AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1448930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448930 MtrunA17_Chr7g0275911 87.209 258 22 3 1 250 1 255 2.45e-164 454
Msa1448930 MtrunA17_Chr8g0346561 52.273 308 76 11 1 250 1 295 2.16e-95 281
Msa1448930 MtrunA17_Chr4g0070611 50.220 227 91 4 1 220 1 212 1.87e-69 216
Msa1448930 MtrunA17_Chr4g0070641 60.000 170 56 2 1 163 1 165 1.02e-67 206
Msa1448930 MtrunA17_Chr3g0121241 79.279 111 23 0 5 115 35 145 4.21e-65 204
Msa1448930 MtrunA17_Chr4g0068061 72.174 115 32 0 1 115 1 115 4.68e-63 200
Msa1448930 MtrunA17_Chr4g0037141 49.505 202 100 2 1 200 1 202 1.09e-62 197
Msa1448930 MtrunA17_Chr1g0194951 73.043 115 31 0 1 115 1 115 2.49e-61 197
Msa1448930 MtrunA17_Chr1g0187761 60.690 145 44 1 1 132 1 145 1.23e-60 191
Msa1448930 MtrunA17_Chr3g0131121 72.174 115 32 0 1 115 1 115 1.45e-59 190
Msa1448930 MtrunA17_Chr7g0274581 60.163 123 49 0 1 123 1 123 3.20e-58 184
Msa1448930 MtrunA17_Chr7g0261281 62.903 124 46 0 1 124 1 124 7.89e-58 185
Msa1448930 MtrunA17_Chr1g0167661 61.314 137 49 1 1 133 1 137 2.01e-57 183
Msa1448930 MtrunA17_Chr2g0323411 68.696 115 36 0 1 115 1 115 2.04e-57 185
Msa1448930 MtrunA17_Chr7g0217741 67.797 118 38 0 1 118 1 118 2.15e-57 185
Msa1448930 MtrunA17_Chr1g0167691 67.826 115 37 0 1 115 1 115 3.71e-57 182
Msa1448930 MtrunA17_Chr2g0281071 68.966 116 35 1 1 115 1 116 2.34e-56 183
Msa1448930 MtrunA17_Chr7g0269831 60.959 146 57 0 1 146 1 146 2.93e-56 183
Msa1448930 MtrunA17_Chr4g0039971 66.957 115 38 0 1 115 2 116 4.97e-56 182
Msa1448930 MtrunA17_Chr8g0349261 68.376 117 35 2 1 115 1 117 5.43e-56 181
Msa1448930 MtrunA17_Chr1g0203411 60.769 130 49 1 1 130 1 128 7.74e-56 180
Msa1448930 MtrunA17_Chr3g0115821 66.957 115 38 0 1 115 1 115 1.14e-55 181
Msa1448930 MtrunA17_Chr3g0092401 57.037 135 58 0 1 135 2 136 3.03e-55 179
Msa1448930 MtrunA17_Chr4g0048511 68.966 116 35 1 1 115 1 116 3.89e-55 181
Msa1448930 MtrunA17_Chr4g0060721 60.000 125 50 0 1 125 2 126 1.07e-54 179
Msa1448930 MtrunA17_Chr5g0435101 65.487 113 39 0 3 115 2 114 1.29e-54 174
Msa1448930 MtrunA17_Chr6g0453471 65.254 118 41 0 1 118 1 118 1.94e-54 179
Msa1448930 MtrunA17_Chr7g0217221 61.290 124 48 0 1 124 1 124 2.26e-54 176
Msa1448930 MtrunA17_Chr4g0042671 66.087 115 39 0 1 115 1 115 3.24e-54 179
Msa1448930 MtrunA17_Chr8g0385321 66.087 115 39 0 1 115 1 115 4.62e-54 176
Msa1448930 MtrunA17_Chr7g0254411 62.712 118 44 0 1 118 1 118 1.73e-53 176
Msa1448930 MtrunA17_Chr5g0410961 65.217 115 40 0 1 115 1 115 6.24e-53 174
Msa1448930 MtrunA17_Chr3g0110351 62.712 118 44 0 1 118 1 118 3.97e-52 171
Msa1448930 MtrunA17_Chr7g0228891 54.605 152 56 1 1 139 1 152 5.02e-52 170
Msa1448930 MtrunA17_Chr5g0434571 62.712 118 44 0 1 118 37 154 9.23e-52 172
Msa1448930 MtrunA17_Chr5g0395281 63.478 115 42 0 1 115 1 115 2.24e-51 169
Msa1448930 MtrunA17_Chr1g0151941 62.931 116 42 1 1 115 1 116 7.35e-51 166
Msa1448930 MtrunA17_Chr4g0057031 62.609 115 43 0 1 115 1 115 8.46e-51 167
Msa1448930 MtrunA17_Chr4g0055981 63.478 115 42 0 8 122 51 165 1.06e-50 165
Msa1448930 MtrunA17_Chr3g0135311 52.055 146 65 2 1 141 1 146 3.13e-50 167
Msa1448930 MtrunA17_Chr5g0400821 56.923 130 55 1 1 129 1 130 5.06e-50 166
Msa1448930 MtrunA17_Chr4g0044421 62.712 118 43 1 3 119 2 119 6.37e-50 162
Msa1448930 MtrunA17_Chr4g0022931 60.484 124 48 1 1 123 1 124 1.02e-49 164
Msa1448930 MtrunA17_Chr6g0452271 61.017 118 46 0 1 118 1 118 1.08e-49 166
Msa1448930 MtrunA17_Chr6g0453211 60.360 111 44 0 1 111 1 111 4.26e-49 164
Msa1448930 MtrunA17_Chr2g0311221 61.818 110 42 0 2 111 4 113 4.63e-49 164
Msa1448930 MtrunA17_Chr4g0028311 62.069 116 43 1 1 115 1 116 1.24e-48 162
Msa1448930 MtrunA17_Chr1g0152011 54.545 132 55 2 1 127 1 132 2.06e-48 162
Msa1448930 MtrunA17_Chr2g0323351 51.613 155 71 1 1 155 1 151 2.38e-48 160
Msa1448930 MtrunA17_Chr3g0103281 60.870 115 45 0 1 115 1 115 3.34e-48 162
Msa1448930 MtrunA17_Chr8g0343831 62.963 108 40 0 12 119 8 115 4.42e-48 159
Msa1448930 MtrunA17_Chr7g0264641 58.621 116 47 1 1 115 1 116 5.18e-48 159
Msa1448930 MtrunA17_Chr4g0022901 62.069 116 43 1 1 115 1 116 6.02e-48 159
Msa1448930 MtrunA17_Chr4g0022891 40.887 203 115 3 1 200 1 201 8.42e-48 158
Msa1448930 MtrunA17_Chr8g0387421 58.475 118 49 0 1 118 1 118 1.04e-47 160
Msa1448930 MtrunA17_Chr2g0327351 61.261 111 42 1 1 110 1 111 1.38e-47 160
Msa1448930 MtrunA17_Chr4g0054391 57.364 129 54 1 1 128 1 129 1.62e-47 159
Msa1448930 MtrunA17_Chr4g0022911 59.483 116 46 1 1 115 1 116 2.54e-47 158
Msa1448930 MtrunA17_Chr1g0193371 55.000 140 60 2 1 139 1 138 4.26e-47 160
Msa1448930 MtrunA17_Chr7g0270891 59.664 119 48 0 1 119 1 119 4.78e-47 160
Msa1448930 MtrunA17_Chr4g0072751 54.887 133 59 1 1 132 1 133 1.04e-46 158
Msa1448930 MtrunA17_Chr1g0193801 57.983 119 50 0 1 119 1 119 1.48e-46 159
Msa1448930 MtrunA17_Chr6g0487491 49.686 159 66 4 1 147 1 157 1.68e-46 155
Msa1448930 MtrunA17_Chr5g0397231 60.000 110 44 0 1 110 1 110 1.89e-46 157
Msa1448930 MtrunA17_Chr1g0209661 61.017 118 46 0 12 129 27 144 4.30e-46 156
Msa1448930 MtrunA17_Chr6g0450101 57.812 128 52 1 1 126 1 128 5.81e-46 152
Msa1448930 MtrunA17_Chr7g0220341 47.619 168 71 4 10 175 23 175 6.63e-46 154
Msa1448930 MtrunA17_Chr2g0330041 57.391 115 49 0 1 115 1 115 8.85e-46 157
Msa1448930 MtrunA17_Chr4g0058631 57.983 119 50 0 1 119 1 119 1.28e-45 156
Msa1448930 MtrunA17_Chr7g0240821 60.714 112 44 0 16 127 5 116 1.83e-45 152
Msa1448930 MtrunA17_Chr3g0117091 47.531 162 76 3 1 154 1 161 2.92e-45 154
Msa1448930 MtrunA17_Chr7g0228231 63.303 109 40 0 12 120 14 122 3.31e-45 150
Msa1448930 MtrunA17_Chr4g0022881 58.120 117 49 0 1 117 1 117 4.24e-45 151
Msa1448930 MtrunA17_Chr8g0342541 57.391 115 49 0 1 115 1 115 8.27e-45 153
Msa1448930 MtrunA17_Chr1g0168661 63.462 104 38 0 14 117 23 126 8.35e-45 151
Msa1448930 MtrunA17_Chr1g0211161 48.077 156 74 2 3 151 4 159 1.32e-44 149
Msa1448930 MtrunA17_Chr1g0186061 63.462 104 38 0 14 117 22 125 1.86e-44 150
Msa1448930 MtrunA17_Chr2g0309911 59.091 110 45 0 6 115 5 114 2.20e-44 151
Msa1448930 MtrunA17_Chr7g0271241 61.468 109 42 0 1 109 1 109 3.02e-44 153
Msa1448930 MtrunA17_Chr8g0342521 57.391 115 49 0 1 115 1 115 3.26e-44 152
Msa1448930 MtrunA17_Chr1g0194291 60.360 111 44 0 8 118 17 127 9.49e-44 148
Msa1448930 MtrunA17_Chr5g0434931 45.652 184 83 5 11 192 34 202 3.09e-43 147
Msa1448930 MtrunA17_Chr2g0294811 63.043 92 34 0 1 92 1 92 8.01e-43 141
Msa1448930 MtrunA17_Chr5g0434911 58.716 109 45 0 7 115 16 124 1.20e-42 146
Msa1448930 MtrunA17_Chr5g0417821 59.434 106 43 0 10 115 5 110 1.45e-42 146
Msa1448930 MtrunA17_Chr8g0342481 56.034 116 50 1 1 115 1 116 2.41e-42 148
Msa1448930 MtrunA17_Chr5g0434831 61.905 105 40 0 11 115 6 110 2.62e-42 142
Msa1448930 MtrunA17_Chr8g0360111 60.194 103 41 0 11 113 24 126 3.91e-42 144
Msa1448930 MtrunA17_Chr1g0194301 48.630 146 65 2 12 157 33 168 6.76e-42 144
Msa1448930 MtrunA17_Chr3g0088461 57.273 110 47 0 8 117 18 127 1.27e-41 145
Msa1448930 MtrunA17_Chr3g0080861 57.407 108 46 0 10 117 35 142 1.40e-41 148
Msa1448930 MtrunA17_Chr7g0228991 60.952 105 41 0 11 115 28 132 1.62e-41 143
Msa1448930 MtrunA17_Chr4g0032401 57.547 106 45 0 12 117 17 122 7.14e-41 143
Msa1448930 MtrunA17_Chr6g0470971 42.604 169 86 3 14 173 16 182 8.57e-41 141
Msa1448930 MtrunA17_Chr2g0328771 57.547 106 45 0 12 117 20 125 9.56e-41 142
Msa1448930 MtrunA17_Chr8g0354661 55.556 108 48 0 10 117 35 142 2.29e-40 145
Msa1448930 MtrunA17_Chr4g0068921 54.930 142 54 2 12 153 24 155 1.00e-39 136
Msa1448930 MtrunA17_Chr5g0434841 59.048 105 43 0 11 115 19 123 1.13e-39 139
Msa1448930 MtrunA17_Chr2g0293911 61.864 118 43 1 9 126 21 136 1.89e-39 139
Msa1448930 MtrunA17_Chr3g0099131 52.294 109 52 0 10 118 39 147 3.87e-39 142
Msa1448930 MtrunA17_Chr2g0322521 51.818 110 53 0 8 117 25 134 5.68e-39 139
Msa1448930 MtrunA17_Chr1g0203441 52.941 119 55 1 1 118 1 119 2.17e-38 135
Msa1448930 MtrunA17_Chr1g0154031 54.717 106 48 0 12 117 76 181 4.58e-38 137
Msa1448930 MtrunA17_Chr4g0030881 53.043 115 47 1 14 121 9 123 9.08e-38 133
Msa1448930 MtrunA17_Chr2g0327821 52.727 110 52 0 12 121 6 115 1.33e-37 132
Msa1448930 MtrunA17_Chr7g0247131 71.622 74 21 0 44 117 10 83 1.43e-36 130
Msa1448930 MtrunA17_Chr1g0192411 51.852 108 52 0 10 117 10 117 1.54e-36 133
Msa1448930 MtrunA17_Chr4g0042611 60.227 88 35 0 1 88 1 88 4.11e-36 123
Msa1448930 MtrunA17_Chr1g0180391 55.046 109 49 0 12 120 19 127 1.26e-35 126
Msa1448930 MtrunA17_Chr5g0395221 60.227 88 35 0 1 88 1 88 2.86e-34 118
Msa1448930 MtrunA17_Chr2g0323321 56.522 92 39 1 1 92 1 91 4.80e-32 113
Msa1448930 MtrunA17_Chr8g0342511 56.322 87 38 0 1 87 1 87 1.77e-31 111
Msa1448930 MtrunA17_Chr7g0229101 71.014 69 20 0 44 112 4 72 3.06e-30 112
Msa1448930 MtrunA17_Chr8g0342531 44.828 116 59 1 1 111 1 116 3.60e-30 110
Msa1448930 MtrunA17_Chr5g0440781 46.939 98 51 1 14 110 14 111 3.86e-30 111
Msa1448930 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 7.69e-30 108
Msa1448930 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 1.99e-29 107
Msa1448930 MtrunA17_Chr5g0440761 45.714 105 56 1 14 117 14 118 2.94e-29 110
Msa1448930 MtrunA17_Chr5g0441141 45.714 105 56 1 14 117 14 118 3.63e-29 110
Msa1448930 MtrunA17_Chr6g0454921 47.170 106 47 2 14 115 15 115 1.99e-28 107
Msa1448930 MtrunA17_Chr4g0053431 38.365 159 82 3 14 157 5 162 2.45e-28 108
Msa1448930 MtrunA17_Chr5g0441131 42.478 113 64 1 6 117 3 115 3.10e-28 106
Msa1448930 MtrunA17_Chr3g0099141 49.398 83 42 0 12 94 40 122 5.81e-28 103
Msa1448930 MtrunA17_Chr7g0229131 47.788 113 47 2 44 149 4 111 8.09e-28 104
Msa1448930 MtrunA17_Chr5g0401731 48.113 106 46 2 14 115 15 115 1.09e-27 108
Msa1448930 MtrunA17_Chr4g0013361 37.681 138 72 2 12 135 10 147 1.72e-27 107
Msa1448930 MtrunA17_Chr4g0008551 49.020 102 51 1 14 115 38 138 2.67e-27 107
Msa1448930 MtrunA17_Chr5g0434901 67.692 65 21 0 48 112 9 73 3.13e-27 101
Msa1448930 MtrunA17_Chr5g0429661 36.095 169 96 5 12 175 120 281 3.36e-27 107
Msa1448930 MtrunA17_Chr8g0334881 43.000 100 56 1 12 110 10 109 3.41e-26 103
Msa1448930 MtrunA17_Chr3g0133601 46.078 102 54 1 14 115 37 137 5.54e-26 101
Msa1448930 MtrunA17_Chr7g0228531 32.328 232 125 8 10 235 216 421 2.20e-25 103
Msa1448930 MtrunA17_Chr3g0117511 35.484 186 96 6 9 183 178 350 2.26e-25 103
Msa1448930 MtrunA17_Chr4g0058991 47.573 103 51 2 9 110 204 304 8.43e-25 102
Msa1448930 MtrunA17_Chr7g0238631 47.115 104 54 1 12 115 111 213 1.11e-23 99.4
Msa1448930 MtrunA17_Chr7g0238631 33.962 106 68 2 14 118 61 165 5.24e-11 62.4
Msa1448930 MtrunA17_Chr5g0437321 38.017 121 74 1 14 134 19 138 3.57e-23 95.1
Msa1448930 MtrunA17_Chr6g0480581 38.889 108 65 1 14 121 4 110 5.86e-23 93.6
Msa1448930 MtrunA17_Chr5g0425591 42.529 87 49 1 8 93 5 91 5.82e-22 87.0
Msa1448930 MtrunA17_Chr5g0417621 35.433 127 76 2 2 128 127 247 1.25e-21 92.8
Msa1448930 MtrunA17_Chr6g0460671 33.088 136 90 1 14 149 99 233 1.78e-21 91.7
Msa1448930 MtrunA17_Chr6g0460661 38.462 104 61 2 17 120 19 119 2.89e-21 87.4
Msa1448930 MtrunA17_Chr4g0042501 36.522 115 72 1 14 128 105 218 3.53e-21 91.7
Msa1448930 MtrunA17_Chr1g0157731 39.423 104 62 1 12 115 89 191 9.97e-21 91.3
Msa1448930 MtrunA17_Chr3g0125801 40.741 108 63 1 14 121 16 122 1.03e-20 88.6
Msa1448930 MtrunA17_Chr3g0093811 54.167 72 33 0 44 115 14 85 1.07e-20 88.2
Msa1448930 MtrunA17_Chr3g0139671 39.423 104 62 1 12 115 83 185 1.13e-20 90.9
Msa1448930 MtrunA17_Chr7g0238651 37.391 115 68 2 17 129 10 122 2.44e-20 88.6
Msa1448930 MtrunA17_Chr6g0453751 45.652 92 41 3 11 93 19 110 5.47e-20 83.2
Msa1448930 MtrunA17_Chr7g0228481 30.603 232 129 8 10 235 216 421 7.70e-20 87.8
Msa1448930 MtrunA17_Chr1g0177901 36.220 127 77 2 24 147 4 129 1.31e-19 84.0
Msa1448930 MtrunA17_Chr7g0228401 30.392 204 119 6 25 219 290 479 1.38e-19 87.4
Msa1448930 MtrunA17_Chr7g0254261 35.294 119 71 2 1 119 81 193 2.96e-18 82.8
Msa1448930 MtrunA17_Chr5g0397841 43.011 93 52 1 17 109 113 204 8.01e-18 82.0
Msa1448930 MtrunA17_Chr5g0416341 34.848 132 80 3 13 144 25 150 2.11e-17 80.9
Msa1448930 MtrunA17_Chr7g0233061 36.667 120 59 4 14 127 180 288 2.83e-17 80.1
Msa1448930 MtrunA17_Chr8g0362231 31.410 156 100 3 13 168 21 169 5.41e-17 79.7
Msa1448930 MtrunA17_Chr5g0434871 69.048 42 13 0 74 115 2 43 4.64e-16 70.9
Msa1448930 MtrunA17_Chr7g0247141 58.333 48 19 1 1 47 1 48 1.63e-15 68.9
Msa1448930 MtrunA17_Chr5g0434891 59.259 54 17 1 77 125 1 54 9.07e-15 69.3
Msa1448930 MtrunA17_Chr1g0193901 48.077 52 27 0 17 68 17 68 1.95e-14 67.8
Msa1448930 MtrunA17_Chr1g0193891 48.077 52 27 0 17 68 17 68 1.95e-14 67.8
Msa1448930 MtrunA17_Chr1g0193871 48.077 52 27 0 17 68 17 68 1.95e-14 67.8
Msa1448930 MtrunA17_Chr1g0193881 48.077 52 27 0 17 68 17 68 1.95e-14 67.8
Msa1448930 MtrunA17_Chr2g0322831 66.667 39 13 0 70 108 34 72 7.72e-14 65.1
Msa1448930 MtrunA17_Chr2g0288361 50.000 44 22 0 70 113 29 72 6.12e-12 60.1
Msa1448930 MtrunA17_Chr4g0024181 56.098 41 18 0 70 110 28 68 4.85e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448930 AT5G49330.1 74.783 115 29 0 1 115 1 115 5.84e-63 201
Msa1448930 AT3G13540.1 48.095 210 87 4 4 207 15 208 9.58e-63 197
Msa1448930 AT4G38620.1 55.747 174 60 3 1 173 1 158 9.81e-63 198
Msa1448930 AT2G47460.1 59.119 159 52 2 1 155 1 150 1.94e-62 200
Msa1448930 AT4G09460.1 47.500 200 92 2 1 194 1 193 4.30e-62 195
Msa1448930 AT1G22640.1 66.667 129 43 0 1 129 1 129 5.23e-62 195
Msa1448930 AT1G06180.1 62.222 135 51 0 1 135 1 135 1.04e-61 194
Msa1448930 AT2G16720.1 70.435 115 34 0 1 115 1 115 2.82e-60 191
Msa1448930 AT3G62610.1 72.174 115 32 0 1 115 1 115 1.87e-59 191
Msa1448930 AT3G23250.1 66.667 120 40 0 1 120 1 120 1.90e-59 190
Msa1448930 AT4G34990.1 65.217 138 47 1 1 137 1 138 2.25e-59 189
Msa1448930 AT5G16770.4 71.304 115 33 0 1 115 1 115 1.34e-58 189
Msa1448930 AT5G16770.3 71.304 115 33 0 1 115 1 115 1.34e-58 189
Msa1448930 AT1G35515.1 51.381 181 79 2 1 179 1 174 1.82e-58 185
Msa1448930 AT5G16770.1 71.304 115 33 0 1 115 1 115 2.77e-58 188
Msa1448930 AT5G16770.2 71.304 115 33 0 1 115 1 115 2.77e-58 188
Msa1448930 AT3G02940.2 69.565 115 35 0 1 115 1 115 7.19e-58 186
Msa1448930 AT2G31180.1 66.102 118 40 0 1 118 1 118 7.42e-58 184
Msa1448930 AT4G21440.1 68.696 115 36 0 1 115 1 115 1.64e-57 187
Msa1448930 AT3G02940.1 69.565 115 35 0 1 115 1 115 1.65e-57 186
Msa1448930 AT3G02940.3 69.565 115 35 0 1 115 1 115 1.65e-57 186
Msa1448930 AT5G15310.4 43.750 224 102 3 1 200 1 224 1.80e-57 183
Msa1448930 AT3G61250.1 66.087 115 39 0 1 115 1 115 1.02e-56 183
Msa1448930 AT4G28110.1 66.087 115 39 0 1 115 1 115 4.18e-56 181
Msa1448930 AT3G01140.2 49.425 174 84 1 1 170 1 174 1.20e-55 182
Msa1448930 AT5G35550.1 47.115 208 96 4 12 215 14 211 2.91e-55 178
Msa1448930 AT5G15310.1 66.957 115 38 0 1 115 1 115 4.25e-55 180
Msa1448930 AT1G08810.1 55.634 142 62 1 1 142 1 141 4.40e-55 178
Msa1448930 AT5G15310.2 66.957 115 38 0 1 115 1 115 5.97e-55 179
Msa1448930 AT4G05100.1 67.241 116 37 1 1 115 1 116 1.19e-54 179
Msa1448930 AT5G60890.1 59.574 141 51 2 1 141 1 135 1.39e-54 177
Msa1448930 AT3G47600.1 61.290 124 48 0 1 124 1 124 1.19e-53 176
Msa1448930 AT5G62470.2 55.396 139 62 0 1 139 1 139 2.61e-53 176
Msa1448930 AT5G10280.1 64.348 115 41 0 1 115 1 115 3.61e-53 175
Msa1448930 AT1G16490.1 63.158 114 42 0 2 115 4 117 8.75e-53 172
Msa1448930 AT1G74650.1 63.478 115 42 0 1 115 1 115 1.53e-52 173
Msa1448930 AT1G56160.1 64.912 114 40 0 2 115 4 117 1.69e-52 172
Msa1448930 AT1G34670.1 65.217 115 40 0 1 115 1 115 2.17e-52 174
Msa1448930 AT3G01140.1 48.538 171 84 1 4 170 47 217 2.24e-52 174
Msa1448930 AT4G17785.2 66.379 116 38 1 1 115 1 116 4.46e-52 172
Msa1448930 AT5G62470.1 55.396 139 61 1 1 139 1 138 5.44e-52 172
Msa1448930 AT4G17785.1 66.379 116 38 1 1 115 1 116 7.08e-52 172
Msa1448930 AT1G66370.1 40.323 248 134 4 1 238 1 244 1.22e-51 168
Msa1448930 AT1G66230.1 61.864 118 45 0 1 118 1 118 1.82e-51 169
Msa1448930 AT4G37780.1 60.163 123 48 1 1 122 1 123 2.00e-51 170
Msa1448930 AT1G79180.1 63.158 114 42 0 2 115 4 117 2.27e-51 169
Msa1448930 AT5G14750.1 57.812 128 51 1 14 138 18 145 2.74e-51 166
Msa1448930 AT3G28910.1 61.864 118 45 0 1 118 1 118 4.05e-51 169
Msa1448930 AT4G12350.1 62.609 115 43 0 1 115 1 115 1.40e-50 167
Msa1448930 AT5G65230.1 61.739 115 44 0 1 115 1 115 1.42e-50 167
Msa1448930 AT5G16600.1 61.864 118 45 0 1 118 1 118 3.44e-50 167
Msa1448930 AT1G18570.1 63.333 120 43 1 1 119 1 120 6.80e-50 167
Msa1448930 AT1G74080.1 61.345 119 46 0 1 119 1 119 7.69e-50 166
Msa1448930 AT5G14340.1 64.103 117 42 0 1 117 13 129 9.93e-50 164
Msa1448930 AT4G22680.1 61.739 115 44 0 1 115 1 115 1.11e-49 164
Msa1448930 AT5G07690.1 62.281 114 43 0 1 114 1 114 1.11e-49 166
Msa1448930 AT5G52600.1 60.000 120 48 0 12 131 12 131 1.36e-49 162
Msa1448930 AT5G61420.2 60.870 115 45 0 1 115 1 115 4.96e-49 165
Msa1448930 AT5G40330.1 64.706 102 36 0 14 115 14 115 1.31e-48 160
Msa1448930 AT1G63910.1 49.296 142 72 0 1 142 1 142 1.47e-48 164
Msa1448930 AT1G09540.1 60.317 126 48 1 1 126 1 124 1.74e-48 164
Msa1448930 AT5G65790.1 58.537 123 50 1 1 122 1 123 2.28e-48 164
Msa1448930 AT5G26660.1 47.486 179 85 2 1 179 1 170 2.57e-48 163
Msa1448930 AT5G56110.1 61.739 115 44 0 1 115 1 115 2.60e-48 162
Msa1448930 AT5G62320.1 46.316 190 90 4 2 183 3 188 3.82e-48 159
Msa1448930 AT3G49690.1 57.724 123 51 1 1 122 1 123 4.36e-48 161
Msa1448930 AT5G54230.1 61.739 115 44 0 1 115 1 115 4.42e-48 161
Msa1448930 AT1G57560.2 43.541 209 86 4 1 177 1 209 1.11e-47 159
Msa1448930 AT5G57620.1 54.615 130 58 1 1 129 1 130 2.56e-47 160
Msa1448930 AT3G12820.1 59.829 117 47 0 3 119 5 121 2.67e-47 157
Msa1448930 AT3G27920.1 63.725 102 37 0 14 115 16 117 3.53e-47 156
Msa1448930 AT1G57560.1 60.504 119 47 0 1 119 1 119 4.78e-47 159
Msa1448930 AT5G23000.1 60.345 116 45 1 1 115 1 116 6.15e-47 159
Msa1448930 AT4G01680.3 48.171 164 77 3 1 164 1 156 8.57e-47 156
Msa1448930 AT5G07700.1 59.130 115 47 0 1 115 1 115 9.87e-47 159
Msa1448930 AT5G07700.2 59.130 115 47 0 1 115 1 115 9.87e-47 159
Msa1448930 AT2G36890.1 60.345 116 45 1 1 115 1 116 1.07e-46 157
Msa1448930 AT3G13890.2 58.261 115 48 0 1 115 1 115 1.10e-46 159
Msa1448930 AT1G74430.1 59.664 119 48 0 1 119 1 119 1.12e-46 156
Msa1448930 AT2G36890.2 60.345 116 45 1 1 115 42 157 1.47e-46 158
Msa1448930 AT3G24310.1 59.504 121 47 1 11 129 17 137 2.42e-46 155
Msa1448930 AT4G01680.1 48.466 163 76 3 1 163 1 155 2.62e-46 157
Msa1448930 AT3G30210.1 46.386 166 82 3 11 175 26 185 6.60e-46 155
Msa1448930 AT1G56650.1 57.241 145 53 2 8 148 4 143 1.11e-45 153
Msa1448930 AT4G13480.1 65.385 104 36 0 14 117 8 111 2.29e-45 153
Msa1448930 AT3G27810.1 62.617 107 40 0 12 118 20 126 9.30e-45 150
Msa1448930 AT1G79180.2 48.980 147 42 1 2 115 4 150 1.13e-44 153
Msa1448930 AT2G32460.2 57.009 107 46 0 11 117 5 111 1.53e-44 156
Msa1448930 AT5G40350.1 65.049 103 36 0 12 114 17 119 1.73e-44 149
Msa1448930 AT5G12870.1 59.813 107 43 0 12 118 18 124 1.74e-44 151
Msa1448930 AT2G32460.1 57.009 107 46 0 11 117 17 123 1.96e-44 156
Msa1448930 AT3G28470.1 57.273 110 47 0 1 110 1 110 5.02e-44 151
Msa1448930 AT3G13890.1 54.032 124 48 1 1 115 1 124 1.41e-43 151
Msa1448930 AT1G66390.1 54.610 141 64 0 8 148 4 144 1.43e-43 148
Msa1448930 AT1G68320.1 49.660 147 63 1 12 147 19 165 1.78e-43 149
Msa1448930 AT3G01530.1 60.377 106 42 0 12 117 25 130 4.51e-43 145
Msa1448930 AT4G01680.2 45.143 175 76 4 1 163 1 167 5.58e-43 149
Msa1448930 AT1G66380.1 55.474 137 60 1 8 144 4 139 5.76e-43 142
Msa1448930 AT1G18710.1 53.782 119 55 0 1 119 1 119 8.55e-43 146
Msa1448930 AT3G08500.1 60.377 106 42 0 12 117 30 135 1.02e-42 148
Msa1448930 AT2G47190.1 58.491 106 44 0 12 117 20 125 1.38e-42 146
Msa1448930 AT1G25340.1 56.897 116 50 0 14 129 20 135 1.39e-42 146
Msa1448930 AT1G48000.1 61.111 108 42 0 10 117 30 137 4.65e-42 144
Msa1448930 AT3G12720.1 55.455 110 49 0 6 115 16 125 7.19e-42 145
Msa1448930 AT4G26930.1 55.046 109 49 0 10 118 17 125 3.78e-41 145
Msa1448930 AT3G11440.2 54.717 106 48 0 12 117 41 146 5.97e-40 144
Msa1448930 AT5G06100.1 53.271 107 50 0 11 117 31 137 8.57e-40 143
Msa1448930 AT5G35550.2 45.714 175 81 4 45 215 50 214 1.16e-39 138
Msa1448930 AT3G46130.1 54.054 111 51 0 11 121 8 118 1.68e-39 137
Msa1448930 AT3G06490.1 54.483 145 56 2 9 153 16 150 1.79e-39 139
Msa1448930 AT5G14750.3 62.745 102 32 2 40 138 13 111 2.30e-39 134
Msa1448930 AT5G59780.3 54.630 108 49 0 14 121 10 117 2.61e-39 136
Msa1448930 AT5G55020.1 55.238 105 47 0 10 114 24 128 2.90e-39 142
Msa1448930 AT3G11440.3 54.717 106 48 0 12 117 41 146 3.24e-39 143
Msa1448930 AT3G11440.4 54.717 106 48 0 12 117 41 146 3.24e-39 143
Msa1448930 AT3G11440.1 54.717 106 48 0 12 117 41 146 3.24e-39 143
Msa1448930 AT5G06100.5 53.271 107 50 0 11 117 31 137 3.80e-39 142
Msa1448930 AT5G06100.2 53.271 107 50 0 11 117 31 137 3.80e-39 142
Msa1448930 AT5G06100.3 53.271 107 50 0 11 117 31 137 3.80e-39 142
Msa1448930 AT5G06100.4 53.271 107 50 0 11 117 31 137 3.80e-39 142
Msa1448930 AT5G49620.1 51.656 151 63 2 9 159 23 163 1.73e-38 136
Msa1448930 AT1G25340.2 54.310 116 48 1 14 129 20 130 2.34e-38 135
Msa1448930 AT1G25340.3 54.310 116 48 1 14 129 20 130 3.80e-38 135
Msa1448930 AT3G53200.1 58.333 108 45 0 12 119 9 116 4.82e-38 133
Msa1448930 AT2G26960.1 51.376 109 53 0 9 117 17 125 1.38e-37 136
Msa1448930 AT4G25560.1 54.054 111 51 0 14 124 12 122 1.30e-36 130
Msa1448930 AT5G49620.2 47.273 165 63 3 9 159 23 177 7.48e-35 127
Msa1448930 AT3G48920.1 48.214 112 58 0 14 125 20 131 8.09e-34 123
Msa1448930 AT5G52260.1 48.760 121 62 0 14 134 14 134 4.92e-33 121
Msa1448930 AT5G26660.2 45.985 137 65 2 43 179 12 139 8.23e-32 119
Msa1448930 AT3G27810.2 67.568 74 24 0 45 118 4 77 8.99e-31 112
Msa1448930 AT3G46130.4 53.535 99 42 1 23 121 2 96 5.27e-30 112
Msa1448930 AT3G12820.2 65.753 73 25 0 47 119 1 73 5.56e-30 111
Msa1448930 AT5G59780.2 62.025 79 30 0 43 121 18 96 7.17e-30 111
Msa1448930 AT5G40350.2 70.000 70 21 0 45 114 5 74 1.16e-29 109
Msa1448930 AT3G46130.3 61.538 78 30 0 44 121 9 86 1.24e-29 111
Msa1448930 AT3G53200.2 63.636 77 28 0 43 119 7 83 1.80e-29 110
Msa1448930 AT3G47600.2 63.750 80 29 0 45 124 39 118 1.86e-29 113
Msa1448930 AT1G22640.3 66.667 72 24 0 58 129 1 72 3.56e-29 109
Msa1448930 AT1G66380.3 57.426 101 42 1 44 144 7 106 3.62e-29 106
Msa1448930 AT2G26950.1 45.098 102 56 0 17 118 21 122 1.57e-28 111
Msa1448930 AT5G14750.4 58.333 84 32 1 58 138 1 84 1.88e-28 105
Msa1448930 AT5G14750.2 58.333 84 32 1 58 138 1 84 1.88e-28 105
Msa1448930 AT3G27785.1 36.601 153 96 1 9 161 184 335 5.69e-27 108
Msa1448930 AT3G55730.1 50.000 102 50 1 14 115 56 156 6.69e-26 104
Msa1448930 AT2G23290.1 49.020 102 51 1 14 115 13 113 1.37e-25 102
Msa1448930 AT3G60460.1 42.000 100 57 1 12 110 11 110 3.62e-25 101
Msa1448930 AT4G37260.1 47.059 102 53 1 14 115 13 113 5.38e-25 101
Msa1448930 AT2G39880.1 45.370 108 58 1 14 121 50 156 7.71e-25 101
Msa1448930 AT5G40360.1 40.541 111 65 1 14 124 158 267 1.06e-24 100
Msa1448930 AT1G71030.2 60.294 68 27 0 51 118 5 72 1.53e-24 96.7
Msa1448930 AT3G09230.1 44.340 106 50 2 14 115 55 155 2.20e-24 100
Msa1448930 AT1G71030.1 60.294 68 27 0 51 118 19 86 2.44e-24 96.7
Msa1448930 AT1G69560.1 36.220 127 80 1 8 134 101 226 2.73e-24 99.4
Msa1448930 AT5G11050.1 43.333 120 63 2 14 129 105 223 3.05e-24 100
Msa1448930 AT3G23250.2 65.079 63 22 0 58 120 1 63 3.07e-24 97.1
Msa1448930 AT1G69560.2 36.220 127 80 1 8 134 117 242 3.61e-24 99.4
Msa1448930 AT1G66380.2 55.294 85 38 0 8 92 4 88 3.64e-24 93.6
Msa1448930 AT4G18770.1 44.737 114 54 3 9 116 212 322 5.83e-24 99.8
Msa1448930 AT5G58850.1 41.463 123 67 2 8 126 99 220 9.05e-24 99.4
Msa1448930 AT1G18960.1 43.636 110 56 3 6 115 5 108 1.07e-23 97.4
Msa1448930 AT5G02320.1 44.444 108 51 2 12 115 125 227 1.65e-23 99.4
Msa1448930 AT5G02320.2 44.444 108 51 2 12 115 125 227 1.65e-23 99.4
Msa1448930 AT5G02320.3 44.444 108 51 2 12 115 65 167 1.91e-23 99.0
Msa1448930 AT3G09370.2 45.370 108 50 2 12 115 133 235 5.34e-23 97.8
Msa1448930 AT3G09370.1 45.370 108 50 2 12 115 128 230 5.84e-23 97.4
Msa1448930 AT3G09370.3 45.370 108 50 2 12 115 141 243 6.71e-23 97.4
Msa1448930 AT3G50060.1 42.157 102 58 1 14 115 6 106 7.43e-23 95.1
Msa1448930 AT1G17950.1 39.815 108 64 1 14 121 5 111 1.43e-22 93.2
Msa1448930 AT5G11510.3 42.308 104 59 1 12 115 79 181 5.31e-22 95.1
Msa1448930 AT5G11510.1 42.308 104 59 1 12 115 79 181 5.31e-22 95.1
Msa1448930 AT5G11510.4 42.308 104 59 1 12 115 79 181 5.31e-22 95.1
Msa1448930 AT1G26780.1 41.121 107 62 1 12 118 96 201 5.75e-22 92.4
Msa1448930 AT5G11510.5 42.308 104 59 1 12 115 79 181 6.74e-22 94.7
Msa1448930 AT5G67300.1 42.453 106 52 2 14 115 6 106 7.02e-22 92.4
Msa1448930 AT5G11510.2 42.308 104 59 1 12 115 79 181 7.28e-22 94.7
Msa1448930 AT1G26780.2 41.121 107 62 1 12 118 96 201 9.91e-22 92.8
Msa1448930 AT5G17800.1 38.655 119 67 2 4 122 88 200 1.99e-20 89.0
Msa1448930 AT1G73410.1 41.284 109 61 2 14 121 6 112 2.64e-20 87.0
Msa1448930 AT4G32730.5 38.462 104 63 1 12 115 85 187 5.05e-20 89.4
Msa1448930 AT4G32730.4 38.462 104 63 1 12 115 85 187 5.05e-20 89.4
Msa1448930 AT4G32730.3 38.462 104 63 1 12 115 85 187 5.05e-20 89.4
Msa1448930 AT4G32730.2 38.462 104 63 1 12 115 85 187 5.05e-20 89.4
Msa1448930 AT1G73410.2 41.284 109 61 2 14 121 6 112 5.16e-20 85.5
Msa1448930 AT4G32730.1 38.462 104 63 1 12 115 85 187 5.58e-20 89.4
Msa1448930 AT4G33450.1 36.842 114 66 2 5 118 15 122 1.30e-19 85.5
Msa1448930 AT2G37630.1 38.462 117 68 2 14 128 4 118 1.34e-19 87.0
Msa1448930 AT2G25230.1 39.216 102 61 1 9 110 21 121 2.20e-19 84.3
Msa1448930 AT3G29020.1 35.849 106 67 1 14 119 65 169 3.10e-19 84.0
Msa1448930 AT3G29020.2 35.849 106 67 1 14 119 67 171 6.24e-19 84.3
Msa1448930 AT2G02820.3 30.189 212 110 7 13 191 29 235 7.25e-19 84.7
Msa1448930 AT2G02820.1 30.189 212 110 7 13 191 29 235 1.96e-18 84.3
Msa1448930 AT2G02820.2 30.189 212 110 7 13 191 29 235 3.16e-18 84.0
Msa1448930 AT1G14350.2 36.842 114 71 1 13 126 24 136 9.80e-18 82.0
Msa1448930 AT1G14350.1 36.842 114 71 1 13 126 24 136 9.80e-18 82.0
Msa1448930 AT5G39700.1 37.037 108 66 2 13 119 54 160 2.04e-16 75.5
Msa1448930 AT4G00540.2 37.963 108 63 2 11 115 100 206 1.31e-15 75.9
Msa1448930 AT5G40430.1 34.167 120 75 3 9 128 49 164 2.04e-15 73.9
Msa1448930 AT4G00540.1 37.963 108 63 2 11 115 98 204 2.24e-15 75.5
Msa1448930 AT5G59780.1 57.692 52 22 0 70 121 1 52 2.48e-15 72.0
Msa1448930 AT3G46130.2 57.692 52 22 0 70 121 1 52 2.82e-15 72.4
Msa1448930 AT4G25560.2 58.182 55 23 0 70 124 2 56 1.40e-14 70.9
Msa1448930 AT4G01060.2 60.000 40 16 0 69 108 31 70 9.95e-13 62.4
Msa1448930 AT4G01060.1 60.000 40 16 0 69 108 34 73 1.03e-12 62.4
Msa1448930 AT4G01060.3 60.000 40 16 0 69 108 32 71 1.62e-12 61.6
Msa1448930 AT1G14350.3 31.250 160 92 4 56 197 23 182 4.78e-12 65.5
Msa1448930 AT1G14350.4 31.250 160 92 4 56 197 23 182 4.78e-12 65.5
Msa1448930 AT2G46410.1 60.000 40 16 0 69 108 37 76 6.04e-12 60.8
Msa1448930 AT3G28910.2 61.905 42 16 0 77 118 1 42 1.29e-11 63.2
Msa1448930 AT1G22640.2 64.286 42 15 0 88 129 16 57 1.40e-11 62.0
Msa1448930 AT5G53200.1 60.000 40 16 0 69 108 32 71 1.40e-11 60.1
Msa1448930 AT1G74650.3 64.103 39 14 0 77 115 1 39 1.91e-11 62.8
Msa1448930 AT2G30424.1 47.368 57 26 1 69 121 35 91 3.47e-11 58.9
Msa1448930 AT1G01380.1 58.974 39 16 0 70 108 34 72 7.78e-11 57.4

Find 56 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGAATGCATTCACTTAT+TGG 0.135589 tig0032353:-1062 Msa1448930:CDS
TCCATGAGCTTGAATATATT+TGG 0.157966 tig0032353:+1569 None:intergenic
AAAGTCTTCTTCACCCTTAC+AGG 0.210306 tig0032353:+855 None:intergenic
ATGTTTCCTCTCTTTATATC+TGG 0.242748 tig0032353:+1110 None:intergenic
TTGGAGTTTGGACATTTAAA+AGG 0.249203 tig0032353:-1765 Msa1448930:five_prime_UTR
TATTATTACTCACGCTAATA+AGG 0.252641 tig0032353:+554 None:intergenic
AAGGAGAACAAAGTTGTATA+TGG 0.265595 tig0032353:-1746 Msa1448930:five_prime_UTR
AGCTTGTATAAGCTATCTTT+TGG 0.282299 tig0032353:-1784 Msa1448930:five_prime_UTR
CTCTGAATCTTCTGGTACTT+TGG 0.290467 tig0032353:+905 None:intergenic
GTCTTCTTCTCTGAATCTTC+TGG 0.314257 tig0032353:+897 None:intergenic
TTCTTCACCCTTACAGGCTT+TGG 0.316400 tig0032353:+861 None:intergenic
CTGGTAATCTTCCCGCAATA+AGG 0.325587 tig0032353:+1027 None:intergenic
CTCCTTGTTGTTCAAAAGTT+GGG 0.343674 tig0032353:-1635 Msa1448930:CDS
ATAGCTTATACAAGCTCTTA+AGG 0.353829 tig0032353:+1791 None:intergenic
ATAATGAGATAAAGAATTAC+TGG 0.355857 tig0032353:-995 Msa1448930:CDS
TTCAAGGTACTATCAGTTCT+TGG 0.362962 tig0032353:+819 None:intergenic
AACAACAAGCCAAGCGGAAG+AGG 0.365593 tig0032353:-778 Msa1448930:CDS
GAGAGAGACAATGATGGGTT+TGG 0.365978 tig0032353:-732 Msa1448930:CDS
ACTCCTTGTTGTTCAAAAGT+TGG 0.384251 tig0032353:-1636 Msa1448930:CDS
ATGATAAGGTCATCTTCTTC+TGG 0.393173 tig0032353:+1083 None:intergenic
TTTATCTACCAAAGCCTGTA+AGG 0.398170 tig0032353:-869 Msa1448930:CDS
ATTCACTTATTGGTAATAGA+TGG 0.418745 tig0032353:-1052 Msa1448930:CDS
TGAGTTGTATTCCAAGTTCA+AGG 0.431861 tig0032353:+803 None:intergenic
ACCAAATATATTCAAGCTCA+TGG 0.438518 tig0032353:-1570 Msa1448930:CDS
TTTGCTCTCCCTCTTCCGCT+TGG 0.450178 tig0032353:+769 None:intergenic
CTTCTAACTACTAATAAAGA+TGG 0.451150 tig0032353:-1664 Msa1448930:exon
GTGAATGCATTCTCATGATA+AGG 0.457005 tig0032353:+1069 None:intergenic
GATGACATGGAATGCCAATC+TGG 0.458733 tig0032353:-666 Msa1448930:CDS
TGGTAATCTTCCCGCAATAA+GGG 0.465384 tig0032353:+1028 None:intergenic
AACTGATAGTACCTTGAACT+TGG 0.466248 tig0032353:-814 Msa1448930:CDS
AGGCTTTGGTAGATAAACTA+AGG 0.484404 tig0032353:+875 None:intergenic
AGACACTTAAAATTTGAAGC+AGG 0.489795 tig0032353:+1690 None:intergenic
AGGAGAACAAAGTTGTATAT+GGG 0.503638 tig0032353:-1745 Msa1448930:five_prime_UTR
CTTATTGCGGGAAGATTACC+AGG 0.506861 tig0032353:-1026 Msa1448930:CDS
AATAGATGGTCCCTTATTGC+GGG 0.508874 tig0032353:-1038 Msa1448930:CDS
ATCTCATTATCTGTACGTCC+TGG 0.523825 tig0032353:+1008 None:intergenic
ACAACAAGCCAAGCGGAAGA+GGG 0.532451 tig0032353:-777 Msa1448930:CDS
ACAAAAGAGAGAGACAATGA+TGG 0.536178 tig0032353:-738 Msa1448930:CDS
TAATAGATGGTCCCTTATTG+CGG 0.544581 tig0032353:-1039 Msa1448930:CDS
GGAACAGTACCATGCAGACT+TGG 0.548293 tig0032353:-697 Msa1448930:CDS
TCTTCTCAAGAAAACCAGAT+TGG 0.548395 tig0032353:+652 None:intergenic
TATATTCAAGCTCATGGAGA+AGG 0.548578 tig0032353:-1564 Msa1448930:CDS
TTCTAACTACTAATAAAGAT+GGG 0.558595 tig0032353:-1663 Msa1448930:exon
GCATCTTCACGTGAAGTCCA+TGG 0.559783 tig0032353:+1600 None:intergenic
AAGCTCATGGAGAAGGCCAA+TGG 0.567347 tig0032353:-1557 Msa1448930:CDS
CTTGGTCAACAATGATGACA+TGG 0.569109 tig0032353:-679 Msa1448930:CDS
TGGGTTTGGATTGTTGTTTG+AGG 0.571835 tig0032353:-718 Msa1448930:CDS
TCAAAAGTTGGGTTGCATAG+AGG 0.572944 tig0032353:-1624 Msa1448930:CDS
TTATCTACCAAAGCCTGTAA+GGG 0.582095 tig0032353:-868 Msa1448930:CDS
CATTGTTGACCAAGTCTGCA+TGG 0.585314 tig0032353:+688 None:intergenic
TTGGGTTGCATAGAGGTCCA+TGG 0.594780 tig0032353:-1617 Msa1448930:CDS
TAAGGATAATGACATGATGA+TGG 0.597325 tig0032353:+1809 None:intergenic
CAAAAGAGAGAGACAATGAT+GGG 0.597587 tig0032353:-737 Msa1448930:CDS
CTAAGACCAGATATAAAGAG+AGG 0.606370 tig0032353:-1116 Msa1448930:CDS
CTCAGCAACAACAAGCCAAG+CGG 0.628358 tig0032353:-784 Msa1448930:CDS
GATGCAGGGCTTCTTAGATG+TGG 0.659065 tig0032353:-1170 Msa1448930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTAACTACTAATAAAGAT+GGG - tig0032353:721-740 Msa1448930:CDS 20.0%
!! ATAATGAGATAAAGAATTAC+TGG - tig0032353:1389-1408 Msa1448930:intron 20.0%
!! TTCTAACTACTAATAAAGAT+GGG - tig0032353:721-740 Msa1448930:CDS 20.0%
!! ATAATGAGATAAAGAATTAC+TGG - tig0032353:1389-1408 Msa1448930:intron 20.0%
! CTTCTAACTACTAATAAAGA+TGG - tig0032353:720-739 Msa1448930:CDS 25.0%
!! ATTAAATTACCAGCTCTTTT+TGG + tig0032353:862-881 None:intergenic 25.0%
! TCGTTTGCTCAAATTATTAT+TGG - tig0032353:996-1015 Msa1448930:CDS 25.0%
! AAAAATGATGTAATGAAGGA+CGG + tig0032353:1063-1082 None:intergenic 25.0%
!!! TCCTTCATTACATCATTTTT+TGG - tig0032353:1063-1082 Msa1448930:CDS 25.0%
! TCCAAAAAATGATGTAATGA+AGG + tig0032353:1067-1086 None:intergenic 25.0%
!! TTTTCTATGTCACTAATGTT+TGG - tig0032353:1127-1146 Msa1448930:CDS 25.0%
!! ATTCACTTATTGGTAATAGA+TGG - tig0032353:1332-1351 Msa1448930:intron 25.0%
!! AATACTAGATTCTTCTTTTG+CGG - tig0032353:1804-1823 Msa1448930:five_prime_UTR 25.0%
! CTTCTAACTACTAATAAAGA+TGG - tig0032353:720-739 Msa1448930:CDS 25.0%
!! ATTAAATTACCAGCTCTTTT+TGG + tig0032353:862-881 None:intergenic 25.0%
! TCGTTTGCTCAAATTATTAT+TGG - tig0032353:996-1015 Msa1448930:CDS 25.0%
! AAAAATGATGTAATGAAGGA+CGG + tig0032353:1063-1082 None:intergenic 25.0%
!!! TCCTTCATTACATCATTTTT+TGG - tig0032353:1063-1082 Msa1448930:CDS 25.0%
! TCCAAAAAATGATGTAATGA+AGG + tig0032353:1067-1086 None:intergenic 25.0%
!! TTTTCTATGTCACTAATGTT+TGG - tig0032353:1127-1146 Msa1448930:CDS 25.0%
!! ATTCACTTATTGGTAATAGA+TGG - tig0032353:1332-1351 Msa1448930:intron 25.0%
!! AATACTAGATTCTTCTTTTG+CGG - tig0032353:1804-1823 Msa1448930:five_prime_UTR 25.0%
TAAGGATAATGACATGATGA+TGG + tig0032353:578-597 None:intergenic 30.0%
ATAGCTTATACAAGCTCTTA+AGG + tig0032353:596-615 None:intergenic 30.0%
! AGCTTGTATAAGCTATCTTT+TGG - tig0032353:600-619 Msa1448930:CDS 30.0%
!!! ATAAGCTATCTTTTGGAGTT+TGG - tig0032353:607-626 Msa1448930:CDS 30.0%
TTGGAGTTTGGACATTTAAA+AGG - tig0032353:619-638 Msa1448930:CDS 30.0%
AAGGAGAACAAAGTTGTATA+TGG - tig0032353:638-657 Msa1448930:CDS 30.0%
AGGAGAACAAAGTTGTATAT+GGG - tig0032353:639-658 Msa1448930:CDS 30.0%
! AGACACTTAAAATTTGAAGC+AGG + tig0032353:697-716 None:intergenic 30.0%
ACCAAATATATTCAAGCTCA+TGG - tig0032353:814-833 Msa1448930:CDS 30.0%
TCCATGAGCTTGAATATATT+TGG + tig0032353:818-837 None:intergenic 30.0%
ATGTTTCCTCTCTTTATATC+TGG + tig0032353:1277-1296 None:intergenic 30.0%
ATGAGAATGCATTCACTTAT+TGG - tig0032353:1322-1341 Msa1448930:intron 30.0%
TAAGGATAATGACATGATGA+TGG + tig0032353:578-597 None:intergenic 30.0%
ATAGCTTATACAAGCTCTTA+AGG + tig0032353:596-615 None:intergenic 30.0%
! AGCTTGTATAAGCTATCTTT+TGG - tig0032353:600-619 Msa1448930:CDS 30.0%
!!! ATAAGCTATCTTTTGGAGTT+TGG - tig0032353:607-626 Msa1448930:CDS 30.0%
TTGGAGTTTGGACATTTAAA+AGG - tig0032353:619-638 Msa1448930:CDS 30.0%
AAGGAGAACAAAGTTGTATA+TGG - tig0032353:638-657 Msa1448930:CDS 30.0%
AGGAGAACAAAGTTGTATAT+GGG - tig0032353:639-658 Msa1448930:CDS 30.0%
! AGACACTTAAAATTTGAAGC+AGG + tig0032353:697-716 None:intergenic 30.0%
ACCAAATATATTCAAGCTCA+TGG - tig0032353:814-833 Msa1448930:CDS 30.0%
TCCATGAGCTTGAATATATT+TGG + tig0032353:818-837 None:intergenic 30.0%
ATGTTTCCTCTCTTTATATC+TGG + tig0032353:1277-1296 None:intergenic 30.0%
ATGAGAATGCATTCACTTAT+TGG - tig0032353:1322-1341 Msa1448930:intron 30.0%
!! ACTCCTTGTTGTTCAAAAGT+TGG - tig0032353:748-767 Msa1448930:CDS 35.0%
!! CTCCTTGTTGTTCAAAAGTT+GGG - tig0032353:749-768 Msa1448930:CDS 35.0%
! AACCCAACTTTTGAACAACA+AGG + tig0032353:754-773 None:intergenic 35.0%
TATATTCAAGCTCATGGAGA+AGG - tig0032353:820-839 Msa1448930:CDS 35.0%
!! TTTTTGGAAGTGATCTCCAT+TGG + tig0032353:846-865 None:intergenic 35.0%
AGATATAAGTGTCAAGACAC+AGG + tig0032353:957-976 None:intergenic 35.0%
TTACAGGAGATAAAGGATCT+AGG + tig0032353:1154-1173 None:intergenic 35.0%
CTAAGTCTTACAGGAGATAA+AGG + tig0032353:1161-1180 None:intergenic 35.0%
GAAAAAGTTGCAGACTAAGA+TGG - tig0032353:1236-1255 Msa1448930:intron 35.0%
CTAAGACCAGATATAAAGAG+AGG - tig0032353:1268-1287 Msa1448930:intron 35.0%
ATGATAAGGTCATCTTCTTC+TGG + tig0032353:1304-1323 None:intergenic 35.0%
GTGAATGCATTCTCATGATA+AGG + tig0032353:1318-1337 None:intergenic 35.0%
TAATAGATGGTCCCTTATTG+CGG - tig0032353:1345-1364 Msa1448930:intron 35.0%
! AGGCTTTGGTAGATAAACTA+AGG + tig0032353:1512-1531 None:intergenic 35.0%
TTTATCTACCAAAGCCTGTA+AGG - tig0032353:1515-1534 Msa1448930:intron 35.0%
TTATCTACCAAAGCCTGTAA+GGG - tig0032353:1516-1535 Msa1448930:intron 35.0%
! TTCAAGGTACTATCAGTTCT+TGG + tig0032353:1568-1587 None:intergenic 35.0%
AACTGATAGTACCTTGAACT+TGG - tig0032353:1570-1589 Msa1448930:CDS 35.0%
TGAGTTGTATTCCAAGTTCA+AGG + tig0032353:1584-1603 None:intergenic 35.0%
ACAAAAGAGAGAGACAATGA+TGG - tig0032353:1646-1665 Msa1448930:CDS 35.0%
CAAAAGAGAGAGACAATGAT+GGG - tig0032353:1647-1666 Msa1448930:CDS 35.0%
TCTTCTCAAGAAAACCAGAT+TGG + tig0032353:1735-1754 None:intergenic 35.0%
!! ACTCCTTGTTGTTCAAAAGT+TGG - tig0032353:748-767 Msa1448930:CDS 35.0%
!! CTCCTTGTTGTTCAAAAGTT+GGG - tig0032353:749-768 Msa1448930:CDS 35.0%
! AACCCAACTTTTGAACAACA+AGG + tig0032353:754-773 None:intergenic 35.0%
TATATTCAAGCTCATGGAGA+AGG - tig0032353:820-839 Msa1448930:CDS 35.0%
!! TTTTTGGAAGTGATCTCCAT+TGG + tig0032353:846-865 None:intergenic 35.0%
AGATATAAGTGTCAAGACAC+AGG + tig0032353:957-976 None:intergenic 35.0%
TTACAGGAGATAAAGGATCT+AGG + tig0032353:1154-1173 None:intergenic 35.0%
CTAAGTCTTACAGGAGATAA+AGG + tig0032353:1161-1180 None:intergenic 35.0%
GAAAAAGTTGCAGACTAAGA+TGG - tig0032353:1236-1255 Msa1448930:intron 35.0%
CTAAGACCAGATATAAAGAG+AGG - tig0032353:1268-1287 Msa1448930:intron 35.0%
ATGATAAGGTCATCTTCTTC+TGG + tig0032353:1304-1323 None:intergenic 35.0%
GTGAATGCATTCTCATGATA+AGG + tig0032353:1318-1337 None:intergenic 35.0%
TAATAGATGGTCCCTTATTG+CGG - tig0032353:1345-1364 Msa1448930:intron 35.0%
! AGGCTTTGGTAGATAAACTA+AGG + tig0032353:1512-1531 None:intergenic 35.0%
TTTATCTACCAAAGCCTGTA+AGG - tig0032353:1515-1534 Msa1448930:intron 35.0%
TTATCTACCAAAGCCTGTAA+GGG - tig0032353:1516-1535 Msa1448930:intron 35.0%
! TTCAAGGTACTATCAGTTCT+TGG + tig0032353:1568-1587 None:intergenic 35.0%
AACTGATAGTACCTTGAACT+TGG - tig0032353:1570-1589 Msa1448930:CDS 35.0%
TGAGTTGTATTCCAAGTTCA+AGG + tig0032353:1584-1603 None:intergenic 35.0%
ACAAAAGAGAGAGACAATGA+TGG - tig0032353:1646-1665 Msa1448930:CDS 35.0%
CAAAAGAGAGAGACAATGAT+GGG - tig0032353:1647-1666 Msa1448930:CDS 35.0%
TCTTCTCAAGAAAACCAGAT+TGG + tig0032353:1735-1754 None:intergenic 35.0%
! TCAAAAGTTGGGTTGCATAG+AGG - tig0032353:760-779 Msa1448930:CDS 40.0%
AGATCACTTCCAAAAAGAGC+TGG - tig0032353:850-869 Msa1448930:CDS 40.0%
GTAAGGTTGCTAAGTCTTAC+AGG + tig0032353:1170-1189 None:intergenic 40.0%
AGCAACCTTACGTGAAAGAA+TGG - tig0032353:1179-1198 Msa1448930:intron 40.0%
GCAACCTTACGTGAAAGAAT+GGG - tig0032353:1180-1199 Msa1448930:intron 40.0%
AATAGATGGTCCCTTATTGC+GGG - tig0032353:1346-1365 Msa1448930:intron 40.0%
TGGTAATCTTCCCGCAATAA+GGG + tig0032353:1359-1378 None:intergenic 40.0%
ATCTCATTATCTGTACGTCC+TGG + tig0032353:1379-1398 None:intergenic 40.0%
CTCTGAATCTTCTGGTACTT+TGG + tig0032353:1482-1501 None:intergenic 40.0%
GTCTTCTTCTCTGAATCTTC+TGG + tig0032353:1490-1509 None:intergenic 40.0%
AAAGTCTTCTTCACCCTTAC+AGG + tig0032353:1532-1551 None:intergenic 40.0%
!! TGGGTTTGGATTGTTGTTTG+AGG - tig0032353:1666-1685 Msa1448930:exon 40.0%
CTTGGTCAACAATGATGACA+TGG - tig0032353:1705-1724 Msa1448930:five_prime_UTR 40.0%
! TCAAAAGTTGGGTTGCATAG+AGG - tig0032353:760-779 Msa1448930:CDS 40.0%
AGATCACTTCCAAAAAGAGC+TGG - tig0032353:850-869 Msa1448930:CDS 40.0%
GTAAGGTTGCTAAGTCTTAC+AGG + tig0032353:1170-1189 None:intergenic 40.0%
AGCAACCTTACGTGAAAGAA+TGG - tig0032353:1179-1198 Msa1448930:intron 40.0%
GCAACCTTACGTGAAAGAAT+GGG - tig0032353:1180-1199 Msa1448930:intron 40.0%
AATAGATGGTCCCTTATTGC+GGG - tig0032353:1346-1365 Msa1448930:intron 40.0%
TGGTAATCTTCCCGCAATAA+GGG + tig0032353:1359-1378 None:intergenic 40.0%
ATCTCATTATCTGTACGTCC+TGG + tig0032353:1379-1398 None:intergenic 40.0%
CTCTGAATCTTCTGGTACTT+TGG + tig0032353:1482-1501 None:intergenic 40.0%
GTCTTCTTCTCTGAATCTTC+TGG + tig0032353:1490-1509 None:intergenic 40.0%
AAAGTCTTCTTCACCCTTAC+AGG + tig0032353:1532-1551 None:intergenic 40.0%
!! TGGGTTTGGATTGTTGTTTG+AGG - tig0032353:1666-1685 Msa1448930:exon 40.0%
CTTGGTCAACAATGATGACA+TGG - tig0032353:1705-1724 Msa1448930:five_prime_UTR 40.0%
TTACAAGCACGAACACTGCT+CGG - tig0032353:921-940 Msa1448930:CDS 45.0%
ATGAAGGACGGACACATACA+CGG + tig0032353:1051-1070 None:intergenic 45.0%
CCAACCCATTCTTTCACGTA+AGG + tig0032353:1187-1206 None:intergenic 45.0%
CCTTACGTGAAAGAATGGGT+TGG - tig0032353:1184-1203 Msa1448930:intron 45.0%
!! TACGTGAAAGAATGGGTTGG+TGG - tig0032353:1187-1206 Msa1448930:intron 45.0%
CTGGTAATCTTCCCGCAATA+AGG + tig0032353:1360-1379 None:intergenic 45.0%
CTTATTGCGGGAAGATTACC+AGG - tig0032353:1358-1377 Msa1448930:intron 45.0%
TTCTTCACCCTTACAGGCTT+TGG + tig0032353:1526-1545 None:intergenic 45.0%
!! GAGAGAGACAATGATGGGTT+TGG - tig0032353:1652-1671 Msa1448930:exon 45.0%
CATTGTTGACCAAGTCTGCA+TGG + tig0032353:1699-1718 None:intergenic 45.0%
GATGACATGGAATGCCAATC+TGG - tig0032353:1718-1737 Msa1448930:five_prime_UTR 45.0%
TTACAAGCACGAACACTGCT+CGG - tig0032353:921-940 Msa1448930:CDS 45.0%
ATGAAGGACGGACACATACA+CGG + tig0032353:1051-1070 None:intergenic 45.0%
CCAACCCATTCTTTCACGTA+AGG + tig0032353:1187-1206 None:intergenic 45.0%
CCTTACGTGAAAGAATGGGT+TGG - tig0032353:1184-1203 Msa1448930:intron 45.0%
!! TACGTGAAAGAATGGGTTGG+TGG - tig0032353:1187-1206 Msa1448930:intron 45.0%
CTGGTAATCTTCCCGCAATA+AGG + tig0032353:1360-1379 None:intergenic 45.0%
CTTATTGCGGGAAGATTACC+AGG - tig0032353:1358-1377 Msa1448930:intron 45.0%
TTCTTCACCCTTACAGGCTT+TGG + tig0032353:1526-1545 None:intergenic 45.0%
!! GAGAGAGACAATGATGGGTT+TGG - tig0032353:1652-1671 Msa1448930:exon 45.0%
CATTGTTGACCAAGTCTGCA+TGG + tig0032353:1699-1718 None:intergenic 45.0%
GATGACATGGAATGCCAATC+TGG - tig0032353:1718-1737 Msa1448930:five_prime_UTR 45.0%
! TTGGGTTGCATAGAGGTCCA+TGG - tig0032353:767-786 Msa1448930:CDS 50.0%
GCATCTTCACGTGAAGTCCA+TGG + tig0032353:787-806 None:intergenic 50.0%
AAGCTCATGGAGAAGGCCAA+TGG - tig0032353:827-846 Msa1448930:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG - tig0032353:1214-1233 Msa1448930:intron 50.0%
CTCAGCAACAACAAGCCAAG+CGG - tig0032353:1600-1619 Msa1448930:CDS 50.0%
AACAACAAGCCAAGCGGAAG+AGG - tig0032353:1606-1625 Msa1448930:CDS 50.0%
ACAACAAGCCAAGCGGAAGA+GGG - tig0032353:1607-1626 Msa1448930:CDS 50.0%
GGAACAGTACCATGCAGACT+TGG - tig0032353:1687-1706 Msa1448930:five_prime_UTR 50.0%
! TTGGGTTGCATAGAGGTCCA+TGG - tig0032353:767-786 Msa1448930:CDS 50.0%
GCATCTTCACGTGAAGTCCA+TGG + tig0032353:787-806 None:intergenic 50.0%
AAGCTCATGGAGAAGGCCAA+TGG - tig0032353:827-846 Msa1448930:CDS 50.0%
GATGCAGGGCTTCTTAGATG+TGG - tig0032353:1214-1233 Msa1448930:intron 50.0%
CTCAGCAACAACAAGCCAAG+CGG - tig0032353:1600-1619 Msa1448930:CDS 50.0%
AACAACAAGCCAAGCGGAAG+AGG - tig0032353:1606-1625 Msa1448930:CDS 50.0%
ACAACAAGCCAAGCGGAAGA+GGG - tig0032353:1607-1626 Msa1448930:CDS 50.0%
GGAACAGTACCATGCAGACT+TGG - tig0032353:1687-1706 Msa1448930:five_prime_UTR 50.0%
!! TGGGTTGGTGGTTGTGATGC+AGG - tig0032353:1199-1218 Msa1448930:intron 55.0%
!! GGGTTGGTGGTTGTGATGCA+GGG - tig0032353:1200-1219 Msa1448930:intron 55.0%
TTTGCTCTCCCTCTTCCGCT+TGG + tig0032353:1618-1637 None:intergenic 55.0%
!! TGGGTTGGTGGTTGTGATGC+AGG - tig0032353:1199-1218 Msa1448930:intron 55.0%
!! GGGTTGGTGGTTGTGATGCA+GGG - tig0032353:1200-1219 Msa1448930:intron 55.0%
TTTGCTCTCCCTCTTCCGCT+TGG + tig0032353:1618-1637 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0032353 gene 569 1837 569 ID=Msa1448930;Name=Msa1448930
tig0032353 mRNA 569 1837 569 ID=Msa1448930-mRNA-1;Parent=Msa1448930;Name=Msa1448930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|1|0.5|1|1|1|2|0|250
tig0032353 exon 569 1185 569 ID=Msa1448930-mRNA-1:exon:16726;Parent=Msa1448930-mRNA-1
tig0032353 exon 1535 1837 1535 ID=Msa1448930-mRNA-1:exon:16725;Parent=Msa1448930-mRNA-1
tig0032353 five_prime_UTR 1668 1837 1668 ID=Msa1448930-mRNA-1:five_prime_utr;Parent=Msa1448930-mRNA-1
tig0032353 CDS 1535 1667 1535 ID=Msa1448930-mRNA-1:cds;Parent=Msa1448930-mRNA-1
tig0032353 CDS 569 1185 569 ID=Msa1448930-mRNA-1:cds;Parent=Msa1448930-mRNA-1
Gene Sequence

>Msa1448930

ATGGGAAGAACTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCACGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTAGATGTGGAAAAAGTTGCAGACTAAGATGGATGAACTATCTAAGACCAGATATAAAGAGAGGAAACATAACTCCAGAAGAAGATGACCTTATCATGAGAATGCATTCACTTATTGGTAATAGATGGTCCCTTATTGCGGGAAGATTACCAGGACGTACAGATAATGAGATAAAGAATTACTGGAACACACATCTCAGTAAAAAGAAGAAAAAGAAGCAGAAGAAAAATGACAAGAACAGAGTCATAATAACCAAAGTACCAGAAGATTCAGAGAAGAAGACCTTAGTTTATCTACCAAAGCCTGTAAGGGTGAAGAAGACTTTATCATCAATAATACCAAGAACTGATAGTACCTTGAACTTGGAATACAACTCAGCAACAACAAGCCAAGCGGAAGAGGGAGAGCAAAGAGCAGAAACAAAAGAGAGAGACAATGATGGGTTTGGATTGTTGTTTGAGGAACAGTACCATGCAGACTTGGTCAACAATGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTATTGAAGAATGAAGAAAATCATGAAAAAATACTAGATTCTTCTTTTGCGGAGTCCTTATTA

Protein sequence

>Msa1448930

MGRTPCCSKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIMRMHSLIGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKKKKKQKKNDKNRVIITKVPEDSEKKTLVYLPKPVRVKKTLSSIIPRTDSTLNLEYNSATTSQAEEGEQRAETKERDNDGFGLLFEEQYHADLVNNDDMECQSGFLEKMYEEYLQLLKNEENHEKILDSSFAESLL