046955-80046974 None:intergenic 30.0%
TTGGATTCTCTTTATATTGG+AGG - chr4_1:80046960-80046979 Msa0576020:intron 30.0%
GTAGATGAAAATGTACTTCA+TGG + chr4_1:80047201-80047220 None:intergenic 30.0%
ACTGGAAATTAACAAAACGT+AGG + chr4_1:80047231-80047250 None:intergenic 30.0%
!! TACGTTTTGTTAATTTCCAG+TGG - chr4_1:80047230-80047249 Msa0576020:intron 30.0%
!! ACGTTTTGTTAATTTCCAGT+GGG - chr4_1:80047231-80047250 Msa0576020:intron 30.0%
ACATGATGCTTATACCATTT+AGG - chr4_1:80047349-80047368 Msa0576020:intron 30.0%
! ATACACTCACATTTTGTATG+TGG + chr4_1:80047488-80047507 None:intergenic 30.0%
GGTTCTTATTGAGAAAATCA+AGG - chr4_1:80047588-80047607 Msa0576020:intron 30.0%
TCGAATAAATACCTGTATAC+CGG + chr4_1:80047843-80047862 None:intergenic 30.0%
CAAAAGAGCAATATAGAATG+TGG + chr4_1:80047867-80047886 None:intergenic 30.0%
! CACATTCTATATTGCTCTTT+TGG - chr4_1:80047865-80047884 Msa0576020:intron 30.0%
!!! AAAAGACACCGTAGTTTTAA+TGG + chr4_1:80047893-80047912 None:intergenic 30.0%
!! AATAAATGGCCTTTTGTTTG+TGG + chr4_1:80047921-80047940 None:intergenic 30.0%
! GAATATCTAGTTCACAAACT+TGG - chr4_1:80047952-80047971 Msa0576020:intron 30.0%
GAATATCTTTCCATTTCTTG+TGG - chr4_1:80048015-80048034 Msa0576020:intron 30.0%
TCTTTACCTTATATCCTCAA+TGG - chr4_1:80048039-80048058 Msa0576020:intron 30.0%
AACTGTAGATTAAACCATTG+AGG + chr4_1:80048056-80048075 None:intergenic 30.0%
! ATCTACAGTTTTCTTAGGTA+TGG - chr4_1:80048066-80048085 Msa0576020:intron 30.0%
! TCTACAGTTTTCTTAGGTAT+GGG - chr4_1:80048067-80048086 Msa0576020:intron 30.0%
!! GCTCTAAGGAAATAATATGA+AGG + chr4_1:80048109-80048128 None:intergenic 30.0%
! TTTCCTTAGAGCATCTTTAA+TGG - chr4_1:80048117-80048136 Msa0576020:intron 30.0%
! TTCCTTAGAGCATCTTTAAT+GGG - chr4_1:80048118-80048137 Msa0576020:intron 30.0%
!!! GTAAACTGTGTTGATTTTTG+TGG - chr4_1:80048155-80048174 Msa0576020:intron 30.0%
!!! AAACTGTGTTGATTTTTGTG+GGG - chr4_1:80048157-80048176 Msa0576020:intron 30.0%
! TTTAGGATTTAACCAATCCA+TGG - chr4_1:80048191-80048210 Msa0576020:intron 30.0%
AAAACTACTTAGATCAACCA+TGG + chr4_1:80048211-80048230 None:intergenic 30.0%
TGCTTAAGTGTATAATTGGA+AGG - chr4_1:80048959-80048978 Msa0576020:intron 30.0%
GAGAAAAAGTTAACCCAAAA+CGG - chr4_1:80048981-80049000 Msa0576020:intron 30.0%
!! TAAAGAAAATAGGCCGTTTT+GGG + chr4_1:80048997-80049016 None:intergenic 30.0%
! ATAAAGAAAATAGGCCGTTT+TGG + chr4_1:80048998-80049017 None:intergenic 30.0%
TTAGTGTACATCAACTATAG+AGG + chr4_1:80049146-80049165 None:intergenic 30.0%
TATTGTTTATTCCTTCTCAG+CGG - chr4_1:80049329-80049348 Msa0576020:CDS 30.0%
TAAATATATCTTGCTCCAAG+AGG - chr4_1:80049596-80049615 Msa0576020:CDS 30.0%
AGAATTGATGTAATAAGGTG+AGG + chr4_1:80049708-80049727 None:intergenic 30.0%
TGGGAAGAAAAAGATGAAAA+GGG + chr4_1:80049744-80049763 None:intergenic 30.0%
AAAATGGTACTTTGTCATGG+TGG - chr4_1:80042625-80042644 Msa0576020:three_prime_UTR 35.0%
AAATGGTACTTTGTCATGGT+GGG - chr4_1:80042626-80042645 Msa0576020:three_prime_UTR 35.0%
!! TTTTTCGACAGTGGCATTTA+GGG + chr4_1:80042671-80042690 None:intergenic 35.0%
AGGAAAATGGCGAAAGATAA+AGG - chr4_1:80042690-80042709 Msa0576020:three_prime_UTR 35.0%
GCAAGAGATACAATATGAGA+AGG + chr4_1:80042850-80042869 None:intergenic 35.0%
AATTGAGTGGAAACAAAGTG+CGG - chr4_1:80042962-80042981 Msa0576020:three_prime_UTR 35.0%
ACTCAAATACTTAGCAGCAA+CGG + chr4_1:80043082-80043101 None:intergenic 35.0%
TAAGGAAAAGGAAAAGGAGA+AGG + chr4_1:80043263-80043282 None:intergenic 35.0%
AGTGAGAGAAAGTAAGGAAA+AGG + chr4_1:80043275-80043294 None:intergenic 35.0%
GAAAACAGTGAGAGAAAGTA+AGG + chr4_1:80043281-80043300 None:intergenic 35.0%
AAGTGTCTAAAGGAAAGGAA+AGG + chr4_1:80043319-80043338 None:intergenic 35.0%
!! TTTTGAATTTCACTCTAGGG+TGG - chr4_1:80043605-80043624 Msa0576020:intron 35.0%
!! TTTGAATTTCACTCTAGGGT+GGG - chr4_1:80043606-80043625 Msa0576020:intron 35.0%
ATAGTCAAGCACAAATCACA+TGG + chr4_1:80043935-80043954 None:intergenic 35.0%
CAAAGAGGAAAGAAACTTGT+TGG + chr4_1:80043970-80043989 None:intergenic 35.0%
CACTTGAAAGAATTGGAGAT+TGG + chr4_1:80044008-80044027 None:intergenic 35.0%
GAGCTGTTAAAGAAAAAGGA+GGG + chr4_1:80044308-80044327 None:intergenic 35.0%
AGAGCTGTTAAAGAAAAAGG+AGG + chr4_1:80044309-80044328 None:intergenic 35.0%
!!! TTTTTTAGGATCTTACCCAG+GGG + chr4_1:80044340-80044359 None:intergenic 35.0%
CATTATTATGGTATTGCTGG+TGG + chr4_1:80044523-80044542 None:intergenic 35.0%
ACTTGGAGTGAAATCATAAG+AGG - chr4_1:80044546-80044565 Msa0576020:intron 35.0%
GTCAAGAATCCAAACATTCT+TGG - chr4_1:80044599-80044618 Msa0576020:intron 35.0%
CAAGAATCCAAACATTCTTG+GGG - chr4_1:80044601-80044620 Msa0576020:intron 35.0%
GATAGAACCATAAACAGTCA+AGG - chr4_1:80044623-80044642 Msa0576020:intron 35.0%
AAAGGTTTACTAGAGTCGAA+TGG - chr4_1:80044700-80044719 Msa0576020:intron 35.0%
!! ATATTGGCTTATGACTCTGA+AGG + chr4_1:80044749-80044768 None:intergenic 35.0%
TTCAGAGTCATAAGCCAATA+TGG - chr4_1:80044748-80044767 Msa0576020:CDS 35.0%
ATGCTCATTCCTATGTAGTT+TGG - chr4_1:80044826-80044845 Msa0576020:intron 35.0%
CAGGGAAAACAAGTATACAA+AGG + chr4_1:80044922-80044941 None:intergenic 35.0%
! TGCACTCCATCTTCAAATTT+TGG - chr4_1:80045168-80045187 Msa0576020:intron 35.0%
! CATTTTCAACGCATAACAAG+TGG - chr4_1:80045276-80045295 Msa0576020:CDS 35.0%
! GTGTTTCTGTTCTTCTTCAA+TGG + chr4_1:80045375-80045394 None:intergenic 35.0%
ACACATTAGCTACTGATGAA+AGG - chr4_1:80045391-80045410 Msa0576020:intron 35.0%
CTGTTTGCAACAAACAACAA+CGG - chr4_1:80045696-80045715 Msa0576020:CDS 35.0%
GCAAAGAAAGACCATAATGT+AGG - chr4_1:80045787-80045806 Msa0576020:intron 35.0%
AAGAAAGACCATAATGTAGG+CGG - chr4_1:80045790-80045809 Msa0576020:intron 35.0%
!! CCATTGATTTGAAAGGAGTT+TGG + chr4_1:80046080-80046099 None:intergenic 35.0%
CCAAACTCCTTTCAAATCAA+TGG - chr4_1:80046077-80046096 Msa0576020:intron 35.0%
CATATACTTGTGGTGTACAA+AGG - chr4_1:80046239-80046258 Msa0576020:intron 35.0%
TACTCTTTATCTTCTGCTGT+TGG - chr4_1:80046287-80046306 Msa0576020:intron 35.0%
!!! TGTACTTAGGCTTTTTTAGC+AGG - chr4_1:80046367-80046386 Msa0576020:intron 35.0%
GAAAAATTGGTGAGGATCTT+GGG - chr4_1:80046450-80046469 Msa0576020:intron 35.0%
AAAAATTGGTGAGGATCTTG+GGG - chr4_1:80046451-80046470 Msa0576020:intron 35.0%
! CTATTGTTGGATCTGAAATC+AGG + chr4_1:80046509-80046528 None:intergenic 35.0%
AGAAGCTTGGTTTCTATTGT+TGG + chr4_1:80046522-80046541 None:intergenic 35.0%
CCACACTTTCAAATGGTATT+CGG + chr4_1:80047046-80047065 None:intergenic 35.0%
!! CGTTTTGTTAATTTCCAGTG+GGG - chr4_1:80047232-80047251 Msa0576020:intron 35.0%
!! GTTTTGTTAATTTCCAGTGG+GGG - chr4_1:80047233-80047252 Msa0576020:intron 35.0%
ATTGAGTAGCTTGAAAGCAA+GGG - chr4_1:80047286-80047305 Msa0576020:intron 35.0%
ACAAAGTTGTGGAAGTAATC+CGG + chr4_1:80047414-80047433 None:intergenic 35.0%
TACTTCCACAACTTTGTTCA+AGG - chr4_1:80047417-80047436 Msa0576020:intron 35.0%
! CTAAAATGGTAATGAGCAGA+AGG - chr4_1:80047510-80047529 Msa0576020:intron 35.0%
CGAATAAATACCTGTATACC+GGG + chr4_1:80047842-80047861 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG + chr4_1:80047935-80047954 None:intergenic 35.0%
AATAAATGGCCTTTCGTTTG+TGG + chr4_1:80047984-80048003 None:intergenic 35.0%
TTCGTGTGATGCACAATAAA+TGG + chr4_1:80047935-80047954 None:intergenic 35.0%
AGGTAAAGATCCACAAGAAA+TGG + chr4_1:80048028-80048047 None:intergenic 35.0%
! TCCTTAGAGCATCTTTAATG+GGG - chr4_1:80048119-80048138 Msa0576020:intron 35.0%
TTTAATGGGGTGAACTAAAG+TGG - chr4_1:80048132-80048151 Msa0576020:intron 35.0%
TTAATGGGGTGAACTAAAGT+GGG - chr4_1:80048133-80048152 Msa0576020:intron 35.0%
!! GTGGGGTCAAATTGTTATTT+AGG - chr4_1:80048174-80048193 Msa0576020:intron 35.0%
TACTTAGATCAACCATGGAT+TGG + chr4_1:80048206-80048225 None:intergenic 35.0%
AATAAGAAGATAGGAGAGAC+GGG + chr4_1:80048712-80048731 None:intergenic 35.0%
CAATAAGAAGATAGGAGAGA+CGG + chr4_1:80048713-80048732 None:intergenic 35.0%
GGGAAAAGAAAAGTTTGATC+AGG - chr4_1:80049249-80049268 Msa0576020:intron 35.0%
GAAAATCCAAAGAAATGGGA+AGG - chr4_1:80049386-80049405 Msa0576020:CDS 35.0%
ATGTTAATGAATCTGTTCCC+AGG - chr4_1:80049504-80049523 Msa0576020:CDS 35.0%
TCTCATACTATACATCCTCT+TGG + chr4_1:80049614-80049633 None:intergenic 35.0%
GTGGGAAGAAAAAGATGAAA+AGG + chr4_1:80049745-80049764 None:intergenic 35.0%
TTTATGGGAGTGATGATTGT+GGG + chr4_1:80049763-80049782 None:intergenic 35.0%
ATTTATGGGAGTGATGATTG+TGG + chr4_1:80049764-80049783 None:intergenic 35.0%
AGATTGAGACTTAAACCTTC+AGG + chr4_1:80049854-80049873 None:intergenic 35.0%
!!! CTTTTTCGACAGTGGCATTT+AGG + chr4_1:80042672-80042691 None:intergenic 40.0%
CTAAATGCCACTGTCGAAAA+AGG - chr4_1:80042670-80042689 Msa0576020:three_prime_UTR 40.0%
!!! CCATTTTCCTTTTTCGACAG+TGG + chr4_1:80042680-80042699 None:intergenic 40.0%
CCACTGTCGAAAAAGGAAAA+TGG - chr4_1:80042677-80042696 Msa0576020:three_prime_UTR 40.0%
!! CTTTCTGGAATGCAATTGAG+TGG - chr4_1:80042949-80042968 Msa0576020:three_prime_UTR 40.0%
TGGAAACAAAGTGCGGAAAT+TGG - chr4_1:80042969-80042988 Msa0576020:three_prime_UTR 40.0%
AACAAGAAGATTGCCAGTGA+GGG + chr4_1:80043160-80043179 None:intergenic 40.0%
CTTCTTGTTGAGCGTTTGAT+TGG - chr4_1:80043171-80043190 Msa0576020:CDS 40.0%
TTGGCAAGTGTCTAAAGGAA+AGG + chr4_1:80043324-80043343 None:intergenic 40.0%
AAAGAAAAGCTCACCAACCA+AGG - chr4_1:80043351-80043370 Msa0576020:intron 40.0%
AAGAAAAGCTCACCAACCAA+GGG - chr4_1:80043352-80043371 Msa0576020:intron 40.0%
AGGCCATATGTTATTCCTGT+TGG - chr4_1:80043378-80043397 Msa0576020:intron 40.0%
CCATATGTTATTCCTGTTGG+CGG - chr4_1:80043381-80043400 Msa0576020:intron 40.0%
!! TTGAATTTCACTCTAGGGTG+GGG - chr4_1:80043607-80043626 Msa0576020:intron 40.0%
! AGAAGGTATACATAGACCCA+AGG + chr4_1:80043723-80043742 None:intergenic 40.0%
TGGAAAACATGTCTCGTCAT+AGG - chr4_1:80043853-80043872 Msa0576020:intron 40.0%
TCGATACAAGACTAGACTAG+TGG + chr4_1:80043903-80043922 None:intergenic 40.0%
GAGATTGTTGAGAGACAAAG+AGG + chr4_1:80043985-80044004 None:intergenic 40.0%
TCATCTCCTCATCCATAGTT+TGG - chr4_1:80044031-80044050 Msa0576020:intron 40.0%
CATCTCCTCATCCATAGTTT+GGG - chr4_1:80044032-80044051 Msa0576020:intron 40.0%
GTTCTATCCCCAAGAATGTT+TGG + chr4_1:80044611-80044630 None:intergenic 40.0%
TGTCGATCCTTGACTGTTTA+TGG + chr4_1:80044633-80044652 None:intergenic 40.0%
! CTGAGCACATTTTGCCATAT+TGG + chr4_1:80044765-80044784 None:intergenic 40.0%
TATCCTTGAAGCCTCAAACT+CGG - chr4_1:80044795-80044814 Msa0576020:intron 40.0%
CATATTCTTAGCCGAGTTTG+AGG + chr4_1:80044809-80044828 None:intergenic 40.0%
GAATTTGCCGTGACTAGATT+TGG - chr4_1:80044888-80044907 Msa0576020:intron 40.0%
!! AGCATTCAGGTTGACTCATA+CGG + chr4_1:80045068-80045087 None:intergenic 40.0%
! CTTTGAGTTCTTGTCAGTCA+GGG + chr4_1:80045102-80045121 None:intergenic 40.0%
! TCTTTGAGTTCTTGTCAGTC+AGG + chr4_1:80045103-80045122 None:intergenic 40.0%
CACCTTCATTGAGTGAGATA+GGG + chr4_1:80045126-80045145 None:intergenic 40.0%
ACACCTTCATTGAGTGAGAT+AGG + chr4_1:80045127-80045146 None:intergenic 40.0%
!! CTCAATGAAGGTGTTTAGAG+TGG - chr4_1:80045133-80045152 Msa0576020:CDS 40.0%
ACACTAAGCAAGGAAGTCTT+TGG + chr4_1:80045246-80045265 None:intergenic 40.0%
AACGCATAACAAGTGGAAAG+AGG - chr4_1:80045283-80045302 Msa0576020:CDS 40.0%
TCAATGGCAGAACCTATTGT+GGG + chr4_1:80045359-80045378 None:intergenic 40.0%
TTCAATGGCAGAACCTATTG+TGG + chr4_1:80045360-80045379 None:intergenic 40.0%
!! TTGGAAAATTTTGTGGCGGA+CGG - chr4_1:80045497-80045516 Msa0576020:intron 40.0%
GATGTTTGTCATCCTTGGAT+CGG + chr4_1:80045626-80045645 None:intergenic 40.0%
ATCCAAGGATGACAAACATC+TGG - chr4_1:80045626-80045645 Msa0576020:intron 40.0%
ATCCAGATGTTTGTCATCCT+TGG + chr4_1:80045631-80045650 None:intergenic 40.0%
! CAAGAACTTGTTTGACCAAC+AGG - chr4_1:80045720-80045739 Msa0576020:CDS 40.0%
GGTACCCATTTATTTCCTGT+TGG + chr4_1:80045738-80045757 None:intergenic 40.0%
! AGGATTTTTATGCAGGAGCA+AGG - chr4_1:80045815-80045834 Msa0576020:intron 40.0%
TGCTCCAAATGTGCTATGTT+CGG - chr4_1:80046003-80046022 Msa0576020:intron 40.0%
TATGTCAGAAGGGGGATATT+TGG - chr4_1:80046030-80046049 Msa0576020:intron 40.0%
ATTTGGACCAGACATAAGCT+AGG - chr4_1:80046047-80046066 Msa0576020:intron 40.0%
CCATATACCTAGCTTATGTC+TGG + chr4_1:80046057-80046076 None:intergenic 40.0%
CCAGACATAAGCTAGGTATA+TGG - chr4_1:80046054-80046073 Msa0576020:intron 40.0%
CGAAAAATTGGTGAGGATCT+TGG - chr4_1:80046449-80046468 Msa0576020:intron 40.0%
! TGGATCTGAAATCAGGACTT+GGG + chr4_1:80046502-80046521 None:intergenic 40.0%
! TTGGATCTGAAATCAGGACT+TGG + chr4_1:80046503-80046522 None:intergenic 40.0%
ATTGAGCTGCAGATTCAAAG+TGG - chr4_1:80046835-80046854 Msa0576020:intron 40.0%
GATGATATTGTTGTGGCTTG+TGG - chr4_1:80046877-80046896 Msa0576020:intron 40.0%
AGAATCCAATGAAGCGGAAA+CGG + chr4_1:80046949-80046968 None:intergenic 40.0%
CCGAATACCATTTGAAAGTG+TGG - chr4_1:80047043-80047062 Msa0576020:intron 40.0%
AGCTTAAGCTCACATTCACT+GGG + chr4_1:80047147-80047166 None:intergenic 40.0%
CATTGAGTAGCTTGAAAGCA+AGG - chr4_1:80047285-80047304 Msa0576020:intron 40.0%
ATGTGAGTCATCTAAGCAGA+AGG + chr4_1:80047316-80047335 None:intergenic 40.0%
CAAAGTTGTGGAAGTAATCC+GGG + chr4_1:80047413-80047432 None:intergenic 40.0%
! TTTGTTCAAGGCTTGCTTGA+CGG - chr4_1:80047429-80047448 Msa0576020:intron 40.0%
TGTGCCAAGTCATAACATGA+AGG - chr4_1:80047640-80047659 Msa0576020:intron 40.0%
GGAACCTTCATGTTATGACT+TGG + chr4_1:80047647-80047666 None:intergenic 40.0%
GTTCCTAAAACACATGTCTG+TGG - chr4_1:80047662-80047681 Msa0576020:intron 40.0%
! AGACCACAGACATGTGTTTT+AGG + chr4_1:80047668-80047687 None:intergenic 40.0%
GTCTGTGAAACTTCATCATC+TGG - chr4_1:80047684-80047703 Msa0576020:intron 40.0%
ATTTAACTGCTTACAGGCCA+AGG - chr4_1:80047737-80047756 Msa0576020:intron 40.0%
TTTAACTGCTTACAGGCCAA+GGG - chr4_1:80047738-80047757 Msa0576020:intron 40.0%
CTATGCAATGAACACTTCTG+AGG - chr4_1:80047767-80047786 Msa0576020:intron 40.0%
AAAGAAGTTGCTGAAGCTAC+AGG - chr4_1:80047804-80047823 Msa0576020:intron 40.0%
! TGGTTGTTTCCACAAACGAA+AGG - chr4_1:80047972-80047991 Msa0576020:intron 40.0%
ACCCCATTAAAGATGCTCTA+AGG + chr4_1:80048123-80048142 None:intergenic 40.0%
TTTATTCCTTCTCAGCGGTA+AGG - chr4_1:80049334-80049353 Msa0576020:CDS 40.0%
ATCCAAAGAAATGGGAAGGA+AGG - chr4_1:80049390-80049409 Msa0576020:CDS 40.0%
TTCCTTCCTTCCCATTTCTT+TGG + chr4_1:80049395-80049414 None:intergenic 40.0%
AAGATCCTCTTCGTACATAC+AGG - chr4_1:80049413-80049432 Msa0576020:CDS 40.0%
CCTTGTCATACAATCCTAAG+AGG + chr4_1:80049442-80049461 None:intergenic 40.0%
CCTCTTAGGATTGTATGACA+AGG - chr4_1:80049439-80049458 Msa0576020:CDS 40.0%
TTTCCAATTCCATCTTGCCT+GGG + chr4_1:80049524-80049543 None:intergenic 40.0%
AGGTGAAAGAGAAAGAACCT+AGG + chr4_1:80049834-80049853 None:intergenic 40.0%
GTTCTTTCTCTTTCACCTGA+AGG - chr4_1:80049836-80049855 Msa0576020:five_prime_UTR 40.0%
GAAGCAAGTCTCAACAGTGA+TGG - chr4_1:80042756-80042775 Msa0576020:three_prime_UTR 45.0%
! TATGAGAAGGTATGGGGTCT+AGG + chr4_1:80042837-80042856 None:intergenic 45.0%
TTCCATCTGTGAATCGGAGT+CGG + chr4_1:80042880-80042899 None:intergenic 45.0%
GGAAGCTTCCATCTGTGAAT+CGG + chr4_1:80042886-80042905 None:intergenic 45.0%
! TCTGTATTTGCTGGCAGGTT+CGG + chr4_1:80042907-80042926 None:intergenic 45.0%
! ACACTTCTGTATTTGCTGGC+AGG + chr4_1:80042912-80042931 None:intergenic 45.0%
TGCCAGCAAATACAGAAGTG+TGG - chr4_1:80042911-80042930 Msa0576020:three_prime_UTR 45.0%
AGCCACACTTCTGTATTTGC+TGG + chr4_1:80042916-80042935 None:intergenic 45.0%
GCGGAAATTGGAGTTCTTGA+TGG - chr4_1:80042981-80043000 Msa0576020:three_prime_UTR 45.0%
! AGCGGATTCAGCAATTGCAT+CGG + chr4_1:80043007-80043026 None:intergenic 45.0%
TGGCACGACAGTGATTACTT+TGG + chr4_1:80043056-80043075 None:intergenic 45.0%
GAAGTGCGGAGTATAAGGAA+AGG + chr4_1:80043111-80043130 None:intergenic 45.0%
! GCTTAGAAGTGCGGAGTATA+AGG + chr4_1:80043116-80043135 None:intergenic 45.0%
CAACGAGATGCTTAGAAGTG+CGG + chr4_1:80043125-80043144 None:intergenic 45.0%
CAACAAGAAGATTGCCAGTG+AGG + chr4_1:80043161-80043180 None:intergenic 45.0%
AAAGGAAAAGGAGAAGGAGG+AGG + chr4_1:80043257-80043276 None:intergenic 45.0%
GGAAAAGGAAAAGGAGAAGG+AGG + chr4_1:80043260-80043279 None:intergenic 45.0%
!! GAGCTTTTCTTTGAGGAGGT+TGG + chr4_1:80043343-80043362 None:intergenic 45.0%
!! TGGTGAGCTTTTCTTTGAGG+AGG + chr4_1:80043347-80043366 None:intergenic 45.0%
!!! GGTTGGTGAGCTTTTCTTTG+AGG + chr4_1:80043350-80043369 None:intergenic 45.0%
CCGCCAACAGGAATAACATA+TGG + chr4_1:80043384-80043403 None:intergenic 45.0%
GATCAAACTCTCTCGGAACA+TGG - chr4_1:80043403-80043422 Msa0576020:intron 45.0%
! CACATCTGAGACTGAACCTT+GGG - chr4_1:80043704-80043723 Msa0576020:intron 45.0%
AAGACTAGACTAGTGGCAAC+AGG + chr4_1:80043896-80043915 None:intergenic 45.0%
TAAGGCCCAAACTATGGATG+AGG + chr4_1:80044040-80044059 None:intergenic 45.0%
GTGTTGAAGCCAAATTCGTG+AGG - chr4_1:80044209-80044228 Msa0576020:intron 45.0%
AGGAAGACTATACTGGAAGC+AGG - chr4_1:80044238-80044257 Msa0576020:intron 45.0%
!! TGACAAACAAGATGGACTGC+AGG + chr4_1:80044271-80044290 None:intergenic 45.0%
!! GGTTTTCGTGCTCTTGTTGT+TGG + chr4_1:80044502-80044521 None:intergenic 45.0%
! TATGACTCTGAAGGAGGAGT+TGG + chr4_1:80044740-80044759 None:intergenic 45.0%
! TTGGCTTATGACTCTGAAGG+AGG + chr4_1:80044746-80044765 None:intergenic 45.0%
TCTCTTGTGAGCACAGCAAA+AGG + chr4_1:80044870-80044889 None:intergenic 45.0%
ATCGGTCAACATTAGCAGCA+GGG + chr4_1:80044940-80044959 None:intergenic 45.0%
!! TTGGTGAGAAGCACTCTGAT+CGG + chr4_1:80044958-80044977 None:intergenic 45.0%
TCTCACCAAGCATGACATGT+TGG - chr4_1:80044969-80044988 Msa0576020:intron 45.0%
TTACGCCAACATGTCATGCT+TGG + chr4_1:80044977-80044996 None:intergenic 45.0%
!! GCATTCAGGTTGACTCATAC+GGG + chr4_1:80045067-80045086 None:intergenic 45.0%
! GGTTGATTGGTTGAGCATTC+AGG + chr4_1:80045081-80045100 None:intergenic 45.0%
! TCTTGTCAGTCAGGGTTGAT+TGG + chr4_1:80045094-80045113 None:intergenic 45.0%
GACCCTATCTCACTCAATGA+AGG - chr4_1:80045121-80045140 Msa0576020:CDS 45.0%
TTTGAAGATGGAGTGCAGCA+AGG + chr4_1:80045165-80045184 None:intergenic 45.0%
! CAATGGACTTCAGCTTGAGT+TGG + chr4_1:80045201-80045220 None:intergenic 45.0%
GCATAACAAGTGGAAAGAGG+AGG - chr4_1:80045286-80045305 Msa0576020:CDS 45.0%
TGGAAAGAGGAGGTAGATTG+TGG - chr4_1:80045296-80045315 Msa0576020:intron 45.0%
AGTTGCCATTCACCCACAAT+AGG - chr4_1:80045344-80045363 Msa0576020:intron 45.0%
CAGAACCTATTGTGGGTGAA+TGG + chr4_1:80045352-80045371 None:intergenic 45.0%
GAGGCGGTAACAAGAAAACT+TGG - chr4_1:80045478-80045497 Msa0576020:intron 45.0%
TCGGAAACGGAAGTCTATTG+TGG - chr4_1:80045545-80045564 Msa0576020:intron 45.0%
GAAACGGAAGTCTATTGTGG+CGG - chr4_1:80045548-80045567 Msa0576020:intron 45.0%
GGCTAGATCTCATAAGTGAG+TGG + chr4_1:80045605-80045624 None:intergenic 45.0%
TATGAGATCTAGCCGATCCA+AGG - chr4_1:80045611-80045630 Msa0576020:intron 45.0%
GGATGACAAACATCTGGATG+TGG - chr4_1:80045632-80045651 Msa0576020:intron 45.0%
AAACATCTGGATGTGGTTGC+TGG - chr4_1:80045639-80045658 Msa0576020:intron 45.0%
ATGGGTACCAAATGTCCCAA+AGG - chr4_1:80045749-80045768 Msa0576020:intron 45.0%
TGGGTACCAAATGTCCCAAA+GGG - chr4_1:80045750-80045769 Msa0576020:intron 45.0%
GTCTTTCTTTGCTGCCTTCT+TGG + chr4_1:80045779-80045798 None:intergenic 45.0%
AATCCTAGCCGCCTACATTA+TGG + chr4_1:80045801-80045820 None:intergenic 45.0%
TCAGGAGCTCCTGATTTAGA+GGG + chr4_1:80045841-80045860 None:intergenic 45.0%
ATCAGGAGCTCCTGATTTAG+AGG + chr4_1:80045842-80045861 None:intergenic 45.0%
CACACCGAACATAGCACATT+TGG + chr4_1:80046010-80046029 None:intergenic 45.0%
!! TGTTCGGTGTGTATGTCAGA+AGG - chr4_1:80046019-80046038 Msa0576020:intron 45.0%
!! GTTCGGTGTGTATGTCAGAA+GGG - chr4_1:80046020-80046039 Msa0576020:intron 45.0%
! TTCGGTGTGTATGTCAGAAG+GGG - chr4_1:80046021-80046040 Msa0576020:intron 45.0%
AGGAATGTATACTCTGCGAC+TGG - chr4_1:80046112-80046131 Msa0576020:intron 45.0%
! ATATTGTTGTGGCTTGTGGC+AGG - chr4_1:80046881-80046900 Msa0576020:intron 45.0%
GCTTAAGCTCACATTCACTG+GGG + chr4_1:80047146-80047165 None:intergenic 45.0%
CAGCTTAAGCTCACATTCAC+TGG + chr4_1:80047148-80047167 None:intergenic 45.0%
!! ACAATTGCCGGTTTAGCACT+GGG - chr4_1:80047257-80047276 Msa0576020:intron 45.0%
TGATGAACCCAGTGCTAAAC+CGG + chr4_1:80047267-80047286 None:intergenic 45.0%
ATTCTCCGTTTGTGATGACC+CGG - chr4_1:80047392-80047411 Msa0576020:intron 45.0%
GTAATCCGGGTCATCACAAA+CGG + chr4_1:80047400-80047419 None:intergenic 45.0%
GCAAGCCTTGAACAAAGTTG+TGG + chr4_1:80047425-80047444 None:intergenic 45.0%
TCTGACCGCTAAGATGTCTA+TGG - chr4_1:80047538-80047557 Msa0576020:intron 45.0%
CACAAGCACATTATGTCTGC+TGG + chr4_1:80047622-80047641 None:intergenic 45.0%
!! TACAGGTGTTGTTCTTGACC+CGG - chr4_1:80047821-80047840 Msa0576020:intron 45.0%
TTGTTCTTGACCCGGTATAC+AGG - chr4_1:80047829-80047848 Msa0576020:intron 45.0%
ATCCTCTTCGTACATACAGG+TGG - chr4_1:80049416-80049435 Msa0576020:CDS 45.0%
TATGACAAGGTCGATCAGCT+GGG - chr4_1:80049452-80049471 Msa0576020:CDS 45.0%
CTTTCCAATTCCATCTTGCC+TGG + chr4_1:80049525-80049544 None:intergenic 45.0%
!!! TTGATTTTAATTAAAATTAT+AGG - chr4_1:80048790-80048809 Msa0576020:intron 5.0%
! TGGCATTTAGGGTGGGTAGA+GGG + chr4_1:80042660-80042679 None:intergenic 50.0%
! TCGACAGTGGCATTTAGGGT+GGG + chr4_1:80042667-80042686 None:intergenic 50.0%
TTCGACAGTGGCATTTAGGG+TGG + chr4_1:80042668-80042687 None:intergenic 50.0%
GCAAGTCTCAACAGTGATGG+CGG - chr4_1:80042759-80042778 Msa0576020:three_prime_UTR 50.0%
CAAGTCTCAACAGTGATGGC+GGG - chr4_1:80042760-80042779 Msa0576020:three_prime_UTR 50.0%
! AAGTCTCAACAGTGATGGCG+GGG - chr4_1:80042761-80042780 Msa0576020:three_prime_UTR 50.0%
AGCCATACACAGCTCCTTCA+TGG - chr4_1:80042803-80042822 Msa0576020:three_prime_UTR 50.0%
GCCATACACAGCTCCTTCAT+GGG - chr4_1:80042804-80042823 Msa0576020:three_prime_UTR 50.0%
TCTAGGTAGGATGCCCATGA+AGG + chr4_1:80042820-80042839 None:intergenic 50.0%
! AGAAGGTATGGGGTCTAGGT+AGG + chr4_1:80042833-80042852 None:intergenic 50.0%
GTGAATCGGAGTCGGAAGAT+GGG + chr4_1:80042872-80042891 None:intergenic 50.0%
TGTGAATCGGAGTCGGAAGA+TGG + chr4_1:80042873-80042892 None:intergenic 50.0%
TTCCGACTCCGATTCACAGA+TGG - chr4_1:80042875-80042894 Msa0576020:three_prime_UTR 50.0%
ATACTTAGCAGCAACGGCAG+TGG + chr4_1:80043076-80043095 None:intergenic 50.0%
AGAAGATTGCCAGTGAGGGT+GGG + chr4_1:80043156-80043175 None:intergenic 50.0%
AAGAAGATTGCCAGTGAGGG+TGG + chr4_1:80043157-80043176 None:intergenic 50.0%
GGAGGTTGGCAAGTGTCTAA+AGG + chr4_1:80043329-80043348 None:intergenic 50.0%
AAAAGCTCACCAACCAAGGG+AGG - chr4_1:80043355-80043374 Msa0576020:intron 50.0%
TAACATATGGCCTCCTCCCT+TGG + chr4_1:80043371-80043390 None:intergenic 50.0%
AGAGAGTTTGATCCGCCAAC+AGG + chr4_1:80043396-80043415 None:intergenic 50.0%
! GTTGGCGGATCAAACTCTCT+CGG - chr4_1:80043396-80043415 Msa0576020:intron 50.0%
!! ATTTCACTCTAGGGTGGGGT+AGG - chr4_1:80043611-80043630 Msa0576020:intron 50.0%
CCAAGGTTCAGTCTCAGATG+TGG + chr4_1:80043706-80043725 None:intergenic 50.0%
! CCACATCTGAGACTGAACCT+TGG - chr4_1:80043703-80043722 Msa0576020:intron 50.0%
GCATGGAGACTTAGAGGAGA+AGG + chr4_1:80043740-80043759 None:intergenic 50.0%
GCTCTTGCATGGAGACTTAG+AGG + chr4_1:80043746-80043765 None:intergenic 50.0%
TGAAGCCAAATTCGTGAGGC+AGG - chr4_1:80044213-80044232 Msa0576020:intron 50.0%
GCAGGAGAGGAAGACTATAC+TGG - chr4_1:80044231-80044250 Msa0576020:intron 50.0%
! TTTAGGATCTTACCCAGGGG+AGG + chr4_1:80044337-80044356 None:intergenic 50.0%
!! TCGTGCTCTTGTTGTTGGCT+CGG + chr4_1:80044497-80044516 None:intergenic 50.0%
! TAGCCGAGTTTGAGGCTTCA+AGG + chr4_1:80044801-80044820 None:intergenic 50.0%
GTGAGCACAGCAAAAGGACA+GGG + chr4_1:80044864-80044883 None:intergenic 50.0%
TGTGAGCACAGCAAAAGGAC+AGG + chr4_1:80044865-80044884 None:intergenic 50.0%
GATCGGTCAACATTAGCAGC+AGG + chr4_1:80044941-80044960 None:intergenic 50.0%
AGGTAGATTGTGGACCCTGT+TGG - chr4_1:80045306-80045325 Msa0576020:intron 50.0%
!!! TGTTTTGACCTCCGAAGACG+AGG - chr4_1:80045459-80045478 Msa0576020:intron 50.0%
TCTTGTTACCGCCTCGTCTT+CGG + chr4_1:80045473-80045492 None:intergenic 50.0%
!!! AAAATTTTGTGGCGGACGGC+AGG - chr4_1:80045501-80045520 Msa0576020:intron 50.0%
CAATGGCTGACAGCGGTAAA+CGG - chr4_1:80045670-80045689 Msa0576020:CDS 50.0%
!! TGGTAGCCCTTTGGGACATT+TGG + chr4_1:80045759-80045778 None:intergenic 50.0%
! TGCCTTCTTGGTAGCCCTTT+GGG + chr4_1:80045767-80045786 None:intergenic 50.0%
AGACCATAATGTAGGCGGCT+AGG - chr4_1:80045795-80045814 Msa0576020:intron 50.0%
! GGCGGCTAGGATTTTTATGC+AGG - chr4_1:80045808-80045827 Msa0576020:intron 50.0%
TCGGTGTGTATGTCAGAAGG+GGG - chr4_1:80046022-80046041 Msa0576020:intron 50.0%
TCTACTCAGGGGCTACATAG+AGG - chr4_1:80046801-80046820 Msa0576020:intron 50.0%
GGGCTACATAGAGGCAGTTA+GGG - chr4_1:80046810-80046829 Msa0576020:intron 50.0%
! TTGTGGCTTGTGGCAGGTTA+TGG - chr4_1:80046887-80046906 Msa0576020:intron 50.0%
ACCATCCGTTTCCGCTTCAT+TGG - chr4_1:80046941-80046960 Msa0576020:intron 50.0%
TCCAATGAAGCGGAAACGGA+TGG + chr4_1:80046945-80046964 None:intergenic 50.0%
CTCACATTCACTGGGGAGTT+TGG + chr4_1:80047139-80047158 None:intergenic 50.0%
!! CACAATTGCCGGTTTAGCAC+TGG - chr4_1:80047256-80047275 Msa0576020:intron 50.0%
! ACCATTTAGGTGCTACCTGC+AGG - chr4_1:80047362-80047381 Msa0576020:intron 50.0%
ACCTGCAGGTAGCACCTAAA+TGG + chr4_1:80047366-80047385 None:intergenic 50.0%
!! TTGCTTGACGGACTCAAAGC+TGG - chr4_1:80047441-80047460 Msa0576020:intron 50.0%
CATTGCATAGCCAAGACCCT+TGG + chr4_1:80047757-80047776 None:intergenic 50.0%
GTACATACAGGTGGCCTCTT+AGG - chr4_1:80049425-80049444 Msa0576020:CDS 50.0%
GTATGACAAGGTCGATCAGC+TGG - chr4_1:80049451-80049470 Msa0576020:CDS 50.0%
GATCAGCTGGGTTCCTTTGT+GGG - chr4_1:80049464-80049483 Msa0576020:CDS 50.0%
ATCAGCTGGGTTCCTTTGTG+GGG - chr4_1:80049465-80049484 Msa0576020:CDS 50.0%
TGGGTTCCTTTGTGGGGAAT+TGG - chr4_1:80049471-80049490 Msa0576020:CDS 50.0%
TCGTTGCCAATTCCCCACAA+AGG + chr4_1:80049480-80049499 None:intergenic 50.0%
TGTGGGGAATTGGCAACGAA+TGG - chr4_1:80049481-80049500 Msa0576020:CDS 50.0%
GAATCTGTTCCCAGGCAAGA+TGG - chr4_1:80049512-80049531 Msa0576020:CDS 50.0%
GTTCCCAGGCAAGATGGAAT+TGG - chr4_1:80049518-80049537 Msa0576020:CDS 50.0%
! GTGGCATTTAGGGTGGGTAG+AGG + chr4_1:80042661-80042680 None:intergenic 55.0%
GCCCATGAAGGAGCTGTGTA+TGG + chr4_1:80042808-80042827 None:intergenic 55.0%
CTGAAGCGCGACGATCTTTC+TGG - chr4_1:80042934-80042953 Msa0576020:three_prime_UTR 55.0%
ATATGGCCTCCTCCCTTGGT+TGG + chr4_1:80043367-80043386 None:intergenic 55.0%
CCTCTCCTGCCTCACGAATT+TGG + chr4_1:80044221-80044240 None:intergenic 55.0%
CCAAATTCGTGAGGCAGGAG+AGG - chr4_1:80044218-80044237 Msa0576020:intron 55.0%
ACAGCTCTATTGTCCTCCCC+TGG - chr4_1:80044321-80044340 Msa0576020:intron 55.0%
CAGCTCTATTGTCCTCCCCT+GGG - chr4_1:80044322-80044341 Msa0576020:intron 55.0%
TTCCTCTGTGCGCACCAACA+GGG + chr4_1:80045323-80045342 None:intergenic 55.0%
TTTGACCTCCGAAGACGAGG+CGG - chr4_1:80045462-80045481 Msa0576020:intron 55.0%
ATCACATGGATGCCACGCGT+CGG - chr4_1:80045526-80045545 Msa0576020:intron 55.0%
TCTATTGTGGCGGTGCGTGT+TGG - chr4_1:80045558-80045577 Msa0576020:intron 55.0%
CTATTGTGGCGGTGCGTGTT+GGG - chr4_1:80045559-80045578 Msa0576020:intron 55.0%
TATTGTGGCGGTGCGTGTTG+GGG - chr4_1:80045560-80045579 Msa0576020:intron 55.0%
! TGCGTGTTGGGGTGTCTACT+GGG - chr4_1:80045571-80045590 Msa0576020:intron 55.0%
GCGAAAGCAATGGCTGACAG+CGG - chr4_1:80045663-80045682 Msa0576020:CDS 55.0%
GTCCCAAAGGGCTACCAAGA+AGG - chr4_1:80045762-80045781 Msa0576020:intron 55.0%
! CTGCCTTCTTGGTAGCCCTT+TGG + chr4_1:80045768-80045787 None:intergenic 55.0%
GGAGCAAGGCCCTCTAAATC+AGG - chr4_1:80045829-80045848 Msa0576020:intron 55.0%
TTGGTGAGGATCTTGGGGAC+TGG - chr4_1:80046456-80046475 Msa0576020:intron 55.0%
CCAAGCTTCTTGCCACCAAG+CGG - chr4_1:80046532-80046551 Msa0576020:intron 55.0%
CAAGCTTCTTGCCACCAAGC+GGG - chr4_1:80046533-80046552 Msa0576020:intron 55.0%
ATCAAGCAGATCCCGCTTGG+TGG + chr4_1:80046547-80046566 None:intergenic 55.0%
ACGATCAAGCAGATCCCGCT+TGG + chr4_1:80046550-80046569 None:intergenic 55.0%
GGGGCTACATAGAGGCAGTT+AGG - chr4_1:80046809-80046828 Msa0576020:intron 55.0%
GCGGAAACGGATGGTTGCTA+AGG + chr4_1:80046936-80046955 None:intergenic 55.0%
TGCTTACAGGCCAAGGGTCT+TGG - chr4_1:80047744-80047763 Msa0576020:intron 55.0%
GAAGATAGGAGAGACGGGCA+CGG + chr4_1:80048707-80048726 None:intergenic 55.0%
AAGCAGCCTTACCGCTGAGA+AGG + chr4_1:80049343-80049362 None:intergenic 55.0%
GGCCACCTGTATGTACGAAG+AGG + chr4_1:80049421-80049440 None:intergenic 55.0%
CGATCAGCTGGGTTCCTTTG+TGG - chr4_1:80049463-80049482 Msa0576020:CDS 55.0%
GACCAAGATCCCACCCTCAC+TGG - chr4_1:80043144-80043163 Msa0576020:CDS 60.0%
TGCCAGTGAGGGTGGGATCT+TGG + chr4_1:80043149-80043168 None:intergenic 60.0%
AGCTCACCAACCAAGGGAGG+AGG - chr4_1:80043358-80043377 Msa0576020:intron 60.0%
CTTCCTCTGTGCGCACCAAC+AGG + chr4_1:80045324-80045343 None:intergenic 60.0%
TGTTACCGCCTCGTCTTCGG+AGG + chr4_1:80045470-80045489 None:intergenic 60.0%
TGGATGCCACGCGTCGGAAA+CGG - chr4_1:80045532-80045551 Msa0576020:intron 60.0%
AGACTTCCGTTTCCGACGCG+TGG + chr4_1:80045541-80045560 None:intergenic 60.0%
! GTGCGTGTTGGGGTGTCTAC+TGG - chr4_1:80045570-80045589 Msa0576020:intron 60.0%
! TTGGGGTGTCTACTGGGCTC+TGG - chr4_1:80045577-80045596 Msa0576020:intron 60.0%
! TGGGGTGTCTACTGGGCTCT+GGG - chr4_1:80045578-80045597 Msa0576020:intron 60.0%
GGTTGCTGGCGCGAAAGCAA+TGG - chr4_1:80045653-80045672 Msa0576020:intron 60.0%
TGGCTGACAGCGGTAAACGG+TGG - chr4_1:80045673-80045692 Msa0576020:CDS 60.0%
! CCGCTTGGTGGCAAGAAGCT+TGG + chr4_1:80046535-80046554 None:intergenic 60.0%
! TCCAGTGGGGGCACAATTGC+CGG - chr4_1:80047245-80047264 Msa0576020:intron 60.0%
CGGAGAATGCATGCACCTGC+AGG + chr4_1:80047380-80047399 None:intergenic 60.0%
GACCCTGTTGGTGCGCACAG+AGG - chr4_1:80045318-80045337 Msa0576020:intron 65.0%
GCGGACGGCAGGACATCACA+TGG - chr4_1:80045512-80045531 Msa0576020:intron 65.0%
ACCGGCAATTGTGCCCCCAC+TGG + chr4_1:80047249-80047268 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80042563 80049996 80042563 ID=Msa0576020;Name=Msa0576020
chr4_1 mRNA 80042563 80049996 80042563 ID=Msa0576020-mRNA-1;Parent=Msa0576020;Name=Msa0576020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=176|1|1|1|1|1|7|443|388
chr4_1 exon 80042563 80043210 80042563 ID=Msa0576020-mRNA-1:exon:28572;Parent=Msa0576020-mRNA-1
chr4_1 exon 80044709 80044806 80044709 ID=Msa0576020-mRNA-1:exon:28571;Parent=Msa0576020-mRNA-1
chr4_1 exon 80045062 80045175 80045062 ID=Msa0576020-mRNA-1:exon:28570;Parent=Msa0576020-mRNA-1
chr4_1 exon 80045252 80045309 80045252 ID=Msa0576020-mRNA-1:exon:28569;Parent=Msa0576020-mRNA-1
chr4_1 exon 80045657 80045749 80045657 ID=Msa0576020-mRNA-1:exon:28568;Parent=Msa0576020-mRNA-1
chr4_1 exon 80049135 80049226 80049135 ID=Msa0576020-mRNA-1:exon:28567;Parent=Msa0576020-mRNA-1
chr4_1 exon 80049314 80049996 80049314 ID=Msa0576020-mRNA-1:exon:28566;Parent=Msa0576020-mRNA-1
chr4_1 five_prime_UTR 80049821 80049996 80049821 ID=Msa0576020-mRNA-1:five_prime_utr;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80049314 80049820 80049314 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80049135 80049226 80049135 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80045657 80045749 80045657 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80045252 80045309 80045252 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80045062 80045175 80045062 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80044709 80044806 80044709 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 CDS 80043006 80043210 80043006 ID=Msa0576020-mRNA-1:cds;Parent=Msa0576020-mRNA-1
chr4_1 three_prime_UTR 80042563 80043005 80042563 ID=Msa0576020-mRNA-1:three_prime_utr;Parent=Msa0576020-mRNA-1
Gene Sequence

>Msa0576020

ATGTATGGTCATCTGAAGAAGCAAGTCTCAACAGTGATGGCGGGGTTTGAGTTTCTGAGTGTGAAGCCATACACAGCTCCTTCATGGGCATCCTACCTAGACCCCATACCTTCTCATATTGTATCTCTTGCCCATCTTCCGACTCCGATTCACAGATGGAAGCTTCCGAACCTGCCAGCAAATACAGAAGTGTGGCTGAAGCGCGACGATCTTTCTGGAATGCAATTGAGTGGAAACAAAGTGCGGAAATTGGAGTTCTTGATGGCCGATGCAATTGCTGAATCCGCTGATTCTGTTATTACAATTGGAGGCATCCAAAGTAATCACTGTCGTGCCACTGCCGTTGCTGCTAAGTATTTGAGTCTCGATCCTTTCCTTATACTCCGCACTTCTAAGCATCTCGTTGACCAAGATCCCACCCTCACTGGCAATCTTCTTGTTGAGCGTTTGATTGGAGCTCACCTTCAACTTATATCCAAAGAAGAATATTCACAAATTGGAAGTGTCACACTTGCCAACCTCCTCAAAGAAAAGCTCACCAACCAAGGGAGGAGGCCATATGTTATTCCTGTTGGCGGATCAAACTCTCTCGGAACATGGGGCTACATAGAGGCAGTTAGGGAGATTGAGCTGCAGATTCAAAGTGGAACAAGCAATGTCAAGTTTGATGATATTGTTGTGGCTTGTGGCAGTGGGGGCACAATTGCCGGTTTAGCACTGGGTTCATCATTGAGTAGCTTGAAAGCAAGGGTGCATGCATTCTCCGTTTGTGATGACCCGGATTACTTCCACAACTTTGTTCAAGGCTTGCTTGACGGACTCAAAGCTGGTGTTAGCTCTAGAGATATTGTCCACATACAAAATGCCAAGGGTCTTGGCTATGCAATGAACACTTCTGAGGAGCTTAGTTTTGTAAAAGAAGTTGCTGAAGCTACAGGTGTTGTTCTTGACCCGGTATACAGCGGTAAGGCTGCTTATGCAATGCTGAAAGATATGAATGAAAATCCAAAGAAATGGGAAGGAAGGAAGATCCTCTTCGTACATACAGGTGGCCTCTTAGGATTGTATGACAAGGTCGATCAGCTGGGTTCCTTTGTGGGGAATTGGCAACGAATGGATGTTAATGAATCTGTTCCCAGGCAAGATGGAATTGGAAAGATGTTCTAG

Protein sequence

>Msa0576020

MYGHLKKQVSTVMAGFEFLSVKPYTAPSWASYLDPIPSHIVSLAHLPTPIHRWKLPNLPANTEVWLKRDDLSGMQLSGNKVRKLEFLMADAIAESADSVITIGGIQSNHCRATAVAAKYLSLDPFLILRTSKHLVDQDPTLTGNLLVERLIGAHLQLISKEEYSQIGSVTLANLLKEKLTNQGRRPYVIPVGGSNSLGTWGYIEAVREIELQIQSGTSNVKFDDIVVACGSGGTIAGLALGSSLSSLKARVHAFSVCDDPDYFHNFVQGLLDGLKAGVSSRDIVHIQNAKGLGYAMNTSEELSFVKEVAEATGVVLDPVYSGKAAYAMLKDMNENPKKWEGRKILFVHTGGLLGLYDKVDQLGSFVGNWQRMDVNESVPRQDGIGKMF*