AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407260 MtrunA17_Chr4g0054001 95.592 862 33 4 1 862 1 857 0.0 1642
Msa1407260 MtrunA17_Chr5g0401291 60.840 881 267 22 26 851 40 897 0.0 899
Msa1407260 MtrunA17_Chr8g0347491 60.314 446 159 8 404 842 615 1049 2.30e-162 501
Msa1407260 MtrunA17_Chr4g0045881 57.173 467 179 7 408 857 424 886 8.39e-160 489
Msa1407260 MtrunA17_Chr7g0249941 57.642 458 177 7 414 862 563 1012 1.73e-158 489
Msa1407260 MtrunA17_Chr4g0042081 46.467 467 221 9 414 859 531 989 7.94e-121 389
Msa1407260 MtrunA17_Chr1g0192111 47.009 468 207 8 361 820 461 895 4.17e-120 385
Msa1407260 MtrunA17_Chr2g0319201 47.020 453 200 9 410 839 386 821 4.82e-118 379
Msa1407260 MtrunA17_Chr4g0023611 48.252 429 201 6 414 831 397 815 1.27e-117 378
Msa1407260 MtrunA17_Chr2g0323071 45.346 419 208 7 412 818 311 720 3.99e-108 350
Msa1407260 MtrunA17_Chr5g0414941 39.862 434 227 9 419 824 414 841 4.77e-93 311
Msa1407260 MtrunA17_Chr8g0364331 33.489 642 353 19 211 825 139 733 5.24e-89 298
Msa1407260 MtrunA17_Chr3g0118231 37.529 437 253 7 399 828 228 651 1.02e-85 288
Msa1407260 MtrunA17_Chr4g0074091 27.554 323 194 7 419 735 792 1080 1.00e-31 134
Msa1407260 MtrunA17_Chr4g0061111 26.722 363 213 9 420 771 1171 1491 1.21e-29 127
Msa1407260 MtrunA17_Chr3g0091511 28.235 255 168 5 417 662 1581 1829 4.71e-27 119
Msa1407260 MtrunA17_Chr1g0150261 29.804 255 157 7 420 662 1365 1609 6.80e-27 118
Msa1407260 MtrunA17_Chr5g0409151 33.028 109 73 0 554 662 2 110 2.33e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407260 AT5G67470.1 70.742 458 116 5 398 852 443 885 0.0 635
Msa1407260 AT3G25500.1 61.949 431 149 4 417 842 595 1015 3.60e-171 524
Msa1407260 AT3G05470.1 49.878 409 188 6 418 818 469 868 3.16e-121 388
Msa1407260 AT5G48360.1 46.134 388 163 7 438 819 434 781 2.27e-95 317
Msa1407260 AT1G70140.1 39.953 428 232 6 419 829 305 724 7.53e-92 306
Msa1407260 AT1G59910.1 37.709 419 237 7 414 818 457 865 1.07e-82 285
Msa1407260 AT3G07540.1 39.310 435 207 6 391 818 450 834 1.21e-76 267
Msa1407260 AT1G24150.2 43.119 218 108 4 419 630 312 519 3.45e-46 174
Msa1407260 AT5G07740.1 31.250 256 160 5 415 662 1242 1489 3.00e-32 136
Msa1407260 AT5G07740.3 31.250 256 160 5 415 662 1220 1467 3.16e-32 136
Msa1407260 AT3G25493.1 54.839 93 42 0 750 842 45 137 2.03e-29 115
Msa1407260 AT1G31810.2 29.644 253 168 3 417 664 816 1063 4.98e-29 125
Msa1407260 AT1G31810.1 29.644 253 168 3 417 664 816 1063 4.98e-29 125
Msa1407260 AT4G15200.4 45.395 152 72 4 408 556 318 461 2.18e-28 120
Msa1407260 AT4G15200.2 45.395 152 72 4 408 556 319 462 2.29e-28 120
Msa1407260 AT5G07740.2 28.621 290 157 7 415 662 1242 1523 1.06e-27 121
Msa1407260 AT5G07770.1 28.800 250 155 4 420 662 192 425 2.92e-27 119
Msa1407260 AT5G07770.3 28.800 250 155 4 420 662 199 432 3.40e-27 119
Msa1407260 AT5G07770.4 28.800 250 155 4 420 662 58 291 5.04e-27 117
Msa1407260 AT5G07770.2 27.350 234 150 2 435 662 179 398 1.83e-24 110
Msa1407260 AT3G32400.2 27.559 254 170 6 417 662 93 340 6.81e-24 107
Msa1407260 AT5G07760.1 30.286 175 122 0 488 662 523 697 3.47e-23 106
Msa1407260 AT5G07760.2 30.286 175 122 0 488 662 523 697 3.78e-23 106
Msa1407260 AT5G07650.2 30.460 174 121 0 489 662 470 643 4.65e-22 102
Msa1407260 AT5G07650.2 26.106 226 141 8 417 631 59 269 1.24e-12 72.4
Msa1407260 AT2G25050.1 24.820 278 171 7 417 662 742 1013 1.07e-20 98.6
Msa1407260 AT3G32400.1 26.613 248 160 7 417 648 85 326 3.41e-18 89.4
Msa1407260 AT5G07650.1 27.273 198 120 1 489 662 470 667 3.63e-18 90.1
Msa1407260 AT5G07650.1 24.775 222 149 6 417 631 59 269 9.86e-13 72.8
Msa1407260 AT4G15200.3 39.474 114 60 3 408 518 319 426 2.64e-15 79.7

Find 237 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGACTTCCTAAATATTT+TGG 0.151719 tig0023279:-42563 Msa1407260:CDS
CAGTGCAGAGCTTTCAATTT+AGG 0.159064 tig0023279:+45231 None:intergenic
AGGGGCAACTAAATCAAATT+TGG 0.198108 tig0023279:+42321 None:intergenic
CAAGAAGTTTGAGGAATAAT+TGG 0.213282 tig0023279:+43154 None:intergenic
AGACTTGATCCAAAATATTT+AGG 0.240044 tig0023279:+42554 None:intergenic
GAAGAGAATTTCGGCCTTCT+AGG 0.240553 tig0023279:+45507 None:intergenic
TGCAGTTGGATTTGCAATTC+TGG 0.249890 tig0023279:+46214 None:intergenic
AAGAAGTTCCCTTGCATATC+TGG 0.270286 tig0023279:+42745 None:intergenic
GATATGATGGAGACTCTATT+TGG 0.275663 tig0023279:-45036 Msa1407260:CDS
AGGTTTGGGCGCTGAGTTAT+TGG 0.280816 tig0023279:-43534 Msa1407260:CDS
CTGAAACTTGCAGATATAAA+AGG 0.292541 tig0023279:-43051 Msa1407260:CDS
ACAGACATCTCTTTAGGTTT+AGG 0.293478 tig0023279:+44991 None:intergenic
CGATGCTAAATCTTTCAAAT+TGG 0.303383 tig0023279:-43082 Msa1407260:CDS
CTGGTAACAGACATCTCTTT+AGG 0.316531 tig0023279:+44985 None:intergenic
TAATCTCTTGAACAACAAAA+TGG 0.325799 tig0023279:+43004 None:intergenic
TTGAACATTAAACACTTATA+CGG 0.327866 tig0023279:-42265 Msa1407260:three_prime_UTR
TCACCGAAATCTCGATTATC+TGG 0.328111 tig0023279:-45618 Msa1407260:CDS
GGAAGCTTCTAGAATTCTAT+TGG 0.330438 tig0023279:+46037 None:intergenic
CACAGGGAATCCTGAAGGTT+TGG 0.344068 tig0023279:-43549 Msa1407260:intron
CTTGTTTCAGTTTCCGATGA+AGG 0.345738 tig0023279:+46080 None:intergenic
CGTTGAACTGAGAACTCGTT+TGG 0.346028 tig0023279:+42932 None:intergenic
TTGTTGTTCAAGAGATTATC+AGG 0.355589 tig0023279:-42999 Msa1407260:CDS
AACTGAGAACTCGTTTGGTT+TGG 0.359724 tig0023279:+42937 None:intergenic
AACTCAGCGCCCAAACCTTC+AGG 0.365367 tig0023279:+43539 None:intergenic
GGAGGTGGTGGAGGCGGTCG+AGG 0.366407 tig0023279:+45414 None:intergenic
ATCATTACGCGTTTCATCTC+CGG 0.369129 tig0023279:+45588 None:intergenic
CTTTGAGGCAATGCATTTGT+TGG 0.370940 tig0023279:+46524 None:intergenic
GGAGTGTTGTCTGGTGGAGG+AGG 0.379133 tig0023279:+46338 None:intergenic
GGAGGAGGCGGAGAGAATTC+CGG 0.379178 tig0023279:+46356 None:intergenic
CTGACGGTGACGGCAGGTTC+TGG 0.380075 tig0023279:+46246 None:intergenic
TTCAGCACAGTTCTCCTAGA+AGG 0.380503 tig0023279:-45521 Msa1407260:CDS
GGTGGAGGCGGTCGAGGAGG+AGG 0.390895 tig0023279:+45420 None:intergenic
CCACTGTTGAATTGGAGAAC+AGG 0.392265 tig0023279:-44948 Msa1407260:CDS
GTTGATGCTGTGTGTGTAAA+GGG 0.396050 tig0023279:+46695 None:intergenic
GAACCAGATAATCGAGATTT+CGG 0.396893 tig0023279:+45615 None:intergenic
TATTTCATATTCACAATACT+AGG 0.398761 tig0023279:+42390 None:intergenic
GGCGGAGGAGGTGGTGGAGG+CGG 0.400623 tig0023279:+45408 None:intergenic
GAGGAGGTGGTGGTCCGGTT+GGG 0.402114 tig0023279:+46282 None:intergenic
ATCCTATCGGTAACCGCAAC+CGG 0.403274 tig0023279:-45908 Msa1407260:CDS
GAAGTTACAGAATACTTTCA+TGG 0.405794 tig0023279:-42634 Msa1407260:CDS
GAATGAAGATGCATCAAATT+CGG 0.406335 tig0023279:+45471 None:intergenic
GGAGGAGTGTTGTCTGGTGG+AGG 0.406674 tig0023279:+46335 None:intergenic
CTATGTCATAAAGCTTGAAA+TGG 0.407918 tig0023279:-42806 Msa1407260:CDS
ACCGGTGGCGGAGGAGGTGG+TGG 0.408154 tig0023279:+45402 None:intergenic
CATGGAATGGATTCTGCATC+TGG 0.409278 tig0023279:-45318 Msa1407260:CDS
GGTGGCGGAGGAGGTGGTGG+AGG 0.412226 tig0023279:+45405 None:intergenic
TAAGAAATCCTTTCAAACCT+TGG 0.417240 tig0023279:-43327 Msa1407260:CDS
AAAGAAGGTGAAATGTTTCA+TGG 0.417701 tig0023279:+46484 None:intergenic
TTTGTAGGTTTCGTTGCAGT+TGG 0.418858 tig0023279:+46200 None:intergenic
GGGGCAACTAAATCAAATTT+GGG 0.419963 tig0023279:+42322 None:intergenic
ACACCAACCGTTGATAATTC+CGG 0.420093 tig0023279:-46396 Msa1407260:CDS
CGCGCCGGTAACTGTAACTC+CGG 0.422819 tig0023279:-45664 Msa1407260:CDS
AACTTCTTGAAGCTGTTCTC+AGG 0.426975 tig0023279:-43140 Msa1407260:CDS
GATGGTGACCTTTCAAAACT+TGG 0.429667 tig0023279:-43455 Msa1407260:CDS
ACAGGGAATCCTGAAGGTTT+GGG 0.432945 tig0023279:-43548 Msa1407260:intron
GGAAGATGATGAAATTGAAA+TGG 0.433467 tig0023279:-45265 Msa1407260:CDS
GGAGAGGGAGGAGTGTTGTC+TGG 0.433548 tig0023279:+46329 None:intergenic
GAACAGCTTCAAGAAGTTTG+AGG 0.433860 tig0023279:+43145 None:intergenic
AACCGGACCACCACCTCCTC+TGG 0.436359 tig0023279:-46279 Msa1407260:CDS
GGTGGTGGAGGCGGTCGAGG+AGG 0.437714 tig0023279:+45417 None:intergenic
TGCTTAAGAAATCTTTCTGC+AGG 0.437750 tig0023279:+43431 None:intergenic
TTGAGTTTGTTAAAGCAGTT+AGG 0.440363 tig0023279:+45930 None:intergenic
CTGGTTCATCGAGATCGTTC+AGG 0.444073 tig0023279:-42495 Msa1407260:CDS
GGTGAAGTTCTCTTCGAATA+CGG 0.446035 tig0023279:+45636 None:intergenic
AATCAAAGCTGATGAGATAA+GGG 0.446175 tig0023279:-42674 Msa1407260:CDS
AGAGGAGGTGGTGGTCCGGT+TGG 0.447247 tig0023279:+46281 None:intergenic
GTGTTGTCTGGTGGAGGAGG+AGG 0.448111 tig0023279:+46341 None:intergenic
GGTGGCGGCGAAGAGAATTT+CGG 0.448554 tig0023279:+45498 None:intergenic
GCAATTGCAACTTTCTTAGC+AGG 0.449938 tig0023279:+46176 None:intergenic
ACCACCGGTGGCGGAGGAGG+TGG 0.451606 tig0023279:+45399 None:intergenic
CACCAGAGGAGGTGGTGGTC+CGG 0.454974 tig0023279:+46277 None:intergenic
TTCAATCTTAACGAAAGCTA+TGG 0.455580 tig0023279:+42283 None:intergenic
CACTGTTGAATTGGAGAACA+GGG 0.460037 tig0023279:-44947 Msa1407260:CDS
AGGTTTGAAAGGATTTCTTA+AGG 0.461104 tig0023279:+43330 None:intergenic
TCCACCACCTCCTCCGCCAC+CGG 0.463271 tig0023279:-45403 Msa1407260:CDS
TTCACTCACCGGAGTTCCGT+TGG 0.463672 tig0023279:+45953 None:intergenic
CTTCTTCTTCCTCTGTTCCA+AGG 0.464804 tig0023279:-45368 Msa1407260:CDS
CAGGTTAAATGAGGATATGA+TGG 0.468516 tig0023279:-45049 Msa1407260:CDS
ATATGATGGAGACTCTATTT+GGG 0.475702 tig0023279:-45035 Msa1407260:CDS
ATCAAATTCGGAGCCGGTGG+CGG 0.476632 tig0023279:+45483 None:intergenic
TATGTCATAAAGCTTGAAAT+GGG 0.477397 tig0023279:-42805 Msa1407260:CDS
ATGGGCCTAATGATGGAAAA+GGG 0.477538 tig0023279:+42302 None:intergenic
GAATCAAAGCTGATGAGATA+AGG 0.477829 tig0023279:-42675 Msa1407260:CDS
CAAAGAAGTGGGAAGGATGC+AGG 0.477931 tig0023279:-42530 Msa1407260:CDS
GCACGATACCTGCTGAGAAC+AGG 0.478813 tig0023279:+42451 None:intergenic
TCACTCACCGGAGTTCCGTT+GGG 0.481318 tig0023279:+45954 None:intergenic
TATGGGCCTAATGATGGAAA+AGG 0.481898 tig0023279:+42301 None:intergenic
CTTGAAGCTGTTCTCAGGAC+AGG 0.482378 tig0023279:-43135 Msa1407260:CDS
TTCTGGTTGTTTGCCACCAG+AGG 0.486413 tig0023279:+46263 None:intergenic
AAAGGATTACAGGTTGTGGC+TGG 0.489164 tig0023279:-42892 Msa1407260:CDS
GAAATCCTTTCAAACCTTGG+AGG 0.489244 tig0023279:-43324 Msa1407260:intron
AAAGAAAGGATTACAGGTTG+TGG 0.492078 tig0023279:-42896 Msa1407260:CDS
CAAGGAATTATCAGTGGACT+CGG 0.492472 tig0023279:-45350 Msa1407260:CDS
CCGTGACTTCGACGCGAAAC+CGG 0.493969 tig0023279:+45696 None:intergenic
TTTGCCACCAGAGGAGGTGG+TGG 0.494925 tig0023279:+46272 None:intergenic
AGAAAATTTGAAGAAGAAGA+AGG 0.496385 tig0023279:+45999 None:intergenic
CTAAATTGAAAGCTCTGCAC+TGG 0.496969 tig0023279:-45230 Msa1407260:CDS
CTAACCACCGGTGGCGGAGG+AGG 0.497004 tig0023279:+45396 None:intergenic
GGTGACGTCTGCTCCGCCGC+CGG 0.497255 tig0023279:-46375 Msa1407260:CDS
GAAAGCTATGGGCCTAATGA+TGG 0.497272 tig0023279:+42295 None:intergenic
ATCTTCATTCAAACGACTCA+AGG 0.497504 tig0023279:-45458 Msa1407260:CDS
AAATTTAGTTTAATTCTTTG+AGG 0.499322 tig0023279:+46509 None:intergenic
CAGAACCTGCCGTCACCGTC+AGG 0.501489 tig0023279:-46245 Msa1407260:CDS
GATTTAGTTAGCGGCGGCAA+TGG 0.505426 tig0023279:+45867 None:intergenic
ACACACCTCCAAGGTTTGAA+AGG 0.508579 tig0023279:+43319 None:intergenic
AGATTTAGCATCGCCACGAT+TGG 0.510708 tig0023279:+43092 None:intergenic
TTCTCATCTCTCAGTTCAGA+AGG 0.510894 tig0023279:-46586 Msa1407260:five_prime_UTR
TTGTCTGGTGGAGGAGGAGG+CGG 0.511872 tig0023279:+46344 None:intergenic
AAAATTAGCTCTGTAAAGCA+TGG 0.511949 tig0023279:+43370 None:intergenic
GAGGGAGGAGTGTTGTCTGG+TGG 0.512080 tig0023279:+46332 None:intergenic
TCGATTATCTGGTTCCTCGC+CGG 0.512966 tig0023279:-45607 Msa1407260:CDS
GAAATTCTCTTCGCCGCCAC+CGG 0.513962 tig0023279:-45496 Msa1407260:CDS
ACCACCGGAGTTACAGTTAC+CGG 0.514163 tig0023279:+45660 None:intergenic
GGCGGAGAGAATTCCGGCGG+CGG 0.517028 tig0023279:+46362 None:intergenic
ATTCTCATTTGCAGATTCAC+CGG 0.517274 tig0023279:+42963 None:intergenic
ATTGGAAACTCTAGTGAAGA+TGG 0.518411 tig0023279:-43516 Msa1407260:CDS
CGAGTCCACTGATAATTCCT+TGG 0.519135 tig0023279:+45351 None:intergenic
TTGTTTGCCACCAGAGGAGG+TGG 0.519577 tig0023279:+46269 None:intergenic
CTAAAGAGATGTCTGTTACC+AGG 0.519907 tig0023279:-44984 Msa1407260:CDS
ACACTAACCACCGGTGGCGG+AGG 0.521665 tig0023279:+45393 None:intergenic
ATGGTAATGCAGGTTAAATG+AGG 0.524422 tig0023279:-45058 Msa1407260:intron
CTGTGCTGAAATTGTGTTGA+CGG 0.524634 tig0023279:+45534 None:intergenic
AATGGAATGTCAGGAGAGGG+AGG 0.526306 tig0023279:+46317 None:intergenic
GATGAGAAGAAGTAAGCCAT+TGG 0.530994 tig0023279:+46601 None:intergenic
GGCGGCAATGGATGCAACTC+AGG 0.531036 tig0023279:+45879 None:intergenic
TGGTTGTTTGCCACCAGAGG+AGG 0.533009 tig0023279:+46266 None:intergenic
CGTCGTTACCTGTTCTCAGC+AGG 0.533564 tig0023279:-42459 Msa1407260:CDS
AAGTTACAGAATACTTTCAT+GGG 0.534077 tig0023279:-42633 Msa1407260:CDS
GGCCGGTTGCGGTTACCGAT+AGG 0.534660 tig0023279:+45906 None:intergenic
GGGTGTGAAGAAAGCTTTGA+AGG 0.535103 tig0023279:-45286 Msa1407260:CDS
GGAGCATGTTGCTTTATTGA+CGG 0.535292 tig0023279:+45564 None:intergenic
TTCTTCTTCCTCGTCGTCTG+AGG 0.537905 tig0023279:-45808 Msa1407260:CDS
AATGGATGCAACTCAGGACT+CGG 0.538734 tig0023279:+45885 None:intergenic
GGATCAAGTCTGCAAAGAAG+TGG 0.538774 tig0023279:-42542 Msa1407260:CDS
ATTTCATATTCACAATACTA+GGG 0.538824 tig0023279:+42391 None:intergenic
TGTTGATGCTGTGTGTGTAA+AGG 0.541611 tig0023279:+46694 None:intergenic
TTTGAAGAAGAAGAAGGTGG+TGG 0.546772 tig0023279:+46005 None:intergenic
AAAGGCTGCAGGAATGGACT+CGG 0.547896 tig0023279:-42842 Msa1407260:CDS
CGTTGATTCTCATTCTCCAC+CGG 0.548316 tig0023279:-45838 Msa1407260:CDS
TTGAACCTGACGGTGACGGC+AGG 0.548831 tig0023279:+46240 None:intergenic
ATGGTGACCTTTCAAAACTT+GGG 0.551861 tig0023279:-43454 Msa1407260:CDS
TGTGGAGCCCAACGGAACTC+CGG 0.552235 tig0023279:-45961 Msa1407260:CDS
ACATTAAACACTTATACGGA+TGG 0.556638 tig0023279:-42261 Msa1407260:three_prime_UTR
TCTCTACATTGGAACCGTTG+TGG 0.558651 tig0023279:-45979 Msa1407260:CDS
GATACACTAACCACCGGTGG+CGG 0.560057 tig0023279:+45390 None:intergenic
GCAGATATAAAAGGTACAGA+TGG 0.562574 tig0023279:-43042 Msa1407260:CDS
CCGGTTTCGCGTCGAAGTCA+CGG 0.563427 tig0023279:-45696 Msa1407260:CDS
GGCGGCGGAGCAGACGTCAC+CGG 0.564483 tig0023279:+46377 None:intergenic
AGTTGCAATTGCAGTTTCAG+TGG 0.565542 tig0023279:-46165 Msa1407260:CDS
CTCTTCGAATACGGAACCAC+CGG 0.566007 tig0023279:+45645 None:intergenic
ATATATCTTCAATGTAAACA+AGG 0.567185 tig0023279:+42215 None:intergenic
ACCACCTCCTCCGCCACCGG+TGG 0.567206 tig0023279:-45400 Msa1407260:CDS
ACGACGAGAGATTTAGTTAG+CGG 0.567683 tig0023279:+45858 None:intergenic
GCATAGAATAAAGCCTTCAT+CGG 0.568759 tig0023279:-46093 Msa1407260:CDS
ATCAGGTCGGAAGGTACAGC+CGG 0.568859 tig0023279:-42982 Msa1407260:CDS
AAGCAGTTAGGTTCACTCAC+CGG 0.571077 tig0023279:+45942 None:intergenic
AACTTCTTTCACAAGGAACA+AGG 0.571632 tig0023279:+42651 None:intergenic
GAAGATGGCTCCAACAAAAG+AGG 0.572050 tig0023279:-43501 Msa1407260:CDS
TTAAACACTTATACGGATGG+TGG 0.573916 tig0023279:-42258 Msa1407260:three_prime_UTR
GGGGCTTGATAAAGTGAGAT+CGG 0.575021 tig0023279:-42785 Msa1407260:CDS
ACAGGAAACAGAATGAATGT+TGG 0.575422 tig0023279:-43117 Msa1407260:CDS
ACGCCGTTTCTCTAGTCTCA+CGG 0.576159 tig0023279:+45778 None:intergenic
CGGACCACCACCTCCTCTGG+TGG 0.576969 tig0023279:-46276 Msa1407260:CDS
ATGCAGGAAAGAACTGTGAC+TGG 0.577779 tig0023279:-42514 Msa1407260:CDS
TCTGCATCTGGAAACAGTGC+GGG 0.577794 tig0023279:-45306 Msa1407260:CDS
TCGGTCTATGAAGCATGGAA+TGG 0.579326 tig0023279:-45331 Msa1407260:CDS
CAACCGTGAGACTAGAGAAA+CGG 0.579509 tig0023279:-45781 Msa1407260:CDS
TCTTCAATGTAAACAAGGGT+CGG 0.581189 tig0023279:+42220 None:intergenic
AACGGCGTTTCATTCGCCGC+GGG 0.581574 tig0023279:-45763 Msa1407260:CDS
TATATCTCAGGCAGCAAGTG+AGG 0.582936 tig0023279:-43190 Msa1407260:intron
TAAATTGAAAGCTCTGCACT+GGG 0.583118 tig0023279:-45229 Msa1407260:CDS
TATGTAAAACCAGATATGCA+AGG 0.583153 tig0023279:-42754 Msa1407260:CDS
CTGATAATTCCTTGGAACAG+AGG 0.585491 tig0023279:+45359 None:intergenic
CTGTTCTCCAATTCAACAGT+GGG 0.585647 tig0023279:+44949 None:intergenic
TTCAGATCGTGCTACTGTGT+GGG 0.587285 tig0023279:-45190 Msa1407260:CDS
TTTAACAAACTCAATCCTAT+CGG 0.589527 tig0023279:-45921 Msa1407260:CDS
CAAGAGATTATCAGGTCGGA+AGG 0.590063 tig0023279:-42991 Msa1407260:CDS
GCTGGATTGAGTAGAGACTT+TGG 0.590535 tig0023279:-42874 Msa1407260:CDS
AGATGCATCAAATTCGGAGC+CGG 0.590772 tig0023279:+45477 None:intergenic
TCTTCATTCAAACGACTCAA+GGG 0.593445 tig0023279:-45457 Msa1407260:CDS
TGCATCAAATTCGGAGCCGG+TGG 0.594042 tig0023279:+45480 None:intergenic
CTTCAGATCGTGCTACTGTG+TGG 0.594661 tig0023279:-45191 Msa1407260:CDS
ATGAATGTTGGAACCAATCG+TGG 0.595034 tig0023279:-43105 Msa1407260:CDS
TGGACTCGGTCTATGAAGCA+TGG 0.595376 tig0023279:-45336 Msa1407260:CDS
TAAACACTTATACGGATGGT+GGG 0.595978 tig0023279:-42257 Msa1407260:three_prime_UTR
TCAATCTTAACGAAAGCTAT+GGG 0.598825 tig0023279:+42284 None:intergenic
TTGATGCTGTGTGTGTAAAG+GGG 0.600521 tig0023279:+46696 None:intergenic
GATCAAGTCTGCAAAGAAGT+GGG 0.602022 tig0023279:-42541 Msa1407260:CDS
GTTACAGTTACCGGCGCGGT+GGG 0.603183 tig0023279:+45669 None:intergenic
GTTTGCCACACACACCTCCA+AGG 0.609611 tig0023279:+43310 None:intergenic
TGTTCAAGAGATTATCAGGT+CGG 0.610036 tig0023279:-42995 Msa1407260:CDS
ATGTAAAACCAGATATGCAA+GGG 0.611906 tig0023279:-42753 Msa1407260:CDS
GCATTTGAACCTGACGGTGA+CGG 0.613546 tig0023279:+46236 None:intergenic
CTGTTCCAAGGAATTATCAG+TGG 0.623879 tig0023279:-45356 Msa1407260:CDS
CTTCATCGGAAACTGAAACA+AGG 0.624605 tig0023279:-46079 Msa1407260:CDS
AATTGTGTTGACGGCGACGG+CGG 0.627963 tig0023279:+45543 None:intergenic
AGTTCCGTTGGGCTCCACAA+CGG 0.632559 tig0023279:+45965 None:intergenic
AAGTCTGCAAAGAAGTGGGA+AGG 0.634745 tig0023279:-42537 Msa1407260:CDS
TCACCGGAATTATCAACGGT+TGG 0.635030 tig0023279:+46393 None:intergenic
TTGAAGAAGAAGAAGGTGGT+GGG 0.636727 tig0023279:+46006 None:intergenic
AAATTTGAAGAAGAAGAAGG+TGG 0.637682 tig0023279:+46002 None:intergenic
GCCGGTAACTGTAACTCCGG+TGG 0.638656 tig0023279:-45661 Msa1407260:CDS
AGTTACAGTTACCGGCGCGG+TGG 0.639027 tig0023279:+45668 None:intergenic
TGATGCTGTGTGTGTAAAGG+GGG 0.641057 tig0023279:+46697 None:intergenic
ATTCTGTAACTTCTTTCACA+AGG 0.641364 tig0023279:+42644 None:intergenic
GAAACTGAAACAAGGAAACT+CGG 0.642455 tig0023279:-46071 Msa1407260:CDS
GAGGAAGAAGAAGACACCGC+CGG 0.644407 tig0023279:+45819 None:intergenic
GATGGCTCCAACAAAAGAGG+AGG 0.646514 tig0023279:-43498 Msa1407260:CDS
ACGAGAGATTTAGTTAGCGG+CGG 0.646562 tig0023279:+45861 None:intergenic
CTTTCATGGGGATACAACAA+AGG 0.647792 tig0023279:-42620 Msa1407260:CDS
TGATTCTCATTCTCCACCGG+CGG 0.651839 tig0023279:-45835 Msa1407260:CDS
TGGGCCTAATGATGGAAAAG+GGG 0.653249 tig0023279:+42303 None:intergenic
GGAACCGTTGTGGAGCCCAA+CGG 0.653361 tig0023279:-45969 Msa1407260:CDS
GAAGAAGATACACTAACCAC+CGG 0.654172 tig0023279:+45384 None:intergenic
GATGACACAGGGAATCCTGA+AGG 0.656617 tig0023279:-43554 Msa1407260:intron
TATATCTTCAATGTAAACAA+GGG 0.656747 tig0023279:+42216 None:intergenic
TGAAGAAAGCTATTACACTC+CGG 0.658840 tig0023279:-45715 Msa1407260:CDS
ATACAAGAAGAAAGCTACAA+CGG 0.663363 tig0023279:+46118 None:intergenic
TGAAATTGTGTTGACGGCGA+CGG 0.665769 tig0023279:+45540 None:intergenic
TACGCGTTTCATCTCCGGCG+AGG 0.667773 tig0023279:+45593 None:intergenic
AGTTACAGAATACTTTCATG+GGG 0.668192 tig0023279:-42632 Msa1407260:CDS
GAAGAAGAAGACACCGCCGG+TGG 0.669517 tig0023279:+45822 None:intergenic
CCTGTTCTCCAATTCAACAG+TGG 0.670983 tig0023279:+44948 None:intergenic
GACGTCACCGGAATTATCAA+CGG 0.672938 tig0023279:+46389 None:intergenic
AAACGGCGTTTCATTCGCCG+CGG 0.674228 tig0023279:-45764 Msa1407260:CDS
AGAAGGTGGTGGGACCCGCG+TGG 0.685618 tig0023279:+46016 None:intergenic
GTTGTCTTCCTCAGACGACG+AGG 0.698929 tig0023279:+45800 None:intergenic
AATTCTAGAAGCTTCCACGC+GGG 0.701243 tig0023279:-46030 Msa1407260:CDS
ATGTCATAAAGCTTGAAATG+GGG 0.702798 tig0023279:-42804 Msa1407260:CDS
TTCTGCATCTGGAAACAGTG+CGG 0.703668 tig0023279:-45307 Msa1407260:CDS
GGAGGCGGAGAGAATTCCGG+CGG 0.707007 tig0023279:+46359 None:intergenic
TTGAGTGAAGACGATTCCCG+CGG 0.708032 tig0023279:+45747 None:intergenic
GAAGATACACTAACCACCGG+TGG 0.712386 tig0023279:+45387 None:intergenic
GAATTCTAGAAGCTTCCACG+CGG 0.730110 tig0023279:-46031 Msa1407260:CDS
ATTCTGGCATTTGAACCTGA+CGG 0.734248 tig0023279:+46230 None:intergenic
CGGAGTTACAGTTACCGGCG+CGG 0.743737 tig0023279:+45665 None:intergenic
AACGAGTTCTCAGTTCAACG+AGG 0.784871 tig0023279:-42929 Msa1407260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATATGATAAAAAAGA+AGG + tig0023279:42380-42399 None:intergenic 10.0%
!! ATAAAAGATAGAATATATAA+GGG + tig0023279:45027-45046 None:intergenic 10.0%
!! AATAAAAGATAGAATATATA+AGG + tig0023279:45028-45047 None:intergenic 10.0%
!! ATAAAACTAAAAAATTATGA+TGG - tig0023279:45373-45392 Msa1407260:CDS 10.0%
!!! TGTTTTTCTGATTTATTTAT+TGG + tig0023279:42214-42233 None:intergenic 15.0%
!!! AAATTTAGTTTAATTCTTTG+AGG + tig0023279:42340-42359 None:intergenic 15.0%
!!! AAAATATAGCTATTTTACTT+AGG - tig0023279:43943-43962 Msa1407260:intron 15.0%
!!! AAATATAGCTATTTTACTTA+GGG - tig0023279:43944-43963 Msa1407260:intron 15.0%
!!! TAAGTTTTCTGAATATTAAT+TGG - tig0023279:44013-44032 Msa1407260:intron 15.0%
!!! AAGTTTTCTGAATATTAATT+GGG - tig0023279:44014-44033 Msa1407260:intron 15.0%
!!! TAATTGGGATTTTTTTTTTA+TGG - tig0023279:44029-44048 Msa1407260:intron 15.0%
!! AAACATGTAAGAAAATTATT+TGG - tig0023279:44137-44156 Msa1407260:intron 15.0%
!!! TTTTTTTTTTTGGTAGAAAT+CGG - tig0023279:44664-44683 Msa1407260:intron 15.0%
!! ATGTTAATGATTATACTATT+GGG + tig0023279:44735-44754 None:intergenic 15.0%
!! TCAAGTTTAATAAAAATAAC+AGG + tig0023279:44840-44859 None:intergenic 15.0%
!! TTATAGATAAGAAAAATTAC+TGG + tig0023279:45224-45243 None:intergenic 15.0%
!!! GATTCTTAATATTTTTTCTT+TGG + tig0023279:46156-46175 None:intergenic 15.0%
!! ATAAAAACATTCTGTAATAT+GGG + tig0023279:46690-46709 None:intergenic 15.0%
!! AATAAAAACATTCTGTAATA+TGG + tig0023279:46691-46710 None:intergenic 15.0%
!! AAACAAAAAAGATAAACCAA+TGG - tig0023279:42229-42248 Msa1407260:three_prime_UTR 20.0%
!! ATAGTTTAATACTTTGATTC+TGG - tig0023279:43720-43739 Msa1407260:intron 20.0%
!!! GTTAATTATTGTGTTGTTTA+TGG - tig0023279:43769-43788 Msa1407260:intron 20.0%
!!! TGCAAATTTTGAAGTAAATT+GGG - tig0023279:44161-44180 Msa1407260:intron 20.0%
!!! TTTTCGCATTTGATATTATA+TGG + tig0023279:44288-44307 None:intergenic 20.0%
!! TATAATATCAAATGCGAAAA+TGG - tig0023279:44288-44307 Msa1407260:intron 20.0%
!! AACAAACTCACAATATTATA+GGG + tig0023279:44352-44371 None:intergenic 20.0%
!! AAATCATGCTCATAAAATAT+TGG - tig0023279:44604-44623 Msa1407260:intron 20.0%
!! GATTTCTACCAAAAAAAAAA+AGG + tig0023279:44665-44684 None:intergenic 20.0%
!!! TTTTTTTTTTGGTAGAAATC+GGG - tig0023279:44665-44684 Msa1407260:intron 20.0%
!! GATGTTAATGATTATACTAT+TGG + tig0023279:44736-44755 None:intergenic 20.0%
!! AAAGAATAATCATATGCTTA+AGG + tig0023279:45051-45070 None:intergenic 20.0%
!! TTAAAATTGTTAAGATAGGA+AGG + tig0023279:45112-45131 None:intergenic 20.0%
!! GCAATTAAAATTGTTAAGAT+AGG + tig0023279:45116-45135 None:intergenic 20.0%
!! TTATTATACAACATACAAGT+TGG + tig0023279:45143-45162 None:intergenic 20.0%
!! CAAGATATTAAAGATAACAA+CGG + tig0023279:45580-45599 None:intergenic 20.0%
!!! CAATCATAAAAATTCTGAAA+GGG + tig0023279:46262-46281 None:intergenic 20.0%
!! ACAATCATAAAAATTCTGAA+AGG + tig0023279:46263-46282 None:intergenic 20.0%
!! ATTTCATATTCACAATACTA+GGG + tig0023279:46458-46477 None:intergenic 20.0%
!! TATTTCATATTCACAATACT+AGG + tig0023279:46459-46478 None:intergenic 20.0%
!! TTGAACATTAAACACTTATA+CGG - tig0023279:46581-46600 Msa1407260:five_prime_UTR 20.0%
!! TATATCTTCAATGTAAACAA+GGG + tig0023279:46633-46652 None:intergenic 20.0%
!! ATATATCTTCAATGTAAACA+AGG + tig0023279:46634-46653 None:intergenic 20.0%
! AGAAAATTTGAAGAAGAAGA+AGG + tig0023279:42850-42869 None:intergenic 25.0%
!! TCTTCAAATTTTCTCTACAT+TGG - tig0023279:42856-42875 Msa1407260:CDS 25.0%
! TTTAACAAACTCAATCCTAT+CGG - tig0023279:42925-42944 Msa1407260:CDS 25.0%
!!! GAAATGAGCTTGATTTTAAT+TGG + tig0023279:43683-43702 None:intergenic 25.0%
!! TTAATACTTTGATTCTGGTT+TGG - tig0023279:43725-43744 Msa1407260:intron 25.0%
!!! TAATACTTTGATTCTGGTTT+GGG - tig0023279:43726-43745 Msa1407260:intron 25.0%
!!! CTGCAAATTTTGAAGTAAAT+TGG - tig0023279:44160-44179 Msa1407260:intron 25.0%
! AAGTAAATTGGGCATATATT+TGG - tig0023279:44172-44191 Msa1407260:intron 25.0%
!!! CCAAGTGTATTTTTGATTTA+CGG - tig0023279:44311-44330 Msa1407260:intron 25.0%
! CAACAAACTCACAATATTAT+AGG + tig0023279:44353-44372 None:intergenic 25.0%
! GGATATCTATATGAAAAACT+AGG - tig0023279:44470-44489 Msa1407260:intron 25.0%
!!! GGCTTATTCCTTTTTTTTTT+TGG - tig0023279:44654-44673 Msa1407260:intron 25.0%
!!! TTTTTTTTTGGTAGAAATCG+GGG - tig0023279:44666-44685 Msa1407260:intron 25.0%
! CAGTAGCAAAAAAAGTAAAA+TGG + tig0023279:44989-45008 None:intergenic 25.0%
!!! CAACTCTTTTAAAAGCTAAA+GGG + tig0023279:45453-45472 None:intergenic 25.0%
!!! TCAACTCTTTTAAAAGCTAA+AGG + tig0023279:45454-45473 None:intergenic 25.0%
! TGGTCAATTTAATTATCAAG+AGG + tig0023279:45624-45643 None:intergenic 25.0%
! TAATCTCTTGAACAACAAAA+TGG + tig0023279:45845-45864 None:intergenic 25.0%
! GTTTAAAAAGAAAGGATTAC+AGG - tig0023279:45944-45963 Msa1407260:CDS 25.0%
!!! AGACTTTGGTAATGTAAAAA+AGG - tig0023279:45986-46005 Msa1407260:CDS 25.0%
! TATGTCATAAAGCTTGAAAT+GGG - tig0023279:46041-46060 Msa1407260:CDS 25.0%
! AAGTTACAGAATACTTTCAT+GGG - tig0023279:46213-46232 Msa1407260:CDS 25.0%
!! TAGAGACTTCCTAAATATTT+TGG - tig0023279:46283-46302 Msa1407260:CDS 25.0%
! AGACTTGATCCAAAATATTT+AGG + tig0023279:46295-46314 None:intergenic 25.0%
AAAGAAGGTGAAATGTTTCA+TGG + tig0023279:42365-42384 None:intergenic 30.0%
TCATTGAAAAATGGAATGTC+AGG + tig0023279:42541-42560 None:intergenic 30.0%
ATACAAGAAGAAAGCTACAA+CGG + tig0023279:42731-42750 None:intergenic 30.0%
AAATTTGAAGAAGAAGAAGG+TGG + tig0023279:42847-42866 None:intergenic 30.0%
!! TTGAGTTTGTTAAAGCAGTT+AGG + tig0023279:42919-42938 None:intergenic 30.0%
GAATGAAGATGCATCAAATT+CGG + tig0023279:43378-43397 None:intergenic 30.0%
GGAAGATGATGAAATTGAAA+TGG - tig0023279:43581-43600 Msa1407260:intron 30.0%
! ATATGATGGAGACTCTATTT+GGG - tig0023279:43811-43830 Msa1407260:intron 30.0%
! CTATATTTTGTGACTTCTTG+GGG + tig0023279:43932-43951 None:intergenic 30.0%
! GCTATATTTTGTGACTTCTT+GGG + tig0023279:43933-43952 None:intergenic 30.0%
! AGCTATATTTTGTGACTTCT+TGG + tig0023279:43934-43953 None:intergenic 30.0%
CCGTAAATCAAAAATACACT+TGG + tig0023279:44314-44333 None:intergenic 30.0%
AGCTTTCATCAAAATTACAG+TGG - tig0023279:44387-44406 Msa1407260:intron 30.0%
GCTTTCATCAAAATTACAGT+GGG - tig0023279:44388-44407 Msa1407260:intron 30.0%
ATCATGTTGTGTCTATCATT+AGG - tig0023279:44434-44453 Msa1407260:intron 30.0%
! TATCATTAGGTTGTTGTTCT+AGG - tig0023279:44447-44466 Msa1407260:intron 30.0%
! ATCATTAGGTTGTTGTTCTA+GGG - tig0023279:44448-44467 Msa1407260:intron 30.0%
TAGGTTCTATGAGATTCAAA+GGG - tig0023279:44489-44508 Msa1407260:intron 30.0%
! TTGCTTGTCATAAACTCTTT+TGG - tig0023279:44631-44650 Msa1407260:intron 30.0%
! TGCTTGTCATAAACTCTTTT+GGG - tig0023279:44632-44651 Msa1407260:intron 30.0%
!! AACATATCATGGTGGATATT+TGG + tig0023279:44781-44800 None:intergenic 30.0%
ACTGATGAATGAACATATCA+TGG + tig0023279:44792-44811 None:intergenic 30.0%
TTGAACTACTACAGCTAAAA+AGG + tig0023279:44901-44920 None:intergenic 30.0%
TGTTAAGATAGGAAGGATAA+AGG + tig0023279:45105-45124 None:intergenic 30.0%
! ATACAACATACAAGTTGGAT+GGG + tig0023279:45138-45157 None:intergenic 30.0%
! TATACAACATACAAGTTGGA+TGG + tig0023279:45139-45158 None:intergenic 30.0%
TTTGATGCATGATATCAACT+AGG - tig0023279:45192-45211 Msa1407260:CDS 30.0%
TTGATGCATGATATCAACTA+GGG - tig0023279:45193-45212 Msa1407260:CDS 30.0%
ATGTTTGCAAAGTGAAATTC+TGG + tig0023279:45250-45269 None:intergenic 30.0%
!! TGTTTGTGGTTTTGCTTTTA+TGG - tig0023279:45270-45289 Msa1407260:CDS 30.0%
!! AAAATTAGCTCTGTAAAGCA+TGG + tig0023279:45479-45498 None:intergenic 30.0%
AGGTTTGAAAGGATTTCTTA+AGG + tig0023279:45519-45538 None:intergenic 30.0%
TAAGAAATCCTTTCAAACCT+TGG - tig0023279:45519-45538 Msa1407260:CDS 30.0%
GAGATATATTAACAGCTAGT+TGG + tig0023279:45644-45663 None:intergenic 30.0%
ACTAGCTGTTAATATATCTC+AGG - tig0023279:45644-45663 Msa1407260:CDS 30.0%
CAAGAAGTTTGAGGAATAAT+TGG + tig0023279:45695-45714 None:intergenic 30.0%
CGATGCTAAATCTTTCAAAT+TGG - tig0023279:45764-45783 Msa1407260:CDS 30.0%
! CTTTTATATCTGCAAGTTTC+AGG + tig0023279:45797-45816 None:intergenic 30.0%
CTGAAACTTGCAGATATAAA+AGG - tig0023279:45795-45814 Msa1407260:CDS 30.0%
! TTGTTGTTCAAGAGATTATC+AGG - tig0023279:45847-45866 Msa1407260:CDS 30.0%
GAGGATGAGTTTAAAAAGAA+AGG - tig0023279:45936-45955 Msa1407260:CDS 30.0%
CTATGTCATAAAGCTTGAAA+TGG - tig0023279:46040-46059 Msa1407260:CDS 30.0%
ATGTCATAAAGCTTGAAATG+GGG - tig0023279:46042-46061 Msa1407260:CDS 30.0%
TATGTAAAACCAGATATGCA+AGG - tig0023279:46092-46111 Msa1407260:CDS 30.0%
ATGTAAAACCAGATATGCAA+GGG - tig0023279:46093-46112 Msa1407260:CDS 30.0%
AATCAAAGCTGATGAGATAA+GGG - tig0023279:46172-46191 Msa1407260:CDS 30.0%
ATTCTGTAACTTCTTTCACA+AGG + tig0023279:46205-46224 None:intergenic 30.0%
GAAGTTACAGAATACTTTCA+TGG - tig0023279:46212-46231 Msa1407260:CDS 30.0%
AGTTACAGAATACTTTCATG+GGG - tig0023279:46214-46233 Msa1407260:CDS 30.0%
TCAATCTTAACGAAAGCTAT+GGG + tig0023279:46565-46584 None:intergenic 30.0%
TTCAATCTTAACGAAAGCTA+TGG + tig0023279:46566-46585 None:intergenic 30.0%
ACATTAAACACTTATACGGA+TGG - tig0023279:46585-46604 Msa1407260:five_prime_UTR 30.0%
!!! GAAGTTTCCTCCTTCTTTTT+TGG - tig0023279:42282-42301 Msa1407260:three_prime_UTR 35.0%
AAAAATGGAATGTCAGGAGA+GGG + tig0023279:42535-42554 None:intergenic 35.0%
GTTGGGAGTTCATTGAAAAA+TGG + tig0023279:42550-42569 None:intergenic 35.0%
!! TTTTTCAATGAACTCCCAAC+CGG - tig0023279:42550-42569 Msa1407260:CDS 35.0%
!! ACTTTCTTAGCAGGTTTTGT+AGG + tig0023279:42664-42683 None:intergenic 35.0%
GCATAGAATAAAGCCTTCAT+CGG - tig0023279:42753-42772 Msa1407260:CDS 35.0%
GAAACTGAAACAAGGAAACT+CGG - tig0023279:42775-42794 Msa1407260:CDS 35.0%
!! GGAAGCTTCTAGAATTCTAT+TGG + tig0023279:42812-42831 None:intergenic 35.0%
TGAAGAAAGCTATTACACTC+CGG - tig0023279:43131-43150 Msa1407260:CDS 35.0%
GAACCAGATAATCGAGATTT+CGG + tig0023279:43234-43253 None:intergenic 35.0%
ATCTTCATTCAAACGACTCA+AGG - tig0023279:43388-43407 Msa1407260:CDS 35.0%
TCTTCATTCAAACGACTCAA+GGG - tig0023279:43389-43408 Msa1407260:CDS 35.0%
TAAATTGAAAGCTCTGCACT+GGG - tig0023279:43617-43636 Msa1407260:intron 35.0%
!! TGTGTTGTTTATGGTAATGC+AGG - tig0023279:43778-43797 Msa1407260:intron 35.0%
! ATGGTAATGCAGGTTAAATG+AGG - tig0023279:43788-43807 Msa1407260:intron 35.0%
CAGGTTAAATGAGGATATGA+TGG - tig0023279:43797-43816 Msa1407260:intron 35.0%
! GATATGATGGAGACTCTATT+TGG - tig0023279:43810-43829 Msa1407260:intron 35.0%
! ACAGACATCTCTTTAGGTTT+AGG + tig0023279:43858-43877 None:intergenic 35.0%
AATTCAACAGTGGGAAAAAC+TGG + tig0023279:43891-43910 None:intergenic 35.0%
! AGTTTTTCCCACTGTTGAAT+TGG - tig0023279:43890-43909 Msa1407260:intron 35.0%
GATACAGTTTGGCGAAATTA+CGG + tig0023279:44417-44436 None:intergenic 35.0%
AGACACAACATGATACAGTT+TGG + tig0023279:44428-44447 None:intergenic 35.0%
! TCATTAGGTTGTTGTTCTAG+GGG - tig0023279:44449-44468 Msa1407260:intron 35.0%
CTAGGTTCTATGAGATTCAA+AGG - tig0023279:44488-44507 Msa1407260:intron 35.0%
TAAGAGAGAGATAGACACAA+AGG + tig0023279:44562-44581 None:intergenic 35.0%
! GCTTGTCATAAACTCTTTTG+GGG - tig0023279:44633-44652 Msa1407260:intron 35.0%
TCATTGTTCAATACTTCTGG+AGG + tig0023279:44758-44777 None:intergenic 35.0%
TGGTCATTGTTCAATACTTC+TGG + tig0023279:44761-44780 None:intergenic 35.0%
GATGAATGAACATATCATGG+TGG + tig0023279:44789-44808 None:intergenic 35.0%
TACAGCTAAAAAGGTAAGAG+GGG + tig0023279:44892-44911 None:intergenic 35.0%
CTACAGCTAAAAAGGTAAGA+GGG + tig0023279:44893-44912 None:intergenic 35.0%
ACTACAGCTAAAAAGGTAAG+AGG + tig0023279:44894-44913 None:intergenic 35.0%
TTTGCAAAGTGAAATTCTGG+TGG + tig0023279:45247-45266 None:intergenic 35.0%
CACTTTGCAAACATTGTTTG+TGG - tig0023279:45256-45275 Msa1407260:CDS 35.0%
!! TTTGCTTTTATGGATGACAC+AGG - tig0023279:45280-45299 Msa1407260:CDS 35.0%
!! TTGCTTTTATGGATGACACA+GGG - tig0023279:45281-45300 Msa1407260:CDS 35.0%
ATTGGAAACTCTAGTGAAGA+TGG - tig0023279:45330-45349 Msa1407260:CDS 35.0%
! TTTATCTCCTCCTCTTTTGT+TGG + tig0023279:45358-45377 None:intergenic 35.0%
ATGGTGACCTTTCAAAACTT+GGG - tig0023279:45392-45411 Msa1407260:CDS 35.0%
TGCTTAAGAAATCTTTCTGC+AGG + tig0023279:45418-45437 None:intergenic 35.0%
ACAGGAAACAGAATGAATGT+TGG - tig0023279:45729-45748 Msa1407260:CDS 35.0%
! GCAGATATAAAAGGTACAGA+TGG - tig0023279:45804-45823 Msa1407260:CDS 35.0%
TGTTCAAGAGATTATCAGGT+CGG - tig0023279:45851-45870 Msa1407260:CDS 35.0%
ATTCTCATTTGCAGATTCAC+CGG + tig0023279:45886-45905 None:intergenic 35.0%
AAAGAAAGGATTACAGGTTG+TGG - tig0023279:45950-45969 Msa1407260:CDS 35.0%
GAATCAAAGCTGATGAGATA+AGG - tig0023279:46171-46190 Msa1407260:CDS 35.0%
AACTTCTTTCACAAGGAACA+AGG + tig0023279:46198-46217 None:intergenic 35.0%
GGGGCAACTAAATCAAATTT+GGG + tig0023279:46527-46546 None:intergenic 35.0%
AGGGGCAACTAAATCAAATT+TGG + tig0023279:46528-46547 None:intergenic 35.0%
TTAAACACTTATACGGATGG+TGG - tig0023279:46588-46607 Msa1407260:five_prime_UTR 35.0%
TAAACACTTATACGGATGGT+GGG - tig0023279:46589-46608 Msa1407260:five_prime_UTR 35.0%
TCTTCAATGTAAACAAGGGT+CGG + tig0023279:46629-46648 None:intergenic 35.0%
TTGATGCTGTGTGTGTAAAG+GGG + tig0023279:42153-42172 None:intergenic 40.0%
GTTGATGCTGTGTGTGTAAA+GGG + tig0023279:42154-42173 None:intergenic 40.0%
TGTTGATGCTGTGTGTGTAA+AGG + tig0023279:42155-42174 None:intergenic 40.0%
GATGAGAAGAAGTAAGCCAT+TGG + tig0023279:42248-42267 None:intergenic 40.0%
TTCTCATCTCTCAGTTCAGA+AGG - tig0023279:42260-42279 Msa1407260:three_prime_UTR 40.0%
GTACCAGAGTCCAAAAAAGA+AGG + tig0023279:42295-42314 None:intergenic 40.0%
!! CTTTGAGGCAATGCATTTGT+TGG + tig0023279:42325-42344 None:intergenic 40.0%
!! ACACCAACCGTTGATAATTC+CGG - tig0023279:42450-42469 Msa1407260:CDS 40.0%
GAAAAATGGAATGTCAGGAG+AGG + tig0023279:42536-42555 None:intergenic 40.0%
ATTCTGGCATTTGAACCTGA+CGG + tig0023279:42619-42638 None:intergenic 40.0%
TGCAGTTGGATTTGCAATTC+TGG + tig0023279:42635-42654 None:intergenic 40.0%
TTTGTAGGTTTCGTTGCAGT+TGG + tig0023279:42649-42668 None:intergenic 40.0%
GCAATTGCAACTTTCTTAGC+AGG + tig0023279:42673-42692 None:intergenic 40.0%
AGTTGCAATTGCAGTTTCAG+TGG - tig0023279:42681-42700 Msa1407260:CDS 40.0%
CTTGTTTCAGTTTCCGATGA+AGG + tig0023279:42769-42788 None:intergenic 40.0%
CTTCATCGGAAACTGAAACA+AGG - tig0023279:42767-42786 Msa1407260:CDS 40.0%
TTGAAGAAGAAGAAGGTGGT+GGG + tig0023279:42843-42862 None:intergenic 40.0%
TTTGAAGAAGAAGAAGGTGG+TGG + tig0023279:42844-42863 None:intergenic 40.0%
ACGACGAGAGATTTAGTTAG+CGG + tig0023279:42991-43010 None:intergenic 40.0%
GGTGAAGTTCTCTTCGAATA+CGG + tig0023279:43213-43232 None:intergenic 40.0%
TCACCGAAATCTCGATTATC+TGG - tig0023279:43228-43247 Msa1407260:intron 40.0%
ATCATTACGCGTTTCATCTC+CGG + tig0023279:43261-43280 None:intergenic 40.0%
!! GGAGCATGTTGCTTTATTGA+CGG + tig0023279:43285-43304 None:intergenic 40.0%
CTGTGCTGAAATTGTGTTGA+CGG + tig0023279:43315-43334 None:intergenic 40.0%
GAAGAAGATACACTAACCAC+CGG + tig0023279:43465-43484 None:intergenic 40.0%
CTGATAATTCCTTGGAACAG+AGG + tig0023279:43490-43509 None:intergenic 40.0%
CTGTTCCAAGGAATTATCAG+TGG - tig0023279:43490-43509 Msa1407260:CDS 40.0%
! CAAGGAATTATCAGTGGACT+CGG - tig0023279:43496-43515 Msa1407260:CDS 40.0%
CAGTGCAGAGCTTTCAATTT+AGG + tig0023279:43618-43637 None:intergenic 40.0%
CTAAATTGAAAGCTCTGCAC+TGG - tig0023279:43616-43635 Msa1407260:intron 40.0%
CTGGTAACAGACATCTCTTT+AGG + tig0023279:43864-43883 None:intergenic 40.0%
CTAAAGAGATGTCTGTTACC+AGG - tig0023279:43862-43881 Msa1407260:intron 40.0%
CTGTTCTCCAATTCAACAGT+GGG + tig0023279:43900-43919 None:intergenic 40.0%
CACTGTTGAATTGGAGAACA+GGG - tig0023279:43899-43918 Msa1407260:intron 40.0%
!! GTGTCTGAAGCTCTTTTAGA+TGG - tig0023279:43990-44009 Msa1407260:intron 40.0%
AGATTCAAAGGGTAGCACTT+GGG - tig0023279:44500-44519 Msa1407260:intron 40.0%
AAAGGTAGCAATGGCACAAA+TGG + tig0023279:44544-44563 None:intergenic 40.0%
GATAGACACAAAGGTAGCAA+TGG + tig0023279:44553-44572 None:intergenic 40.0%
ACTCAAGTCTCGCATTACAA+AGG + tig0023279:44698-44717 None:intergenic 40.0%
ACAGCTAAAAAGGTAAGAGG+GGG + tig0023279:44891-44910 None:intergenic 40.0%
TATAAGGGTTAAGCTGCTGA+AGG + tig0023279:45012-45031 None:intergenic 40.0%
GATGGTGACCTTTCAAAACT+TGG - tig0023279:45391-45410 Msa1407260:CDS 40.0%
GAAATCCTTTCAAACCTTGG+AGG - tig0023279:45522-45541 Msa1407260:CDS 40.0%
GAACAGCTTCAAGAAGTTTG+AGG + tig0023279:45704-45723 None:intergenic 40.0%
AACTTCTTGAAGCTGTTCTC+AGG - tig0023279:45706-45725 Msa1407260:CDS 40.0%
ATGAATGTTGGAACCAATCG+TGG - tig0023279:45741-45760 Msa1407260:CDS 40.0%
AACTGAGAACTCGTTTGGTT+TGG + tig0023279:45912-45931 None:intergenic 40.0%
GGTAATGTAAAAAAGGCTGC+AGG - tig0023279:45993-46012 Msa1407260:CDS 40.0%
TGTAAAAAAGGCTGCAGGAA+TGG - tig0023279:45998-46017 Msa1407260:CDS 40.0%
AAGAAGTTCCCTTGCATATC+TGG + tig0023279:46104-46123 None:intergenic 40.0%
CTTTCATGGGGATACAACAA+AGG - tig0023279:46226-46245 Msa1407260:CDS 40.0%
GATCAAGTCTGCAAAGAAGT+GGG - tig0023279:46305-46324 Msa1407260:CDS 40.0%
! ATGGGCCTAATGATGGAAAA+GGG + tig0023279:46547-46566 None:intergenic 40.0%
! TATGGGCCTAATGATGGAAA+AGG + tig0023279:46548-46567 None:intergenic 40.0%
TGATGCTGTGTGTGTAAAGG+GGG + tig0023279:42152-42171 None:intergenic 45.0%
CCAGAGTCCAAAAAAGAAGG+AGG + tig0023279:42292-42311 None:intergenic 45.0%
!!! CCTCCTTCTTTTTTGGACTC+TGG - tig0023279:42289-42308 Msa1407260:three_prime_UTR 45.0%
TCACCGGAATTATCAACGGT+TGG + tig0023279:42456-42475 None:intergenic 45.0%
GACGTCACCGGAATTATCAA+CGG + tig0023279:42460-42479 None:intergenic 45.0%
! GAATTCTAGAAGCTTCCACG+CGG - tig0023279:42815-42834 Msa1407260:CDS 45.0%
! AATTCTAGAAGCTTCCACGC+GGG - tig0023279:42816-42835 Msa1407260:CDS 45.0%
TCTCTACATTGGAACCGTTG+TGG - tig0023279:42867-42886 Msa1407260:CDS 45.0%
AAGCAGTTAGGTTCACTCAC+CGG + tig0023279:42907-42926 None:intergenic 45.0%
AATGGATGCAACTCAGGACT+CGG + tig0023279:42964-42983 None:intergenic 45.0%
ACGAGAGATTTAGTTAGCGG+CGG + tig0023279:42988-43007 None:intergenic 45.0%
!! CGTTGATTCTCATTCTCCAC+CGG - tig0023279:43008-43027 Msa1407260:CDS 45.0%
CAACCGTGAGACTAGAGAAA+CGG - tig0023279:43065-43084 Msa1407260:CDS 45.0%
! TGAAATTGTGTTGACGGCGA+CGG + tig0023279:43309-43328 None:intergenic 45.0%
TTCAGCACAGTTCTCCTAGA+AGG - tig0023279:43325-43344 Msa1407260:CDS 45.0%
GAAGAGAATTTCGGCCTTCT+AGG + tig0023279:43342-43361 None:intergenic 45.0%
AGATGCATCAAATTCGGAGC+CGG + tig0023279:43372-43391 None:intergenic 45.0%
CTTCTTCTTCCTCTGTTCCA+AGG - tig0023279:43478-43497 Msa1407260:CDS 45.0%
CGAGTCCACTGATAATTCCT+TGG + tig0023279:43498-43517 None:intergenic 45.0%
TCGGTCTATGAAGCATGGAA+TGG - tig0023279:43515-43534 Msa1407260:CDS 45.0%
! CATGGAATGGATTCTGCATC+TGG - tig0023279:43528-43547 Msa1407260:CDS 45.0%
TTCTGCATCTGGAAACAGTG+CGG - tig0023279:43539-43558 Msa1407260:CDS 45.0%
! GGGTGTGAAGAAAGCTTTGA+AGG - tig0023279:43560-43579 Msa1407260:intron 45.0%
! TTCAGATCGTGCTACTGTGT+GGG - tig0023279:43656-43675 Msa1407260:intron 45.0%
! AGTGGGAAAAACTGGTTTCC+TGG + tig0023279:43883-43902 None:intergenic 45.0%
CCTGTTCTCCAATTCAACAG+TGG + tig0023279:43901-43920 None:intergenic 45.0%
CCACTGTTGAATTGGAGAAC+AGG - tig0023279:43898-43917 Msa1407260:intron 45.0%
GAGATTCAAAGGGTAGCACT+TGG - tig0023279:44499-44518 Msa1407260:intron 45.0%
CAAATGGCACCAAAAGCCAA+TGG + tig0023279:44528-44547 None:intergenic 45.0%
TAGTTCAAGCTTCCCCTGAA+AGG - tig0023279:44913-44932 Msa1407260:CDS 45.0%
TTACGGATGCACTCCTTTCA+GGG + tig0023279:44929-44948 None:intergenic 45.0%
GTGGTCATGACTCAGACTTA+CGG + tig0023279:44946-44965 None:intergenic 45.0%
!! AGGATAAAGGAGCACTGACA+CGG + tig0023279:45092-45111 None:intergenic 45.0%
ACAGGGAATCCTGAAGGTTT+GGG - tig0023279:45298-45317 Msa1407260:CDS 45.0%
GAAGATGGCTCCAACAAAAG+AGG - tig0023279:45345-45364 Msa1407260:CDS 45.0%
ACACACCTCCAAGGTTTGAA+AGG + tig0023279:45530-45549 None:intergenic 45.0%
TATATCTCAGGCAGCAAGTG+AGG - tig0023279:45656-45675 Msa1407260:CDS 45.0%
AGATTTAGCATCGCCACGAT+TGG + tig0023279:45757-45776 None:intergenic 45.0%
CAAGAGATTATCAGGTCGGA+AGG - tig0023279:45855-45874 Msa1407260:CDS 45.0%
CGTTGAACTGAGAACTCGTT+TGG + tig0023279:45917-45936 None:intergenic 45.0%
AACGAGTTCTCAGTTCAACG+AGG - tig0023279:45917-45936 Msa1407260:CDS 45.0%
AAAGGATTACAGGTTGTGGC+TGG - tig0023279:45954-45973 Msa1407260:CDS 45.0%
GCTGGATTGAGTAGAGACTT+TGG - tig0023279:45972-45991 Msa1407260:CDS 45.0%
GGGGCTTGATAAAGTGAGAT+CGG - tig0023279:46061-46080 Msa1407260:CDS 45.0%
GGATCAAGTCTGCAAAGAAG+TGG - tig0023279:46304-46323 Msa1407260:CDS 45.0%
AAGTCTGCAAAGAAGTGGGA+AGG - tig0023279:46309-46328 Msa1407260:CDS 45.0%
ATGCAGGAAAGAACTGTGAC+TGG - tig0023279:46332-46351 Msa1407260:CDS 45.0%
! GTTGCCCCTTTTCCATCATT+AGG - tig0023279:46539-46558 Msa1407260:five_prime_UTR 45.0%
! TGGGCCTAATGATGGAAAAG+GGG + tig0023279:46546-46565 None:intergenic 45.0%
GAAAGCTATGGGCCTAATGA+TGG + tig0023279:46554-46573 None:intergenic 45.0%
AATGGAATGTCAGGAGAGGG+AGG + tig0023279:42532-42551 None:intergenic 50.0%
! TTCTGGTTGTTTGCCACCAG+AGG + tig0023279:42586-42605 None:intergenic 50.0%
GCATTTGAACCTGACGGTGA+CGG + tig0023279:42613-42632 None:intergenic 50.0%
ATCCTATCGGTAACCGCAAC+CGG - tig0023279:42938-42957 Msa1407260:CDS 50.0%
GATTTAGTTAGCGGCGGCAA+TGG + tig0023279:42982-43001 None:intergenic 50.0%
TGATTCTCATTCTCCACCGG+CGG - tig0023279:43011-43030 Msa1407260:CDS 50.0%
TTCTTCTTCCTCGTCGTCTG+AGG - tig0023279:43038-43057 Msa1407260:CDS 50.0%
ACGCCGTTTCTCTAGTCTCA+CGG + tig0023279:43071-43090 None:intergenic 50.0%
TTGAGTGAAGACGATTCCCG+CGG + tig0023279:43102-43121 None:intergenic 50.0%
ACCACCGGAGTTACAGTTAC+CGG + tig0023279:43189-43208 None:intergenic 50.0%
CTCTTCGAATACGGAACCAC+CGG + tig0023279:43204-43223 None:intergenic 50.0%
! TCGATTATCTGGTTCCTCGC+CGG - tig0023279:43239-43258 Msa1407260:intron 50.0%
GAAGATACACTAACCACCGG+TGG + tig0023279:43462-43481 None:intergenic 50.0%
! TGGACTCGGTCTATGAAGCA+TGG - tig0023279:43510-43529 Msa1407260:CDS 50.0%
TCTGCATCTGGAAACAGTGC+GGG - tig0023279:43540-43559 Msa1407260:CDS 50.0%
! CTTCAGATCGTGCTACTGTG+TGG - tig0023279:43655-43674 Msa1407260:intron 50.0%
!!! ACTTGGGTGCCATTGGCTTT+TGG - tig0023279:44516-44535 Msa1407260:intron 50.0%
GCTAAAAAGGTAAGAGGGGG+TGG + tig0023279:44888-44907 None:intergenic 50.0%
TACGGATGCACTCCTTTCAG+GGG + tig0023279:44928-44947 None:intergenic 50.0%
CTTACGGATGCACTCCTTTC+AGG + tig0023279:44930-44949 None:intergenic 50.0%
CTGTCTTGATCACGTGCTAG+TGG + tig0023279:44965-44984 None:intergenic 50.0%
GATGACACAGGGAATCCTGA+AGG - tig0023279:45292-45311 Msa1407260:CDS 50.0%
CACAGGGAATCCTGAAGGTT+TGG - tig0023279:45297-45316 Msa1407260:CDS 50.0%
!! AGGTTTGGGCGCTGAGTTAT+TGG - tig0023279:45312-45331 Msa1407260:CDS 50.0%
GATGGCTCCAACAAAAGAGG+AGG - tig0023279:45348-45367 Msa1407260:CDS 50.0%
!!! CTGCAGGCCCAAGTTTTGAA+AGG + tig0023279:45402-45421 None:intergenic 50.0%
! TCAAACCTTGGAGGTGTGTG+TGG - tig0023279:45531-45550 Msa1407260:CDS 50.0%
CTTGAAGCTGTTCTCAGGAC+AGG - tig0023279:45711-45730 Msa1407260:CDS 50.0%
! AAAGGCTGCAGGAATGGACT+CGG - tig0023279:46004-46023 Msa1407260:CDS 50.0%
CAAAGAAGTGGGAAGGATGC+AGG - tig0023279:46316-46335 Msa1407260:CDS 50.0%
CTGGTTCATCGAGATCGTTC+AGG - tig0023279:46351-46370 Msa1407260:CDS 50.0%
TTGTTTGCCACCAGAGGAGG+TGG + tig0023279:42580-42599 None:intergenic 55.0%
TGGTTGTTTGCCACCAGAGG+AGG + tig0023279:42583-42602 None:intergenic 55.0%
AGTTCCGTTGGGCTCCACAA+CGG + tig0023279:42884-42903 None:intergenic 55.0%
TCACTCACCGGAGTTCCGTT+GGG + tig0023279:42895-42914 None:intergenic 55.0%
TTCACTCACCGGAGTTCCGT+TGG + tig0023279:42896-42915 None:intergenic 55.0%
GAGGAAGAAGAAGACACCGC+CGG + tig0023279:43030-43049 None:intergenic 55.0%
GTTGTCTTCCTCAGACGACG+AGG + tig0023279:43049-43068 None:intergenic 55.0%
AAACGGCGTTTCATTCGCCG+CGG - tig0023279:43082-43101 Msa1407260:CDS 55.0%
! AATTGTGTTGACGGCGACGG+CGG + tig0023279:43306-43325 None:intergenic 55.0%
! GGTGGCGGCGAAGAGAATTT+CGG + tig0023279:43351-43370 None:intergenic 55.0%
GAAATTCTCTTCGCCGCCAC+CGG - tig0023279:43350-43369 Msa1407260:CDS 55.0%
ATCAAATTCGGAGCCGGTGG+CGG + tig0023279:43366-43385 None:intergenic 55.0%
TGCATCAAATTCGGAGCCGG+TGG + tig0023279:43369-43388 None:intergenic 55.0%
GATACACTAACCACCGGTGG+CGG + tig0023279:43459-43478 None:intergenic 55.0%
AACTCAGCGCCCAAACCTTC+AGG + tig0023279:45310-45329 None:intergenic 55.0%
GTTTGCCACACACACCTCCA+AGG + tig0023279:45539-45558 None:intergenic 55.0%
! ATCAGGTCGGAAGGTACAGC+CGG - tig0023279:45864-45883 Msa1407260:CDS 55.0%
CGTCGTTACCTGTTCTCAGC+AGG - tig0023279:46387-46406 Msa1407260:CDS 55.0%
GCACGATACCTGCTGAGAAC+AGG + tig0023279:46398-46417 None:intergenic 55.0%
GGAGGAGGCGGAGAGAATTC+CGG + tig0023279:42493-42512 None:intergenic 60.0%
TTGTCTGGTGGAGGAGGAGG+CGG + tig0023279:42505-42524 None:intergenic 60.0%
GTGTTGTCTGGTGGAGGAGG+AGG + tig0023279:42508-42527 None:intergenic 60.0%
!! GGAGTGTTGTCTGGTGGAGG+AGG + tig0023279:42511-42530 None:intergenic 60.0%
!! GGAGGAGTGTTGTCTGGTGG+AGG + tig0023279:42514-42533 None:intergenic 60.0%
!! GAGGGAGGAGTGTTGTCTGG+TGG + tig0023279:42517-42536 None:intergenic 60.0%
!! GGAGAGGGAGGAGTGTTGTC+TGG + tig0023279:42520-42539 None:intergenic 60.0%
TTTGCCACCAGAGGAGGTGG+TGG + tig0023279:42577-42596 None:intergenic 60.0%
! TTGAACCTGACGGTGACGGC+AGG + tig0023279:42609-42628 None:intergenic 60.0%
GGAACCGTTGTGGAGCCCAA+CGG - tig0023279:42877-42896 Msa1407260:CDS 60.0%
TGTGGAGCCCAACGGAACTC+CGG - tig0023279:42885-42904 Msa1407260:CDS 60.0%
GATGCAACTCAGGACTCGGC+CGG + tig0023279:42960-42979 None:intergenic 60.0%
GGCGGCAATGGATGCAACTC+AGG + tig0023279:42970-42989 None:intergenic 60.0%
GAAGAAGAAGACACCGCCGG+TGG + tig0023279:43027-43046 None:intergenic 60.0%
AACGGCGTTTCATTCGCCGC+GGG - tig0023279:43083-43102 Msa1407260:CDS 60.0%
CCGTGACTTCGACGCGAAAC+CGG + tig0023279:43153-43172 None:intergenic 60.0%
CCGGTTTCGCGTCGAAGTCA+CGG - tig0023279:43150-43169 Msa1407260:CDS 60.0%
GTTACAGTTACCGGCGCGGT+GGG + tig0023279:43180-43199 None:intergenic 60.0%
AGTTACAGTTACCGGCGCGG+TGG + tig0023279:43181-43200 None:intergenic 60.0%
CGGAGTTACAGTTACCGGCG+CGG + tig0023279:43184-43203 None:intergenic 60.0%
! CGCGCCGGTAACTGTAACTC+CGG - tig0023279:43182-43201 Msa1407260:CDS 60.0%
GCCGGTAACTGTAACTCCGG+TGG - tig0023279:43185-43204 Msa1407260:intron 60.0%
TACGCGTTTCATCTCCGGCG+AGG + tig0023279:43256-43275 None:intergenic 60.0%
! GGGTAGCACTTGGGTGCCAT+TGG - tig0023279:44509-44528 Msa1407260:intron 60.0%
GGAGGCGGAGAGAATTCCGG+CGG + tig0023279:42490-42509 None:intergenic 65.0%
! GAGGAGGTGGTGGTCCGGTT+GGG + tig0023279:42567-42586 None:intergenic 65.0%
! AGAGGAGGTGGTGGTCCGGT+TGG + tig0023279:42568-42587 None:intergenic 65.0%
AACCGGACCACCACCTCCTC+TGG - tig0023279:42567-42586 Msa1407260:CDS 65.0%
! CACCAGAGGAGGTGGTGGTC+CGG + tig0023279:42572-42591 None:intergenic 65.0%
! CTGACGGTGACGGCAGGTTC+TGG + tig0023279:42603-42622 None:intergenic 65.0%
CAGAACCTGCCGTCACCGTC+AGG - tig0023279:42601-42620 Msa1407260:CDS 65.0%
GGCCGGTTGCGGTTACCGAT+AGG + tig0023279:42943-42962 None:intergenic 65.0%
ACTCAGGACTCGGCCGGTTG+CGG + tig0023279:42954-42973 None:intergenic 65.0%
! ACACTAACCACCGGTGGCGG+AGG + tig0023279:43456-43475 None:intergenic 65.0%
GGCGGAGAGAATTCCGGCGG+CGG + tig0023279:42487-42506 None:intergenic 70.0%
CGGACCACCACCTCCTCTGG+TGG - tig0023279:42570-42589 Msa1407260:CDS 70.0%
!! AGAAGGTGGTGGGACCCGCG+TGG + tig0023279:42833-42852 None:intergenic 70.0%
TCACGGAAGTCCCACCGCGC+CGG - tig0023279:43167-43186 Msa1407260:CDS 70.0%
TCCACCACCTCCTCCGCCAC+CGG - tig0023279:43443-43462 Msa1407260:CDS 70.0%
!! CTAACCACCGGTGGCGGAGG+AGG + tig0023279:43453-43472 None:intergenic 70.0%
GGCGGCGGAGCAGACGTCAC+CGG + tig0023279:42472-42491 None:intergenic 75.0%
GGTGACGTCTGCTCCGCCGC+CGG - tig0023279:42471-42490 Msa1407260:CDS 75.0%
GGTGGAGGCGGTCGAGGAGG+AGG + tig0023279:43429-43448 None:intergenic 75.0%
!! GGTGGTGGAGGCGGTCGAGG+AGG + tig0023279:43432-43451 None:intergenic 75.0%
!! GGAGGTGGTGGAGGCGGTCG+AGG + tig0023279:43435-43454 None:intergenic 75.0%
!! GGCGGAGGAGGTGGTGGAGG+CGG + tig0023279:43441-43460 None:intergenic 75.0%
!! GGTGGCGGAGGAGGTGGTGG+AGG + tig0023279:43444-43463 None:intergenic 75.0%
!! ACCGGTGGCGGAGGAGGTGG+TGG + tig0023279:43447-43466 None:intergenic 75.0%
ACCACCTCCTCCGCCACCGG+TGG - tig0023279:43446-43465 Msa1407260:CDS 75.0%
!! ACCACCGGTGGCGGAGGAGG+TGG + tig0023279:43450-43469 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0023279 gene 42139 46729 42139 ID=Msa1407260;Name=Msa1407260
tig0023279 mRNA 42139 46729 42139 ID=Msa1407260-mRNA-1;Parent=Msa1407260;Name=Msa1407260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=225|1|1|1|1|1|4|269|862
tig0023279 exon 42139 43202 42139 ID=Msa1407260-mRNA-1:exon:25012;Parent=Msa1407260-mRNA-1
tig0023279 exon 43325 43566 43325 ID=Msa1407260-mRNA-1:exon:25011;Parent=Msa1407260-mRNA-1
tig0023279 exon 44857 45068 44857 ID=Msa1407260-mRNA-1:exon:25010;Parent=Msa1407260-mRNA-1
tig0023279 exon 45165 46729 45165 ID=Msa1407260-mRNA-1:exon:25009;Parent=Msa1407260-mRNA-1
tig0023279 five_prime_UTR 46505 46729 46505 ID=Msa1407260-mRNA-1:five_prime_utr;Parent=Msa1407260-mRNA-1
tig0023279 CDS 45165 46504 45165 ID=Msa1407260-mRNA-1:cds;Parent=Msa1407260-mRNA-1
tig0023279 CDS 44857 45068 44857 ID=Msa1407260-mRNA-1:cds;Parent=Msa1407260-mRNA-1
tig0023279 CDS 43325 43566 43325 ID=Msa1407260-mRNA-1:cds;Parent=Msa1407260-mRNA-1
tig0023279 CDS 42408 43202 42408 ID=Msa1407260-mRNA-1:cds;Parent=Msa1407260-mRNA-1
tig0023279 three_prime_UTR 42139 42407 42139 ID=Msa1407260-mRNA-1:three_prime_utr;Parent=Msa1407260-mRNA-1
Gene Sequence

>Msa1407260

ATGAAACATTTCACCTTCTTTTTTATCATATTATTATCATCATTCTCATTCTCTCTAACAACAACACTCGCTGATAGAAGAATCTTACACCAACCGTTGATAATTCCGGTGACGTCTGCTCCGCCGCCGGAATTCTCTCCGCCTCCTCCTCCACCAGACAACACTCCTCCCTCTCCTGACATTCCATTTTTCAATGAACTCCCAACCGGACCACCACCTCCTCTGGTGGCAAACAACCAGAACCTGCCGTCACCGTCAGGTTCAAATGCCAGAATTGCAAATCCAACTGCAACGAAACCTACAAAACCTGCTAAGAAAGTTGCAATTGCAGTTTCAGTGGCATTTTCGTTATTTGTTATATTCTCCGTTGTAGCTTTCTTCTTGTATAAGCATAGAATAAAGCCTTCATCGGAAACTGAAACAAGGAAACTCGGCGCTGAGAATTCCAATAGAATTCTAGAAGCTTCCACGCGGGTCCCACCACCTTCTTCTTCTTCAAATTTTCTCTACATTGGAACCGTTGTGGAGCCCAACGGAACTCCGGTGAGTGAACCTAACTGCTTTAACAAACTCAATCCTATCGGTAACCGCAACCGGCCGAGTCCTGAGTTGCATCCATTGCCGCCGCTAACTAAATCTCTCGTCGTTGATTCTCATTCTCCACCGGCGGTGTCTTCTTCTTCCTCGTCGTCTGAGGAAGACAACCGTGAGACTAGAGAAACGGCGTTTCATTCGCCGCGGGAATCGTCTTCACTCAATCTCAGTCATGAAGAAAGCTATTACACTCCGGTTTCGCGTCGAAGTCACGGAAGTCCCACCGCGCCGGTAACTGTAACTCCGGTGGTTCCGTATTCGAAGAGAACTTCACCGAAATCTCGATTATCTGGTTCCTCGCCGGAGATGAAACGCGTAATGATACCGTCAATAAAGCAACATGCTCCGCCGTCGCCGTCAACACAATTTCAGCACAGTTCTCCTAGAAGGCCGAAATTCTCTTCGCCGCCACCGGCTCCGAATTTGATGCATCTTCATTCAAACGACTCAAGGGATTCACTTACTCTTCCTCCTCCTCGACCGCCTCCACCACCTCCTCCGCCACCGGTGGTTAGTGTATCTTCTTCTTCCTCTGTTCCAAGGAATTATCAGTGGACTCGGTCTATGAAGCATGGAATGGATTCTGCATCTGGAAACAGTGCGGGTGTGAAGAAAGCTTTGAAGGAAGATGATGAAATTGAAATGGATGAAGCAAAACCTAAATTGAAAGCTCTGCACTGGGATAAAGTTCGTGCTACTTCAGATCGTGCTACTGTGTGGGACCAATTAAAATCAAGCTCATTTCAGTTAAATGAGGATATGATGGAGACTCTATTTGGGTGTAATTCATTGAATTCTGCACCTAAACCTAAAGAGATGTCTGTTACCAGGAAACCAGTTTTTCCCACTGTTGAATTGGAGAACAGGGTTTTAGACCCCAAGAAGTCACAAAATATAGCTATTTTACTTAGGGCATTGAATGTCACAAGAGATGAAGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGCGCTGAGTTATTGGAAACTCTAGTGAAGATGGCTCCAACAAAAGAGGAGGAGATAAAACTAAAAAATTATGATGGTGACCTTTCAAAACTTGGGCCTGCAGAAAGATTTCTTAAGCAAGTGCTTGATATCCCTTTAGCTTTTAAAAGAGTTGAAGCCATGCTTTACAGAGCTAATTTTGAAACAGAAGTTATTTACCTTAAGAAATCCTTTCAAACCTTGGAGGCAGCAAGTGAGGAATTAAAGAACAGCCAATTATTCCTCAAACTTCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTTGGAACCAATCGTGGCGATGCTAAATCTTTCAAATTGGATACTCTCCTGAAACTTGCAGATATAAAAGGTACAGATGGAAAGACAACATTGCTCCATTTTGTTGTTCAAGAGATTATCAGGTCGGAAGGTACAGCCGGTGAATCTGCAAATGAGAATGTTCCAAACCAAACGAGTTCTCAGTTCAACGAGGATGAGTTTAAAAAGAAAGGATTACAGGTTGTGGCTGGATTGAGTAGAGACTTTGGTAATGTAAAAAAGGCTGCAGGAATGGACTCGGATGTCTTAAGCAGCTATGTCATAAAGCTTGAAATGGGGCTTGATAAAGTGAGATCGGTTTTGCAGTATGTAAAACCAGATATGCAAGGGAACTTCTTTAACTCAACAGAGATATTTATGAAAGACGCCAAAGAAAAAATATTAAGAATCAAAGCTGATGAGATAAGGGCCTTGTTCCTTGTGAAAGAAGTTACAGAATACTTTCATGGGGATACAACAAAGGAAGAAGCTCACCCTTTCAGAATTTTTATGATTGTTAGAGACTTCCTAAATATTTTGGATCAAGTCTGCAAAGAAGTGGGAAGGATGCAGGAAAGAACTGTGACTGGTTCATCGAGATCGTTCAGGATAGCTGCAAGTGCGTCGTTACCTGTTCTCAGCAGGTATCGTGCAAGACAAGATACAAGTTCAGATGATGAAAGTTTATCACCCTAG
Protein sequence

>Msa1407260

MKHFTFFFIILLSSFSFSLTTTLADRRILHQPLIIPVTSAPPPEFSPPPPPPDNTPPSPDIPFFNELPTGPPPPLVANNQNLPSPSGSNARIANPTATKPTKPAKKVAIAVSVAFSLFVIFSVVAFFLYKHRIKPSSETETRKLGAENSNRILEASTRVPPPSSSSNFLYIGTVVEPNGTPVSEPNCFNKLNPIGNRNRPSPELHPLPPLTKSLVVDSHSPPAVSSSSSSSEEDNRETRETAFHSPRESSSLNLSHEESYYTPVSRRSHGSPTAPVTVTPVVPYSKRTSPKSRLSGSSPEMKRVMIPSIKQHAPPSPSTQFQHSSPRRPKFSSPPPAPNLMHLHSNDSRDSLTLPPPRPPPPPPPPPVVSVSSSSSVPRNYQWTRSMKHGMDSASGNSAGVKKALKEDDEIEMDEAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGCNSLNSAPKPKEMSVTRKPVFPTVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGPAERFLKQVLDIPLAFKRVEAMLYRANFETEVIYLKKSFQTLEAASEELKNSQLFLKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLADIKGTDGKTTLLHFVVQEIIRSEGTAGESANENVPNQTSSQFNEDEFKKKGLQVVAGLSRDFGNVKKAAGMDSDVLSSYVIKLEMGLDKVRSVLQYVKPDMQGNFFNSTEIFMKDAKEKILRIKADEIRALFLVKEVTEYFHGDTTKEEAHPFRIFMIVRDFLNILDQVCKEVGRMQERTVTGSSRSFRIAASASLPVLSRYRARQDTSSDDESLSP*