AlfalfaGEDB | Msa1407020

M. sativa cultivar zhongmu-4 / Msa1407020

KEGG: K09286|K14517
GO: GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009864 GO:0009867 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407020	AEQ64867.1	99.301	143	1	0	1	143	1	143	4.89e-97	291

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407020	sp\|O80337\|EF100_ARATH	43.902	123	47	3	1	101	1	123	1.11e-24	99.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407020	G8EVZ8	99.301	143	1	0	1	143	1	143	2.34e-97	291

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0184410	Msa1407020	0.804602	1.996481e-49	-8.615850e-47
Msa0408340	Msa1407020	0.803025	4.244172e-49	-8.615850e-47
Msa1206680	Msa1407020	0.926000	8.538995e-91	-8.615850e-47
Msa1360420	Msa1407020	0.806992	6.282165e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407020	MtrunA17_Chr4g0055761	99.301	143	1	0	1	143	1	143	6.46e-101	290
Msa1407020	MtrunA17_Chr8g0335331	59.574	47	16	2	43	88	37	81	1.07e-11	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407020	AT4G17500.1	43.902	123	47	3	1	101	1	123	1.12e-25	99.0
Msa1407020	AT5G47220.1	34.028	144	63	4	1	141	1	115	5.69e-16	72.8
Msa1407020	AT2G44840.1	52.830	53	23	1	38	90	12	62	2.66e-12	62.8

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Find 59 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGATGAGACACTTTC+GGG	0.401330	tig0023248:-92536	None:intergenic
AAATGTTTCGGGTAATACCC+GGG	0.585648	tig0023248:+92352	Msa1407020:CDS
AATGACGGTGAAACCGGAGC+CGG	0.545739	tig0023248:+92568	Msa1407020:CDS
ACCAAAGGCCACAACATGTA+CGG	0.547777	tig0023248:+92239	None:intergenic
ACCCATGTTTAAGTGACAAT+TGG	0.355880	tig0023248:+92408	Msa1407020:CDS
ACCGGAGCCGGATGTTATGC+CGG	0.509833	tig0023248:+92580	Msa1407020:CDS
ACCGGCATAACATCCGGCTC+CGG	0.525114	tig0023248:-92581	None:intergenic
ACCGGTAGGACATTCTCCAC+CGG	0.602856	tig0023248:-92599	None:intergenic
AGAAGATGATTCTGAAGATA+TGG	0.403547	tig0023248:+92448	Msa1407020:CDS
AGAGGGACCAAAAGCTGCTC+CGG	0.514715	tig0023248:+92649	Msa1407020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAGAATCCGAATTTATATT+CGG	+	tig0023248:92320-92339	Msa1407020:CDS	30.0%
TCTGAAGATATGGTACTTTA+CGG	+	tig0023248:92458-92477	Msa1407020:CDS	30.0%
GTATTACCCGAAACATTTGT+TGG	-	tig0023248:92350-92369	None:intergenic	35.0%
ACCCATGTTTAAGTGACAAT+TGG	+	tig0023248:92408-92427	Msa1407020:CDS	35.0%
CCCATGTTTAAGTGACAATT+GGG	+	tig0023248:92409-92428	Msa1407020:CDS	35.0%
CCATGTTTAAGTGACAATTG+GGG	+	tig0023248:92410-92429	Msa1407020:CDS	35.0%
TCAGAATCATCTTCTTTGAG+TGG	-	tig0023248:92443-92462	None:intergenic	35.0%
AAAAACCGATGAGACACTTT+CGG	-	tig0023248:92540-92559	None:intergenic	35.0%
AGAGTCTAAAAGGGCAAGAT+CGG	-	tig0023248:92282-92301	None:intergenic	40.0%
ATTCGGATTCTCCTAACAAG+TGG	-	tig0023248:92313-92332	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023248	gene	92254	92733	92254	ID=Msa1407020;Name=Msa1407020
tig0023248	mRNA	92254	92733	92254	ID=Msa1407020-mRNA-1;Parent=Msa1407020;Name=Msa1407020-mRNA-1;_AED=0.04;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|160
tig0023248	exon	92254	92733	92254	ID=Msa1407020-mRNA-1:exon:24836;Parent=Msa1407020-mRNA-1
tig0023248	CDS	92254	92733	92254	ID=Msa1407020-mRNA-1:cds;Parent=Msa1407020-mRNA-1

Gene Sequence

>Msa1407020

ATGTACGGAAATAGTAATTTTGATTCCGATCTTGCCCTTTTAGACTCTATTCGCCGCCACTTGTTAGGAGAATCCGAATTTATATTCGGTGCTCCAACAAATGTTTCGGGTAATACCCGGGTTTTCTCTCGGAGCTCCAGTTTCAGCAGTTTATACCCATGTTTAAGTGACAATTGGGGTGAACTACCACTCAAAGAAGATGATTCTGAAGATATGGTACTTTACGGCGTCCTTCGCGACGCCGTAAATGTTGGGTGGATTCCGTCTCTTGAAGTTGGGTCACCCGAAAGTGTCTCATCGGTTTTTCCGTTAGAAATGACGGTGAAACCGGAGCCGGATGTTATGCCGGTGGAGAATGTCCTACCGGTGGCTTCTACGGCGGAGCAAGTGGTTCCAGAGGGACCAAAAGCTGCTCCGGTGAAAGGAAAAACACTACCGCGGCGTGAGACAACGGCCATGGGGGAAATTCGCGGCGGAGAT

Protein sequence

>Msa1407020

MYGNSNFDSDLALLDSIRRHLLGESEFIFGAPTNVSGNTRVFSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWIPSLEVGSPESVSSVFPLEMTVKPEPDVMPVENVLPVASTAEQVVPEGPKAAPVKGKTLPRRETTAMGEIRGGD