AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408130 MtrunA17_Chr7g0275911 89.575 259 15 3 1 250 1 256 3.59e-166 459
Msa1408130 MtrunA17_Chr8g0346561 52.443 307 76 11 1 249 1 295 1.08e-94 280
Msa1408130 MtrunA17_Chr4g0070611 50.442 226 91 4 1 219 1 212 9.07e-70 216
Msa1408130 MtrunA17_Chr4g0070641 60.355 169 56 2 1 162 1 165 5.64e-68 207
Msa1408130 MtrunA17_Chr3g0121241 79.279 111 23 0 5 115 35 145 3.15e-65 205
Msa1408130 MtrunA17_Chr4g0037141 49.010 202 100 2 1 199 1 202 4.31e-64 201
Msa1408130 MtrunA17_Chr4g0068061 72.174 115 32 0 1 115 1 115 3.78e-63 201
Msa1408130 MtrunA17_Chr1g0194951 73.043 115 31 0 1 115 1 115 2.17e-61 197
Msa1408130 MtrunA17_Chr3g0131121 57.895 152 57 1 1 145 1 152 2.87e-60 192
Msa1408130 MtrunA17_Chr1g0187761 64.885 131 45 1 1 131 1 130 2.89e-60 191
Msa1408130 MtrunA17_Chr7g0274581 60.163 123 49 0 1 123 1 123 3.14e-58 184
Msa1408130 MtrunA17_Chr7g0261281 55.921 152 54 1 1 139 1 152 6.50e-58 185
Msa1408130 MtrunA17_Chr2g0323411 68.696 115 36 0 1 115 1 115 1.54e-57 186
Msa1408130 MtrunA17_Chr7g0217741 67.797 118 38 0 1 118 1 118 2.02e-57 185
Msa1408130 MtrunA17_Chr1g0167661 62.879 132 45 1 1 128 1 132 2.64e-57 183
Msa1408130 MtrunA17_Chr1g0167691 67.826 115 37 0 1 115 1 115 3.41e-57 182
Msa1408130 MtrunA17_Chr2g0281071 68.966 116 35 1 1 115 1 116 1.61e-56 184
Msa1408130 MtrunA17_Chr4g0039971 66.957 115 38 0 1 115 2 116 3.81e-56 183
Msa1408130 MtrunA17_Chr8g0349261 68.376 117 35 2 1 115 1 117 4.15e-56 181
Msa1408130 MtrunA17_Chr1g0203411 64.407 118 42 0 1 118 1 118 1.03e-55 180
Msa1408130 MtrunA17_Chr3g0115821 59.028 144 54 2 1 144 1 139 1.06e-55 182
Msa1408130 MtrunA17_Chr7g0269831 72.174 115 32 0 1 115 1 115 1.47e-55 181
Msa1408130 MtrunA17_Chr4g0048511 39.200 250 134 4 1 239 1 243 2.05e-55 181
Msa1408130 MtrunA17_Chr4g0060721 60.000 125 50 0 1 125 2 126 8.60e-55 179
Msa1408130 MtrunA17_Chr5g0435101 65.487 113 39 0 3 115 2 114 1.02e-54 175
Msa1408130 MtrunA17_Chr3g0092401 59.375 128 52 0 1 128 2 129 1.21e-54 178
Msa1408130 MtrunA17_Chr7g0217221 61.290 124 48 0 1 124 1 124 1.58e-54 176
Msa1408130 MtrunA17_Chr6g0453471 65.254 118 41 0 1 118 1 118 1.72e-54 179
Msa1408130 MtrunA17_Chr4g0042671 66.087 115 39 0 1 115 1 115 3.21e-54 179
Msa1408130 MtrunA17_Chr8g0385321 66.087 115 39 0 1 115 1 115 4.68e-54 176
Msa1408130 MtrunA17_Chr7g0254411 58.462 130 54 0 1 130 1 130 7.34e-54 177
Msa1408130 MtrunA17_Chr5g0410961 65.217 115 40 0 1 115 1 115 4.63e-53 175
Msa1408130 MtrunA17_Chr3g0110351 62.712 118 44 0 1 118 1 118 3.35e-52 172
Msa1408130 MtrunA17_Chr5g0434571 62.712 118 44 0 1 118 37 154 8.21e-52 172
Msa1408130 MtrunA17_Chr7g0228891 53.947 152 56 1 1 138 1 152 8.61e-52 169
Msa1408130 MtrunA17_Chr5g0395281 63.478 115 42 0 1 115 1 115 1.97e-51 169
Msa1408130 MtrunA17_Chr5g0400821 53.191 141 65 1 1 140 1 141 2.85e-51 169
Msa1408130 MtrunA17_Chr4g0055981 57.364 129 55 0 8 136 51 179 5.07e-51 166
Msa1408130 MtrunA17_Chr1g0151941 62.931 116 42 1 1 115 1 116 6.53e-51 166
Msa1408130 MtrunA17_Chr4g0057031 62.609 115 43 0 1 115 1 115 7.28e-51 167
Msa1408130 MtrunA17_Chr3g0135311 53.901 141 60 2 1 136 1 141 2.27e-50 168
Msa1408130 MtrunA17_Chr4g0044421 57.576 132 55 1 3 133 2 133 2.89e-50 163
Msa1408130 MtrunA17_Chr6g0452271 54.815 135 61 0 1 135 1 135 6.97e-50 166
Msa1408130 MtrunA17_Chr4g0022931 60.484 124 48 1 1 123 1 124 9.45e-50 164
Msa1408130 MtrunA17_Chr6g0453211 60.360 111 44 0 1 111 1 111 3.36e-49 164
Msa1408130 MtrunA17_Chr2g0311221 61.818 110 42 0 2 111 4 113 4.88e-49 164
Msa1408130 MtrunA17_Chr4g0028311 62.069 116 43 1 1 115 1 116 1.05e-48 163
Msa1408130 MtrunA17_Chr1g0152011 54.545 132 55 2 1 127 1 132 2.04e-48 162
Msa1408130 MtrunA17_Chr1g0193371 52.899 138 65 0 1 138 1 138 2.54e-48 163
Msa1408130 MtrunA17_Chr3g0103281 60.870 115 45 0 1 115 1 115 2.94e-48 162
Msa1408130 MtrunA17_Chr2g0323351 52.597 154 70 2 1 154 1 151 3.18e-48 159
Msa1408130 MtrunA17_Chr8g0343831 62.963 108 40 0 12 119 8 115 3.45e-48 159
Msa1408130 MtrunA17_Chr7g0264641 58.621 116 47 1 1 115 1 116 4.75e-48 160
Msa1408130 MtrunA17_Chr4g0022901 62.069 116 43 1 1 115 1 116 6.36e-48 159
Msa1408130 MtrunA17_Chr4g0022891 42.157 204 110 5 1 199 1 201 6.43e-48 158
Msa1408130 MtrunA17_Chr8g0387421 58.475 118 49 0 1 118 1 118 1.00e-47 160
Msa1408130 MtrunA17_Chr2g0327351 61.261 111 42 1 1 110 1 111 1.29e-47 160
Msa1408130 MtrunA17_Chr4g0054391 57.364 129 54 1 1 128 1 129 1.55e-47 159
Msa1408130 MtrunA17_Chr4g0022911 59.483 116 46 1 1 115 1 116 2.54e-47 158
Msa1408130 MtrunA17_Chr7g0270891 59.664 119 48 0 1 119 1 119 3.74e-47 160
Msa1408130 MtrunA17_Chr1g0209661 60.331 121 48 0 12 132 27 147 1.12e-46 157
Msa1408130 MtrunA17_Chr1g0193801 57.983 119 50 0 1 119 1 119 1.32e-46 159
Msa1408130 MtrunA17_Chr4g0072751 60.360 111 43 1 1 110 1 111 1.78e-46 158
Msa1408130 MtrunA17_Chr5g0397231 60.000 110 44 0 1 110 1 110 1.83e-46 157
Msa1408130 MtrunA17_Chr6g0487491 58.065 124 43 2 1 115 1 124 1.87e-46 155
Msa1408130 MtrunA17_Chr6g0450101 57.812 128 52 1 1 126 1 128 4.62e-46 152
Msa1408130 MtrunA17_Chr7g0220341 47.904 167 71 4 10 174 23 175 4.75e-46 155
Msa1408130 MtrunA17_Chr2g0330041 57.391 115 49 0 1 115 1 115 8.04e-46 157
Msa1408130 MtrunA17_Chr3g0117091 48.148 162 74 3 1 153 1 161 9.55e-46 156
Msa1408130 MtrunA17_Chr7g0240821 45.000 180 81 3 16 188 5 173 1.16e-45 152
Msa1408130 MtrunA17_Chr4g0058631 57.983 119 50 0 1 119 1 119 1.18e-45 156
Msa1408130 MtrunA17_Chr7g0228231 63.303 109 40 0 12 120 14 122 2.76e-45 150
Msa1408130 MtrunA17_Chr4g0022881 58.120 117 49 0 1 117 1 117 3.89e-45 151
Msa1408130 MtrunA17_Chr1g0168661 58.333 120 48 1 14 131 23 142 4.88e-45 151
Msa1408130 MtrunA17_Chr8g0342541 57.391 115 49 0 1 115 1 115 6.76e-45 154
Msa1408130 MtrunA17_Chr1g0186061 63.462 104 38 0 14 117 22 125 1.55e-44 150
Msa1408130 MtrunA17_Chr2g0309911 59.091 110 45 0 6 115 5 114 2.13e-44 151
Msa1408130 MtrunA17_Chr7g0271241 61.468 109 42 0 1 109 1 109 2.86e-44 153
Msa1408130 MtrunA17_Chr8g0342521 57.391 115 49 0 1 115 1 115 2.96e-44 152
Msa1408130 MtrunA17_Chr1g0194291 60.360 111 44 0 8 118 17 127 7.41e-44 149
Msa1408130 MtrunA17_Chr1g0211161 47.436 156 74 2 3 150 4 159 9.26e-44 147
Msa1408130 MtrunA17_Chr5g0434931 45.652 184 82 5 11 191 34 202 5.98e-43 147
Msa1408130 MtrunA17_Chr2g0294811 63.043 92 34 0 1 92 1 92 6.58e-43 142
Msa1408130 MtrunA17_Chr5g0434911 58.716 109 45 0 7 115 16 124 1.30e-42 146
Msa1408130 MtrunA17_Chr5g0417821 59.434 106 43 0 10 115 5 110 1.44e-42 146
Msa1408130 MtrunA17_Chr8g0342481 56.034 116 50 1 1 115 1 116 2.17e-42 148
Msa1408130 MtrunA17_Chr5g0434831 61.905 105 40 0 11 115 6 110 2.20e-42 142
Msa1408130 MtrunA17_Chr8g0360111 60.194 103 41 0 11 113 24 126 3.82e-42 144
Msa1408130 MtrunA17_Chr1g0194301 48.966 145 65 2 12 156 33 168 4.00e-42 144
Msa1408130 MtrunA17_Chr3g0088461 57.273 110 47 0 8 117 18 127 1.14e-41 145
Msa1408130 MtrunA17_Chr3g0080861 57.407 108 46 0 10 117 35 142 1.37e-41 149
Msa1408130 MtrunA17_Chr7g0228991 60.952 105 41 0 11 115 28 132 1.90e-41 143
Msa1408130 MtrunA17_Chr2g0328771 52.033 123 59 0 12 134 20 142 5.04e-41 143
Msa1408130 MtrunA17_Chr4g0032401 57.547 106 45 0 12 117 17 122 7.21e-41 143
Msa1408130 MtrunA17_Chr8g0354661 55.556 108 48 0 10 117 35 142 2.39e-40 145
Msa1408130 MtrunA17_Chr6g0470971 43.529 170 82 4 14 172 16 182 5.90e-40 139
Msa1408130 MtrunA17_Chr4g0068921 55.319 141 54 2 12 152 24 155 6.79e-40 136
Msa1408130 MtrunA17_Chr5g0434841 59.048 105 43 0 11 115 19 123 1.11e-39 139
Msa1408130 MtrunA17_Chr2g0293911 61.864 118 43 1 9 126 21 136 1.51e-39 139
Msa1408130 MtrunA17_Chr3g0099131 52.294 109 52 0 10 118 39 147 3.75e-39 142
Msa1408130 MtrunA17_Chr2g0322521 51.818 110 53 0 8 117 25 134 5.05e-39 139
Msa1408130 MtrunA17_Chr1g0203441 52.941 119 55 1 1 118 1 119 2.10e-38 135
Msa1408130 MtrunA17_Chr1g0154031 54.717 106 48 0 12 117 76 181 4.08e-38 137
Msa1408130 MtrunA17_Chr4g0030881 53.043 115 47 1 14 121 9 123 7.97e-38 133
Msa1408130 MtrunA17_Chr2g0327821 52.727 110 52 0 12 121 6 115 1.04e-37 132
Msa1408130 MtrunA17_Chr7g0247131 71.622 74 21 0 44 117 10 83 1.23e-36 130
Msa1408130 MtrunA17_Chr1g0192411 51.852 108 52 0 10 117 10 117 1.65e-36 133
Msa1408130 MtrunA17_Chr4g0042611 60.227 88 35 0 1 88 1 88 4.01e-36 123
Msa1408130 MtrunA17_Chr1g0180391 55.046 109 49 0 12 120 19 127 1.14e-35 126
Msa1408130 MtrunA17_Chr5g0395221 60.227 88 35 0 1 88 1 88 2.94e-34 118
Msa1408130 MtrunA17_Chr2g0323321 56.522 92 39 1 1 92 1 91 4.72e-32 114
Msa1408130 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.68e-31 112
Msa1408130 MtrunA17_Chr7g0229101 71.014 69 20 0 44 112 4 72 2.46e-30 112
Msa1408130 MtrunA17_Chr8g0342531 44.828 116 59 1 1 111 1 116 3.39e-30 110
Msa1408130 MtrunA17_Chr5g0440781 46.939 98 51 1 14 110 14 111 4.01e-30 111
Msa1408130 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 7.17e-30 108
Msa1408130 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 1.96e-29 107
Msa1408130 MtrunA17_Chr5g0440761 45.714 105 56 1 14 117 14 118 2.81e-29 111
Msa1408130 MtrunA17_Chr5g0441141 46.939 98 51 1 14 110 14 111 4.55e-29 110
Msa1408130 MtrunA17_Chr6g0454921 47.170 106 47 2 14 115 15 115 2.15e-28 107
Msa1408130 MtrunA17_Chr7g0229131 50.000 108 51 1 44 148 4 111 3.22e-28 105
Msa1408130 MtrunA17_Chr5g0441131 42.478 113 64 1 6 117 3 115 3.29e-28 106
Msa1408130 MtrunA17_Chr3g0099141 49.398 83 42 0 12 94 40 122 4.97e-28 104
Msa1408130 MtrunA17_Chr4g0053431 46.018 113 60 1 14 126 5 116 5.52e-28 107
Msa1408130 MtrunA17_Chr5g0401731 48.113 106 46 2 14 115 15 115 1.06e-27 108
Msa1408130 MtrunA17_Chr5g0429661 36.905 168 95 5 12 174 120 281 1.88e-27 108
Msa1408130 MtrunA17_Chr4g0008551 49.020 102 51 1 14 115 38 138 2.63e-27 107
Msa1408130 MtrunA17_Chr5g0434901 67.692 65 21 0 48 112 9 73 3.42e-27 101
Msa1408130 MtrunA17_Chr4g0013361 37.681 138 71 2 12 134 10 147 1.85e-26 104
Msa1408130 MtrunA17_Chr8g0334881 43.000 100 56 1 12 110 10 109 3.50e-26 103
Msa1408130 MtrunA17_Chr3g0133601 46.078 102 54 1 14 115 37 137 5.86e-26 101
Msa1408130 MtrunA17_Chr7g0228531 31.718 227 132 7 10 234 216 421 1.72e-25 103
Msa1408130 MtrunA17_Chr3g0117511 35.676 185 96 6 9 182 178 350 2.01e-25 103
Msa1408130 MtrunA17_Chr4g0058991 47.573 103 51 2 9 110 204 304 7.91e-25 102
Msa1408130 MtrunA17_Chr7g0238631 47.115 104 54 1 12 115 111 213 1.16e-23 99.4
Msa1408130 MtrunA17_Chr7g0238631 33.962 106 68 2 14 118 61 165 5.18e-11 62.4
Msa1408130 MtrunA17_Chr6g0480581 38.889 108 65 1 14 121 4 110 6.18e-23 93.6
Msa1408130 MtrunA17_Chr5g0437321 43.434 99 55 1 14 112 19 116 2.20e-22 93.2
Msa1408130 MtrunA17_Chr5g0425591 42.529 87 49 1 8 93 5 91 6.47e-22 87.0
Msa1408130 MtrunA17_Chr5g0417621 35.115 131 79 2 2 132 127 251 6.70e-22 94.0
Msa1408130 MtrunA17_Chr4g0042501 35.433 127 81 1 14 140 105 230 2.13e-21 92.0
Msa1408130 MtrunA17_Chr6g0460661 38.462 104 61 2 17 120 19 119 2.96e-21 87.4
Msa1408130 MtrunA17_Chr3g0125801 33.951 162 102 3 14 175 16 172 6.14e-21 89.4
Msa1408130 MtrunA17_Chr3g0093811 54.167 72 33 0 44 115 14 85 1.05e-20 88.2
Msa1408130 MtrunA17_Chr1g0157731 39.423 104 62 1 12 115 89 191 1.06e-20 90.9
Msa1408130 MtrunA17_Chr6g0460671 29.885 174 119 3 14 186 99 270 1.09e-20 89.7
Msa1408130 MtrunA17_Chr3g0139671 39.423 104 62 1 12 115 83 185 1.32e-20 90.9
Msa1408130 MtrunA17_Chr7g0238651 36.441 118 71 2 17 132 10 125 1.79e-20 89.0
Msa1408130 MtrunA17_Chr6g0453751 45.652 92 41 3 11 93 19 110 6.20e-20 82.8
Msa1408130 MtrunA17_Chr7g0228481 29.956 227 136 7 10 234 216 421 1.28e-19 87.4
Msa1408130 MtrunA17_Chr1g0177901 34.228 149 86 4 24 171 4 141 2.66e-19 83.2
Msa1408130 MtrunA17_Chr7g0228401 45.349 86 46 1 25 110 290 374 7.69e-19 85.1
Msa1408130 MtrunA17_Chr7g0254261 35.294 119 71 2 1 119 81 193 3.12e-18 82.8
Msa1408130 MtrunA17_Chr8g0362231 32.258 155 99 3 13 167 21 169 5.28e-18 82.8
Msa1408130 MtrunA17_Chr5g0397841 43.011 93 52 1 17 109 113 204 8.33e-18 82.0
Msa1408130 MtrunA17_Chr7g0233061 36.667 120 59 4 14 127 180 288 2.89e-17 80.1
Msa1408130 MtrunA17_Chr5g0416341 37.069 116 71 2 13 128 25 138 4.19e-17 80.1
Msa1408130 MtrunA17_Chr5g0434871 69.048 42 13 0 74 115 2 43 4.91e-16 70.9
Msa1408130 MtrunA17_Chr7g0247141 58.333 48 19 1 1 47 1 48 1.49e-15 69.3
Msa1408130 MtrunA17_Chr5g0434891 50.000 72 29 2 77 143 1 70 6.84e-15 69.7
Msa1408130 MtrunA17_Chr1g0193901 48.077 52 27 0 17 68 17 68 2.04e-14 67.8
Msa1408130 MtrunA17_Chr1g0193891 48.077 52 27 0 17 68 17 68 2.04e-14 67.8
Msa1408130 MtrunA17_Chr1g0193871 48.077 52 27 0 17 68 17 68 2.04e-14 67.8
Msa1408130 MtrunA17_Chr1g0193881 48.077 52 27 0 17 68 17 68 2.04e-14 67.8
Msa1408130 MtrunA17_Chr2g0322831 66.667 39 13 0 70 108 34 72 7.36e-14 65.1
Msa1408130 MtrunA17_Chr2g0288361 50.000 44 22 0 70 113 29 72 6.06e-12 60.1
Msa1408130 MtrunA17_Chr4g0024181 56.098 41 18 0 70 110 28 68 4.71e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408130 AT4G38620.1 55.747 174 59 3 1 172 1 158 3.63e-63 199
Msa1408130 AT5G49330.1 74.783 115 29 0 1 115 1 115 3.84e-63 201
Msa1408130 AT4G09460.1 49.223 193 98 0 1 193 1 193 5.36e-63 197
Msa1408130 AT3G13540.1 75.893 112 27 0 4 115 15 126 7.24e-63 197
Msa1408130 AT1G22640.1 65.649 131 45 0 1 131 1 131 3.86e-62 196
Msa1408130 AT2G47460.1 59.091 154 59 1 1 154 1 150 7.15e-62 199
Msa1408130 AT1G06180.1 63.077 130 48 0 1 130 1 130 5.36e-61 192
Msa1408130 AT2G16720.1 60.135 148 59 0 1 148 1 148 2.13e-60 192
Msa1408130 AT4G34990.1 65.217 138 46 1 1 136 1 138 1.07e-59 190
Msa1408130 AT3G62610.1 72.174 115 32 0 1 115 1 115 1.63e-59 192
Msa1408130 AT3G23250.1 66.667 120 40 0 1 120 1 120 1.99e-59 190
Msa1408130 AT5G16770.4 71.304 115 33 0 1 115 1 115 1.20e-58 189
Msa1408130 AT5G16770.3 71.304 115 33 0 1 115 1 115 1.20e-58 189
Msa1408130 AT1G35515.1 68.696 115 36 0 1 115 1 115 2.42e-58 184
Msa1408130 AT5G16770.1 71.304 115 33 0 1 115 1 115 2.44e-58 188
Msa1408130 AT5G16770.2 71.304 115 33 0 1 115 1 115 2.44e-58 188
Msa1408130 AT3G02940.2 69.565 115 35 0 1 115 1 115 6.40e-58 187
Msa1408130 AT2G31180.1 66.102 118 40 0 1 118 1 118 6.46e-58 184
Msa1408130 AT3G02940.1 69.565 115 35 0 1 115 1 115 1.20e-57 186
Msa1408130 AT3G02940.3 69.565 115 35 0 1 115 1 115 1.20e-57 186
Msa1408130 AT4G21440.1 68.696 115 36 0 1 115 1 115 1.68e-57 187
Msa1408130 AT3G61250.1 66.087 115 39 0 1 115 1 115 8.41e-57 183
Msa1408130 AT4G28110.1 66.087 115 39 0 1 115 1 115 3.84e-56 181
Msa1408130 AT5G35550.1 47.343 207 96 4 12 214 14 211 1.47e-55 179
Msa1408130 AT3G01140.2 67.826 115 37 0 1 115 1 115 1.55e-55 181
Msa1408130 AT5G15310.4 66.957 115 38 0 1 115 1 115 1.70e-55 178
Msa1408130 AT5G15310.1 66.957 115 38 0 1 115 1 115 4.49e-55 180
Msa1408130 AT1G08810.1 60.630 127 49 1 1 127 1 126 4.75e-55 178
Msa1408130 AT5G15310.2 66.957 115 38 0 1 115 1 115 5.31e-55 179
Msa1408130 AT5G60890.1 60.000 140 51 2 1 140 1 135 7.95e-55 178
Msa1408130 AT4G05100.1 67.241 116 37 1 1 115 1 116 9.74e-55 179
Msa1408130 AT3G47600.1 61.290 124 48 0 1 124 1 124 9.92e-54 176
Msa1408130 AT5G62470.2 63.559 118 43 0 1 118 1 118 3.13e-53 176
Msa1408130 AT5G10280.1 64.348 115 41 0 1 115 1 115 3.18e-53 175
Msa1408130 AT1G16490.1 63.158 114 42 0 2 115 4 117 7.21e-53 172
Msa1408130 AT1G74650.1 63.478 115 42 0 1 115 1 115 1.32e-52 174
Msa1408130 AT1G56160.1 64.912 114 40 0 2 115 4 117 1.68e-52 172
Msa1408130 AT3G01140.1 66.964 112 37 0 4 115 47 158 1.93e-52 175
Msa1408130 AT1G34670.1 65.217 115 40 0 1 115 1 115 1.99e-52 174
Msa1408130 AT1G66370.1 40.726 248 132 5 1 237 1 244 2.58e-52 170
Msa1408130 AT4G17785.2 66.379 116 38 1 1 115 1 116 3.88e-52 173
Msa1408130 AT4G17785.1 66.379 116 38 1 1 115 1 116 5.97e-52 172
Msa1408130 AT5G62470.1 63.559 118 42 1 1 118 1 117 7.04e-52 172
Msa1408130 AT4G37780.1 60.163 123 48 1 1 122 1 123 1.42e-51 170
Msa1408130 AT1G66230.1 61.864 118 45 0 1 118 1 118 1.44e-51 169
Msa1408130 AT1G79180.1 63.158 114 42 0 2 115 4 117 2.04e-51 169
Msa1408130 AT4G12350.1 55.882 136 60 0 1 136 1 136 2.44e-51 169
Msa1408130 AT3G28910.1 61.864 118 45 0 1 118 1 118 3.60e-51 169
Msa1408130 AT5G65230.1 61.739 115 44 0 1 115 1 115 1.36e-50 168
Msa1408130 AT5G14750.1 64.220 109 39 0 14 122 18 126 1.67e-50 164
Msa1408130 AT1G18570.1 54.487 156 65 2 1 155 1 151 1.85e-50 169
Msa1408130 AT5G16600.1 61.864 118 45 0 1 118 1 118 2.90e-50 167
Msa1408130 AT5G52600.1 59.016 122 49 1 12 133 12 132 4.41e-50 163
Msa1408130 AT5G62320.1 44.681 188 95 2 2 182 3 188 6.00e-50 164
Msa1408130 AT5G14340.1 64.103 117 42 0 1 117 13 129 7.42e-50 165
Msa1408130 AT1G74080.1 61.345 119 46 0 1 119 1 119 7.77e-50 166
Msa1408130 AT5G07690.1 62.281 114 43 0 1 114 1 114 1.03e-49 166
Msa1408130 AT4G22680.1 61.739 115 44 0 1 115 1 115 1.07e-49 164
Msa1408130 AT1G09540.1 55.072 138 62 0 1 138 1 138 2.51e-49 166
Msa1408130 AT5G61420.2 60.870 115 45 0 1 115 1 115 4.46e-49 165
Msa1408130 AT5G40330.1 64.706 102 36 0 14 115 14 115 1.24e-48 160
Msa1408130 AT5G65790.1 58.537 123 50 1 1 122 1 123 1.68e-48 164
Msa1408130 AT5G57620.1 54.074 135 61 1 1 134 1 135 2.69e-48 162
Msa1408130 AT5G56110.1 61.739 115 44 0 1 115 1 115 2.71e-48 162
Msa1408130 AT3G49690.1 57.724 123 51 1 1 122 1 123 3.92e-48 161
Msa1408130 AT5G54230.1 61.739 115 44 0 1 115 1 115 4.33e-48 161
Msa1408130 AT4G01680.3 47.853 163 78 2 1 163 1 156 5.08e-48 159
Msa1408130 AT5G26660.1 60.504 119 47 0 1 119 1 119 9.65e-48 161
Msa1408130 AT1G57560.2 43.062 209 86 3 1 176 1 209 1.00e-47 159
Msa1408130 AT4G01680.1 47.853 163 78 2 1 163 1 156 1.78e-47 160
Msa1408130 AT1G63910.1 57.627 118 50 0 1 118 1 118 2.41e-47 161
Msa1408130 AT3G12820.1 59.829 117 47 0 3 119 5 121 2.45e-47 157
Msa1408130 AT3G27920.1 63.725 102 37 0 14 115 16 117 3.00e-47 157
Msa1408130 AT1G56650.1 57.857 140 59 0 8 147 4 143 3.78e-47 157
Msa1408130 AT1G57560.1 60.504 119 47 0 1 119 1 119 4.83e-47 159
Msa1408130 AT5G23000.1 60.345 116 45 1 1 115 1 116 4.86e-47 159
Msa1408130 AT5G07700.1 59.130 115 47 0 1 115 1 115 9.45e-47 159
Msa1408130 AT5G07700.2 59.130 115 47 0 1 115 1 115 9.45e-47 159
Msa1408130 AT3G13890.2 58.261 115 48 0 1 115 1 115 1.02e-46 159
Msa1408130 AT2G36890.1 60.345 116 45 1 1 115 1 116 1.08e-46 157
Msa1408130 AT1G74430.1 59.664 119 48 0 1 119 1 119 1.15e-46 156
Msa1408130 AT2G36890.2 60.345 116 45 1 1 115 42 157 1.42e-46 158
Msa1408130 AT3G24310.1 59.504 121 47 1 11 129 17 137 2.34e-46 155
Msa1408130 AT3G30210.1 44.848 165 85 2 11 174 26 185 4.53e-46 155
Msa1408130 AT4G13480.1 65.385 104 36 0 14 117 8 111 1.99e-45 153
Msa1408130 AT3G27810.1 62.617 107 40 0 12 118 20 126 7.73e-45 150
Msa1408130 AT1G79180.2 48.980 147 42 1 2 115 4 150 1.05e-44 153
Msa1408130 AT5G40350.1 65.049 103 36 0 12 114 17 119 1.61e-44 149
Msa1408130 AT2G32460.1 57.009 107 46 0 11 117 17 123 1.66e-44 156
Msa1408130 AT5G12870.1 59.813 107 43 0 12 118 18 124 1.68e-44 151
Msa1408130 AT2G32460.2 57.009 107 46 0 11 117 5 111 1.72e-44 156
Msa1408130 AT4G01680.2 44.571 175 78 3 1 163 1 168 3.68e-44 152
Msa1408130 AT3G28470.1 57.273 110 47 0 1 110 1 110 4.18e-44 151
Msa1408130 AT1G68320.1 57.025 121 52 0 12 132 19 139 6.71e-44 150
Msa1408130 AT3G13890.1 54.032 124 48 1 1 115 1 124 1.33e-43 151
Msa1408130 AT3G01530.1 60.377 106 42 0 12 117 25 130 3.83e-43 145
Msa1408130 AT1G66380.1 55.147 136 61 0 8 143 4 139 5.81e-43 143
Msa1408130 AT1G25340.1 56.303 119 52 0 14 132 20 138 6.62e-43 147
Msa1408130 AT1G18710.1 53.782 119 55 0 1 119 1 119 7.27e-43 147
Msa1408130 AT3G08500.1 60.377 106 42 0 12 117 30 135 8.05e-43 149
Msa1408130 AT2G47190.1 58.491 106 44 0 12 117 20 125 1.21e-42 146
Msa1408130 AT1G66390.1 54.610 141 63 1 8 147 4 144 2.74e-42 144
Msa1408130 AT1G48000.1 61.111 108 42 0 10 117 30 137 4.26e-42 144
Msa1408130 AT3G12720.1 55.455 110 49 0 6 115 16 125 6.96e-42 145
Msa1408130 AT4G26930.1 55.046 109 49 0 10 118 17 125 3.90e-41 145
Msa1408130 AT5G35550.2 45.977 174 81 4 45 214 50 214 6.48e-40 139
Msa1408130 AT3G11440.2 54.717 106 48 0 12 117 41 146 7.04e-40 143
Msa1408130 AT5G06100.1 53.271 107 50 0 11 117 31 137 8.30e-40 143
Msa1408130 AT3G06490.1 54.861 144 56 2 9 152 16 150 1.51e-39 139
Msa1408130 AT3G46130.1 54.054 111 51 0 11 121 8 118 1.54e-39 137
Msa1408130 AT5G59780.3 54.630 108 49 0 14 121 10 117 2.66e-39 136
Msa1408130 AT5G55020.1 55.238 105 47 0 10 114 24 128 3.02e-39 142
Msa1408130 AT3G11440.3 54.717 106 48 0 12 117 41 146 3.17e-39 143
Msa1408130 AT3G11440.4 54.717 106 48 0 12 117 41 146 3.17e-39 143
Msa1408130 AT3G11440.1 54.717 106 48 0 12 117 41 146 3.17e-39 143
Msa1408130 AT5G06100.5 53.271 107 50 0 11 117 31 137 3.88e-39 142
Msa1408130 AT5G06100.2 53.271 107 50 0 11 117 31 137 3.88e-39 142
Msa1408130 AT5G06100.3 53.271 107 50 0 11 117 31 137 3.88e-39 142
Msa1408130 AT5G06100.4 53.271 107 50 0 11 117 31 137 3.88e-39 142
Msa1408130 AT1G25340.2 53.782 119 50 1 14 132 20 133 1.12e-38 136
Msa1408130 AT5G49620.1 53.061 147 60 2 12 158 26 163 1.26e-38 137
Msa1408130 AT5G14750.3 72.289 83 20 1 40 122 13 92 1.54e-38 132
Msa1408130 AT1G25340.3 53.782 119 50 1 14 132 20 133 2.01e-38 136
Msa1408130 AT3G53200.1 58.333 108 45 0 12 119 9 116 5.24e-38 133
Msa1408130 AT2G26960.1 51.376 109 53 0 9 117 17 125 1.45e-37 136
Msa1408130 AT4G25560.1 54.054 111 51 0 14 124 12 122 1.13e-36 131
Msa1408130 AT5G49620.2 47.561 164 63 3 9 158 23 177 4.95e-35 127
Msa1408130 AT3G48920.1 48.214 112 58 0 14 125 20 131 7.02e-34 123
Msa1408130 AT5G52260.1 53.271 107 50 0 14 120 14 120 4.55e-33 121
Msa1408130 AT5G26660.2 64.935 77 27 0 43 119 12 88 1.72e-31 118
Msa1408130 AT3G27810.2 67.568 74 24 0 45 118 4 77 7.95e-31 113
Msa1408130 AT3G12820.2 65.753 73 25 0 47 119 1 73 4.92e-30 111
Msa1408130 AT3G46130.4 53.535 99 42 1 23 121 2 96 5.36e-30 112
Msa1408130 AT5G59780.2 62.025 79 30 0 43 121 18 96 6.76e-30 111
Msa1408130 AT5G40350.2 70.000 70 21 0 45 114 5 74 1.07e-29 109
Msa1408130 AT3G46130.3 61.538 78 30 0 44 121 9 86 1.23e-29 111
Msa1408130 AT3G53200.2 63.636 77 28 0 43 119 7 83 1.63e-29 110
Msa1408130 AT3G47600.2 63.750 80 29 0 45 124 39 118 1.87e-29 113
Msa1408130 AT1G22640.3 64.865 74 26 0 58 131 1 74 2.84e-29 109
Msa1408130 AT1G66380.3 57.000 100 43 0 44 143 7 106 3.44e-29 106
Msa1408130 AT2G26950.1 45.098 102 56 0 17 118 21 122 1.58e-28 111
Msa1408130 AT5G14750.4 69.231 65 20 0 58 122 1 65 9.54e-28 103
Msa1408130 AT5G14750.2 69.231 65 20 0 58 122 1 65 9.54e-28 103
Msa1408130 AT3G27785.1 36.129 155 93 3 9 160 184 335 2.00e-26 106
Msa1408130 AT3G55730.1 50.000 102 50 1 14 115 56 156 6.02e-26 105
Msa1408130 AT2G23290.1 49.020 102 51 1 14 115 13 113 1.46e-25 102
Msa1408130 AT3G60460.1 42.000 100 57 1 12 110 11 110 3.53e-25 101
Msa1408130 AT4G37260.1 47.059 102 53 1 14 115 13 113 5.98e-25 101
Msa1408130 AT2G39880.1 45.370 108 58 1 14 121 50 156 7.44e-25 101
Msa1408130 AT5G40360.1 31.977 172 98 3 14 185 158 310 8.01e-25 101
Msa1408130 AT1G71030.2 60.294 68 27 0 51 118 5 72 1.40e-24 97.1
Msa1408130 AT1G71030.1 60.294 68 27 0 51 118 19 86 2.16e-24 96.7
Msa1408130 AT3G09230.1 35.955 178 99 4 14 185 55 223 2.25e-24 100
Msa1408130 AT3G23250.2 65.079 63 22 0 58 120 1 63 3.11e-24 97.1
Msa1408130 AT5G11050.1 43.333 120 63 2 14 129 105 223 3.45e-24 100
Msa1408130 AT1G66380.2 55.294 85 38 0 8 92 4 88 3.69e-24 93.6
Msa1408130 AT4G18770.1 44.737 114 54 3 9 116 212 322 6.93e-24 99.8
Msa1408130 AT5G58850.1 41.463 123 67 2 8 126 99 220 9.93e-24 99.4
Msa1408130 AT1G18960.1 43.636 110 56 3 6 115 5 108 1.11e-23 97.4
Msa1408130 AT5G02320.1 44.444 108 51 2 12 115 125 227 1.59e-23 99.4
Msa1408130 AT5G02320.2 44.444 108 51 2 12 115 125 227 1.59e-23 99.4
Msa1408130 AT5G02320.3 44.444 108 51 2 12 115 65 167 1.64e-23 99.0
Msa1408130 AT1G69560.1 36.000 125 79 1 8 132 101 224 2.08e-23 97.1
Msa1408130 AT1G69560.2 36.000 125 79 1 8 132 117 240 2.70e-23 97.1
Msa1408130 AT3G09370.1 45.370 108 50 2 12 115 128 230 5.64e-23 97.4
Msa1408130 AT3G09370.2 45.370 108 50 2 12 115 133 235 5.74e-23 97.4
Msa1408130 AT3G09370.3 45.370 108 50 2 12 115 141 243 6.68e-23 97.4
Msa1408130 AT3G50060.1 42.157 102 58 1 14 115 6 106 9.62e-23 94.7
Msa1408130 AT1G26780.1 36.885 122 76 1 12 133 96 216 1.30e-22 94.0
Msa1408130 AT1G17950.1 39.815 108 64 1 14 121 5 111 1.62e-22 93.2
Msa1408130 AT1G26780.2 36.885 122 76 1 12 133 96 216 2.67e-22 94.4
Msa1408130 AT5G11510.3 42.308 104 59 1 12 115 79 181 5.15e-22 95.1
Msa1408130 AT5G11510.1 42.308 104 59 1 12 115 79 181 5.15e-22 95.1
Msa1408130 AT5G11510.4 42.308 104 59 1 12 115 79 181 5.15e-22 95.1
Msa1408130 AT5G11510.5 42.308 104 59 1 12 115 79 181 6.17e-22 95.1
Msa1408130 AT5G11510.2 42.308 104 59 1 12 115 79 181 6.35e-22 95.1
Msa1408130 AT5G67300.1 42.453 106 52 2 14 115 6 106 7.87e-22 92.4
Msa1408130 AT5G17800.1 38.655 119 67 2 4 122 88 200 2.19e-20 88.6
Msa1408130 AT1G73410.1 41.284 109 61 2 14 121 6 112 2.75e-20 87.0
Msa1408130 AT4G32730.5 38.462 104 63 1 12 115 85 187 4.84e-20 89.4
Msa1408130 AT4G32730.4 38.462 104 63 1 12 115 85 187 4.84e-20 89.4
Msa1408130 AT4G32730.3 38.462 104 63 1 12 115 85 187 4.84e-20 89.4
Msa1408130 AT4G32730.2 38.462 104 63 1 12 115 85 187 4.84e-20 89.4
Msa1408130 AT2G02820.3 30.806 211 109 7 13 190 29 235 5.05e-20 87.8
Msa1408130 AT4G32730.1 38.462 104 63 1 12 115 85 187 5.10e-20 89.4
Msa1408130 AT1G73410.2 41.284 109 61 2 14 121 6 112 5.49e-20 85.5
Msa1408130 AT2G02820.1 30.806 211 109 7 13 190 29 235 1.16e-19 87.8
Msa1408130 AT2G37630.1 38.462 117 68 2 14 128 4 118 1.41e-19 87.0
Msa1408130 AT4G33450.1 36.842 114 66 2 5 118 15 122 1.54e-19 85.1
Msa1408130 AT2G02820.2 30.806 211 109 7 13 190 29 235 2.06e-19 87.4
Msa1408130 AT2G25230.1 39.216 102 61 1 9 110 21 121 2.34e-19 84.3
Msa1408130 AT3G29020.1 35.849 106 67 1 14 119 65 169 3.30e-19 84.0
Msa1408130 AT3G29020.2 35.849 106 67 1 14 119 67 171 6.43e-19 84.3
Msa1408130 AT1G14350.2 29.557 203 123 4 13 196 24 225 7.80e-18 82.4
Msa1408130 AT1G14350.1 29.557 203 123 4 13 196 24 225 7.80e-18 82.4
Msa1408130 AT5G39700.1 37.037 108 66 2 13 119 54 160 2.06e-16 75.5
Msa1408130 AT5G40430.1 34.483 116 68 3 17 132 57 164 1.21e-15 74.7
Msa1408130 AT4G00540.2 37.963 108 63 2 11 115 100 206 1.34e-15 75.9
Msa1408130 AT4G00540.1 38.318 107 62 2 12 115 99 204 2.46e-15 75.1
Msa1408130 AT5G59780.1 57.692 52 22 0 70 121 1 52 2.58e-15 72.0
Msa1408130 AT3G46130.2 57.692 52 22 0 70 121 1 52 3.02e-15 72.4
Msa1408130 AT4G25560.2 58.182 55 23 0 70 124 2 56 1.42e-14 70.9
Msa1408130 AT4G01060.1 60.000 40 16 0 69 108 34 73 1.00e-12 62.4
Msa1408130 AT4G01060.2 60.000 40 16 0 69 108 31 70 1.04e-12 62.4
Msa1408130 AT4G01060.3 60.000 40 16 0 69 108 32 71 1.48e-12 62.0
Msa1408130 AT1G14350.3 30.625 160 92 3 56 196 23 182 3.27e-12 65.9
Msa1408130 AT1G14350.4 30.625 160 92 3 56 196 23 182 3.27e-12 65.9
Msa1408130 AT2G46410.1 60.000 40 16 0 69 108 37 76 5.99e-12 60.8
Msa1408130 AT1G22640.2 61.364 44 17 0 88 131 16 59 1.23e-11 62.4
Msa1408130 AT3G28910.2 61.905 42 16 0 77 118 1 42 1.23e-11 63.2
Msa1408130 AT5G53200.1 60.000 40 16 0 69 108 32 71 1.34e-11 60.1
Msa1408130 AT1G74650.3 64.103 39 14 0 77 115 1 39 1.86e-11 62.8
Msa1408130 AT2G30424.1 47.368 57 26 1 69 121 35 91 3.47e-11 58.9
Msa1408130 AT1G01380.1 58.974 39 16 0 70 108 34 72 7.95e-11 57.4

Find 54 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGAATGCATTCACTTAT+TGG 0.135589 tig0023376:-13302 Msa1408130:CDS
TCCATGAGCTTGAATATATT+TGG 0.157966 tig0023376:+13809 None:intergenic
GGACATAACAAAGTTGTATA+TGG 0.193071 tig0023376:-13986 Msa1408130:five_prime_UTR
AAAGTCTTCTTCACCCTTAC+AGG 0.210306 tig0023376:+13098 None:intergenic
ATGTTTCCTCTCTTTATATC+TGG 0.242748 tig0023376:+13350 None:intergenic
TATTATTACTCACGCTAATA+AGG 0.245917 tig0023376:+12797 None:intergenic
AGCTTGTATAAGCTATCTTT+TGG 0.282299 tig0023376:-14007 Msa1408130:five_prime_UTR
CTCTGAATCTTCTGGTACTT+TGG 0.290467 tig0023376:+13148 None:intergenic
GTCTTCTTCTCTGAATCTTC+TGG 0.314257 tig0023376:+13140 None:intergenic
TTCTTCACCCTTACAGGCTT+TGG 0.316400 tig0023376:+13104 None:intergenic
CTGGTAATCTTCCCGCAATA+AGG 0.325587 tig0023376:+13267 None:intergenic
CTCCTTGTTGTTCAAAAGTT+GGG 0.343674 tig0023376:-13875 Msa1408130:CDS
ATAGCTTATACAAGCTCTTA+AGG 0.353829 tig0023376:+14014 None:intergenic
ATAATGAGATAAAGAATTAC+TGG 0.355857 tig0023376:-13235 Msa1408130:CDS
TTCAAGGTACTATCAGTTCT+TGG 0.362962 tig0023376:+13062 None:intergenic
GAGAGAGACAATGATGGGTT+TGG 0.365978 tig0023376:-12975 Msa1408130:CDS
ACTCCTTGTTGTTCAAAAGT+TGG 0.384251 tig0023376:-13876 Msa1408130:CDS
ATGATAAGGTCATCTTCTTC+TGG 0.393173 tig0023376:+13323 None:intergenic
TTTATCTACCAAAGCCTGTA+AGG 0.398170 tig0023376:-13112 Msa1408130:CDS
ATTCACTTATTGGTAATAGA+TGG 0.418745 tig0023376:-13292 Msa1408130:CDS
TGAGTTGTATTCCAAGTTCA+AGG 0.431861 tig0023376:+13046 None:intergenic
ACCAAATATATTCAAGCTCA+TGG 0.438518 tig0023376:-13810 Msa1408130:CDS
GACATAACAAAGTTGTATAT+GGG 0.445452 tig0023376:-13985 Msa1408130:five_prime_UTR
CTTCTAACTACTAATAAAGA+TGG 0.451150 tig0023376:-13904 Msa1408130:exon
GTGAATGCATTCTCATGATA+AGG 0.457005 tig0023376:+13309 None:intergenic
GATGACATGGAATGCCAATC+TGG 0.458733 tig0023376:-12909 Msa1408130:CDS
TGGTAATCTTCCCGCAATAA+GGG 0.465384 tig0023376:+13268 None:intergenic
AACTGATAGTACCTTGAACT+TGG 0.466248 tig0023376:-13057 Msa1408130:CDS
AACAACAAGCCAAGCGGAAG+AGG 0.468583 tig0023376:-13021 Msa1408130:CDS
AGGCTTTGGTAGATAAACTA+AGG 0.484404 tig0023376:+13118 None:intergenic
AGACACTTAAAATTTGAAGC+AGG 0.489795 tig0023376:+13930 None:intergenic
TTTGCTCTTCCTCTTCCGCT+TGG 0.490411 tig0023376:+13012 None:intergenic
CTTATTGCGGGAAGATTACC+AGG 0.506861 tig0023376:-13266 Msa1408130:CDS
AATAGATGGTCCCTTATTGC+GGG 0.508874 tig0023376:-13278 Msa1408130:CDS
ATCTCATTATCTGTACGTCC+TGG 0.523825 tig0023376:+13248 None:intergenic
ACAAAAGAGAGAGACAATGA+TGG 0.536178 tig0023376:-12981 Msa1408130:CDS
TAATAGATGGTCCCTTATTG+CGG 0.544581 tig0023376:-13279 Msa1408130:CDS
GGAACAGTACCATGCAGACT+TGG 0.548293 tig0023376:-12940 Msa1408130:CDS
TCTTCTCAAGAAAACCAGAT+TGG 0.548395 tig0023376:+12895 None:intergenic
TATATTCAAGCTCATGGAGA+AGG 0.548578 tig0023376:-13804 Msa1408130:CDS
TTCTAACTACTAATAAAGAT+GGG 0.558595 tig0023376:-13903 Msa1408130:exon
GCATCTTCACGTGAAGTCCA+TGG 0.559783 tig0023376:+13840 None:intergenic
AAGCTCATGGAGAAGGCCAA+TGG 0.567347 tig0023376:-13797 Msa1408130:CDS
CTTGGTCAACAATGATGACA+TGG 0.569109 tig0023376:-12922 Msa1408130:CDS
TGGGTTTGGATTGTTGTTTG+AGG 0.571835 tig0023376:-12961 Msa1408130:CDS
TCAAAAGTTGGGTTGCATAG+AGG 0.572944 tig0023376:-13864 Msa1408130:CDS
TTATCTACCAAAGCCTGTAA+GGG 0.582095 tig0023376:-13111 Msa1408130:CDS
CATTGTTGACCAAGTCTGCA+TGG 0.585314 tig0023376:+12931 None:intergenic
TTGGGTTGCATAGAGGTCCA+TGG 0.594780 tig0023376:-13857 Msa1408130:CDS
TAAGGATAATGACATGATGA+TGG 0.597325 tig0023376:+14032 None:intergenic
CAAAAGAGAGAGACAATGAT+GGG 0.597587 tig0023376:-12980 Msa1408130:CDS
CTAAGACCAGATATAAAGAG+AGG 0.606370 tig0023376:-13356 Msa1408130:CDS
CTCAGCAACAACAAGCCAAG+CGG 0.628358 tig0023376:-13027 Msa1408130:CDS
GATGCAGGGCTTCTTAGATG+TGG 0.659065 tig0023376:-13410 Msa1408130:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTAACTACTAATAAAGAT+GGG - tig0023376:12941-12960 Msa1408130:CDS 20.0%
!! ATAATGAGATAAAGAATTAC+TGG - tig0023376:13609-13628 Msa1408130:intron 20.0%
!! TTCTAACTACTAATAAAGAT+GGG - tig0023376:12941-12960 Msa1408130:CDS 20.0%
!! ATAATGAGATAAAGAATTAC+TGG - tig0023376:13609-13628 Msa1408130:intron 20.0%
! GACATAACAAAGTTGTATAT+GGG - tig0023376:12859-12878 Msa1408130:CDS 25.0%
! CTTCTAACTACTAATAAAGA+TGG - tig0023376:12940-12959 Msa1408130:CDS 25.0%
!! ATTAAATTACCAGCTCTTTT+TGG + tig0023376:13082-13101 None:intergenic 25.0%
! TCGTTTGCTCAAATTATTAT+TGG - tig0023376:13216-13235 Msa1408130:CDS 25.0%
! AAAAATGATGTAATGAAGGA+CGG + tig0023376:13283-13302 None:intergenic 25.0%
!!! TCCTTCATTACATCATTTTT+TGG - tig0023376:13283-13302 Msa1408130:CDS 25.0%
! TCCAAAAAATGATGTAATGA+AGG + tig0023376:13287-13306 None:intergenic 25.0%
!! TTTTCTATGTCACTAATGTT+TGG - tig0023376:13347-13366 Msa1408130:CDS 25.0%
!! ATTCACTTATTGGTAATAGA+TGG - tig0023376:13552-13571 Msa1408130:intron 25.0%
!! AATACTAGATTCTTCTTTTG+CGG - tig0023376:14021-14040 Msa1408130:five_prime_UTR 25.0%
! GACATAACAAAGTTGTATAT+GGG - tig0023376:12859-12878 Msa1408130:CDS 25.0%
! CTTCTAACTACTAATAAAGA+TGG - tig0023376:12940-12959 Msa1408130:CDS 25.0%
!! ATTAAATTACCAGCTCTTTT+TGG + tig0023376:13082-13101 None:intergenic 25.0%
! TCGTTTGCTCAAATTATTAT+TGG - tig0023376:13216-13235 Msa1408130:CDS 25.0%
! AAAAATGATGTAATGAAGGA+CGG + tig0023376:13283-13302 None:intergenic 25.0%
!!! TCCTTCATTACATCATTTTT+TGG - tig0023376:13283-13302 Msa1408130:CDS 25.0%
! TCCAAAAAATGATGTAATGA+AGG + tig0023376:13287-13306 None:intergenic 25.0%
!! TTTTCTATGTCACTAATGTT+TGG - tig0023376:13347-13366 Msa1408130:CDS 25.0%
!! ATTCACTTATTGGTAATAGA+TGG - tig0023376:13552-13571 Msa1408130:intron 25.0%
!! AATACTAGATTCTTCTTTTG+CGG - tig0023376:14021-14040 Msa1408130:five_prime_UTR 25.0%
TAAGGATAATGACATGATGA+TGG + tig0023376:12815-12834 None:intergenic 30.0%
ATAGCTTATACAAGCTCTTA+AGG + tig0023376:12833-12852 None:intergenic 30.0%
! AGCTTGTATAAGCTATCTTT+TGG - tig0023376:12837-12856 Msa1408130:CDS 30.0%
GGACATAACAAAGTTGTATA+TGG - tig0023376:12858-12877 Msa1408130:CDS 30.0%
! AGACACTTAAAATTTGAAGC+AGG + tig0023376:12917-12936 None:intergenic 30.0%
ACCAAATATATTCAAGCTCA+TGG - tig0023376:13034-13053 Msa1408130:CDS 30.0%
TCCATGAGCTTGAATATATT+TGG + tig0023376:13038-13057 None:intergenic 30.0%
ATGTTTCCTCTCTTTATATC+TGG + tig0023376:13497-13516 None:intergenic 30.0%
ATGAGAATGCATTCACTTAT+TGG - tig0023376:13542-13561 Msa1408130:intron 30.0%
TAAGGATAATGACATGATGA+TGG + tig0023376:12815-12834 None:intergenic 30.0%
ATAGCTTATACAAGCTCTTA+AGG + tig0023376:12833-12852 None:intergenic 30.0%
! AGCTTGTATAAGCTATCTTT+TGG - tig0023376:12837-12856 Msa1408130:CDS 30.0%
GGACATAACAAAGTTGTATA+TGG - tig0023376:12858-12877 Msa1408130:CDS 30.0%
! AGACACTTAAAATTTGAAGC+AGG + tig0023376:12917-12936 None:intergenic 30.0%
ACCAAATATATTCAAGCTCA+TGG - tig0023376:13034-13053 Msa1408130:CDS 30.0%
TCCATGAGCTTGAATATATT+TGG + tig0023376:13038-13057 None:intergenic 30.0%
ATGTTTCCTCTCTTTATATC+TGG + tig0023376:13497-13516 None:intergenic 30.0%
ATGAGAATGCATTCACTTAT+TGG - tig0023376:13542-13561 Msa1408130:intron 30.0%
!! ACTCCTTGTTGTTCAAAAGT+TGG - tig0023376:12968-12987 Msa1408130:CDS 35.0%
!! CTCCTTGTTGTTCAAAAGTT+GGG - tig0023376:12969-12988 Msa1408130:CDS 35.0%
! AACCCAACTTTTGAACAACA+AGG + tig0023376:12974-12993 None:intergenic 35.0%
TATATTCAAGCTCATGGAGA+AGG - tig0023376:13040-13059 Msa1408130:CDS 35.0%
!! TTTTTGGAAGTGATCTCCAT+TGG + tig0023376:13066-13085 None:intergenic 35.0%
AGATATAAGTGTCAAGACAC+AGG + tig0023376:13177-13196 None:intergenic 35.0%
TTACAGGAGATAAAGGATCT+AGG + tig0023376:13374-13393 None:intergenic 35.0%
CTAAGTCTTACAGGAGATAA+AGG + tig0023376:13381-13400 None:intergenic 35.0%
GAAAAAGTTGCAGACTAAGA+TGG - tig0023376:13456-13475 Msa1408130:intron 35.0%
CTAAGACCAGATATAAAGAG+AGG - tig0023376:13488-13507 Msa1408130:intron 35.0%
ATGATAAGGTCATCTTCTTC+TGG + tig0023376:13524-13543 None:intergenic 35.0%
GTGAATGCATTCTCATGATA+AGG + tig0023376:13538-13557 None:intergenic 35.0%
TAATAGATGGTCCCTTATTG+CGG - tig0023376:13565-13584 Msa1408130:intron 35.0%
! AGGCTTTGGTAGATAAACTA+AGG + tig0023376:13729-13748 None:intergenic 35.0%
TTTATCTACCAAAGCCTGTA+AGG - tig0023376:13732-13751 Msa1408130:intron 35.0%
TTATCTACCAAAGCCTGTAA+GGG - tig0023376:13733-13752 Msa1408130:intron 35.0%
! TTCAAGGTACTATCAGTTCT+TGG + tig0023376:13785-13804 None:intergenic 35.0%
AACTGATAGTACCTTGAACT+TGG - tig0023376:13787-13806 Msa1408130:CDS 35.0%
TGAGTTGTATTCCAAGTTCA+AGG + tig0023376:13801-13820 None:intergenic 35.0%
ACAAAAGAGAGAGACAATGA+TGG - tig0023376:13863-13882 Msa1408130:CDS 35.0%
CAAAAGAGAGAGACAATGAT+GGG - tig0023376:13864-13883 Msa1408130:CDS 35.0%
TCTTCTCAAGAAAACCAGAT+TGG + tig0023376:13952-13971 None:intergenic 35.0%
!! ACTCCTTGTTGTTCAAAAGT+TGG - tig0023376:12968-12987 Msa1408130:CDS 35.0%
!! CTCCTTGTTGTTCAAAAGTT+GGG - tig0023376:12969-12988 Msa1408130:CDS 35.0%
! AACCCAACTTTTGAACAACA+AGG + tig0023376:12974-12993 None:intergenic 35.0%
TATATTCAAGCTCATGGAGA+AGG - tig0023376:13040-13059 Msa1408130:CDS 35.0%
!! TTTTTGGAAGTGATCTCCAT+TGG + tig0023376:13066-13085 None:intergenic 35.0%
AGATATAAGTGTCAAGACAC+AGG + tig0023376:13177-13196 None:intergenic 35.0%
TTACAGGAGATAAAGGATCT+AGG + tig0023376:13374-13393 None:intergenic 35.0%
CTAAGTCTTACAGGAGATAA+AGG + tig0023376:13381-13400 None:intergenic 35.0%
GAAAAAGTTGCAGACTAAGA+TGG - tig0023376:13456-13475 Msa1408130:intron 35.0%
CTAAGACCAGATATAAAGAG+AGG - tig0023376:13488-13507 Msa1408130:intron 35.0%
ATGATAAGGTCATCTTCTTC+TGG + tig0023376:13524-13543 None:intergenic 35.0%
GTGAATGCATTCTCATGATA+AGG + tig0023376:13538-13557 None:intergenic 35.0%
TAATAGATGGTCCCTTATTG+CGG - tig0023376:13565-13584 Msa1408130:intron 35.0%
! AGGCTTTGGTAGATAAACTA+AGG + tig0023376:13729-13748 None:intergenic 35.0%
TTTATCTACCAAAGCCTGTA+AGG - tig0023376:13732-13751 Msa1408130:intron 35.0%
TTATCTACCAAAGCCTGTAA+GGG - tig0023376:13733-13752 Msa1408130:intron 35.0%
! TTCAAGGTACTATCAGTTCT+TGG + tig0023376:13785-13804 None:intergenic 35.0%
AACTGATAGTACCTTGAACT+TGG - tig0023376:13787-13806 Msa1408130:CDS 35.0%
TGAGTTGTATTCCAAGTTCA+AGG + tig0023376:13801-13820 None:intergenic 35.0%
ACAAAAGAGAGAGACAATGA+TGG - tig0023376:13863-13882 Msa1408130:CDS 35.0%
CAAAAGAGAGAGACAATGAT+GGG - tig0023376:13864-13883 Msa1408130:CDS 35.0%
TCTTCTCAAGAAAACCAGAT+TGG + tig0023376:13952-13971 None:intergenic 35.0%
! TCAAAAGTTGGGTTGCATAG+AGG - tig0023376:12980-12999 Msa1408130:CDS 40.0%
AGATCACTTCCAAAAAGAGC+TGG - tig0023376:13070-13089 Msa1408130:CDS 40.0%
GTAAGGTTGCTAAGTCTTAC+AGG + tig0023376:13390-13409 None:intergenic 40.0%
AGCAACCTTACGTGAAAGAA+TGG - tig0023376:13399-13418 Msa1408130:CDS 40.0%
GCAACCTTACGTGAAAGAAT+GGG - tig0023376:13400-13419 Msa1408130:CDS 40.0%
AATAGATGGTCCCTTATTGC+GGG - tig0023376:13566-13585 Msa1408130:intron 40.0%
TGGTAATCTTCCCGCAATAA+GGG + tig0023376:13579-13598 None:intergenic 40.0%
ATCTCATTATCTGTACGTCC+TGG + tig0023376:13599-13618 None:intergenic 40.0%
CTCTGAATCTTCTGGTACTT+TGG + tig0023376:13699-13718 None:intergenic 40.0%
GTCTTCTTCTCTGAATCTTC+TGG + tig0023376:13707-13726 None:intergenic 40.0%
AAAGTCTTCTTCACCCTTAC+AGG + tig0023376:13749-13768 None:intergenic 40.0%
!! TGGGTTTGGATTGTTGTTTG+AGG - tig0023376:13883-13902 Msa1408130:CDS 40.0%
CTTGGTCAACAATGATGACA+TGG - tig0023376:13922-13941 Msa1408130:five_prime_UTR 40.0%
! TCAAAAGTTGGGTTGCATAG+AGG - tig0023376:12980-12999 Msa1408130:CDS 40.0%
AGATCACTTCCAAAAAGAGC+TGG - tig0023376:13070-13089 Msa1408130:CDS 40.0%
GTAAGGTTGCTAAGTCTTAC+AGG + tig0023376:13390-13409 None:intergenic 40.0%
AGCAACCTTACGTGAAAGAA+TGG - tig0023376:13399-13418 Msa1408130:CDS 40.0%
GCAACCTTACGTGAAAGAAT+GGG - tig0023376:13400-13419 Msa1408130:CDS 40.0%
AATAGATGGTCCCTTATTGC+GGG - tig0023376:13566-13585 Msa1408130:intron 40.0%
TGGTAATCTTCCCGCAATAA+GGG + tig0023376:13579-13598 None:intergenic 40.0%
ATCTCATTATCTGTACGTCC+TGG + tig0023376:13599-13618 None:intergenic 40.0%
CTCTGAATCTTCTGGTACTT+TGG + tig0023376:13699-13718 None:intergenic 40.0%
GTCTTCTTCTCTGAATCTTC+TGG + tig0023376:13707-13726 None:intergenic 40.0%
AAAGTCTTCTTCACCCTTAC+AGG + tig0023376:13749-13768 None:intergenic 40.0%
!! TGGGTTTGGATTGTTGTTTG+AGG - tig0023376:13883-13902 Msa1408130:CDS 40.0%
CTTGGTCAACAATGATGACA+TGG - tig0023376:13922-13941 Msa1408130:five_prime_UTR 40.0%
TTACAAGCACGAACACTGCT+CGG - tig0023376:13141-13160 Msa1408130:CDS 45.0%
ATGAAGGACGGACACATACA+CGG + tig0023376:13271-13290 None:intergenic 45.0%
CCAACCCATTCTTTCACGTA+AGG + tig0023376:13407-13426 None:intergenic 45.0%
CCTTACGTGAAAGAATGGGT+TGG - tig0023376:13404-13423 Msa1408130:CDS 45.0%
!! TACGTGAAAGAATGGGTTGG+TGG - tig0023376:13407-13426 Msa1408130:intron 45.0%
CTGGTAATCTTCCCGCAATA+AGG + tig0023376:13580-13599 None:intergenic 45.0%
CTTATTGCGGGAAGATTACC+AGG - tig0023376:13578-13597 Msa1408130:intron 45.0%
TTCTTCACCCTTACAGGCTT+TGG + tig0023376:13743-13762 None:intergenic 45.0%
!! GAGAGAGACAATGATGGGTT+TGG - tig0023376:13869-13888 Msa1408130:CDS 45.0%
CATTGTTGACCAAGTCTGCA+TGG + tig0023376:13916-13935 None:intergenic 45.0%
GATGACATGGAATGCCAATC+TGG - tig0023376:13935-13954 Msa1408130:five_prime_UTR 45.0%
TTACAAGCACGAACACTGCT+CGG - tig0023376:13141-13160 Msa1408130:CDS 45.0%
ATGAAGGACGGACACATACA+CGG + tig0023376:13271-13290 None:intergenic 45.0%
CCAACCCATTCTTTCACGTA+AGG + tig0023376:13407-13426 None:intergenic 45.0%
CCTTACGTGAAAGAATGGGT+TGG - tig0023376:13404-13423 Msa1408130:CDS 45.0%
!! TACGTGAAAGAATGGGTTGG+TGG - tig0023376:13407-13426 Msa1408130:intron 45.0%
CTGGTAATCTTCCCGCAATA+AGG + tig0023376:13580-13599 None:intergenic 45.0%
CTTATTGCGGGAAGATTACC+AGG - tig0023376:13578-13597 Msa1408130:intron 45.0%
TTCTTCACCCTTACAGGCTT+TGG + tig0023376:13743-13762 None:intergenic 45.0%
!! GAGAGAGACAATGATGGGTT+TGG - tig0023376:13869-13888 Msa1408130:CDS 45.0%
CATTGTTGACCAAGTCTGCA+TGG + tig0023376:13916-13935 None:intergenic 45.0%
GATGACATGGAATGCCAATC+TGG - tig0023376:13935-13954 Msa1408130:five_prime_UTR 45.0%
! TTGGGTTGCATAGAGGTCCA+TGG - tig0023376:12987-13006 Msa1408130:CDS 50.0%
GCATCTTCACGTGAAGTCCA+TGG + tig0023376:13007-13026 None:intergenic 50.0%
AAGCTCATGGAGAAGGCCAA+TGG - tig0023376:13047-13066 Msa1408130:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG - tig0023376:13434-13453 Msa1408130:intron 50.0%
CTCAGCAACAACAAGCCAAG+CGG - tig0023376:13817-13836 Msa1408130:CDS 50.0%
AACAACAAGCCAAGCGGAAG+AGG - tig0023376:13823-13842 Msa1408130:CDS 50.0%
TTTGCTCTTCCTCTTCCGCT+TGG + tig0023376:13835-13854 None:intergenic 50.0%
GGAACAGTACCATGCAGACT+TGG - tig0023376:13904-13923 Msa1408130:exon 50.0%
! TTGGGTTGCATAGAGGTCCA+TGG - tig0023376:12987-13006 Msa1408130:CDS 50.0%
GCATCTTCACGTGAAGTCCA+TGG + tig0023376:13007-13026 None:intergenic 50.0%
AAGCTCATGGAGAAGGCCAA+TGG - tig0023376:13047-13066 Msa1408130:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG - tig0023376:13434-13453 Msa1408130:intron 50.0%
CTCAGCAACAACAAGCCAAG+CGG - tig0023376:13817-13836 Msa1408130:CDS 50.0%
AACAACAAGCCAAGCGGAAG+AGG - tig0023376:13823-13842 Msa1408130:CDS 50.0%
TTTGCTCTTCCTCTTCCGCT+TGG + tig0023376:13835-13854 None:intergenic 50.0%
GGAACAGTACCATGCAGACT+TGG - tig0023376:13904-13923 Msa1408130:exon 50.0%
!! TGGGTTGGTGGTTGTGATGC+AGG - tig0023376:13419-13438 Msa1408130:intron 55.0%
!! GGGTTGGTGGTTGTGATGCA+GGG - tig0023376:13420-13439 Msa1408130:intron 55.0%
!! TGGGTTGGTGGTTGTGATGC+AGG - tig0023376:13419-13438 Msa1408130:intron 55.0%
!! GGGTTGGTGGTTGTGATGCA+GGG - tig0023376:13420-13439 Msa1408130:intron 55.0%
Chromosome Type Strat End Strand Name
tig0023376 gene 12806 14060 12806 ID=Msa1408130;Name=Msa1408130
tig0023376 mRNA 12806 14060 12806 ID=Msa1408130-mRNA-1;Parent=Msa1408130;Name=Msa1408130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|1|0.5|1|1|1|2|0|250
tig0023376 exon 12806 13425 12806 ID=Msa1408130-mRNA-1:exon:25518;Parent=Msa1408130-mRNA-1
tig0023376 exon 13775 14060 13775 ID=Msa1408130-mRNA-1:exon:25517;Parent=Msa1408130-mRNA-1
tig0023376 five_prime_UTR 13908 14060 13908 ID=Msa1408130-mRNA-1:five_prime_utr;Parent=Msa1408130-mRNA-1
tig0023376 CDS 13775 13907 13775 ID=Msa1408130-mRNA-1:cds;Parent=Msa1408130-mRNA-1
tig0023376 CDS 12806 13425 12806 ID=Msa1408130-mRNA-1:cds;Parent=Msa1408130-mRNA-1
Gene Sequence

>Msa1408130

ATGGGAAGAACTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCACGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTAGATGTGGAAAAAGTTGCAGACTAAGATGGATGAACTATCTAAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGATGACCTTATCATGAGAATGCATTCACTTATTGGTAATAGATGGTCCCTTATTGCGGGAAGATTACCAGGACGTACAGATAATGAGATAAAGAATTACTGGAACACACATCTCAGTAAAAAGAAGAAAAAGAAGCAGAAGAAAAATGACAAGAACAGAGTCATAACCAAAGTACCAGAAGATTCAGAGAAGAAGACCTTAGTTTATCTACCAAAGCCTGTAAGGGTGAAGAAGACTTTATCATCAATAATACCAAGAACTGATAGTACCTTGAACTTGGAATACAACTCAGCAACAACAAGCCAAGCGGAAGAGGAAGAGCAAAGAGCAGAAACAAAAGAGAGAGACAATGATGGGTTTGGATTGTTGTTTGAGGAACAGTACCATGCAGACTTGGTCAACAATGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTATTGAAGAATGAAGAAAATCATGAAAAAATACTAGATTCTTCTTTTGCGGAGTCCTTATTAGCGTGA

Protein sequence

>Msa1408130

MGRTPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIMRMHSLIGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKKKKKQKKNDKNRVITKVPEDSEKKTLVYLPKPVRVKKTLSSIIPRTDSTLNLEYNSATTSQAEEEEQRAETKERDNDGFGLLFEEQYHADLVNNDDMECQSGFLEKMYEEYLQLLKNEENHEKILDSSFAESLLA*