Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1360420 | XP_013466038.1 | 98.092 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1058 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1360420 | sp|Q9LLB0|AOS2_SOLLC | 66.216 | 518 | 162 | 5 | 5 | 522 | 6 | 510 | 0.0 | 719 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1360420 | Q7X9B4 | 98.092 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1058 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0015670 | Msa1360420 | 0.824710 | 6.964637e-54 | -8.615850e-47 |
Msa0030480 | Msa1360420 | 0.802062 | 6.704085e-49 | -8.615850e-47 |
Msa0046560 | Msa1360420 | 0.803768 | 2.977893e-49 | -8.615850e-47 |
Msa0051050 | Msa1360420 | 0.972298 | 1.540931e-134 | -8.615850e-47 |
Msa0089980 | Msa1360420 | 0.802586 | 5.228468e-49 | -8.615850e-47 |
Msa0090010 | Msa1360420 | 0.802683 | 4.993089e-49 | -8.615850e-47 |
Msa0092410 | Msa1360420 | 0.809307 | 2.018781e-50 | -8.615850e-47 |
Msa0101240 | Msa1360420 | 0.988698 | 4.747439e-175 | -8.615850e-47 |
Msa0112270 | Msa1360420 | 0.826476 | 2.657401e-54 | -8.615850e-47 |
Msa1353890 | Msa1360420 | 0.807022 | 6.190975e-50 | -8.615850e-47 |
Msa1360420 | Msa1366550 | 0.852775 | 3.700808e-61 | -8.615850e-47 |
Msa1360420 | Msa1371590 | 0.813512 | 2.465198e-51 | -8.615850e-47 |
Msa1360420 | Msa1376370 | 0.812347 | 4.437587e-51 | -8.615850e-47 |
Msa1360420 | Msa1379700 | 0.819909 | 9.066364e-53 | -8.615850e-47 |
Msa1360420 | Msa1388090 | 0.850411 | 1.728479e-60 | -8.615850e-47 |
Msa1360420 | Msa1399260 | 0.888194 | 7.326597e-73 | -8.615850e-47 |
Msa1360420 | Msa1400340 | 0.825587 | 4.322486e-54 | -8.615850e-47 |
Msa1360420 | Msa1407020 | 0.806992 | 6.282165e-50 | -8.615850e-47 |
Msa1360420 | Msa1408180 | 0.807715 | 4.414679e-50 | -8.615850e-47 |
Msa1360420 | Msa1409490 | 0.839683 | 1.368112e-57 | -8.615850e-47 |
Msa1360420 | Msa1416730 | 0.813205 | 2.879838e-51 | -8.615850e-47 |
Msa1360420 | Msa1417050 | 0.801190 | 1.012211e-48 | -8.615850e-47 |
Msa1360420 | Msa1424630 | 0.840855 | 6.761813e-58 | -8.615850e-47 |
Msa1360420 | Msa1425090 | 0.812884 | 3.386842e-51 | -8.615850e-47 |
Msa1360420 | Msa1430550 | 0.826191 | 3.105882e-54 | -8.615850e-47 |
Msa1360420 | Msa1439650 | 0.833834 | 4.247605e-56 | -8.615850e-47 |
Msa1360420 | Msa1441270 | 0.814175 | 1.761309e-51 | -8.615850e-47 |
Msa1360420 | Msa1446330 | 0.819225 | 1.298442e-52 | -8.615850e-47 |
Msa1360420 | Msa1448980 | 0.808581 | 2.886786e-50 | -8.615850e-47 |
Msa1360420 | Msa1453360 | 0.810501 | 1.117189e-50 | -8.615850e-47 |
Msa1360420 | Msa1458340 | 0.807417 | 5.106481e-50 | -8.615850e-47 |
Msa1360420 | Msa1459100 | 0.809639 | 1.712823e-50 | -8.615850e-47 |
Msa1360420 | Msa1461370 | 0.807010 | 6.229237e-50 | -8.615850e-47 |
Msa1360420 | Msa1463030 | 0.866596 | 2.540373e-65 | -8.615850e-47 |
Msa0614380 | Msa1360420 | 0.849851 | 2.479201e-60 | -8.615850e-47 |
Msa0615290 | Msa1360420 | 0.823469 | 1.361824e-53 | -8.615850e-47 |
Msa0619050 | Msa1360420 | 0.806829 | 6.801090e-50 | -8.615850e-47 |
Msa0626270 | Msa1360420 | 0.821184 | 4.621801e-53 | -8.615850e-47 |
Msa0626460 | Msa1360420 | 0.814427 | 1.549607e-51 | -8.615850e-47 |
Msa0630940 | Msa1360420 | 0.837394 | 5.334418e-57 | -8.615850e-47 |
Msa0657660 | Msa1360420 | 0.827056 | 1.930909e-54 | -8.615850e-47 |
Msa0662940 | Msa1360420 | 0.802340 | 5.878228e-49 | -8.615850e-47 |
Msa0664540 | Msa1360420 | 0.825606 | 4.278150e-54 | -8.615850e-47 |
Msa0669180 | Msa1360420 | 0.815307 | 9.886296e-52 | -8.615850e-47 |
Msa0678040 | Msa1360420 | 0.826131 | 3.209797e-54 | -8.615850e-47 |
Msa0696850 | Msa1360420 | 0.837543 | 4.886553e-57 | -8.615850e-47 |
Msa0696860 | Msa1360420 | 0.819851 | 9.347148e-53 | -8.615850e-47 |
Msa0697590 | Msa1360420 | 0.810599 | 1.063906e-50 | -8.615850e-47 |
Msa0698290 | Msa1360420 | 0.803808 | 2.921090e-49 | -8.615850e-47 |
Msa0708310 | Msa1360420 | 0.805732 | 1.158302e-49 | -8.615850e-47 |
Msa0713680 | Msa1360420 | 0.809269 | 2.056796e-50 | -8.615850e-47 |
Msa0715420 | Msa1360420 | 0.851214 | 1.026930e-60 | -8.615850e-47 |
Msa0718800 | Msa1360420 | 0.815436 | 9.252434e-52 | -8.615850e-47 |
Msa0738110 | Msa1360420 | 0.810516 | 1.108683e-50 | -8.615850e-47 |
Msa0751260 | Msa1360420 | 0.818023 | 2.433098e-52 | -8.615850e-47 |
Msa0754770 | Msa1360420 | 0.859494 | 3.979656e-63 | -8.615850e-47 |
Msa0758250 | Msa1360420 | 0.884800 | 1.406918e-71 | -8.615850e-47 |
Msa0786980 | Msa1360420 | 0.811481 | 6.852966e-51 | -8.615850e-47 |
Msa0796630 | Msa1360420 | 0.856450 | 3.191983e-62 | -8.615850e-47 |
Msa0798310 | Msa1360420 | 0.825497 | 4.537880e-54 | -8.615850e-47 |
Msa0799620 | Msa1360420 | 0.861186 | 1.224034e-63 | -8.615850e-47 |
Msa0827820 | Msa1360420 | 0.803773 | 2.970208e-49 | -8.615850e-47 |
Msa0829650 | Msa1360420 | 0.817491 | 3.208524e-52 | -8.615850e-47 |
Msa0833890 | Msa1360420 | 0.842757 | 2.127984e-58 | -8.615850e-47 |
Msa0834180 | Msa1360420 | 0.847364 | 1.211893e-59 | -8.615850e-47 |
Msa0837870 | Msa1360420 | 0.853903 | 1.756390e-61 | -8.615850e-47 |
Msa0122740 | Msa1360420 | 0.812789 | 3.552082e-51 | -8.615850e-47 |
Msa0128430 | Msa1360420 | 0.801179 | 1.017208e-48 | -8.615850e-47 |
Msa0156300 | Msa1360420 | 0.801420 | 9.079234e-49 | -8.615850e-47 |
Msa0184410 | Msa1360420 | 0.831194 | 1.916807e-55 | -8.615850e-47 |
Msa0187830 | Msa1360420 | 0.816248 | 6.099376e-52 | -8.615850e-47 |
Msa0194890 | Msa1360420 | 0.807418 | 5.104969e-50 | -8.615850e-47 |
Msa0211200 | Msa1360420 | 0.878660 | 2.346368e-69 | -8.615850e-47 |
Msa0234090 | Msa1360420 | 0.807534 | 4.824156e-50 | -8.615850e-47 |
Msa1266490 | Msa1360420 | 0.835797 | 1.361212e-56 | -8.615850e-47 |
Msa1268530 | Msa1360420 | 0.821317 | 4.305528e-53 | -8.615850e-47 |
Msa1284990 | Msa1360420 | 0.810967 | 8.858098e-51 | -8.615850e-47 |
Msa1334490 | Msa1360420 | 0.808089 | 3.675703e-50 | -8.615850e-47 |
Msa1341840 | Msa1360420 | 0.812642 | 3.825892e-51 | -8.615850e-47 |
Msa0408340 | Msa1360420 | 0.847133 | 1.402450e-59 | -8.615850e-47 |
Msa0432670 | Msa1360420 | 0.819328 | 1.230133e-52 | -8.615850e-47 |
Msa1034700 | Msa1360420 | 0.852497 | 4.439731e-61 | -8.615850e-47 |
Msa1043120 | Msa1360420 | 0.845013 | 5.292234e-59 | -8.615850e-47 |
Msa1043330 | Msa1360420 | 0.804705 | 1.900317e-49 | -8.615850e-47 |
Msa1063370 | Msa1360420 | 0.832526 | 8.990595e-56 | -8.615850e-47 |
Msa1074540 | Msa1360420 | 0.818432 | 1.966644e-52 | -8.615850e-47 |
Msa1084640 | Msa1360420 | 0.821243 | 4.478830e-53 | -8.615850e-47 |
Msa0244890 | Msa1360420 | 0.840912 | 6.531627e-58 | -8.615850e-47 |
Msa0244900 | Msa1360420 | 0.828024 | 1.131186e-54 | -8.615850e-47 |
Msa0263230 | Msa1360420 | 0.803470 | 3.432849e-49 | -8.615850e-47 |
Msa0283490 | Msa1360420 | 0.829285 | 5.608067e-55 | -8.615850e-47 |
Msa0290680 | Msa1360420 | 0.822362 | 2.467476e-53 | -8.615850e-47 |
Msa0305840 | Msa1360420 | 0.807457 | 5.008545e-50 | -8.615850e-47 |
Msa0323880 | Msa1360420 | 0.808958 | 2.397894e-50 | -8.615850e-47 |
Msa0328730 | Msa1360420 | 0.841593 | 4.326469e-58 | -8.615850e-47 |
Msa0344930 | Msa1360420 | 0.819774 | 9.732784e-53 | -8.615850e-47 |
Msa1108720 | Msa1360420 | 0.832733 | 7.987837e-56 | -8.615850e-47 |
Msa1131050 | Msa1360420 | 0.813520 | 2.455783e-51 | -8.615850e-47 |
Msa1152410 | Msa1360420 | 0.837794 | 4.212902e-57 | -8.615850e-47 |
Msa1155900 | Msa1360420 | 0.802591 | 5.215975e-49 | -8.615850e-47 |
Msa1156950 | Msa1360420 | 0.814505 | 1.488660e-51 | -8.615850e-47 |
Msa1219900 | Msa1360420 | 0.821876 | 3.197415e-53 | -8.615850e-47 |
Msa1220010 | Msa1360420 | 0.815499 | 8.961931e-52 | -8.615850e-47 |
Msa0501410 | Msa1360420 | 0.817624 | 2.993598e-52 | -8.615850e-47 |
Msa0527260 | Msa1360420 | 0.818220 | 2.196038e-52 | -8.615850e-47 |
Msa0534400 | Msa1360420 | 0.803466 | 3.440495e-49 | -8.615850e-47 |
Msa0543140 | Msa1360420 | 0.801914 | 7.189756e-49 | -8.615850e-47 |
Msa0572750 | Msa1360420 | 0.847118 | 1.415271e-59 | -8.615850e-47 |
Msa0579660 | Msa1360420 | 0.806768 | 7.006621e-50 | -8.615850e-47 |
Msa0590640 | Msa1360420 | 0.824090 | 9.741996e-54 | -8.615850e-47 |
Msa0597770 | Msa1360420 | 0.805267 | 1.449954e-49 | -8.615850e-47 |
Msa0599140 | Msa1360420 | 0.803377 | 3.588471e-49 | -8.615850e-47 |
Msa0860250 | Msa1360420 | 0.803998 | 2.667022e-49 | -8.615850e-47 |
Msa0865970 | Msa1360420 | 0.889874 | 1.637566e-73 | -8.615850e-47 |
Msa0866070 | Msa1360420 | 0.888969 | 3.683138e-73 | -8.615850e-47 |
Msa0867870 | Msa1360420 | 0.800970 | 1.122605e-48 | -8.615850e-47 |
Msa0899970 | Msa1360420 | 0.804063 | 2.585151e-49 | -8.615850e-47 |
Msa0903170 | Msa1360420 | 0.806961 | 6.379259e-50 | -8.615850e-47 |
Msa0938990 | Msa1360420 | 0.812347 | 4.437587e-51 | -8.615850e-47 |
Msa0972480 | Msa1360420 | 0.800963 | 1.126073e-48 | -8.615850e-47 |
Msa0975930 | Msa1360420 | 0.804084 | 2.559859e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1360420 | MtrunA17_Chr1g0154381 | 98.092 | 524 | 10 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1058 |
Msa1360420 | MtrunA17_Chr3g0141271 | 71.915 | 470 | 130 | 2 | 57 | 524 | 90 | 559 | 0.0 | 707 |
Msa1360420 | MtrunA17_Chr4g0034141 | 48.125 | 480 | 243 | 4 | 48 | 523 | 2 | 479 | 1.79e-167 | 483 |
Msa1360420 | MtrunA17_Chr1g0162571 | 50.418 | 478 | 229 | 6 | 52 | 523 | 8 | 483 | 8.00e-167 | 481 |
Msa1360420 | MtrunA17_Chr2g0322321 | 39.787 | 470 | 269 | 5 | 56 | 522 | 21 | 479 | 1.89e-120 | 362 |
Msa1360420 | MtrunA17_Chr1g0162591 | 48.750 | 240 | 121 | 2 | 283 | 522 | 4 | 241 | 2.71e-82 | 256 |
Msa1360420 | MtrunA17_Chr1g0162581 | 45.418 | 251 | 131 | 4 | 40 | 285 | 2 | 251 | 3.50e-68 | 219 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1360420 | AT5G42650.1 | 60.077 | 521 | 204 | 3 | 4 | 524 | 2 | 518 | 0.0 | 649 |
Msa1360420 | AT4G15440.1 | 40.489 | 368 | 215 | 4 | 137 | 501 | 4 | 370 | 3.20e-93 | 289 |
Find 118 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATTGATTTCAAGACTTT+TGG | 0.223131 | tig0017060:-50270 | Msa1360420:CDS |
CATGACGACTACGTGATTTA+AGG | 0.223634 | tig0017060:+51179 | None:intergenic |
TTCTTGAGCTGTTCATGTTT+TGG | 0.234640 | tig0017060:+51217 | None:intergenic |
CCGATCCATTTCATCAAATT+AGG | 0.234831 | tig0017060:+50710 | None:intergenic |
CCACCGGTTCCATTACAATT+TGG | 0.257621 | tig0017060:-50545 | Msa1360420:CDS |
TACAATTTGGAAGAGCAAAA+AGG | 0.266309 | tig0017060:-50532 | Msa1360420:CDS |
CGTAAAATCCCTGGTGACTA+TGG | 0.271642 | tig0017060:-51538 | Msa1360420:CDS |
TCTGAAACTGAGGATCTTAT+AGG | 0.272458 | tig0017060:+51616 | None:intergenic |
ACAGTTGGAGATTGAGATTC+TGG | 0.272740 | tig0017060:+50326 | None:intergenic |
GTGATTGAAAATCATGAAAA+TGG | 0.293983 | tig0017060:-50503 | Msa1360420:CDS |
GAGAGTCAACTTGCTGAAAA+TGG | 0.300576 | tig0017060:-51109 | Msa1360420:CDS |
AAACATGTGCTTTGGTCTAA+TGG | 0.336037 | tig0017060:-50350 | Msa1360420:CDS |
CAAGTTGGAAATTCACCTTT+AGG | 0.336124 | tig0017060:-50209 | Msa1360420:CDS |
AAGAAAGGTGAATTGTTGTT+AGG | 0.339578 | tig0017060:-50470 | Msa1360420:CDS |
AAAAGAAATCATAAAGTCTT+TGG | 0.340810 | tig0017060:+50855 | None:intergenic |
ATAGTCTAAACGGTCTTTGT+AGG | 0.357496 | tig0017060:+51498 | None:intergenic |
GTTAGGTCCAGTACTGAAAC+TGG | 0.365669 | tig0017060:-50951 | Msa1360420:CDS |
AGTCCAAGTTCGGTGTCAAC+AGG | 0.376332 | tig0017060:+51013 | None:intergenic |
TCTTTCTTAATGAGCCGAAA+TGG | 0.384153 | tig0017060:+50881 | None:intergenic |
AACGTAGTTGTACTCCTTGA+TGG | 0.385691 | tig0017060:-51367 | Msa1360420:CDS |
TTTGCTCTTCCAAATTGTAA+TGG | 0.388470 | tig0017060:+50536 | None:intergenic |
TCAAGGAGTACAACTACGTT+AGG | 0.399517 | tig0017060:+51370 | None:intergenic |
TTCTTGAACCGTGCTTTGTT+CGG | 0.407853 | tig0017060:-51043 | Msa1360420:CDS |
CTATAACATGACTGAAACTC+TGG | 0.418932 | tig0017060:+51151 | None:intergenic |
AACCCTGTTGACACCGAACT+TGG | 0.419339 | tig0017060:-51016 | Msa1360420:CDS |
CTCGAGGAAGCAGAGCGTTT+AGG | 0.429148 | tig0017060:-50812 | Msa1360420:CDS |
TTAGGATCTTTAGTAGCAAA+AGG | 0.430684 | tig0017060:+50440 | None:intergenic |
AATTGTTGAAACATGTGCTT+TGG | 0.436664 | tig0017060:-50358 | Msa1360420:CDS |
TTCGATGCGTCGAAGAGGAC+GGG | 0.442058 | tig0017060:+51334 | None:intergenic |
CTAATTTGATGAAATGGATC+GGG | 0.442169 | tig0017060:-50709 | Msa1360420:CDS |
CTTTCTTAATGAGCCGAAAT+GGG | 0.448393 | tig0017060:+50882 | None:intergenic |
GATAGATTTGTTGGTGATGA+AGG | 0.449657 | tig0017060:-50386 | Msa1360420:CDS |
ATCGGAAGCTTGGTTGTTTG+TGG | 0.457864 | tig0017060:+51562 | None:intergenic |
TGGACCGTCAAGTCCAAGTT+CGG | 0.457945 | tig0017060:+51003 | None:intergenic |
TTTGTTGCAGATAGATTTGT+TGG | 0.462474 | tig0017060:-50395 | Msa1360420:CDS |
GGTTGTAGAAATAGTCTAAA+CGG | 0.463350 | tig0017060:+51488 | None:intergenic |
TGCTGGCGGGGAGATTACTA+TGG | 0.465831 | tig0017060:-50627 | Msa1360420:CDS |
AAATTAGCGACGGAAATTAG+AGG | 0.465886 | tig0017060:-50662 | Msa1360420:CDS |
GGAGATTACTATGGCGGCCA+TGG | 0.473614 | tig0017060:-50618 | Msa1360420:CDS |
GACACCGAACTTGGACTTGA+CGG | 0.474937 | tig0017060:-51007 | Msa1360420:CDS |
CTTCCAAATTGTAATGGAAC+CGG | 0.475194 | tig0017060:+50542 | None:intergenic |
GCGTTTAGGTGTTTCAAAAG+AGG | 0.480545 | tig0017060:-50798 | Msa1360420:CDS |
CCACCAGTGAGTTCTGTAGA+AGG | 0.484397 | tig0017060:+51274 | None:intergenic |
TCTTTGTAGGGTTGGATGAA+AGG | 0.484515 | tig0017060:+51511 | None:intergenic |
GATTCCTTTGAGATTCAAGT+TGG | 0.484812 | tig0017060:-50224 | Msa1360420:CDS |
TCGTGATAAGGTGGTGGAAG+AGG | 0.486006 | tig0017060:+51660 | None:intergenic |
CTAAACGGTCTTTGTAGGGT+TGG | 0.489158 | tig0017060:+51503 | None:intergenic |
GGTGGAGGAACGTCGTGATA+AGG | 0.495151 | tig0017060:+51648 | None:intergenic |
GAATCTCAATCTCCAACTGT+TGG | 0.495729 | tig0017060:-50323 | Msa1360420:CDS |
CTTTGTAGGGTTGGATGAAA+GGG | 0.497717 | tig0017060:+51512 | None:intergenic |
CCTAATTTGATGAAATGGAT+CGG | 0.498399 | tig0017060:-50710 | Msa1360420:CDS |
AATCTCAATCTCCAACTGTT+GGG | 0.502505 | tig0017060:-50322 | Msa1360420:CDS |
AGAGGAGCAATTAGATCTGC+TGG | 0.504448 | tig0017060:-50644 | Msa1360420:CDS |
TTCCGCACTAACGTTCCTCC+TGG | 0.506823 | tig0017060:-51412 | Msa1360420:CDS |
GGTAGGCCCAGTTTCAGTAC+TGG | 0.509236 | tig0017060:+50944 | None:intergenic |
GGTTGTTTGTGGTTGAGAGA+TGG | 0.510021 | tig0017060:+51573 | None:intergenic |
CATTGTTTATTCCCAACAGT+TGG | 0.511671 | tig0017060:+50311 | None:intergenic |
TTAGACTATTTCTACAACCA+AGG | 0.515498 | tig0017060:-51484 | Msa1360420:CDS |
GAATATGCCGTTGATGAAAT+CGG | 0.515909 | tig0017060:-50594 | Msa1360420:CDS |
ACTGGGCCTACCGAAGTTTG+TGG | 0.518134 | tig0017060:-50933 | Msa1360420:CDS |
TAGTCTAAACGGTCTTTGTA+GGG | 0.523147 | tig0017060:+51499 | None:intergenic |
GGATCTTATAGGTGGAAGAA+AGG | 0.524920 | tig0017060:+51627 | None:intergenic |
GAGCAATTAGATCTGCTGGC+GGG | 0.527113 | tig0017060:-50640 | Msa1360420:CDS |
TGAAGTATTCATCACGACCT+TGG | 0.527248 | tig0017060:+51467 | None:intergenic |
GAGATGGAGACTTGGAAAGG+TGG | 0.530805 | tig0017060:+51589 | None:intergenic |
GATAAAACCGATGTCTTCAC+AGG | 0.538925 | tig0017060:-51307 | Msa1360420:CDS |
AGCAATTAGATCTGCTGGCG+GGG | 0.539011 | tig0017060:-50639 | Msa1360420:CDS |
CAAGGAGTACAACTACGTTA+GGG | 0.540708 | tig0017060:+51371 | None:intergenic |
AAAGGGATGCCATAGTCACC+AGG | 0.542937 | tig0017060:+51529 | None:intergenic |
GTGGTTGAGAGATGGAGACT+TGG | 0.545394 | tig0017060:+51581 | None:intergenic |
ATTTCCAACTTGAATCTCAA+AGG | 0.547715 | tig0017060:+50220 | None:intergenic |
CGTGATAAGGTGGTGGAAGA+GGG | 0.548060 | tig0017060:+51661 | None:intergenic |
TGCTGATAATAATGATCAAG+CGG | 0.549573 | tig0017060:-51074 | Msa1360420:CDS |
CTTCCGATCCGTAAAATCCC+TGG | 0.555994 | tig0017060:-51547 | Msa1360420:CDS |
TGTTTGAGGAGATTAGGAGA+AGG | 0.557408 | tig0017060:+51694 | None:intergenic |
CTTCGATGCGTCGAAGAGGA+CGG | 0.557973 | tig0017060:+51333 | None:intergenic |
TGATCTCTTTAGTGAGGTGA+GGG | 0.559767 | tig0017060:+50175 | None:intergenic |
TCTTATAGGTGGAAGAAAGG+TGG | 0.561423 | tig0017060:+51630 | None:intergenic |
AGGGTAATAGCAGGACCTAA+AGG | 0.563300 | tig0017060:+50194 | None:intergenic |
TTGATCTCTTTAGTGAGGTG+AGG | 0.564316 | tig0017060:+50174 | None:intergenic |
AGAAGGAGTTGAAAGAGTAG+AGG | 0.564504 | tig0017060:+51711 | None:intergenic |
CATCAACGGCATATTCTCCA+TGG | 0.564805 | tig0017060:+50601 | None:intergenic |
TAGTGCGGAAGATGGTTGAC+TGG | 0.567027 | tig0017060:+51425 | None:intergenic |
CGATCTTCGATGCGTCGAAG+AGG | 0.569780 | tig0017060:+51329 | None:intergenic |
AGGAACGTTAGTGCGGAAGA+TGG | 0.576272 | tig0017060:+51417 | None:intergenic |
TTTAGGTGTTTCAAAAGAGG+AGG | 0.581669 | tig0017060:-50795 | Msa1360420:CDS |
GGATCGGGCGCGGTGGAGTG+AGG | 0.582337 | tig0017060:-50694 | Msa1360420:CDS |
ATAGAATCTTCCACAAACTT+CGG | 0.583947 | tig0017060:+50923 | None:intergenic |
TCGATGCGTCGAAGAGGACG+GGG | 0.588579 | tig0017060:+51335 | None:intergenic |
TATACCACCGATTTCATCAA+CGG | 0.592868 | tig0017060:+50587 | None:intergenic |
CCAAATTGTAATGGAACCGG+TGG | 0.594525 | tig0017060:+50545 | None:intergenic |
GTTGGGAATAAACAATGTGC+TGG | 0.598250 | tig0017060:-50305 | Msa1360420:CDS |
GGAACGTCGTGATAAGGTGG+TGG | 0.600776 | tig0017060:+51654 | None:intergenic |
TATAGGTGGAAGAAAGGTGG+AGG | 0.604481 | tig0017060:+51633 | None:intergenic |
TTCCTCGGGATTTGCTCTCG+AGG | 0.607265 | tig0017060:-50828 | Msa1360420:CDS |
AGTGAGGTGAGGGTAATAGC+AGG | 0.615642 | tig0017060:+50185 | None:intergenic |
AATCTTCCACAAACTTCGGT+AGG | 0.620192 | tig0017060:+50927 | None:intergenic |
GTCCAAGTTCGGTGTCAACA+GGG | 0.625604 | tig0017060:+51014 | None:intergenic |
ATGAAATGGATCGGGCGCGG+TGG | 0.626352 | tig0017060:-50701 | Msa1360420:CDS |
GGAGGAACGTCGTGATAAGG+TGG | 0.627902 | tig0017060:+51651 | None:intergenic |
GACCAGGAGGAACGTTAGTG+CGG | 0.628753 | tig0017060:+51410 | None:intergenic |
GGTTAACACCGAACAAAGCA+CGG | 0.629486 | tig0017060:+51035 | None:intergenic |
GAAACTGAGGATCTTATAGG+TGG | 0.630333 | tig0017060:+51619 | None:intergenic |
GAAGCTTGATCTCTTTAGTG+AGG | 0.631938 | tig0017060:+50169 | None:intergenic |
TTGATGAAATGGATCGGGCG+CGG | 0.633244 | tig0017060:-50704 | Msa1360420:CDS |
ACACCTTCTACAGAACTCAC+TGG | 0.635223 | tig0017060:-51277 | Msa1360420:CDS |
TTAGGTCCAGTACTGAAACT+GGG | 0.653363 | tig0017060:-50950 | Msa1360420:CDS |
GTTGCATACAAAATTAGCGA+CGG | 0.661214 | tig0017060:-50672 | Msa1360420:CDS |
TGGCGGGGAGATTACTATGG+CGG | 0.671730 | tig0017060:-50624 | Msa1360420:CDS |
TGAGAGATGGAGACTTGGAA+AGG | 0.672847 | tig0017060:+51586 | None:intergenic |
GGAGCAATTAGATCTGCTGG+CGG | 0.676095 | tig0017060:-50641 | Msa1360420:CDS |
CAAAAGTCTTGAAATCAATG+TGG | 0.688379 | tig0017060:+50271 | None:intergenic |
AAGGGATGCCATAGTCACCA+GGG | 0.700881 | tig0017060:+51530 | None:intergenic |
TTCCTCGAGAGCAAATCCCG+AGG | 0.708927 | tig0017060:+50826 | None:intergenic |
CCTTCTACAGAACTCACTGG+TGG | 0.709735 | tig0017060:-51274 | Msa1360420:CDS |
TATGCCGTTGATGAAATCGG+TGG | 0.719714 | tig0017060:-50591 | Msa1360420:CDS |
GTATGTACCTGTGAAGACAT+CGG | 0.723042 | tig0017060:+51300 | None:intergenic |
TGAGCTATGAAAGGACCAGG+AGG | 0.748813 | tig0017060:+51397 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAAATCATAAAGTCTT+TGG | + | tig0017060:51032-51051 | None:intergenic | 20.0% |
!!! | TTTTTCCTAATTTGATGAAA+TGG | - | tig0017060:51169-51188 | Msa1360420:CDS | 20.0% |
!!! | AAATCATGAAAATGGTTTTT+TGG | - | tig0017060:51389-51408 | Msa1360420:CDS | 20.0% |
!! | AAAAGAAATCATAAAGTCTT+TGG | + | tig0017060:51032-51051 | None:intergenic | 20.0% |
!!! | TTTTTCCTAATTTGATGAAA+TGG | - | tig0017060:51169-51188 | Msa1360420:CDS | 20.0% |
!!! | AAATCATGAAAATGGTTTTT+TGG | - | tig0017060:51389-51408 | Msa1360420:CDS | 20.0% |
!!! | TAGAGAGTTTTTTAATGCTT+TGG | - | tig0017060:50753-50772 | Msa1360420:CDS | 25.0% |
!!! | AAATGGGTTTTATTTCAGTT+AGG | - | tig0017060:50916-50935 | Msa1360420:CDS | 25.0% |
! | GTGATTGAAAATCATGAAAA+TGG | - | tig0017060:51381-51400 | Msa1360420:CDS | 25.0% |
!!! | AATGGTTTTTTGGTTAAGAA+AGG | - | tig0017060:51399-51418 | Msa1360420:CDS | 25.0% |
!!! | TAGAGAGTTTTTTAATGCTT+TGG | - | tig0017060:50753-50772 | Msa1360420:CDS | 25.0% |
!!! | AAATGGGTTTTATTTCAGTT+AGG | - | tig0017060:50916-50935 | Msa1360420:CDS | 25.0% |
! | GTGATTGAAAATCATGAAAA+TGG | - | tig0017060:51381-51400 | Msa1360420:CDS | 25.0% |
!!! | AATGGTTTTTTGGTTAAGAA+AGG | - | tig0017060:51399-51418 | Msa1360420:CDS | 25.0% |
GGTTGTAGAAATAGTCTAAA+CGG | + | tig0017060:50399-50418 | None:intergenic | 30.0% | |
!! | TTAGACTATTTCTACAACCA+AGG | - | tig0017060:50400-50419 | Msa1360420:CDS | 30.0% |
TGCTGATAATAATGATCAAG+CGG | - | tig0017060:50810-50829 | Msa1360420:CDS | 30.0% | |
TCCAAAAATGGTTCAGAAAT+GGG | - | tig0017060:50900-50919 | Msa1360420:CDS | 30.0% | |
ATAGAATCTTCCACAAACTT+CGG | + | tig0017060:50964-50983 | None:intergenic | 30.0% | |
! | ATAATTTTCGTCTCCCATTT+CGG | - | tig0017060:50989-51008 | Msa1360420:CDS | 30.0% |
! | TGATTTCTTTTATGCTTCCT+CGG | - | tig0017060:51041-51060 | Msa1360420:CDS | 30.0% |
CCTAATTTGATGAAATGGAT+CGG | - | tig0017060:51174-51193 | Msa1360420:CDS | 30.0% | |
CTAATTTGATGAAATGGATC+GGG | - | tig0017060:51175-51194 | Msa1360420:CDS | 30.0% | |
TTTGCTCTTCCAAATTGTAA+TGG | + | tig0017060:51351-51370 | None:intergenic | 30.0% | |
TACAATTTGGAAGAGCAAAA+AGG | - | tig0017060:51352-51371 | Msa1360420:CDS | 30.0% | |
ACAATTTGGAAGAGCAAAAA+GGG | - | tig0017060:51353-51372 | Msa1360420:CDS | 30.0% | |
! | AAGAAAGGTGAATTGTTGTT+AGG | - | tig0017060:51414-51433 | Msa1360420:CDS | 30.0% |
TTAGGATCTTTAGTAGCAAA+AGG | + | tig0017060:51447-51466 | None:intergenic | 30.0% | |
TCTGCTCTATCAAAAATCTT+AGG | + | tig0017060:51465-51484 | None:intergenic | 30.0% | |
! | TAAGATTTTTGATAGAGCAG+AGG | - | tig0017060:51464-51483 | Msa1360420:CDS | 30.0% |
TTTGTTGCAGATAGATTTGT+TGG | - | tig0017060:51489-51508 | Msa1360420:CDS | 30.0% | |
AATTGTTGAAACATGTGCTT+TGG | - | tig0017060:51526-51545 | Msa1360420:CDS | 30.0% | |
CAAAAGTCTTGAAATCAATG+TGG | + | tig0017060:51616-51635 | None:intergenic | 30.0% | |
!!! | CACATTGATTTCAAGACTTT+TGG | - | tig0017060:51614-51633 | Msa1360420:CDS | 30.0% |
!! | TGGTTGTTGAACTTTTTCTT+AGG | - | tig0017060:51634-51653 | Msa1360420:CDS | 30.0% |
ATTTCCAACTTGAATCTCAA+AGG | + | tig0017060:51667-51686 | None:intergenic | 30.0% | |
GGTTGTAGAAATAGTCTAAA+CGG | + | tig0017060:50399-50418 | None:intergenic | 30.0% | |
!! | TTAGACTATTTCTACAACCA+AGG | - | tig0017060:50400-50419 | Msa1360420:CDS | 30.0% |
TGCTGATAATAATGATCAAG+CGG | - | tig0017060:50810-50829 | Msa1360420:CDS | 30.0% | |
TCCAAAAATGGTTCAGAAAT+GGG | - | tig0017060:50900-50919 | Msa1360420:CDS | 30.0% | |
ATAGAATCTTCCACAAACTT+CGG | + | tig0017060:50964-50983 | None:intergenic | 30.0% | |
! | ATAATTTTCGTCTCCCATTT+CGG | - | tig0017060:50989-51008 | Msa1360420:CDS | 30.0% |
! | TGATTTCTTTTATGCTTCCT+CGG | - | tig0017060:51041-51060 | Msa1360420:CDS | 30.0% |
CCTAATTTGATGAAATGGAT+CGG | - | tig0017060:51174-51193 | Msa1360420:CDS | 30.0% | |
CTAATTTGATGAAATGGATC+GGG | - | tig0017060:51175-51194 | Msa1360420:CDS | 30.0% | |
TTTGCTCTTCCAAATTGTAA+TGG | + | tig0017060:51351-51370 | None:intergenic | 30.0% | |
TACAATTTGGAAGAGCAAAA+AGG | - | tig0017060:51352-51371 | Msa1360420:CDS | 30.0% | |
ACAATTTGGAAGAGCAAAAA+GGG | - | tig0017060:51353-51372 | Msa1360420:CDS | 30.0% | |
! | AAGAAAGGTGAATTGTTGTT+AGG | - | tig0017060:51414-51433 | Msa1360420:CDS | 30.0% |
TTAGGATCTTTAGTAGCAAA+AGG | + | tig0017060:51447-51466 | None:intergenic | 30.0% | |
TCTGCTCTATCAAAAATCTT+AGG | + | tig0017060:51465-51484 | None:intergenic | 30.0% | |
! | TAAGATTTTTGATAGAGCAG+AGG | - | tig0017060:51464-51483 | Msa1360420:CDS | 30.0% |
TTTGTTGCAGATAGATTTGT+TGG | - | tig0017060:51489-51508 | Msa1360420:CDS | 30.0% | |
AATTGTTGAAACATGTGCTT+TGG | - | tig0017060:51526-51545 | Msa1360420:CDS | 30.0% | |
CAAAAGTCTTGAAATCAATG+TGG | + | tig0017060:51616-51635 | None:intergenic | 30.0% | |
!!! | CACATTGATTTCAAGACTTT+TGG | - | tig0017060:51614-51633 | Msa1360420:CDS | 30.0% |
!! | TGGTTGTTGAACTTTTTCTT+AGG | - | tig0017060:51634-51653 | Msa1360420:CDS | 30.0% |
ATTTCCAACTTGAATCTCAA+AGG | + | tig0017060:51667-51686 | None:intergenic | 30.0% | |
!!! | TTTTGGTGTTTGAGGAGATT+AGG | + | tig0017060:50199-50218 | None:intergenic | 35.0% |
! | TCTGAAACTGAGGATCTTAT+AGG | + | tig0017060:50271-50290 | None:intergenic | 35.0% |
TAGTCTAAACGGTCTTTGTA+GGG | + | tig0017060:50388-50407 | None:intergenic | 35.0% | |
ATAGTCTAAACGGTCTTTGT+AGG | + | tig0017060:50389-50408 | None:intergenic | 35.0% | |
! | AGATGGTTGACTGGTATTTT+TGG | + | tig0017060:50453-50472 | None:intergenic | 35.0% |
!!! | TTAGGGTTTTGAGCTATGAA+AGG | + | tig0017060:50499-50518 | None:intergenic | 35.0% |
! | TTCTTGAGCTGTTCATGTTT+TGG | + | tig0017060:50670-50689 | None:intergenic | 35.0% |
CTATAACATGACTGAAACTC+TGG | + | tig0017060:50736-50755 | None:intergenic | 35.0% | |
GTCCAAAAATGGTTCAGAAA+TGG | - | tig0017060:50899-50918 | Msa1360420:CDS | 35.0% | |
! | ACCCATTTCTGAACCATTTT+TGG | + | tig0017060:50904-50923 | None:intergenic | 35.0% |
CTTTCTTAATGAGCCGAAAT+GGG | + | tig0017060:51005-51024 | None:intergenic | 35.0% | |
TCTTTCTTAATGAGCCGAAA+TGG | + | tig0017060:51006-51025 | None:intergenic | 35.0% | |
! | GATTTCTTTTATGCTTCCTC+GGG | - | tig0017060:51042-51061 | Msa1360420:CDS | 35.0% |
TTTAGGTGTTTCAAAAGAGG+AGG | - | tig0017060:51089-51108 | Msa1360420:CDS | 35.0% | |
!!! | GCAACGTGTTTTAATTCGTT+TGG | - | tig0017060:51132-51151 | Msa1360420:CDS | 35.0% |
!!! | ACGTGTTTTAATTCGTTTGG+CGG | - | tig0017060:51135-51154 | Msa1360420:CDS | 35.0% |
CCGATCCATTTCATCAAATT+AGG | + | tig0017060:51177-51196 | None:intergenic | 35.0% | |
GTTGCATACAAAATTAGCGA+CGG | - | tig0017060:51212-51231 | Msa1360420:CDS | 35.0% | |
AAATTAGCGACGGAAATTAG+AGG | - | tig0017060:51222-51241 | Msa1360420:CDS | 35.0% | |
! | GAATATGCCGTTGATGAAAT+CGG | - | tig0017060:51290-51309 | Msa1360420:CDS | 35.0% |
!! | TATACCACCGATTTCATCAA+CGG | + | tig0017060:51300-51319 | None:intergenic | 35.0% |
! | CTTCCAAATTGTAATGGAAC+CGG | + | tig0017060:51345-51364 | None:intergenic | 35.0% |
!! | GATAGATTTGTTGGTGATGA+AGG | - | tig0017060:51498-51517 | Msa1360420:CDS | 35.0% |
AAACATGTGCTTTGGTCTAA+TGG | - | tig0017060:51534-51553 | Msa1360420:CDS | 35.0% | |
AATCTCAATCTCCAACTGTT+GGG | - | tig0017060:51562-51581 | Msa1360420:CDS | 35.0% | |
CATTGTTTATTCCCAACAGT+TGG | + | tig0017060:51576-51595 | None:intergenic | 35.0% | |
!! | GATTCCTTTGAGATTCAAGT+TGG | - | tig0017060:51660-51679 | Msa1360420:CDS | 35.0% |
! | CAAGTTGGAAATTCACCTTT+AGG | - | tig0017060:51675-51694 | Msa1360420:CDS | 35.0% |
!!! | TTTTGGTGTTTGAGGAGATT+AGG | + | tig0017060:50199-50218 | None:intergenic | 35.0% |
! | TCTGAAACTGAGGATCTTAT+AGG | + | tig0017060:50271-50290 | None:intergenic | 35.0% |
TAGTCTAAACGGTCTTTGTA+GGG | + | tig0017060:50388-50407 | None:intergenic | 35.0% | |
ATAGTCTAAACGGTCTTTGT+AGG | + | tig0017060:50389-50408 | None:intergenic | 35.0% | |
! | AGATGGTTGACTGGTATTTT+TGG | + | tig0017060:50453-50472 | None:intergenic | 35.0% |
!!! | TTAGGGTTTTGAGCTATGAA+AGG | + | tig0017060:50499-50518 | None:intergenic | 35.0% |
! | TTCTTGAGCTGTTCATGTTT+TGG | + | tig0017060:50670-50689 | None:intergenic | 35.0% |
CTATAACATGACTGAAACTC+TGG | + | tig0017060:50736-50755 | None:intergenic | 35.0% | |
GTCCAAAAATGGTTCAGAAA+TGG | - | tig0017060:50899-50918 | Msa1360420:CDS | 35.0% | |
! | ACCCATTTCTGAACCATTTT+TGG | + | tig0017060:50904-50923 | None:intergenic | 35.0% |
CTTTCTTAATGAGCCGAAAT+GGG | + | tig0017060:51005-51024 | None:intergenic | 35.0% | |
TCTTTCTTAATGAGCCGAAA+TGG | + | tig0017060:51006-51025 | None:intergenic | 35.0% | |
! | GATTTCTTTTATGCTTCCTC+GGG | - | tig0017060:51042-51061 | Msa1360420:CDS | 35.0% |
TTTAGGTGTTTCAAAAGAGG+AGG | - | tig0017060:51089-51108 | Msa1360420:CDS | 35.0% | |
!!! | GCAACGTGTTTTAATTCGTT+TGG | - | tig0017060:51132-51151 | Msa1360420:CDS | 35.0% |
!!! | ACGTGTTTTAATTCGTTTGG+CGG | - | tig0017060:51135-51154 | Msa1360420:CDS | 35.0% |
CCGATCCATTTCATCAAATT+AGG | + | tig0017060:51177-51196 | None:intergenic | 35.0% | |
GTTGCATACAAAATTAGCGA+CGG | - | tig0017060:51212-51231 | Msa1360420:CDS | 35.0% | |
AAATTAGCGACGGAAATTAG+AGG | - | tig0017060:51222-51241 | Msa1360420:CDS | 35.0% | |
! | GAATATGCCGTTGATGAAAT+CGG | - | tig0017060:51290-51309 | Msa1360420:CDS | 35.0% |
!! | TATACCACCGATTTCATCAA+CGG | + | tig0017060:51300-51319 | None:intergenic | 35.0% |
! | CTTCCAAATTGTAATGGAAC+CGG | + | tig0017060:51345-51364 | None:intergenic | 35.0% |
!! | GATAGATTTGTTGGTGATGA+AGG | - | tig0017060:51498-51517 | Msa1360420:CDS | 35.0% |
AAACATGTGCTTTGGTCTAA+TGG | - | tig0017060:51534-51553 | Msa1360420:CDS | 35.0% | |
AATCTCAATCTCCAACTGTT+GGG | - | tig0017060:51562-51581 | Msa1360420:CDS | 35.0% | |
CATTGTTTATTCCCAACAGT+TGG | + | tig0017060:51576-51595 | None:intergenic | 35.0% | |
!! | GATTCCTTTGAGATTCAAGT+TGG | - | tig0017060:51660-51679 | Msa1360420:CDS | 35.0% |
! | CAAGTTGGAAATTCACCTTT+AGG | - | tig0017060:51675-51694 | Msa1360420:CDS | 35.0% |
AGAAGGAGTTGAAAGAGTAG+AGG | + | tig0017060:50176-50195 | None:intergenic | 40.0% | |
TGTTTGAGGAGATTAGGAGA+AGG | + | tig0017060:50193-50212 | None:intergenic | 40.0% | |
!!! | AGGGTCTTTTTTGGTGTTTG+AGG | + | tig0017060:50207-50226 | None:intergenic | 40.0% |
TCTTATAGGTGGAAGAAAGG+TGG | + | tig0017060:50257-50276 | None:intergenic | 40.0% | |
GGATCTTATAGGTGGAAGAA+AGG | + | tig0017060:50260-50279 | None:intergenic | 40.0% | |
GAAACTGAGGATCTTATAGG+TGG | + | tig0017060:50268-50287 | None:intergenic | 40.0% | |
!!! | AGGTGGTTTTTCTGAAACTG+AGG | + | tig0017060:50281-50300 | None:intergenic | 40.0% |
! | CATAGTCACCAGGGATTTTA+CGG | + | tig0017060:50348-50367 | None:intergenic | 40.0% |
CTTTGTAGGGTTGGATGAAA+GGG | + | tig0017060:50375-50394 | None:intergenic | 40.0% | |
TCTTTGTAGGGTTGGATGAA+AGG | + | tig0017060:50376-50395 | None:intergenic | 40.0% | |
! | TGAAGTATTCATCACGACCT+TGG | + | tig0017060:50420-50439 | None:intergenic | 40.0% |
! | TTTTGAGCTATGAAAGGACC+AGG | + | tig0017060:50493-50512 | None:intergenic | 40.0% |
! | CAAGGAGTACAACTACGTTA+GGG | + | tig0017060:50516-50535 | None:intergenic | 40.0% |
! | TCAAGGAGTACAACTACGTT+AGG | + | tig0017060:50517-50536 | None:intergenic | 40.0% |
AACGTAGTTGTACTCCTTGA+TGG | - | tig0017060:50517-50536 | Msa1360420:CDS | 40.0% | |
GATAAAACCGATGTCTTCAC+AGG | - | tig0017060:50577-50596 | Msa1360420:CDS | 40.0% | |
GTATGTACCTGTGAAGACAT+CGG | + | tig0017060:50587-50606 | None:intergenic | 40.0% | |
!!! | TGTTCATGTTTTGGTTCGGA+GGG | + | tig0017060:50661-50680 | None:intergenic | 40.0% |
!!! | GAGCTGTTCATGTTTTGGTT+CGG | + | tig0017060:50665-50684 | None:intergenic | 40.0% |
CATGACGACTACGTGATTTA+AGG | + | tig0017060:50708-50727 | None:intergenic | 40.0% | |
!! | GAGAGTCAACTTGCTGAAAA+TGG | - | tig0017060:50775-50794 | Msa1360420:CDS | 40.0% |
! | TTCTTGAACCGTGCTTTGTT+CGG | - | tig0017060:50841-50860 | Msa1360420:CDS | 40.0% |
! | TTAGGTCCAGTACTGAAACT+GGG | - | tig0017060:50934-50953 | Msa1360420:CDS | 40.0% |
AATCTTCCACAAACTTCGGT+AGG | + | tig0017060:50960-50979 | None:intergenic | 40.0% | |
GCGTTTAGGTGTTTCAAAAG+AGG | - | tig0017060:51086-51105 | Msa1360420:CDS | 40.0% | |
!!! | CGTGTTTTAATTCGTTTGGC+GGG | - | tig0017060:51136-51155 | Msa1360420:CDS | 40.0% |
!! | AGCTTTTCGTATTGATCCAC+CGG | - | tig0017060:51323-51342 | Msa1360420:CDS | 40.0% |
ACAGTTGGAGATTGAGATTC+TGG | + | tig0017060:51561-51580 | None:intergenic | 40.0% | |
GAATCTCAATCTCCAACTGT+TGG | - | tig0017060:51561-51580 | Msa1360420:CDS | 40.0% | |
GTTGGGAATAAACAATGTGC+TGG | - | tig0017060:51579-51598 | Msa1360420:CDS | 40.0% | |
TGATCTCTTTAGTGAGGTGA+GGG | + | tig0017060:51712-51731 | None:intergenic | 40.0% | |
TTGATCTCTTTAGTGAGGTG+AGG | + | tig0017060:51713-51732 | None:intergenic | 40.0% | |
GAAGCTTGATCTCTTTAGTG+AGG | + | tig0017060:51718-51737 | None:intergenic | 40.0% | |
AGAAGGAGTTGAAAGAGTAG+AGG | + | tig0017060:50176-50195 | None:intergenic | 40.0% | |
TGTTTGAGGAGATTAGGAGA+AGG | + | tig0017060:50193-50212 | None:intergenic | 40.0% | |
!!! | AGGGTCTTTTTTGGTGTTTG+AGG | + | tig0017060:50207-50226 | None:intergenic | 40.0% |
TCTTATAGGTGGAAGAAAGG+TGG | + | tig0017060:50257-50276 | None:intergenic | 40.0% | |
GGATCTTATAGGTGGAAGAA+AGG | + | tig0017060:50260-50279 | None:intergenic | 40.0% | |
GAAACTGAGGATCTTATAGG+TGG | + | tig0017060:50268-50287 | None:intergenic | 40.0% | |
!!! | AGGTGGTTTTTCTGAAACTG+AGG | + | tig0017060:50281-50300 | None:intergenic | 40.0% |
! | CATAGTCACCAGGGATTTTA+CGG | + | tig0017060:50348-50367 | None:intergenic | 40.0% |
CTTTGTAGGGTTGGATGAAA+GGG | + | tig0017060:50375-50394 | None:intergenic | 40.0% | |
TCTTTGTAGGGTTGGATGAA+AGG | + | tig0017060:50376-50395 | None:intergenic | 40.0% | |
! | TGAAGTATTCATCACGACCT+TGG | + | tig0017060:50420-50439 | None:intergenic | 40.0% |
! | TTTTGAGCTATGAAAGGACC+AGG | + | tig0017060:50493-50512 | None:intergenic | 40.0% |
! | CAAGGAGTACAACTACGTTA+GGG | + | tig0017060:50516-50535 | None:intergenic | 40.0% |
! | TCAAGGAGTACAACTACGTT+AGG | + | tig0017060:50517-50536 | None:intergenic | 40.0% |
AACGTAGTTGTACTCCTTGA+TGG | - | tig0017060:50517-50536 | Msa1360420:CDS | 40.0% | |
GATAAAACCGATGTCTTCAC+AGG | - | tig0017060:50577-50596 | Msa1360420:CDS | 40.0% | |
GTATGTACCTGTGAAGACAT+CGG | + | tig0017060:50587-50606 | None:intergenic | 40.0% | |
!!! | TGTTCATGTTTTGGTTCGGA+GGG | + | tig0017060:50661-50680 | None:intergenic | 40.0% |
!!! | GAGCTGTTCATGTTTTGGTT+CGG | + | tig0017060:50665-50684 | None:intergenic | 40.0% |
CATGACGACTACGTGATTTA+AGG | + | tig0017060:50708-50727 | None:intergenic | 40.0% | |
!! | GAGAGTCAACTTGCTGAAAA+TGG | - | tig0017060:50775-50794 | Msa1360420:CDS | 40.0% |
! | TTCTTGAACCGTGCTTTGTT+CGG | - | tig0017060:50841-50860 | Msa1360420:CDS | 40.0% |
! | TTAGGTCCAGTACTGAAACT+GGG | - | tig0017060:50934-50953 | Msa1360420:CDS | 40.0% |
AATCTTCCACAAACTTCGGT+AGG | + | tig0017060:50960-50979 | None:intergenic | 40.0% | |
GCGTTTAGGTGTTTCAAAAG+AGG | - | tig0017060:51086-51105 | Msa1360420:CDS | 40.0% | |
!!! | CGTGTTTTAATTCGTTTGGC+GGG | - | tig0017060:51136-51155 | Msa1360420:CDS | 40.0% |
!! | AGCTTTTCGTATTGATCCAC+CGG | - | tig0017060:51323-51342 | Msa1360420:CDS | 40.0% |
ACAGTTGGAGATTGAGATTC+TGG | + | tig0017060:51561-51580 | None:intergenic | 40.0% | |
GAATCTCAATCTCCAACTGT+TGG | - | tig0017060:51561-51580 | Msa1360420:CDS | 40.0% | |
GTTGGGAATAAACAATGTGC+TGG | - | tig0017060:51579-51598 | Msa1360420:CDS | 40.0% | |
TGATCTCTTTAGTGAGGTGA+GGG | + | tig0017060:51712-51731 | None:intergenic | 40.0% | |
TTGATCTCTTTAGTGAGGTG+AGG | + | tig0017060:51713-51732 | None:intergenic | 40.0% | |
GAAGCTTGATCTCTTTAGTG+AGG | + | tig0017060:51718-51737 | None:intergenic | 40.0% | |
!!! | TGGTGGAAGAGGGTCTTTTT+TGG | + | tig0017060:50216-50235 | None:intergenic | 45.0% |
TATAGGTGGAAGAAAGGTGG+AGG | + | tig0017060:50254-50273 | None:intergenic | 45.0% | |
TGAGAGATGGAGACTTGGAA+AGG | + | tig0017060:50301-50320 | None:intergenic | 45.0% | |
GGTTGTTTGTGGTTGAGAGA+TGG | + | tig0017060:50314-50333 | None:intergenic | 45.0% | |
ATCGGAAGCTTGGTTGTTTG+TGG | + | tig0017060:50325-50344 | None:intergenic | 45.0% | |
! | GATTTTACGGATCGGAAGCT+TGG | + | tig0017060:50335-50354 | None:intergenic | 45.0% |
! | TCACCAGGGATTTTACGGAT+CGG | + | tig0017060:50343-50362 | None:intergenic | 45.0% |
CGTAAAATCCCTGGTGACTA+TGG | - | tig0017060:50346-50365 | Msa1360420:CDS | 45.0% | |
CTAAACGGTCTTTGTAGGGT+TGG | + | tig0017060:50384-50403 | None:intergenic | 45.0% | |
ACACCTTCTACAGAACTCAC+TGG | - | tig0017060:50607-50626 | Msa1360420:CDS | 45.0% | |
!!! | CTGTTCATGTTTTGGTTCGG+AGG | + | tig0017060:50662-50681 | None:intergenic | 45.0% |
GGTTAACACCGAACAAAGCA+CGG | + | tig0017060:50852-50871 | None:intergenic | 45.0% | |
TGGACTTGACGGTCCAAAAA+TGG | - | tig0017060:50888-50907 | Msa1360420:CDS | 45.0% | |
! | GTTAGGTCCAGTACTGAAAC+TGG | - | tig0017060:50933-50952 | Msa1360420:CDS | 45.0% |
AGAGGAGCAATTAGATCTGC+TGG | - | tig0017060:51240-51259 | Msa1360420:CDS | 45.0% | |
CATCAACGGCATATTCTCCA+TGG | + | tig0017060:51286-51305 | None:intergenic | 45.0% | |
! | TATGCCGTTGATGAAATCGG+TGG | - | tig0017060:51293-51312 | Msa1360420:CDS | 45.0% |
! | CCAAATTGTAATGGAACCGG+TGG | + | tig0017060:51342-51361 | None:intergenic | 45.0% |
!! | CCACCGGTTCCATTACAATT+TGG | - | tig0017060:51339-51358 | Msa1360420:CDS | 45.0% |
TGGAAGAGCAAAAAGGGACA+TGG | - | tig0017060:51359-51378 | Msa1360420:CDS | 45.0% | |
AGGGTAATAGCAGGACCTAA+AGG | + | tig0017060:51693-51712 | None:intergenic | 45.0% | |
!!! | TGGTGGAAGAGGGTCTTTTT+TGG | + | tig0017060:50216-50235 | None:intergenic | 45.0% |
TATAGGTGGAAGAAAGGTGG+AGG | + | tig0017060:50254-50273 | None:intergenic | 45.0% | |
TGAGAGATGGAGACTTGGAA+AGG | + | tig0017060:50301-50320 | None:intergenic | 45.0% | |
GGTTGTTTGTGGTTGAGAGA+TGG | + | tig0017060:50314-50333 | None:intergenic | 45.0% | |
ATCGGAAGCTTGGTTGTTTG+TGG | + | tig0017060:50325-50344 | None:intergenic | 45.0% | |
! | GATTTTACGGATCGGAAGCT+TGG | + | tig0017060:50335-50354 | None:intergenic | 45.0% |
! | TCACCAGGGATTTTACGGAT+CGG | + | tig0017060:50343-50362 | None:intergenic | 45.0% |
CGTAAAATCCCTGGTGACTA+TGG | - | tig0017060:50346-50365 | Msa1360420:CDS | 45.0% | |
CTAAACGGTCTTTGTAGGGT+TGG | + | tig0017060:50384-50403 | None:intergenic | 45.0% | |
ACACCTTCTACAGAACTCAC+TGG | - | tig0017060:50607-50626 | Msa1360420:CDS | 45.0% | |
!!! | CTGTTCATGTTTTGGTTCGG+AGG | + | tig0017060:50662-50681 | None:intergenic | 45.0% |
GGTTAACACCGAACAAAGCA+CGG | + | tig0017060:50852-50871 | None:intergenic | 45.0% | |
TGGACTTGACGGTCCAAAAA+TGG | - | tig0017060:50888-50907 | Msa1360420:CDS | 45.0% | |
! | GTTAGGTCCAGTACTGAAAC+TGG | - | tig0017060:50933-50952 | Msa1360420:CDS | 45.0% |
AGAGGAGCAATTAGATCTGC+TGG | - | tig0017060:51240-51259 | Msa1360420:CDS | 45.0% | |
CATCAACGGCATATTCTCCA+TGG | + | tig0017060:51286-51305 | None:intergenic | 45.0% | |
! | TATGCCGTTGATGAAATCGG+TGG | - | tig0017060:51293-51312 | Msa1360420:CDS | 45.0% |
! | CCAAATTGTAATGGAACCGG+TGG | + | tig0017060:51342-51361 | None:intergenic | 45.0% |
!! | CCACCGGTTCCATTACAATT+TGG | - | tig0017060:51339-51358 | Msa1360420:CDS | 45.0% |
TGGAAGAGCAAAAAGGGACA+TGG | - | tig0017060:51359-51378 | Msa1360420:CDS | 45.0% | |
AGGGTAATAGCAGGACCTAA+AGG | + | tig0017060:51693-51712 | None:intergenic | 45.0% | |
!! | CGTGATAAGGTGGTGGAAGA+GGG | + | tig0017060:50226-50245 | None:intergenic | 50.0% |
!! | TCGTGATAAGGTGGTGGAAG+AGG | + | tig0017060:50227-50246 | None:intergenic | 50.0% |
GAGATGGAGACTTGGAAAGG+TGG | + | tig0017060:50298-50317 | None:intergenic | 50.0% | |
GTGGTTGAGAGATGGAGACT+TGG | + | tig0017060:50306-50325 | None:intergenic | 50.0% | |
CTTCCGATCCGTAAAATCCC+TGG | - | tig0017060:50337-50356 | Msa1360420:CDS | 50.0% | |
AAGGGATGCCATAGTCACCA+GGG | + | tig0017060:50357-50376 | None:intergenic | 50.0% | |
AAAGGGATGCCATAGTCACC+AGG | + | tig0017060:50358-50377 | None:intergenic | 50.0% | |
TAGTGCGGAAGATGGTTGAC+TGG | + | tig0017060:50462-50481 | None:intergenic | 50.0% | |
AGGAACGTTAGTGCGGAAGA+TGG | + | tig0017060:50470-50489 | None:intergenic | 50.0% | |
TGAGCTATGAAAGGACCAGG+AGG | + | tig0017060:50490-50509 | None:intergenic | 50.0% | |
! | CGGGGAAGCTTTTACCATCA+AGG | + | tig0017060:50534-50553 | None:intergenic | 50.0% |
CCACCAGTGAGTTCTGTAGA+AGG | + | tig0017060:50613-50632 | None:intergenic | 50.0% | |
CCTTCTACAGAACTCACTGG+TGG | - | tig0017060:50610-50629 | Msa1360420:CDS | 50.0% | |
!!! | GTTTTGGTTCGGAGGGATCA+AGG | + | tig0017060:50654-50673 | None:intergenic | 50.0% |
AACCCTGTTGACACCGAACT+TGG | - | tig0017060:50868-50887 | Msa1360420:CDS | 50.0% | |
!! | GTCCAAGTTCGGTGTCAACA+GGG | + | tig0017060:50873-50892 | None:intergenic | 50.0% |
!! | AGTCCAAGTTCGGTGTCAAC+AGG | + | tig0017060:50874-50893 | None:intergenic | 50.0% |
GACACCGAACTTGGACTTGA+CGG | - | tig0017060:50877-50896 | Msa1360420:CDS | 50.0% | |
TGGACCGTCAAGTCCAAGTT+CGG | + | tig0017060:50884-50903 | None:intergenic | 50.0% | |
TTGATGAAATGGATCGGGCG+CGG | - | tig0017060:51180-51199 | Msa1360420:CDS | 50.0% | |
GGAGCAATTAGATCTGCTGG+CGG | - | tig0017060:51243-51262 | Msa1360420:CDS | 50.0% | |
GAGCAATTAGATCTGCTGGC+GGG | - | tig0017060:51244-51263 | Msa1360420:CDS | 50.0% | |
AGCAATTAGATCTGCTGGCG+GGG | - | tig0017060:51245-51264 | Msa1360420:CDS | 50.0% | |
AGTGAGGTGAGGGTAATAGC+AGG | + | tig0017060:51702-51721 | None:intergenic | 50.0% | |
!! | CGTGATAAGGTGGTGGAAGA+GGG | + | tig0017060:50226-50245 | None:intergenic | 50.0% |
!! | TCGTGATAAGGTGGTGGAAG+AGG | + | tig0017060:50227-50246 | None:intergenic | 50.0% |
GAGATGGAGACTTGGAAAGG+TGG | + | tig0017060:50298-50317 | None:intergenic | 50.0% | |
GTGGTTGAGAGATGGAGACT+TGG | + | tig0017060:50306-50325 | None:intergenic | 50.0% | |
CTTCCGATCCGTAAAATCCC+TGG | - | tig0017060:50337-50356 | Msa1360420:CDS | 50.0% | |
AAGGGATGCCATAGTCACCA+GGG | + | tig0017060:50357-50376 | None:intergenic | 50.0% | |
AAAGGGATGCCATAGTCACC+AGG | + | tig0017060:50358-50377 | None:intergenic | 50.0% | |
TAGTGCGGAAGATGGTTGAC+TGG | + | tig0017060:50462-50481 | None:intergenic | 50.0% | |
AGGAACGTTAGTGCGGAAGA+TGG | + | tig0017060:50470-50489 | None:intergenic | 50.0% | |
TGAGCTATGAAAGGACCAGG+AGG | + | tig0017060:50490-50509 | None:intergenic | 50.0% | |
! | CGGGGAAGCTTTTACCATCA+AGG | + | tig0017060:50534-50553 | None:intergenic | 50.0% |
CCACCAGTGAGTTCTGTAGA+AGG | + | tig0017060:50613-50632 | None:intergenic | 50.0% | |
CCTTCTACAGAACTCACTGG+TGG | - | tig0017060:50610-50629 | Msa1360420:CDS | 50.0% | |
!!! | GTTTTGGTTCGGAGGGATCA+AGG | + | tig0017060:50654-50673 | None:intergenic | 50.0% |
AACCCTGTTGACACCGAACT+TGG | - | tig0017060:50868-50887 | Msa1360420:CDS | 50.0% | |
!! | GTCCAAGTTCGGTGTCAACA+GGG | + | tig0017060:50873-50892 | None:intergenic | 50.0% |
!! | AGTCCAAGTTCGGTGTCAAC+AGG | + | tig0017060:50874-50893 | None:intergenic | 50.0% |
GACACCGAACTTGGACTTGA+CGG | - | tig0017060:50877-50896 | Msa1360420:CDS | 50.0% | |
TGGACCGTCAAGTCCAAGTT+CGG | + | tig0017060:50884-50903 | None:intergenic | 50.0% | |
TTGATGAAATGGATCGGGCG+CGG | - | tig0017060:51180-51199 | Msa1360420:CDS | 50.0% | |
GGAGCAATTAGATCTGCTGG+CGG | - | tig0017060:51243-51262 | Msa1360420:CDS | 50.0% | |
GAGCAATTAGATCTGCTGGC+GGG | - | tig0017060:51244-51263 | Msa1360420:CDS | 50.0% | |
AGCAATTAGATCTGCTGGCG+GGG | - | tig0017060:51245-51264 | Msa1360420:CDS | 50.0% | |
AGTGAGGTGAGGGTAATAGC+AGG | + | tig0017060:51702-51721 | None:intergenic | 50.0% | |
GGAACGTCGTGATAAGGTGG+TGG | + | tig0017060:50233-50252 | None:intergenic | 55.0% | |
GGAGGAACGTCGTGATAAGG+TGG | + | tig0017060:50236-50255 | None:intergenic | 55.0% | |
GGTGGAGGAACGTCGTGATA+AGG | + | tig0017060:50239-50258 | None:intergenic | 55.0% | |
TTCCGCACTAACGTTCCTCC+TGG | - | tig0017060:50472-50491 | Msa1360420:CDS | 55.0% | |
GACCAGGAGGAACGTTAGTG+CGG | + | tig0017060:50477-50496 | None:intergenic | 55.0% | |
TTCGATGCGTCGAAGAGGAC+GGG | + | tig0017060:50553-50572 | None:intergenic | 55.0% | |
CTTCGATGCGTCGAAGAGGA+CGG | + | tig0017060:50554-50573 | None:intergenic | 55.0% | |
CGATCTTCGATGCGTCGAAG+AGG | + | tig0017060:50558-50577 | None:intergenic | 55.0% | |
GGTAGGCCCAGTTTCAGTAC+TGG | + | tig0017060:50943-50962 | None:intergenic | 55.0% | |
ACTGGGCCTACCGAAGTTTG+TGG | - | tig0017060:50951-50970 | Msa1360420:CDS | 55.0% | |
! | TTCCTCGGGATTTGCTCTCG+AGG | - | tig0017060:51056-51075 | Msa1360420:CDS | 55.0% |
TTCCTCGAGAGCAAATCCCG+AGG | + | tig0017060:51061-51080 | None:intergenic | 55.0% | |
! | CTCGAGGAAGCAGAGCGTTT+AGG | - | tig0017060:51072-51091 | Msa1360420:CDS | 55.0% |
TGCTGGCGGGGAGATTACTA+TGG | - | tig0017060:51257-51276 | Msa1360420:CDS | 55.0% | |
TGGCGGGGAGATTACTATGG+CGG | - | tig0017060:51260-51279 | Msa1360420:CDS | 55.0% | |
GGAGATTACTATGGCGGCCA+TGG | - | tig0017060:51266-51285 | Msa1360420:CDS | 55.0% | |
GGAACGTCGTGATAAGGTGG+TGG | + | tig0017060:50233-50252 | None:intergenic | 55.0% | |
GGAGGAACGTCGTGATAAGG+TGG | + | tig0017060:50236-50255 | None:intergenic | 55.0% | |
GGTGGAGGAACGTCGTGATA+AGG | + | tig0017060:50239-50258 | None:intergenic | 55.0% | |
TTCCGCACTAACGTTCCTCC+TGG | - | tig0017060:50472-50491 | Msa1360420:CDS | 55.0% | |
GACCAGGAGGAACGTTAGTG+CGG | + | tig0017060:50477-50496 | None:intergenic | 55.0% | |
TTCGATGCGTCGAAGAGGAC+GGG | + | tig0017060:50553-50572 | None:intergenic | 55.0% | |
CTTCGATGCGTCGAAGAGGA+CGG | + | tig0017060:50554-50573 | None:intergenic | 55.0% | |
CGATCTTCGATGCGTCGAAG+AGG | + | tig0017060:50558-50577 | None:intergenic | 55.0% | |
GGTAGGCCCAGTTTCAGTAC+TGG | + | tig0017060:50943-50962 | None:intergenic | 55.0% | |
ACTGGGCCTACCGAAGTTTG+TGG | - | tig0017060:50951-50970 | Msa1360420:CDS | 55.0% | |
! | TTCCTCGGGATTTGCTCTCG+AGG | - | tig0017060:51056-51075 | Msa1360420:CDS | 55.0% |
TTCCTCGAGAGCAAATCCCG+AGG | + | tig0017060:51061-51080 | None:intergenic | 55.0% | |
! | CTCGAGGAAGCAGAGCGTTT+AGG | - | tig0017060:51072-51091 | Msa1360420:CDS | 55.0% |
TGCTGGCGGGGAGATTACTA+TGG | - | tig0017060:51257-51276 | Msa1360420:CDS | 55.0% | |
TGGCGGGGAGATTACTATGG+CGG | - | tig0017060:51260-51279 | Msa1360420:CDS | 55.0% | |
GGAGATTACTATGGCGGCCA+TGG | - | tig0017060:51266-51285 | Msa1360420:CDS | 55.0% | |
TCGATGCGTCGAAGAGGACG+GGG | + | tig0017060:50552-50571 | None:intergenic | 60.0% | |
ATGAAATGGATCGGGCGCGG+TGG | - | tig0017060:51183-51202 | Msa1360420:CDS | 60.0% | |
TCGATGCGTCGAAGAGGACG+GGG | + | tig0017060:50552-50571 | None:intergenic | 60.0% | |
ATGAAATGGATCGGGCGCGG+TGG | - | tig0017060:51183-51202 | Msa1360420:CDS | 60.0% | |
GGATCGGGCGCGGTGGAGTG+AGG | - | tig0017060:51190-51209 | Msa1360420:CDS | 75.0% | |
GGATCGGGCGCGGTGGAGTG+AGG | - | tig0017060:51190-51209 | Msa1360420:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0017060 | gene | 50166 | 51740 | 50166 | ID=Msa1360420;Name=Msa1360420 |
tig0017060 | mRNA | 50166 | 51740 | 50166 | ID=Msa1360420-mRNA-1;Parent=Msa1360420;Name=Msa1360420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|524 |
tig0017060 | exon | 50166 | 51740 | 50166 | ID=Msa1360420-mRNA-1:exon:11886;Parent=Msa1360420-mRNA-1 |
tig0017060 | CDS | 50166 | 51740 | 50166 | ID=Msa1360420-mRNA-1:cds;Parent=Msa1360420-mRNA-1 |
Gene Sequence |
Protein sequence |