AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1360420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360420 MtrunA17_Chr1g0154381 98.092 524 10 0 1 524 1 524 0.0 1058
Msa1360420 MtrunA17_Chr3g0141271 71.915 470 130 2 57 524 90 559 0.0 707
Msa1360420 MtrunA17_Chr4g0034141 48.125 480 243 4 48 523 2 479 1.79e-167 483
Msa1360420 MtrunA17_Chr1g0162571 50.418 478 229 6 52 523 8 483 8.00e-167 481
Msa1360420 MtrunA17_Chr2g0322321 39.787 470 269 5 56 522 21 479 1.89e-120 362
Msa1360420 MtrunA17_Chr1g0162591 48.750 240 121 2 283 522 4 241 2.71e-82 256
Msa1360420 MtrunA17_Chr1g0162581 45.418 251 131 4 40 285 2 251 3.50e-68 219
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1360420 AT5G42650.1 60.077 521 204 3 4 524 2 518 0.0 649
Msa1360420 AT4G15440.1 40.489 368 215 4 137 501 4 370 3.20e-93 289

Find 118 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGATTTCAAGACTTT+TGG 0.223131 tig0017060:-50270 Msa1360420:CDS
CATGACGACTACGTGATTTA+AGG 0.223634 tig0017060:+51179 None:intergenic
TTCTTGAGCTGTTCATGTTT+TGG 0.234640 tig0017060:+51217 None:intergenic
CCGATCCATTTCATCAAATT+AGG 0.234831 tig0017060:+50710 None:intergenic
CCACCGGTTCCATTACAATT+TGG 0.257621 tig0017060:-50545 Msa1360420:CDS
TACAATTTGGAAGAGCAAAA+AGG 0.266309 tig0017060:-50532 Msa1360420:CDS
CGTAAAATCCCTGGTGACTA+TGG 0.271642 tig0017060:-51538 Msa1360420:CDS
TCTGAAACTGAGGATCTTAT+AGG 0.272458 tig0017060:+51616 None:intergenic
ACAGTTGGAGATTGAGATTC+TGG 0.272740 tig0017060:+50326 None:intergenic
GTGATTGAAAATCATGAAAA+TGG 0.293983 tig0017060:-50503 Msa1360420:CDS
GAGAGTCAACTTGCTGAAAA+TGG 0.300576 tig0017060:-51109 Msa1360420:CDS
AAACATGTGCTTTGGTCTAA+TGG 0.336037 tig0017060:-50350 Msa1360420:CDS
CAAGTTGGAAATTCACCTTT+AGG 0.336124 tig0017060:-50209 Msa1360420:CDS
AAGAAAGGTGAATTGTTGTT+AGG 0.339578 tig0017060:-50470 Msa1360420:CDS
AAAAGAAATCATAAAGTCTT+TGG 0.340810 tig0017060:+50855 None:intergenic
ATAGTCTAAACGGTCTTTGT+AGG 0.357496 tig0017060:+51498 None:intergenic
GTTAGGTCCAGTACTGAAAC+TGG 0.365669 tig0017060:-50951 Msa1360420:CDS
AGTCCAAGTTCGGTGTCAAC+AGG 0.376332 tig0017060:+51013 None:intergenic
TCTTTCTTAATGAGCCGAAA+TGG 0.384153 tig0017060:+50881 None:intergenic
AACGTAGTTGTACTCCTTGA+TGG 0.385691 tig0017060:-51367 Msa1360420:CDS
TTTGCTCTTCCAAATTGTAA+TGG 0.388470 tig0017060:+50536 None:intergenic
TCAAGGAGTACAACTACGTT+AGG 0.399517 tig0017060:+51370 None:intergenic
TTCTTGAACCGTGCTTTGTT+CGG 0.407853 tig0017060:-51043 Msa1360420:CDS
CTATAACATGACTGAAACTC+TGG 0.418932 tig0017060:+51151 None:intergenic
AACCCTGTTGACACCGAACT+TGG 0.419339 tig0017060:-51016 Msa1360420:CDS
CTCGAGGAAGCAGAGCGTTT+AGG 0.429148 tig0017060:-50812 Msa1360420:CDS
TTAGGATCTTTAGTAGCAAA+AGG 0.430684 tig0017060:+50440 None:intergenic
AATTGTTGAAACATGTGCTT+TGG 0.436664 tig0017060:-50358 Msa1360420:CDS
TTCGATGCGTCGAAGAGGAC+GGG 0.442058 tig0017060:+51334 None:intergenic
CTAATTTGATGAAATGGATC+GGG 0.442169 tig0017060:-50709 Msa1360420:CDS
CTTTCTTAATGAGCCGAAAT+GGG 0.448393 tig0017060:+50882 None:intergenic
GATAGATTTGTTGGTGATGA+AGG 0.449657 tig0017060:-50386 Msa1360420:CDS
ATCGGAAGCTTGGTTGTTTG+TGG 0.457864 tig0017060:+51562 None:intergenic
TGGACCGTCAAGTCCAAGTT+CGG 0.457945 tig0017060:+51003 None:intergenic
TTTGTTGCAGATAGATTTGT+TGG 0.462474 tig0017060:-50395 Msa1360420:CDS
GGTTGTAGAAATAGTCTAAA+CGG 0.463350 tig0017060:+51488 None:intergenic
TGCTGGCGGGGAGATTACTA+TGG 0.465831 tig0017060:-50627 Msa1360420:CDS
AAATTAGCGACGGAAATTAG+AGG 0.465886 tig0017060:-50662 Msa1360420:CDS
GGAGATTACTATGGCGGCCA+TGG 0.473614 tig0017060:-50618 Msa1360420:CDS
GACACCGAACTTGGACTTGA+CGG 0.474937 tig0017060:-51007 Msa1360420:CDS
CTTCCAAATTGTAATGGAAC+CGG 0.475194 tig0017060:+50542 None:intergenic
GCGTTTAGGTGTTTCAAAAG+AGG 0.480545 tig0017060:-50798 Msa1360420:CDS
CCACCAGTGAGTTCTGTAGA+AGG 0.484397 tig0017060:+51274 None:intergenic
TCTTTGTAGGGTTGGATGAA+AGG 0.484515 tig0017060:+51511 None:intergenic
GATTCCTTTGAGATTCAAGT+TGG 0.484812 tig0017060:-50224 Msa1360420:CDS
TCGTGATAAGGTGGTGGAAG+AGG 0.486006 tig0017060:+51660 None:intergenic
CTAAACGGTCTTTGTAGGGT+TGG 0.489158 tig0017060:+51503 None:intergenic
GGTGGAGGAACGTCGTGATA+AGG 0.495151 tig0017060:+51648 None:intergenic
GAATCTCAATCTCCAACTGT+TGG 0.495729 tig0017060:-50323 Msa1360420:CDS
CTTTGTAGGGTTGGATGAAA+GGG 0.497717 tig0017060:+51512 None:intergenic
CCTAATTTGATGAAATGGAT+CGG 0.498399 tig0017060:-50710 Msa1360420:CDS
AATCTCAATCTCCAACTGTT+GGG 0.502505 tig0017060:-50322 Msa1360420:CDS
AGAGGAGCAATTAGATCTGC+TGG 0.504448 tig0017060:-50644 Msa1360420:CDS
TTCCGCACTAACGTTCCTCC+TGG 0.506823 tig0017060:-51412 Msa1360420:CDS
GGTAGGCCCAGTTTCAGTAC+TGG 0.509236 tig0017060:+50944 None:intergenic
GGTTGTTTGTGGTTGAGAGA+TGG 0.510021 tig0017060:+51573 None:intergenic
CATTGTTTATTCCCAACAGT+TGG 0.511671 tig0017060:+50311 None:intergenic
TTAGACTATTTCTACAACCA+AGG 0.515498 tig0017060:-51484 Msa1360420:CDS
GAATATGCCGTTGATGAAAT+CGG 0.515909 tig0017060:-50594 Msa1360420:CDS
ACTGGGCCTACCGAAGTTTG+TGG 0.518134 tig0017060:-50933 Msa1360420:CDS
TAGTCTAAACGGTCTTTGTA+GGG 0.523147 tig0017060:+51499 None:intergenic
GGATCTTATAGGTGGAAGAA+AGG 0.524920 tig0017060:+51627 None:intergenic
GAGCAATTAGATCTGCTGGC+GGG 0.527113 tig0017060:-50640 Msa1360420:CDS
TGAAGTATTCATCACGACCT+TGG 0.527248 tig0017060:+51467 None:intergenic
GAGATGGAGACTTGGAAAGG+TGG 0.530805 tig0017060:+51589 None:intergenic
GATAAAACCGATGTCTTCAC+AGG 0.538925 tig0017060:-51307 Msa1360420:CDS
AGCAATTAGATCTGCTGGCG+GGG 0.539011 tig0017060:-50639 Msa1360420:CDS
CAAGGAGTACAACTACGTTA+GGG 0.540708 tig0017060:+51371 None:intergenic
AAAGGGATGCCATAGTCACC+AGG 0.542937 tig0017060:+51529 None:intergenic
GTGGTTGAGAGATGGAGACT+TGG 0.545394 tig0017060:+51581 None:intergenic
ATTTCCAACTTGAATCTCAA+AGG 0.547715 tig0017060:+50220 None:intergenic
CGTGATAAGGTGGTGGAAGA+GGG 0.548060 tig0017060:+51661 None:intergenic
TGCTGATAATAATGATCAAG+CGG 0.549573 tig0017060:-51074 Msa1360420:CDS
CTTCCGATCCGTAAAATCCC+TGG 0.555994 tig0017060:-51547 Msa1360420:CDS
TGTTTGAGGAGATTAGGAGA+AGG 0.557408 tig0017060:+51694 None:intergenic
CTTCGATGCGTCGAAGAGGA+CGG 0.557973 tig0017060:+51333 None:intergenic
TGATCTCTTTAGTGAGGTGA+GGG 0.559767 tig0017060:+50175 None:intergenic
TCTTATAGGTGGAAGAAAGG+TGG 0.561423 tig0017060:+51630 None:intergenic
AGGGTAATAGCAGGACCTAA+AGG 0.563300 tig0017060:+50194 None:intergenic
TTGATCTCTTTAGTGAGGTG+AGG 0.564316 tig0017060:+50174 None:intergenic
AGAAGGAGTTGAAAGAGTAG+AGG 0.564504 tig0017060:+51711 None:intergenic
CATCAACGGCATATTCTCCA+TGG 0.564805 tig0017060:+50601 None:intergenic
TAGTGCGGAAGATGGTTGAC+TGG 0.567027 tig0017060:+51425 None:intergenic
CGATCTTCGATGCGTCGAAG+AGG 0.569780 tig0017060:+51329 None:intergenic
AGGAACGTTAGTGCGGAAGA+TGG 0.576272 tig0017060:+51417 None:intergenic
TTTAGGTGTTTCAAAAGAGG+AGG 0.581669 tig0017060:-50795 Msa1360420:CDS
GGATCGGGCGCGGTGGAGTG+AGG 0.582337 tig0017060:-50694 Msa1360420:CDS
ATAGAATCTTCCACAAACTT+CGG 0.583947 tig0017060:+50923 None:intergenic
TCGATGCGTCGAAGAGGACG+GGG 0.588579 tig0017060:+51335 None:intergenic
TATACCACCGATTTCATCAA+CGG 0.592868 tig0017060:+50587 None:intergenic
CCAAATTGTAATGGAACCGG+TGG 0.594525 tig0017060:+50545 None:intergenic
GTTGGGAATAAACAATGTGC+TGG 0.598250 tig0017060:-50305 Msa1360420:CDS
GGAACGTCGTGATAAGGTGG+TGG 0.600776 tig0017060:+51654 None:intergenic
TATAGGTGGAAGAAAGGTGG+AGG 0.604481 tig0017060:+51633 None:intergenic
TTCCTCGGGATTTGCTCTCG+AGG 0.607265 tig0017060:-50828 Msa1360420:CDS
AGTGAGGTGAGGGTAATAGC+AGG 0.615642 tig0017060:+50185 None:intergenic
AATCTTCCACAAACTTCGGT+AGG 0.620192 tig0017060:+50927 None:intergenic
GTCCAAGTTCGGTGTCAACA+GGG 0.625604 tig0017060:+51014 None:intergenic
ATGAAATGGATCGGGCGCGG+TGG 0.626352 tig0017060:-50701 Msa1360420:CDS
GGAGGAACGTCGTGATAAGG+TGG 0.627902 tig0017060:+51651 None:intergenic
GACCAGGAGGAACGTTAGTG+CGG 0.628753 tig0017060:+51410 None:intergenic
GGTTAACACCGAACAAAGCA+CGG 0.629486 tig0017060:+51035 None:intergenic
GAAACTGAGGATCTTATAGG+TGG 0.630333 tig0017060:+51619 None:intergenic
GAAGCTTGATCTCTTTAGTG+AGG 0.631938 tig0017060:+50169 None:intergenic
TTGATGAAATGGATCGGGCG+CGG 0.633244 tig0017060:-50704 Msa1360420:CDS
ACACCTTCTACAGAACTCAC+TGG 0.635223 tig0017060:-51277 Msa1360420:CDS
TTAGGTCCAGTACTGAAACT+GGG 0.653363 tig0017060:-50950 Msa1360420:CDS
GTTGCATACAAAATTAGCGA+CGG 0.661214 tig0017060:-50672 Msa1360420:CDS
TGGCGGGGAGATTACTATGG+CGG 0.671730 tig0017060:-50624 Msa1360420:CDS
TGAGAGATGGAGACTTGGAA+AGG 0.672847 tig0017060:+51586 None:intergenic
GGAGCAATTAGATCTGCTGG+CGG 0.676095 tig0017060:-50641 Msa1360420:CDS
CAAAAGTCTTGAAATCAATG+TGG 0.688379 tig0017060:+50271 None:intergenic
AAGGGATGCCATAGTCACCA+GGG 0.700881 tig0017060:+51530 None:intergenic
TTCCTCGAGAGCAAATCCCG+AGG 0.708927 tig0017060:+50826 None:intergenic
CCTTCTACAGAACTCACTGG+TGG 0.709735 tig0017060:-51274 Msa1360420:CDS
TATGCCGTTGATGAAATCGG+TGG 0.719714 tig0017060:-50591 Msa1360420:CDS
GTATGTACCTGTGAAGACAT+CGG 0.723042 tig0017060:+51300 None:intergenic
TGAGCTATGAAAGGACCAGG+AGG 0.748813 tig0017060:+51397 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAATCATAAAGTCTT+TGG + tig0017060:51032-51051 None:intergenic 20.0%
!!! TTTTTCCTAATTTGATGAAA+TGG - tig0017060:51169-51188 Msa1360420:CDS 20.0%
!!! AAATCATGAAAATGGTTTTT+TGG - tig0017060:51389-51408 Msa1360420:CDS 20.0%
!! AAAAGAAATCATAAAGTCTT+TGG + tig0017060:51032-51051 None:intergenic 20.0%
!!! TTTTTCCTAATTTGATGAAA+TGG - tig0017060:51169-51188 Msa1360420:CDS 20.0%
!!! AAATCATGAAAATGGTTTTT+TGG - tig0017060:51389-51408 Msa1360420:CDS 20.0%
!!! TAGAGAGTTTTTTAATGCTT+TGG - tig0017060:50753-50772 Msa1360420:CDS 25.0%
!!! AAATGGGTTTTATTTCAGTT+AGG - tig0017060:50916-50935 Msa1360420:CDS 25.0%
! GTGATTGAAAATCATGAAAA+TGG - tig0017060:51381-51400 Msa1360420:CDS 25.0%
!!! AATGGTTTTTTGGTTAAGAA+AGG - tig0017060:51399-51418 Msa1360420:CDS 25.0%
!!! TAGAGAGTTTTTTAATGCTT+TGG - tig0017060:50753-50772 Msa1360420:CDS 25.0%
!!! AAATGGGTTTTATTTCAGTT+AGG - tig0017060:50916-50935 Msa1360420:CDS 25.0%
! GTGATTGAAAATCATGAAAA+TGG - tig0017060:51381-51400 Msa1360420:CDS 25.0%
!!! AATGGTTTTTTGGTTAAGAA+AGG - tig0017060:51399-51418 Msa1360420:CDS 25.0%
GGTTGTAGAAATAGTCTAAA+CGG + tig0017060:50399-50418 None:intergenic 30.0%
!! TTAGACTATTTCTACAACCA+AGG - tig0017060:50400-50419 Msa1360420:CDS 30.0%
TGCTGATAATAATGATCAAG+CGG - tig0017060:50810-50829 Msa1360420:CDS 30.0%
TCCAAAAATGGTTCAGAAAT+GGG - tig0017060:50900-50919 Msa1360420:CDS 30.0%
ATAGAATCTTCCACAAACTT+CGG + tig0017060:50964-50983 None:intergenic 30.0%
! ATAATTTTCGTCTCCCATTT+CGG - tig0017060:50989-51008 Msa1360420:CDS 30.0%
! TGATTTCTTTTATGCTTCCT+CGG - tig0017060:51041-51060 Msa1360420:CDS 30.0%
CCTAATTTGATGAAATGGAT+CGG - tig0017060:51174-51193 Msa1360420:CDS 30.0%
CTAATTTGATGAAATGGATC+GGG - tig0017060:51175-51194 Msa1360420:CDS 30.0%
TTTGCTCTTCCAAATTGTAA+TGG + tig0017060:51351-51370 None:intergenic 30.0%
TACAATTTGGAAGAGCAAAA+AGG - tig0017060:51352-51371 Msa1360420:CDS 30.0%
ACAATTTGGAAGAGCAAAAA+GGG - tig0017060:51353-51372 Msa1360420:CDS 30.0%
! AAGAAAGGTGAATTGTTGTT+AGG - tig0017060:51414-51433 Msa1360420:CDS 30.0%
TTAGGATCTTTAGTAGCAAA+AGG + tig0017060:51447-51466 None:intergenic 30.0%
TCTGCTCTATCAAAAATCTT+AGG + tig0017060:51465-51484 None:intergenic 30.0%
! TAAGATTTTTGATAGAGCAG+AGG - tig0017060:51464-51483 Msa1360420:CDS 30.0%
TTTGTTGCAGATAGATTTGT+TGG - tig0017060:51489-51508 Msa1360420:CDS 30.0%
AATTGTTGAAACATGTGCTT+TGG - tig0017060:51526-51545 Msa1360420:CDS 30.0%
CAAAAGTCTTGAAATCAATG+TGG + tig0017060:51616-51635 None:intergenic 30.0%
!!! CACATTGATTTCAAGACTTT+TGG - tig0017060:51614-51633 Msa1360420:CDS 30.0%
!! TGGTTGTTGAACTTTTTCTT+AGG - tig0017060:51634-51653 Msa1360420:CDS 30.0%
ATTTCCAACTTGAATCTCAA+AGG + tig0017060:51667-51686 None:intergenic 30.0%
GGTTGTAGAAATAGTCTAAA+CGG + tig0017060:50399-50418 None:intergenic 30.0%
!! TTAGACTATTTCTACAACCA+AGG - tig0017060:50400-50419 Msa1360420:CDS 30.0%
TGCTGATAATAATGATCAAG+CGG - tig0017060:50810-50829 Msa1360420:CDS 30.0%
TCCAAAAATGGTTCAGAAAT+GGG - tig0017060:50900-50919 Msa1360420:CDS 30.0%
ATAGAATCTTCCACAAACTT+CGG + tig0017060:50964-50983 None:intergenic 30.0%
! ATAATTTTCGTCTCCCATTT+CGG - tig0017060:50989-51008 Msa1360420:CDS 30.0%
! TGATTTCTTTTATGCTTCCT+CGG - tig0017060:51041-51060 Msa1360420:CDS 30.0%
CCTAATTTGATGAAATGGAT+CGG - tig0017060:51174-51193 Msa1360420:CDS 30.0%
CTAATTTGATGAAATGGATC+GGG - tig0017060:51175-51194 Msa1360420:CDS 30.0%
TTTGCTCTTCCAAATTGTAA+TGG + tig0017060:51351-51370 None:intergenic 30.0%
TACAATTTGGAAGAGCAAAA+AGG - tig0017060:51352-51371 Msa1360420:CDS 30.0%
ACAATTTGGAAGAGCAAAAA+GGG - tig0017060:51353-51372 Msa1360420:CDS 30.0%
! AAGAAAGGTGAATTGTTGTT+AGG - tig0017060:51414-51433 Msa1360420:CDS 30.0%
TTAGGATCTTTAGTAGCAAA+AGG + tig0017060:51447-51466 None:intergenic 30.0%
TCTGCTCTATCAAAAATCTT+AGG + tig0017060:51465-51484 None:intergenic 30.0%
! TAAGATTTTTGATAGAGCAG+AGG - tig0017060:51464-51483 Msa1360420:CDS 30.0%
TTTGTTGCAGATAGATTTGT+TGG - tig0017060:51489-51508 Msa1360420:CDS 30.0%
AATTGTTGAAACATGTGCTT+TGG - tig0017060:51526-51545 Msa1360420:CDS 30.0%
CAAAAGTCTTGAAATCAATG+TGG + tig0017060:51616-51635 None:intergenic 30.0%
!!! CACATTGATTTCAAGACTTT+TGG - tig0017060:51614-51633 Msa1360420:CDS 30.0%
!! TGGTTGTTGAACTTTTTCTT+AGG - tig0017060:51634-51653 Msa1360420:CDS 30.0%
ATTTCCAACTTGAATCTCAA+AGG + tig0017060:51667-51686 None:intergenic 30.0%
!!! TTTTGGTGTTTGAGGAGATT+AGG + tig0017060:50199-50218 None:intergenic 35.0%
! TCTGAAACTGAGGATCTTAT+AGG + tig0017060:50271-50290 None:intergenic 35.0%
TAGTCTAAACGGTCTTTGTA+GGG + tig0017060:50388-50407 None:intergenic 35.0%
ATAGTCTAAACGGTCTTTGT+AGG + tig0017060:50389-50408 None:intergenic 35.0%
! AGATGGTTGACTGGTATTTT+TGG + tig0017060:50453-50472 None:intergenic 35.0%
!!! TTAGGGTTTTGAGCTATGAA+AGG + tig0017060:50499-50518 None:intergenic 35.0%
! TTCTTGAGCTGTTCATGTTT+TGG + tig0017060:50670-50689 None:intergenic 35.0%
CTATAACATGACTGAAACTC+TGG + tig0017060:50736-50755 None:intergenic 35.0%
GTCCAAAAATGGTTCAGAAA+TGG - tig0017060:50899-50918 Msa1360420:CDS 35.0%
! ACCCATTTCTGAACCATTTT+TGG + tig0017060:50904-50923 None:intergenic 35.0%
CTTTCTTAATGAGCCGAAAT+GGG + tig0017060:51005-51024 None:intergenic 35.0%
TCTTTCTTAATGAGCCGAAA+TGG + tig0017060:51006-51025 None:intergenic 35.0%
! GATTTCTTTTATGCTTCCTC+GGG - tig0017060:51042-51061 Msa1360420:CDS 35.0%
TTTAGGTGTTTCAAAAGAGG+AGG - tig0017060:51089-51108 Msa1360420:CDS 35.0%
!!! GCAACGTGTTTTAATTCGTT+TGG - tig0017060:51132-51151 Msa1360420:CDS 35.0%
!!! ACGTGTTTTAATTCGTTTGG+CGG - tig0017060:51135-51154 Msa1360420:CDS 35.0%
CCGATCCATTTCATCAAATT+AGG + tig0017060:51177-51196 None:intergenic 35.0%
GTTGCATACAAAATTAGCGA+CGG - tig0017060:51212-51231 Msa1360420:CDS 35.0%
AAATTAGCGACGGAAATTAG+AGG - tig0017060:51222-51241 Msa1360420:CDS 35.0%
! GAATATGCCGTTGATGAAAT+CGG - tig0017060:51290-51309 Msa1360420:CDS 35.0%
!! TATACCACCGATTTCATCAA+CGG + tig0017060:51300-51319 None:intergenic 35.0%
! CTTCCAAATTGTAATGGAAC+CGG + tig0017060:51345-51364 None:intergenic 35.0%
!! GATAGATTTGTTGGTGATGA+AGG - tig0017060:51498-51517 Msa1360420:CDS 35.0%
AAACATGTGCTTTGGTCTAA+TGG - tig0017060:51534-51553 Msa1360420:CDS 35.0%
AATCTCAATCTCCAACTGTT+GGG - tig0017060:51562-51581 Msa1360420:CDS 35.0%
CATTGTTTATTCCCAACAGT+TGG + tig0017060:51576-51595 None:intergenic 35.0%
!! GATTCCTTTGAGATTCAAGT+TGG - tig0017060:51660-51679 Msa1360420:CDS 35.0%
! CAAGTTGGAAATTCACCTTT+AGG - tig0017060:51675-51694 Msa1360420:CDS 35.0%
!!! TTTTGGTGTTTGAGGAGATT+AGG + tig0017060:50199-50218 None:intergenic 35.0%
! TCTGAAACTGAGGATCTTAT+AGG + tig0017060:50271-50290 None:intergenic 35.0%
TAGTCTAAACGGTCTTTGTA+GGG + tig0017060:50388-50407 None:intergenic 35.0%
ATAGTCTAAACGGTCTTTGT+AGG + tig0017060:50389-50408 None:intergenic 35.0%
! AGATGGTTGACTGGTATTTT+TGG + tig0017060:50453-50472 None:intergenic 35.0%
!!! TTAGGGTTTTGAGCTATGAA+AGG + tig0017060:50499-50518 None:intergenic 35.0%
! TTCTTGAGCTGTTCATGTTT+TGG + tig0017060:50670-50689 None:intergenic 35.0%
CTATAACATGACTGAAACTC+TGG + tig0017060:50736-50755 None:intergenic 35.0%
GTCCAAAAATGGTTCAGAAA+TGG - tig0017060:50899-50918 Msa1360420:CDS 35.0%
! ACCCATTTCTGAACCATTTT+TGG + tig0017060:50904-50923 None:intergenic 35.0%
CTTTCTTAATGAGCCGAAAT+GGG + tig0017060:51005-51024 None:intergenic 35.0%
TCTTTCTTAATGAGCCGAAA+TGG + tig0017060:51006-51025 None:intergenic 35.0%
! GATTTCTTTTATGCTTCCTC+GGG - tig0017060:51042-51061 Msa1360420:CDS 35.0%
TTTAGGTGTTTCAAAAGAGG+AGG - tig0017060:51089-51108 Msa1360420:CDS 35.0%
!!! GCAACGTGTTTTAATTCGTT+TGG - tig0017060:51132-51151 Msa1360420:CDS 35.0%
!!! ACGTGTTTTAATTCGTTTGG+CGG - tig0017060:51135-51154 Msa1360420:CDS 35.0%
CCGATCCATTTCATCAAATT+AGG + tig0017060:51177-51196 None:intergenic 35.0%
GTTGCATACAAAATTAGCGA+CGG - tig0017060:51212-51231 Msa1360420:CDS 35.0%
AAATTAGCGACGGAAATTAG+AGG - tig0017060:51222-51241 Msa1360420:CDS 35.0%
! GAATATGCCGTTGATGAAAT+CGG - tig0017060:51290-51309 Msa1360420:CDS 35.0%
!! TATACCACCGATTTCATCAA+CGG + tig0017060:51300-51319 None:intergenic 35.0%
! CTTCCAAATTGTAATGGAAC+CGG + tig0017060:51345-51364 None:intergenic 35.0%
!! GATAGATTTGTTGGTGATGA+AGG - tig0017060:51498-51517 Msa1360420:CDS 35.0%
AAACATGTGCTTTGGTCTAA+TGG - tig0017060:51534-51553 Msa1360420:CDS 35.0%
AATCTCAATCTCCAACTGTT+GGG - tig0017060:51562-51581 Msa1360420:CDS 35.0%
CATTGTTTATTCCCAACAGT+TGG + tig0017060:51576-51595 None:intergenic 35.0%
!! GATTCCTTTGAGATTCAAGT+TGG - tig0017060:51660-51679 Msa1360420:CDS 35.0%
! CAAGTTGGAAATTCACCTTT+AGG - tig0017060:51675-51694 Msa1360420:CDS 35.0%
AGAAGGAGTTGAAAGAGTAG+AGG + tig0017060:50176-50195 None:intergenic 40.0%
TGTTTGAGGAGATTAGGAGA+AGG + tig0017060:50193-50212 None:intergenic 40.0%
!!! AGGGTCTTTTTTGGTGTTTG+AGG + tig0017060:50207-50226 None:intergenic 40.0%
TCTTATAGGTGGAAGAAAGG+TGG + tig0017060:50257-50276 None:intergenic 40.0%
GGATCTTATAGGTGGAAGAA+AGG + tig0017060:50260-50279 None:intergenic 40.0%
GAAACTGAGGATCTTATAGG+TGG + tig0017060:50268-50287 None:intergenic 40.0%
!!! AGGTGGTTTTTCTGAAACTG+AGG + tig0017060:50281-50300 None:intergenic 40.0%
! CATAGTCACCAGGGATTTTA+CGG + tig0017060:50348-50367 None:intergenic 40.0%
CTTTGTAGGGTTGGATGAAA+GGG + tig0017060:50375-50394 None:intergenic 40.0%
TCTTTGTAGGGTTGGATGAA+AGG + tig0017060:50376-50395 None:intergenic 40.0%
! TGAAGTATTCATCACGACCT+TGG + tig0017060:50420-50439 None:intergenic 40.0%
! TTTTGAGCTATGAAAGGACC+AGG + tig0017060:50493-50512 None:intergenic 40.0%
! CAAGGAGTACAACTACGTTA+GGG + tig0017060:50516-50535 None:intergenic 40.0%
! TCAAGGAGTACAACTACGTT+AGG + tig0017060:50517-50536 None:intergenic 40.0%
AACGTAGTTGTACTCCTTGA+TGG - tig0017060:50517-50536 Msa1360420:CDS 40.0%
GATAAAACCGATGTCTTCAC+AGG - tig0017060:50577-50596 Msa1360420:CDS 40.0%
GTATGTACCTGTGAAGACAT+CGG + tig0017060:50587-50606 None:intergenic 40.0%
!!! TGTTCATGTTTTGGTTCGGA+GGG + tig0017060:50661-50680 None:intergenic 40.0%
!!! GAGCTGTTCATGTTTTGGTT+CGG + tig0017060:50665-50684 None:intergenic 40.0%
CATGACGACTACGTGATTTA+AGG + tig0017060:50708-50727 None:intergenic 40.0%
!! GAGAGTCAACTTGCTGAAAA+TGG - tig0017060:50775-50794 Msa1360420:CDS 40.0%
! TTCTTGAACCGTGCTTTGTT+CGG - tig0017060:50841-50860 Msa1360420:CDS 40.0%
! TTAGGTCCAGTACTGAAACT+GGG - tig0017060:50934-50953 Msa1360420:CDS 40.0%
AATCTTCCACAAACTTCGGT+AGG + tig0017060:50960-50979 None:intergenic 40.0%
GCGTTTAGGTGTTTCAAAAG+AGG - tig0017060:51086-51105 Msa1360420:CDS 40.0%
!!! CGTGTTTTAATTCGTTTGGC+GGG - tig0017060:51136-51155 Msa1360420:CDS 40.0%
!! AGCTTTTCGTATTGATCCAC+CGG - tig0017060:51323-51342 Msa1360420:CDS 40.0%
ACAGTTGGAGATTGAGATTC+TGG + tig0017060:51561-51580 None:intergenic 40.0%
GAATCTCAATCTCCAACTGT+TGG - tig0017060:51561-51580 Msa1360420:CDS 40.0%
GTTGGGAATAAACAATGTGC+TGG - tig0017060:51579-51598 Msa1360420:CDS 40.0%
TGATCTCTTTAGTGAGGTGA+GGG + tig0017060:51712-51731 None:intergenic 40.0%
TTGATCTCTTTAGTGAGGTG+AGG + tig0017060:51713-51732 None:intergenic 40.0%
GAAGCTTGATCTCTTTAGTG+AGG + tig0017060:51718-51737 None:intergenic 40.0%
AGAAGGAGTTGAAAGAGTAG+AGG + tig0017060:50176-50195 None:intergenic 40.0%
TGTTTGAGGAGATTAGGAGA+AGG + tig0017060:50193-50212 None:intergenic 40.0%
!!! AGGGTCTTTTTTGGTGTTTG+AGG + tig0017060:50207-50226 None:intergenic 40.0%
TCTTATAGGTGGAAGAAAGG+TGG + tig0017060:50257-50276 None:intergenic 40.0%
GGATCTTATAGGTGGAAGAA+AGG + tig0017060:50260-50279 None:intergenic 40.0%
GAAACTGAGGATCTTATAGG+TGG + tig0017060:50268-50287 None:intergenic 40.0%
!!! AGGTGGTTTTTCTGAAACTG+AGG + tig0017060:50281-50300 None:intergenic 40.0%
! CATAGTCACCAGGGATTTTA+CGG + tig0017060:50348-50367 None:intergenic 40.0%
CTTTGTAGGGTTGGATGAAA+GGG + tig0017060:50375-50394 None:intergenic 40.0%
TCTTTGTAGGGTTGGATGAA+AGG + tig0017060:50376-50395 None:intergenic 40.0%
! TGAAGTATTCATCACGACCT+TGG + tig0017060:50420-50439 None:intergenic 40.0%
! TTTTGAGCTATGAAAGGACC+AGG + tig0017060:50493-50512 None:intergenic 40.0%
! CAAGGAGTACAACTACGTTA+GGG + tig0017060:50516-50535 None:intergenic 40.0%
! TCAAGGAGTACAACTACGTT+AGG + tig0017060:50517-50536 None:intergenic 40.0%
AACGTAGTTGTACTCCTTGA+TGG - tig0017060:50517-50536 Msa1360420:CDS 40.0%
GATAAAACCGATGTCTTCAC+AGG - tig0017060:50577-50596 Msa1360420:CDS 40.0%
GTATGTACCTGTGAAGACAT+CGG + tig0017060:50587-50606 None:intergenic 40.0%
!!! TGTTCATGTTTTGGTTCGGA+GGG + tig0017060:50661-50680 None:intergenic 40.0%
!!! GAGCTGTTCATGTTTTGGTT+CGG + tig0017060:50665-50684 None:intergenic 40.0%
CATGACGACTACGTGATTTA+AGG + tig0017060:50708-50727 None:intergenic 40.0%
!! GAGAGTCAACTTGCTGAAAA+TGG - tig0017060:50775-50794 Msa1360420:CDS 40.0%
! TTCTTGAACCGTGCTTTGTT+CGG - tig0017060:50841-50860 Msa1360420:CDS 40.0%
! TTAGGTCCAGTACTGAAACT+GGG - tig0017060:50934-50953 Msa1360420:CDS 40.0%
AATCTTCCACAAACTTCGGT+AGG + tig0017060:50960-50979 None:intergenic 40.0%
GCGTTTAGGTGTTTCAAAAG+AGG - tig0017060:51086-51105 Msa1360420:CDS 40.0%
!!! CGTGTTTTAATTCGTTTGGC+GGG - tig0017060:51136-51155 Msa1360420:CDS 40.0%
!! AGCTTTTCGTATTGATCCAC+CGG - tig0017060:51323-51342 Msa1360420:CDS 40.0%
ACAGTTGGAGATTGAGATTC+TGG + tig0017060:51561-51580 None:intergenic 40.0%
GAATCTCAATCTCCAACTGT+TGG - tig0017060:51561-51580 Msa1360420:CDS 40.0%
GTTGGGAATAAACAATGTGC+TGG - tig0017060:51579-51598 Msa1360420:CDS 40.0%
TGATCTCTTTAGTGAGGTGA+GGG + tig0017060:51712-51731 None:intergenic 40.0%
TTGATCTCTTTAGTGAGGTG+AGG + tig0017060:51713-51732 None:intergenic 40.0%
GAAGCTTGATCTCTTTAGTG+AGG + tig0017060:51718-51737 None:intergenic 40.0%
!!! TGGTGGAAGAGGGTCTTTTT+TGG + tig0017060:50216-50235 None:intergenic 45.0%
TATAGGTGGAAGAAAGGTGG+AGG + tig0017060:50254-50273 None:intergenic 45.0%
TGAGAGATGGAGACTTGGAA+AGG + tig0017060:50301-50320 None:intergenic 45.0%
GGTTGTTTGTGGTTGAGAGA+TGG + tig0017060:50314-50333 None:intergenic 45.0%
ATCGGAAGCTTGGTTGTTTG+TGG + tig0017060:50325-50344 None:intergenic 45.0%
! GATTTTACGGATCGGAAGCT+TGG + tig0017060:50335-50354 None:intergenic 45.0%
! TCACCAGGGATTTTACGGAT+CGG + tig0017060:50343-50362 None:intergenic 45.0%
CGTAAAATCCCTGGTGACTA+TGG - tig0017060:50346-50365 Msa1360420:CDS 45.0%
CTAAACGGTCTTTGTAGGGT+TGG + tig0017060:50384-50403 None:intergenic 45.0%
ACACCTTCTACAGAACTCAC+TGG - tig0017060:50607-50626 Msa1360420:CDS 45.0%
!!! CTGTTCATGTTTTGGTTCGG+AGG + tig0017060:50662-50681 None:intergenic 45.0%
GGTTAACACCGAACAAAGCA+CGG + tig0017060:50852-50871 None:intergenic 45.0%
TGGACTTGACGGTCCAAAAA+TGG - tig0017060:50888-50907 Msa1360420:CDS 45.0%
! GTTAGGTCCAGTACTGAAAC+TGG - tig0017060:50933-50952 Msa1360420:CDS 45.0%
AGAGGAGCAATTAGATCTGC+TGG - tig0017060:51240-51259 Msa1360420:CDS 45.0%
CATCAACGGCATATTCTCCA+TGG + tig0017060:51286-51305 None:intergenic 45.0%
! TATGCCGTTGATGAAATCGG+TGG - tig0017060:51293-51312 Msa1360420:CDS 45.0%
! CCAAATTGTAATGGAACCGG+TGG + tig0017060:51342-51361 None:intergenic 45.0%
!! CCACCGGTTCCATTACAATT+TGG - tig0017060:51339-51358 Msa1360420:CDS 45.0%
TGGAAGAGCAAAAAGGGACA+TGG - tig0017060:51359-51378 Msa1360420:CDS 45.0%
AGGGTAATAGCAGGACCTAA+AGG + tig0017060:51693-51712 None:intergenic 45.0%
!!! TGGTGGAAGAGGGTCTTTTT+TGG + tig0017060:50216-50235 None:intergenic 45.0%
TATAGGTGGAAGAAAGGTGG+AGG + tig0017060:50254-50273 None:intergenic 45.0%
TGAGAGATGGAGACTTGGAA+AGG + tig0017060:50301-50320 None:intergenic 45.0%
GGTTGTTTGTGGTTGAGAGA+TGG + tig0017060:50314-50333 None:intergenic 45.0%
ATCGGAAGCTTGGTTGTTTG+TGG + tig0017060:50325-50344 None:intergenic 45.0%
! GATTTTACGGATCGGAAGCT+TGG + tig0017060:50335-50354 None:intergenic 45.0%
! TCACCAGGGATTTTACGGAT+CGG + tig0017060:50343-50362 None:intergenic 45.0%
CGTAAAATCCCTGGTGACTA+TGG - tig0017060:50346-50365 Msa1360420:CDS 45.0%
CTAAACGGTCTTTGTAGGGT+TGG + tig0017060:50384-50403 None:intergenic 45.0%
ACACCTTCTACAGAACTCAC+TGG - tig0017060:50607-50626 Msa1360420:CDS 45.0%
!!! CTGTTCATGTTTTGGTTCGG+AGG + tig0017060:50662-50681 None:intergenic 45.0%
GGTTAACACCGAACAAAGCA+CGG + tig0017060:50852-50871 None:intergenic 45.0%
TGGACTTGACGGTCCAAAAA+TGG - tig0017060:50888-50907 Msa1360420:CDS 45.0%
! GTTAGGTCCAGTACTGAAAC+TGG - tig0017060:50933-50952 Msa1360420:CDS 45.0%
AGAGGAGCAATTAGATCTGC+TGG - tig0017060:51240-51259 Msa1360420:CDS 45.0%
CATCAACGGCATATTCTCCA+TGG + tig0017060:51286-51305 None:intergenic 45.0%
! TATGCCGTTGATGAAATCGG+TGG - tig0017060:51293-51312 Msa1360420:CDS 45.0%
! CCAAATTGTAATGGAACCGG+TGG + tig0017060:51342-51361 None:intergenic 45.0%
!! CCACCGGTTCCATTACAATT+TGG - tig0017060:51339-51358 Msa1360420:CDS 45.0%
TGGAAGAGCAAAAAGGGACA+TGG - tig0017060:51359-51378 Msa1360420:CDS 45.0%
AGGGTAATAGCAGGACCTAA+AGG + tig0017060:51693-51712 None:intergenic 45.0%
!! CGTGATAAGGTGGTGGAAGA+GGG + tig0017060:50226-50245 None:intergenic 50.0%
!! TCGTGATAAGGTGGTGGAAG+AGG + tig0017060:50227-50246 None:intergenic 50.0%
GAGATGGAGACTTGGAAAGG+TGG + tig0017060:50298-50317 None:intergenic 50.0%
GTGGTTGAGAGATGGAGACT+TGG + tig0017060:50306-50325 None:intergenic 50.0%
CTTCCGATCCGTAAAATCCC+TGG - tig0017060:50337-50356 Msa1360420:CDS 50.0%
AAGGGATGCCATAGTCACCA+GGG + tig0017060:50357-50376 None:intergenic 50.0%
AAAGGGATGCCATAGTCACC+AGG + tig0017060:50358-50377 None:intergenic 50.0%
TAGTGCGGAAGATGGTTGAC+TGG + tig0017060:50462-50481 None:intergenic 50.0%
AGGAACGTTAGTGCGGAAGA+TGG + tig0017060:50470-50489 None:intergenic 50.0%
TGAGCTATGAAAGGACCAGG+AGG + tig0017060:50490-50509 None:intergenic 50.0%
! CGGGGAAGCTTTTACCATCA+AGG + tig0017060:50534-50553 None:intergenic 50.0%
CCACCAGTGAGTTCTGTAGA+AGG + tig0017060:50613-50632 None:intergenic 50.0%
CCTTCTACAGAACTCACTGG+TGG - tig0017060:50610-50629 Msa1360420:CDS 50.0%
!!! GTTTTGGTTCGGAGGGATCA+AGG + tig0017060:50654-50673 None:intergenic 50.0%
AACCCTGTTGACACCGAACT+TGG - tig0017060:50868-50887 Msa1360420:CDS 50.0%
!! GTCCAAGTTCGGTGTCAACA+GGG + tig0017060:50873-50892 None:intergenic 50.0%
!! AGTCCAAGTTCGGTGTCAAC+AGG + tig0017060:50874-50893 None:intergenic 50.0%
GACACCGAACTTGGACTTGA+CGG - tig0017060:50877-50896 Msa1360420:CDS 50.0%
TGGACCGTCAAGTCCAAGTT+CGG + tig0017060:50884-50903 None:intergenic 50.0%
TTGATGAAATGGATCGGGCG+CGG - tig0017060:51180-51199 Msa1360420:CDS 50.0%
GGAGCAATTAGATCTGCTGG+CGG - tig0017060:51243-51262 Msa1360420:CDS 50.0%
GAGCAATTAGATCTGCTGGC+GGG - tig0017060:51244-51263 Msa1360420:CDS 50.0%
AGCAATTAGATCTGCTGGCG+GGG - tig0017060:51245-51264 Msa1360420:CDS 50.0%
AGTGAGGTGAGGGTAATAGC+AGG + tig0017060:51702-51721 None:intergenic 50.0%
!! CGTGATAAGGTGGTGGAAGA+GGG + tig0017060:50226-50245 None:intergenic 50.0%
!! TCGTGATAAGGTGGTGGAAG+AGG + tig0017060:50227-50246 None:intergenic 50.0%
GAGATGGAGACTTGGAAAGG+TGG + tig0017060:50298-50317 None:intergenic 50.0%
GTGGTTGAGAGATGGAGACT+TGG + tig0017060:50306-50325 None:intergenic 50.0%
CTTCCGATCCGTAAAATCCC+TGG - tig0017060:50337-50356 Msa1360420:CDS 50.0%
AAGGGATGCCATAGTCACCA+GGG + tig0017060:50357-50376 None:intergenic 50.0%
AAAGGGATGCCATAGTCACC+AGG + tig0017060:50358-50377 None:intergenic 50.0%
TAGTGCGGAAGATGGTTGAC+TGG + tig0017060:50462-50481 None:intergenic 50.0%
AGGAACGTTAGTGCGGAAGA+TGG + tig0017060:50470-50489 None:intergenic 50.0%
TGAGCTATGAAAGGACCAGG+AGG + tig0017060:50490-50509 None:intergenic 50.0%
! CGGGGAAGCTTTTACCATCA+AGG + tig0017060:50534-50553 None:intergenic 50.0%
CCACCAGTGAGTTCTGTAGA+AGG + tig0017060:50613-50632 None:intergenic 50.0%
CCTTCTACAGAACTCACTGG+TGG - tig0017060:50610-50629 Msa1360420:CDS 50.0%
!!! GTTTTGGTTCGGAGGGATCA+AGG + tig0017060:50654-50673 None:intergenic 50.0%
AACCCTGTTGACACCGAACT+TGG - tig0017060:50868-50887 Msa1360420:CDS 50.0%
!! GTCCAAGTTCGGTGTCAACA+GGG + tig0017060:50873-50892 None:intergenic 50.0%
!! AGTCCAAGTTCGGTGTCAAC+AGG + tig0017060:50874-50893 None:intergenic 50.0%
GACACCGAACTTGGACTTGA+CGG - tig0017060:50877-50896 Msa1360420:CDS 50.0%
TGGACCGTCAAGTCCAAGTT+CGG + tig0017060:50884-50903 None:intergenic 50.0%
TTGATGAAATGGATCGGGCG+CGG - tig0017060:51180-51199 Msa1360420:CDS 50.0%
GGAGCAATTAGATCTGCTGG+CGG - tig0017060:51243-51262 Msa1360420:CDS 50.0%
GAGCAATTAGATCTGCTGGC+GGG - tig0017060:51244-51263 Msa1360420:CDS 50.0%
AGCAATTAGATCTGCTGGCG+GGG - tig0017060:51245-51264 Msa1360420:CDS 50.0%
AGTGAGGTGAGGGTAATAGC+AGG + tig0017060:51702-51721 None:intergenic 50.0%
GGAACGTCGTGATAAGGTGG+TGG + tig0017060:50233-50252 None:intergenic 55.0%
GGAGGAACGTCGTGATAAGG+TGG + tig0017060:50236-50255 None:intergenic 55.0%
GGTGGAGGAACGTCGTGATA+AGG + tig0017060:50239-50258 None:intergenic 55.0%
TTCCGCACTAACGTTCCTCC+TGG - tig0017060:50472-50491 Msa1360420:CDS 55.0%
GACCAGGAGGAACGTTAGTG+CGG + tig0017060:50477-50496 None:intergenic 55.0%
TTCGATGCGTCGAAGAGGAC+GGG + tig0017060:50553-50572 None:intergenic 55.0%
CTTCGATGCGTCGAAGAGGA+CGG + tig0017060:50554-50573 None:intergenic 55.0%
CGATCTTCGATGCGTCGAAG+AGG + tig0017060:50558-50577 None:intergenic 55.0%
GGTAGGCCCAGTTTCAGTAC+TGG + tig0017060:50943-50962 None:intergenic 55.0%
ACTGGGCCTACCGAAGTTTG+TGG - tig0017060:50951-50970 Msa1360420:CDS 55.0%
! TTCCTCGGGATTTGCTCTCG+AGG - tig0017060:51056-51075 Msa1360420:CDS 55.0%
TTCCTCGAGAGCAAATCCCG+AGG + tig0017060:51061-51080 None:intergenic 55.0%
! CTCGAGGAAGCAGAGCGTTT+AGG - tig0017060:51072-51091 Msa1360420:CDS 55.0%
TGCTGGCGGGGAGATTACTA+TGG - tig0017060:51257-51276 Msa1360420:CDS 55.0%
TGGCGGGGAGATTACTATGG+CGG - tig0017060:51260-51279 Msa1360420:CDS 55.0%
GGAGATTACTATGGCGGCCA+TGG - tig0017060:51266-51285 Msa1360420:CDS 55.0%
GGAACGTCGTGATAAGGTGG+TGG + tig0017060:50233-50252 None:intergenic 55.0%
GGAGGAACGTCGTGATAAGG+TGG + tig0017060:50236-50255 None:intergenic 55.0%
GGTGGAGGAACGTCGTGATA+AGG + tig0017060:50239-50258 None:intergenic 55.0%
TTCCGCACTAACGTTCCTCC+TGG - tig0017060:50472-50491 Msa1360420:CDS 55.0%
GACCAGGAGGAACGTTAGTG+CGG + tig0017060:50477-50496 None:intergenic 55.0%
TTCGATGCGTCGAAGAGGAC+GGG + tig0017060:50553-50572 None:intergenic 55.0%
CTTCGATGCGTCGAAGAGGA+CGG + tig0017060:50554-50573 None:intergenic 55.0%
CGATCTTCGATGCGTCGAAG+AGG + tig0017060:50558-50577 None:intergenic 55.0%
GGTAGGCCCAGTTTCAGTAC+TGG + tig0017060:50943-50962 None:intergenic 55.0%
ACTGGGCCTACCGAAGTTTG+TGG - tig0017060:50951-50970 Msa1360420:CDS 55.0%
! TTCCTCGGGATTTGCTCTCG+AGG - tig0017060:51056-51075 Msa1360420:CDS 55.0%
TTCCTCGAGAGCAAATCCCG+AGG + tig0017060:51061-51080 None:intergenic 55.0%
! CTCGAGGAAGCAGAGCGTTT+AGG - tig0017060:51072-51091 Msa1360420:CDS 55.0%
TGCTGGCGGGGAGATTACTA+TGG - tig0017060:51257-51276 Msa1360420:CDS 55.0%
TGGCGGGGAGATTACTATGG+CGG - tig0017060:51260-51279 Msa1360420:CDS 55.0%
GGAGATTACTATGGCGGCCA+TGG - tig0017060:51266-51285 Msa1360420:CDS 55.0%
TCGATGCGTCGAAGAGGACG+GGG + tig0017060:50552-50571 None:intergenic 60.0%
ATGAAATGGATCGGGCGCGG+TGG - tig0017060:51183-51202 Msa1360420:CDS 60.0%
TCGATGCGTCGAAGAGGACG+GGG + tig0017060:50552-50571 None:intergenic 60.0%
ATGAAATGGATCGGGCGCGG+TGG - tig0017060:51183-51202 Msa1360420:CDS 60.0%
GGATCGGGCGCGGTGGAGTG+AGG - tig0017060:51190-51209 Msa1360420:CDS 75.0%
GGATCGGGCGCGGTGGAGTG+AGG - tig0017060:51190-51209 Msa1360420:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0017060 gene 50166 51740 50166 ID=Msa1360420;Name=Msa1360420
tig0017060 mRNA 50166 51740 50166 ID=Msa1360420-mRNA-1;Parent=Msa1360420;Name=Msa1360420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|524
tig0017060 exon 50166 51740 50166 ID=Msa1360420-mRNA-1:exon:11886;Parent=Msa1360420-mRNA-1
tig0017060 CDS 50166 51740 50166 ID=Msa1360420-mRNA-1:cds;Parent=Msa1360420-mRNA-1
Gene Sequence

>Msa1360420

ATGGCTTCCTCTACTCTTTCAACTCCTTCTCCTAATCTCCTCAAACACCAAAAAAGACCCTCTTCCACCACCTTATCACGACGTTCCTCCACCTTTCTTCCACCTATAAGATCCTCAGTTTCAGAAAAACCACCTTTCCAAGTCTCCATCTCTCAACCACAAACAACCAAGCTTCCGATCCGTAAAATCCCTGGTGACTATGGCATCCCTTTCATCCAACCCTACAAAGACCGTTTAGACTATTTCTACAACCAAGGTCGTGATGAATACTTCAAATCACGTATCCAAAAATACCAGTCAACCATCTTCCGCACTAACGTTCCTCCTGGTCCTTTCATAGCTCAAAACCCTAACGTAGTTGTACTCCTTGATGGTAAAAGCTTCCCCGTCCTCTTCGACGCATCGAAGATCGATAAAACCGATGTCTTCACAGGTACATACACACCTTCTACAGAACTCACTGGTGGTTATAGAGTTTTATCTTACCTTGATCCCTCCGAACCAAAACATGAACAGCTCAAGAAGTTGATGTTTTTTCTCCTTAAATCACGTAGTCGTCATGTTATTCCAGAGTTTCAGTCATGTTATAGAGAGTTTTTTAATGCTTTGGAGAGTCAACTTGCTGAAAATGGTAACGCTAGTTTTGCTGATAATAATGATCAAGCGGCATTTAATTTCTTGAACCGTGCTTTGTTCGGTGTTAACCCTGTTGACACCGAACTTGGACTTGACGGTCCAAAAATGGTTCAGAAATGGGTTTTATTTCAGTTAGGTCCAGTACTGAAACTGGGCCTACCGAAGTTTGTGGAAGATTCTATGATACATAATTTTCGTCTCCCATTTCGGCTCATTAAGAAAGATTACCAAAGACTTTATGATTTCTTTTATGCTTCCTCGGGATTTGCTCTCGAGGAAGCAGAGCGTTTAGGTGTTTCAAAAGAGGAGGCTTGTCATAATCTATTATTTGCAACGTGTTTTAATTCGTTTGGCGGGATTAAGCTGTTTTTTCCTAATTTGATGAAATGGATCGGGCGCGGTGGAGTGAGGTTGCATACAAAATTAGCGACGGAAATTAGAGGAGCAATTAGATCTGCTGGCGGGGAGATTACTATGGCGGCCATGGAGAATATGCCGTTGATGAAATCGGTGGTATACGAAGCTTTTCGTATTGATCCACCGGTTCCATTACAATTTGGAAGAGCAAAAAGGGACATGGTGATTGAAAATCATGAAAATGGTTTTTTGGTTAAGAAAGGTGAATTGTTGTTAGGATATCAACCTTTTGCTACTAAAGATCCTAAGATTTTTGATAGAGCAGAGGAATTTGTTGCAGATAGATTTGTTGGTGATGAAGGTGAGAAATTGTTGAAACATGTGCTTTGGTCTAATGGACCAGAATCTCAATCTCCAACTGTTGGGAATAAACAATGTGCTGGTAAAGATTTCACCACATTGATTTCAAGACTTTTGGTTGTTGAACTTTTTCTTAGGTATGATTCCTTTGAGATTCAAGTTGGAAATTCACCTTTAGGTCCTGCTATTACCCTCACCTCACTAAAGAGATCAAGCTTCTAG

Protein sequence

>Msa1360420

MASSTLSTPSPNLLKHQKRPSSTTLSRRSSTFLPPIRSSVSEKPPFQVSISQPQTTKLPIRKIPGDYGIPFIQPYKDRLDYFYNQGRDEYFKSRIQKYQSTIFRTNVPPGPFIAQNPNVVVLLDGKSFPVLFDASKIDKTDVFTGTYTPSTELTGGYRVLSYLDPSEPKHEQLKKLMFFLLKSRSRHVIPEFQSCYREFFNALESQLAENGNASFADNNDQAAFNFLNRALFGVNPVDTELGLDGPKMVQKWVLFQLGPVLKLGLPKFVEDSMIHNFRLPFRLIKKDYQRLYDFFYASSGFALEEAERLGVSKEEACHNLLFATCFNSFGGIKLFFPNLMKWIGRGGVRLHTKLATEIRGAIRSAGGEITMAAMENMPLMKSVVYEAFRIDPPVPLQFGRAKRDMVIENHENGFLVKKGELLLGYQPFATKDPKIFDRAEEFVADRFVGDEGEKLLKHVLWSNGPESQSPTVGNKQCAGKDFTTLISRLLVVELFLRYDSFEIQVGNSPLGPAITLTSLKRSSF*