AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412290 MtrunA17_Chr8g0386341 93.590 234 13 1 165 398 17 248 2.59e-161 453
Msa1412290 MtrunA17_Chr8g0386341 50.932 161 63 4 2 151 28 183 5.46e-44 153
Msa1412290 MtrunA17_Chr8g0386351 89.881 168 7 1 1 158 43 210 2.83e-103 304
Msa1412290 MtrunA17_Chr8g0386351 48.472 229 70 3 171 398 37 218 1.21e-64 206
Msa1412290 MtrunA17_Chr5g0397821 66.019 206 67 2 195 398 21 225 2.40e-97 290
Msa1412290 MtrunA17_Chr5g0397821 54.815 135 48 3 19 141 21 154 4.39e-37 134
Msa1412290 MtrunA17_Chr5g0397831 54.661 236 94 3 174 398 3 236 6.74e-88 266
Msa1412290 MtrunA17_Chr5g0397831 42.593 162 76 4 1 146 1 161 2.99e-34 127
Msa1412290 MtrunA17_Chr5g0428801 42.800 250 110 9 175 398 8 250 5.51e-53 179
Msa1412290 MtrunA17_Chr5g0428801 38.806 134 62 5 5 119 8 140 5.14e-17 81.3
Msa1412290 MtrunA17_Chr5g0424221 42.562 242 118 7 172 397 3 239 2.88e-51 173
Msa1412290 MtrunA17_Chr5g0424221 33.178 214 94 9 1 169 1 210 4.65e-19 86.7
Msa1412290 MtrunA17_Chr8g0371771 40.948 232 118 9 183 397 14 243 1.13e-46 162
Msa1412290 MtrunA17_Chr8g0371771 32.328 232 118 12 6 203 15 241 1.18e-18 85.9
Msa1412290 MtrunA17_Chr1g0154591 40.948 232 114 7 188 398 3 232 3.92e-46 158
Msa1412290 MtrunA17_Chr1g0154591 40.323 124 54 4 20 124 11 133 4.20e-17 80.1
Msa1412290 MtrunA17_Chr2g0312181 40.084 237 121 6 183 398 7 243 1.32e-45 157
Msa1412290 MtrunA17_Chr2g0312181 30.460 174 90 6 1 155 1 162 7.49e-15 73.9
Msa1412290 MtrunA17_Chr6g0482741 39.184 245 122 9 176 398 1 240 2.24e-45 156
Msa1412290 MtrunA17_Chr6g0482741 33.161 193 94 11 7 170 1 187 2.06e-15 75.5
Msa1412290 MtrunA17_Chr3g0142781 38.153 249 127 8 175 398 3 249 1.07e-44 157
Msa1412290 MtrunA17_Chr3g0142781 37.500 136 64 5 3 119 8 141 1.50e-18 85.9
Msa1412290 MtrunA17_Chr1g0156711 40.329 243 117 9 180 397 6 245 1.12e-44 157
Msa1412290 MtrunA17_Chr1g0156711 37.681 138 64 6 1 119 4 138 7.19e-18 84.0
Msa1412290 MtrunA17_Chr8g0392961 39.113 248 120 11 177 398 3 245 4.54e-44 153
Msa1412290 MtrunA17_Chr8g0392961 37.391 115 51 5 26 122 31 142 7.81e-15 73.9
Msa1412290 MtrunA17_Chr8g0351851 39.407 236 116 10 185 397 6 237 1.69e-43 151
Msa1412290 MtrunA17_Chr8g0351851 32.124 193 100 11 1 170 1 185 1.02e-14 73.2
Msa1412290 MtrunA17_Chr5g0405611 40.000 235 121 10 181 398 77 308 6.68e-43 154
Msa1412290 MtrunA17_Chr5g0405611 39.231 130 59 7 6 119 82 207 2.02e-18 86.3
Msa1412290 MtrunA17_Chr3g0112091 38.075 239 123 10 183 398 1 237 6.78e-43 150
Msa1412290 MtrunA17_Chr3g0112091 32.948 173 91 9 6 154 1 172 4.78e-15 74.3
Msa1412290 MtrunA17_Chr4g0037331 41.202 233 114 10 184 397 11 239 1.04e-42 152
Msa1412290 MtrunA17_Chr4g0037331 39.130 138 63 6 1 119 4 139 9.42e-17 80.9
Msa1412290 MtrunA17_Chr1g0180161 40.175 229 113 9 192 398 16 242 2.53e-42 149
Msa1412290 MtrunA17_Chr1g0180161 31.013 158 86 6 1 140 1 153 1.97e-14 72.8
Msa1412290 MtrunA17_Chr8g0352471 39.344 244 119 10 178 398 10 247 4.76e-42 150
Msa1412290 MtrunA17_Chr8g0352471 38.732 142 59 6 1 121 9 143 1.38e-20 91.7
Msa1412290 MtrunA17_Chr4g0037351 39.113 248 119 10 179 398 5 248 7.66e-42 149
Msa1412290 MtrunA17_Chr4g0037351 35.976 164 77 7 3 140 5 166 8.92e-20 89.4
Msa1412290 MtrunA17_Chr3g0141341 37.768 233 122 8 187 398 1 231 1.31e-41 146
Msa1412290 MtrunA17_Chr3g0141341 36.975 119 56 4 24 124 14 131 2.85e-15 74.7
Msa1412290 MtrunA17_Chr8g0357311 38.956 249 126 8 174 398 1 247 1.79e-41 147
Msa1412290 MtrunA17_Chr8g0357311 36.429 140 61 6 1 119 9 141 1.69e-17 81.6
Msa1412290 MtrunA17_Chr5g0405581 38.800 250 116 11 178 398 10 251 6.02e-41 146
Msa1412290 MtrunA17_Chr5g0405581 39.855 138 59 6 3 119 7 141 6.70e-19 86.7
Msa1412290 MtrunA17_Chr7g0239131 36.214 243 131 9 178 398 2 242 7.92e-41 144
Msa1412290 MtrunA17_Chr7g0239131 34.270 178 92 9 1 154 1 177 6.59e-18 82.4
Msa1412290 MtrunA17_Chr1g0180121 38.819 237 117 9 188 398 8 242 3.25e-40 143
Msa1412290 MtrunA17_Chr1g0180121 29.747 158 88 6 1 140 1 153 8.22e-14 70.9
Msa1412290 MtrunA17_Chr8g0371781 40.000 230 106 9 197 397 27 253 3.37e-40 145
Msa1412290 MtrunA17_Chr8g0371781 37.805 164 71 7 21 154 27 189 1.89e-19 88.2
Msa1412290 MtrunA17_Chr2g0311521 43.210 243 105 12 182 398 12 247 2.46e-39 150
Msa1412290 MtrunA17_Chr2g0311521 37.903 124 53 3 21 121 23 145 1.87e-17 84.7
Msa1412290 MtrunA17_Chr7g0265011 34.875 281 146 11 142 398 20 287 1.32e-38 140
Msa1412290 MtrunA17_Chr7g0265011 33.117 154 80 5 5 140 50 198 4.37e-16 78.2
Msa1412290 MtrunA17_Chr1g0180221 35.484 279 157 9 141 398 6 282 1.59e-38 140
Msa1412290 MtrunA17_Chr1g0180221 32.278 158 84 7 1 140 41 193 8.81e-14 71.2
Msa1412290 MtrunA17_Chr4g0031221 34.025 241 129 9 182 397 16 251 7.03e-37 134
Msa1412290 MtrunA17_Chr4g0031221 36.975 119 57 5 19 119 26 144 3.53e-14 72.0
Msa1412290 MtrunA17_Chr1g0179891 36.929 241 125 9 179 398 3 237 6.74e-36 131
Msa1412290 MtrunA17_Chr1g0179891 35.971 139 62 8 22 140 17 148 1.73e-13 69.7
Msa1412290 MtrunA17_Chr8g0386361 48.101 158 34 3 1 158 1 110 1.14e-35 127
Msa1412290 MtrunA17_Chr1g0179851 35.833 240 129 9 182 398 2 239 1.17e-35 131
Msa1412290 MtrunA17_Chr1g0179851 35.971 139 62 8 22 140 19 150 2.19e-13 69.3
Msa1412290 MtrunA17_Chr1g0180231 36.885 244 131 9 176 398 1 242 4.88e-35 129
Msa1412290 MtrunA17_Chr1g0180231 32.704 159 82 7 1 140 1 153 3.82e-15 74.7
Msa1412290 MtrunA17_Chr1g0179871 36.885 244 131 9 176 398 1 242 4.88e-35 129
Msa1412290 MtrunA17_Chr1g0179871 32.704 159 82 7 1 140 1 153 3.82e-15 74.7
Msa1412290 MtrunA17_Chr2g0311561 37.333 225 116 9 197 398 10 232 3.20e-34 128
Msa1412290 MtrunA17_Chr2g0311561 30.682 176 85 7 7 154 1 167 3.85e-15 75.5
Msa1412290 MtrunA17_Chr6g0452331 35.743 249 131 12 176 398 7 252 1.50e-33 126
Msa1412290 MtrunA17_Chr6g0452331 34.058 138 70 4 2 119 9 145 1.72e-13 70.1
Msa1412290 MtrunA17_Chr2g0311551 38.865 229 115 9 193 398 18 244 4.13e-33 131
Msa1412290 MtrunA17_Chr2g0311551 32.075 159 82 5 21 154 22 179 3.09e-12 68.6
Msa1412290 MtrunA17_Chr2g0311531 41.148 209 104 11 197 398 26 222 8.17e-32 120
Msa1412290 MtrunA17_Chr2g0311531 34.043 188 68 5 21 154 26 211 5.00e-23 97.1
Msa1412290 MtrunA17_Chr1g0179911 30.508 236 145 7 179 398 6 238 1.13e-27 109
Msa1412290 MtrunA17_Chr2g0311501 37.569 181 92 9 236 398 5 182 2.41e-25 102
Msa1412290 MtrunA17_Chr5g0406771 37.640 178 89 9 185 342 1 176 1.17e-20 88.6
Msa1412290 MtrunA17_Chr5g0406771 31.618 136 69 5 12 125 3 136 2.47e-12 65.1
Msa1412290 MtrunA17_Chr2g0309611 26.772 254 148 11 176 396 1 249 1.21e-18 84.7
Msa1412290 MtrunA17_Chr1g0180181 46.341 82 33 2 328 398 18 99 6.26e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412290 AT4G11650.1 63.964 222 75 4 179 398 5 223 5.55e-97 290
Msa1412290 AT4G11650.1 52.830 159 61 4 1 146 1 158 1.11e-44 155
Msa1412290 AT1G75040.1 44.872 234 108 7 183 398 9 239 2.98e-54 180
Msa1412290 AT1G75040.1 36.207 174 88 7 1 154 4 174 3.47e-18 83.6
Msa1412290 AT1G75050.1 41.494 241 119 6 178 398 5 243 7.45e-52 174
Msa1412290 AT1G75050.1 40.741 135 61 4 2 119 5 137 3.45e-20 89.4
Msa1412290 AT5G24620.4 41.245 257 120 9 170 398 53 306 3.70e-51 178
Msa1412290 AT5G24620.4 31.944 144 78 5 3 127 61 203 1.69e-13 72.4
Msa1412290 AT5G24620.3 41.245 257 120 9 170 398 74 327 5.61e-51 178
Msa1412290 AT5G24620.3 31.944 144 78 5 3 127 82 224 1.97e-13 72.0
Msa1412290 AT5G24620.1 41.600 250 116 8 177 398 4 251 7.05e-51 176
Msa1412290 AT5G24620.1 31.250 144 79 5 3 127 6 148 1.21e-13 72.4
Msa1412290 AT1G77700.3 42.857 217 103 7 197 397 60 271 6.66e-49 169
Msa1412290 AT1G77700.3 38.462 169 82 6 4 154 43 207 5.22e-25 104
Msa1412290 AT1G77700.2 41.702 235 114 8 181 397 42 271 1.17e-48 167
Msa1412290 AT1G77700.2 38.462 169 82 6 4 154 43 207 4.80e-25 104
Msa1412290 AT1G77700.1 42.857 217 103 7 197 397 88 299 4.91e-48 167
Msa1412290 AT1G77700.1 38.710 155 73 6 18 154 85 235 4.92e-23 99.8
Msa1412290 AT1G75030.1 39.676 247 124 8 173 398 1 243 1.87e-47 162
Msa1412290 AT1G75030.1 36.765 136 67 5 1 119 4 137 1.26e-17 82.0
Msa1412290 AT1G19320.1 39.759 249 122 9 172 397 3 246 5.68e-47 161
Msa1412290 AT1G19320.1 35.507 138 67 7 6 122 10 146 1.61e-14 73.2
Msa1412290 AT4G38670.3 39.759 249 122 10 176 398 1 247 7.37e-47 162
Msa1412290 AT4G38670.3 39.568 139 57 7 5 119 4 139 3.38e-17 81.6
Msa1412290 AT4G38670.1 39.759 249 122 10 176 398 1 247 7.37e-47 162
Msa1412290 AT4G38670.1 39.568 139 57 7 5 119 4 139 3.38e-17 81.6
Msa1412290 AT4G38660.1 40.329 243 122 10 175 398 7 245 9.64e-46 161
Msa1412290 AT4G38660.1 37.879 132 61 5 7 119 15 144 5.39e-18 85.1
Msa1412290 AT4G38670.2 41.304 230 107 10 195 398 4 231 7.87e-45 156
Msa1412290 AT4G38670.2 38.095 126 53 6 16 119 1 123 2.24e-15 76.3
Msa1412290 AT1G75800.1 39.024 246 112 9 187 398 7 248 9.38e-44 155
Msa1412290 AT1G75800.1 38.129 139 65 6 1 119 1 138 1.65e-18 86.3
Msa1412290 AT4G38660.2 42.273 220 104 10 198 398 8 223 6.43e-43 153
Msa1412290 AT4G38660.2 39.024 123 54 5 16 119 2 122 5.22e-17 81.6
Msa1412290 AT4G36010.1 42.424 231 98 11 199 398 24 250 7.68e-42 149
Msa1412290 AT4G36010.1 46.552 116 41 5 24 119 25 139 9.42e-20 89.4
Msa1412290 AT4G36010.2 42.424 231 98 11 199 398 24 250 7.68e-42 149
Msa1412290 AT4G36010.2 46.552 116 41 5 24 119 25 139 9.42e-20 89.4
Msa1412290 AT1G20030.1 39.207 227 109 8 199 398 4 228 2.94e-41 147
Msa1412290 AT1G20030.1 36.522 115 53 4 24 119 5 118 2.83e-14 73.6
Msa1412290 AT1G20030.2 39.207 227 109 8 199 398 21 245 3.95e-41 148
Msa1412290 AT1G20030.2 36.522 115 53 4 24 119 22 135 3.43e-14 73.2
Msa1412290 AT1G73620.1 40.444 225 106 9 197 398 41 260 1.09e-40 145
Msa1412290 AT1G73620.1 39.286 112 47 4 28 121 48 156 3.98e-15 75.5
Msa1412290 AT1G18250.1 38.326 227 116 7 193 398 16 239 1.51e-40 144
Msa1412290 AT1G18250.1 38.655 119 52 5 21 121 20 135 1.20e-14 73.6
Msa1412290 AT2G17860.1 38.956 249 121 10 179 398 3 249 4.75e-40 143
Msa1412290 AT2G17860.1 39.716 141 61 6 1 119 1 139 5.29e-19 86.3
Msa1412290 AT1G18250.2 38.667 225 114 7 195 398 19 240 4.98e-40 143
Msa1412290 AT1G18250.2 37.705 122 55 5 18 121 18 136 8.27e-15 73.9
Msa1412290 AT4G24180.6 36.434 258 120 11 174 398 10 256 5.68e-39 140
Msa1412290 AT4G24180.6 33.974 156 77 6 3 133 14 168 2.52e-16 78.6
Msa1412290 AT4G24180.5 35.385 260 125 10 172 398 2 251 5.72e-39 140
Msa1412290 AT4G24180.5 31.847 157 81 6 2 133 8 163 1.62e-14 73.6
Msa1412290 AT4G24180.1 36.434 258 120 11 174 398 10 256 1.43e-38 141
Msa1412290 AT4G24180.1 35.915 142 65 6 3 119 14 154 3.64e-16 79.3
Msa1412290 AT5G38280.1 35.857 251 129 8 179 398 1 250 1.61e-38 147
Msa1412290 AT5G38280.1 25.260 289 152 13 4 239 7 284 9.07e-15 76.6
Msa1412290 AT4G24180.2 35.385 260 125 10 172 398 2 251 1.91e-38 140
Msa1412290 AT4G24180.2 33.566 143 69 6 2 119 8 149 2.50e-14 73.6
Msa1412290 AT5G38280.2 35.857 251 129 8 179 398 1 250 2.27e-38 146
Msa1412290 AT5G38280.2 25.086 291 150 13 4 239 7 284 9.05e-15 76.6
Msa1412290 AT5G02140.2 36.287 237 127 10 184 398 7 241 3.18e-36 133
Msa1412290 AT5G02140.2 32.370 173 88 7 6 154 9 176 1.16e-16 79.3
Msa1412290 AT5G02140.1 36.287 237 127 10 184 398 7 241 5.36e-36 134
Msa1412290 AT5G02140.1 32.000 175 90 7 6 156 9 178 1.24e-16 80.1
Msa1412290 AT2G28790.2 32.061 262 154 9 159 397 13 273 3.41e-35 131
Msa1412290 AT2G28790.1 33.471 242 137 9 179 397 8 248 8.06e-35 129
Msa1412290 AT4G24180.3 35.537 242 113 10 174 382 10 241 1.67e-33 127
Msa1412290 AT4G24180.3 33.974 156 77 6 3 133 14 168 1.04e-15 77.8
Msa1412290 AT4G24180.4 34.426 244 118 9 172 382 2 236 1.87e-33 127
Msa1412290 AT4G24180.4 31.847 157 81 6 2 133 8 163 6.55e-14 72.4
Msa1412290 AT5G40020.1 32.927 246 138 10 177 398 6 248 1.61e-31 120
Msa1412290 AT5G40020.1 28.889 180 93 9 6 154 8 183 1.63e-13 70.5
Msa1412290 AT1G70250.1 32.895 228 125 7 196 398 143 367 8.22e-29 119
Msa1412290 AT4G36000.2 41.844 141 71 5 266 398 1 138 1.35e-26 106
Msa1412290 AT4G36000.1 41.844 141 71 5 266 398 1 138 1.35e-26 106
Msa1412290 AT4G18253.1 32.636 239 130 9 184 398 7 238 4.30e-25 103
Msa1412290 AT4G18250.1 32.308 260 140 10 172 398 16 272 4.51e-25 107
Msa1412290 AT5G24620.2 40.496 121 53 4 296 398 15 134 8.83e-18 83.6

Find 121 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAACCAATATATGAATT+TGG 0.157413 tig0023878:+52672 Msa1412290:CDS
GAACCACATCGGCCCGTATT+TGG 0.159384 tig0023878:+52530 Msa1412290:CDS
GAACCTCAGCTGCCCGAATT+TGG 0.169399 tig0023878:+46331 Msa1412290:CDS
AATATTATTATTGCCTATAT+TGG 0.201835 tig0023878:+46167 Msa1412290:CDS
ACTTAACGGTGGAAACAATT+TGG 0.203853 tig0023878:+46473 Msa1412290:CDS
GAGTATTCTGCTAGTGTATT+TGG 0.215037 tig0023878:-52649 None:intergenic
GATAATTACTGTTGTAATTC+TGG 0.224646 tig0023878:+52865 Msa1412290:CDS
GCAAAAGACAACCTTGTAAT+TGG 0.235208 tig0023878:-52995 None:intergenic
AAAAGTCCAAATTCATATAT+TGG 0.238245 tig0023878:-52678 None:intergenic
AACCTCAGCTGCCCGAATTT+GGG 0.246234 tig0023878:+46332 Msa1412290:CDS
AGACTTGTCGCATCATCTTT+TGG 0.259319 tig0023878:-52952 None:intergenic
CAATTTAGTTCAACTTCTAA+TGG 0.270728 tig0023878:+46540 Msa1412290:CDS
GGTTGTAGCTTCGACGGTTC+AGG 0.298469 tig0023878:+52562 Msa1412290:CDS
AACCGGTTCGGCCCCAAATT+CGG 0.298991 tig0023878:-46344 None:intergenic
TTTGATATATCTGTTATTGA+TGG 0.305472 tig0023878:+52700 Msa1412290:CDS
GAATTTAGTCCAACTTCTAA+TGG 0.321769 tig0023878:+52739 Msa1412290:CDS
ACCGGTTCGGCCCCAAATTC+GGG 0.325390 tig0023878:-46343 None:intergenic
AGAATTACAACAGTAATTAT+CGG 0.348427 tig0023878:-52863 None:intergenic
TTTGGGTAACTATAAGCATC+TGG 0.355236 tig0023878:-52934 None:intergenic
AACCACATCGGCCCGTATTT+GGG 0.357300 tig0023878:+52531 Msa1412290:CDS
GCTGCGGCCCATACAGTGTT+AGG 0.372800 tig0023878:-52445 None:intergenic
AGGTTCCTGCTGGGACGTCT+AGG 0.373429 tig0023878:-46314 None:intergenic
GTCGAAGCTACAACCGGTTC+TGG 0.376293 tig0023878:-52554 None:intergenic
AACCGGTTCTGGCCCAAATA+CGG 0.380313 tig0023878:-52543 None:intergenic
ACAATTGCCCTAACACTGTA+TGG 0.387614 tig0023878:+52437 Msa1412290:CDS
GGTTGCAGATTTGACGGTTC+AGG 0.391606 tig0023878:+46363 Msa1412290:CDS
ATTGATATATCCGTGATTGA+TGG 0.392044 tig0023878:+46501 Msa1412290:CDS
CGGGCAGCTGAGGTTCCTGC+TGG 0.395365 tig0023878:-46324 None:intergenic
TGGCGGTCGGCAGTTGAACT+CGG 0.398070 tig0023878:+46278 Msa1412290:CDS
GCCCGTATTTGGGCCAGAAC+CGG 0.409145 tig0023878:+52541 Msa1412290:CDS
CAACTGCCGACCGCCACCCC+TGG 0.416174 tig0023878:-46271 None:intergenic
GGACGTCTAGGGCCCATGTT+TGG 0.422664 tig0023878:-46302 None:intergenic
AGGACATTGTCCGATGATAT+CGG 0.422786 tig0023878:-52788 None:intergenic
GCCCTCAGTTGCAGCGTATC+CGG 0.424143 tig0023878:+46420 Msa1412290:intron
GCCCGAATTTGGGGCCGAAC+CGG 0.425383 tig0023878:+46342 Msa1412290:CDS
TGATGGATTCAACGTTCCTA+TGG 0.431040 tig0023878:+52717 Msa1412290:CDS
TGTGGCCAGCAGGCATTCCC+AGG 0.432973 tig0023878:+46253 Msa1412290:CDS
ATTAAACAGAGAGCCAATAT+AGG 0.437364 tig0023878:-46180 None:intergenic
CTTGCAGAATACACACTTAA+CGG 0.444433 tig0023878:+46459 Msa1412290:CDS
GAAGTTGAACTAAATTGCAT+TGG 0.446469 tig0023878:-46534 None:intergenic
TTGGGTTGATGATAAGCGTC+AGG 0.449898 tig0023878:-46600 None:intergenic
TACCGCCGCAGTCACCGGTT+TGG 0.450783 tig0023878:-52597 None:intergenic
CCACCCCTGGGAATGCCTGC+TGG 0.453658 tig0023878:-46258 None:intergenic
GGTTCCTGCAGCTACGTTGA+TGG 0.457014 tig0023878:-52512 None:intergenic
ACCGGTTCTGGCCCAAATAC+GGG 0.461130 tig0023878:-52542 None:intergenic
TCCTACACCGTGTGGCCAGC+AGG 0.465020 tig0023878:+46243 Msa1412290:CDS
CAGCTTACCGCCGCAGTCAC+CGG 0.467832 tig0023878:-52602 None:intergenic
AGTTGAACTCGGGCCAAACA+TGG 0.469395 tig0023878:+46289 Msa1412290:CDS
GGTTCCTGCTGGGACGTCTA+GGG 0.477500 tig0023878:-46313 None:intergenic
AACTGCCGACCGCCACCCCT+GGG 0.478248 tig0023878:-46270 None:intergenic
GTATGGGCCGCAGCTGTACC+AGG 0.485418 tig0023878:+52454 Msa1412290:CDS
TACCGGATACGCTGCAACTG+AGG 0.493865 tig0023878:-46422 None:intergenic
TTTAGTTGCTTACCGCCGCC+TGG 0.498951 tig0023878:-52472 None:intergenic
CGAACCGGTTGCAGATTTGA+CGG 0.499446 tig0023878:+46357 Msa1412290:CDS
CGTCAAATCTGCAACCGGTT+CGG 0.501459 tig0023878:-46356 None:intergenic
GCATTCCCAGGGGTGGCGGT+CGG 0.503845 tig0023878:+46265 Msa1412290:CDS
TGTTGTAATTCTGGTAATTG+TGG 0.504317 tig0023878:+52874 Msa1412290:CDS
AAGTGTGGTCGGAGGTCTAC+CGG 0.507917 tig0023878:-46439 None:intergenic
GCAGGCATTCCCAGGGGTGG+CGG 0.509045 tig0023878:+46261 Msa1412290:CDS
AGCTTCGACGGTTCAGGGAA+CGG 0.509735 tig0023878:+52568 Msa1412290:CDS
GAATGTTGCTGCCTGTGTAT+AGG 0.512475 tig0023878:-52404 None:intergenic
ACCTCAGCTGCCCGAATTTG+GGG 0.517805 tig0023878:+46333 Msa1412290:CDS
GCCCCAAATTCGGGCAGCTG+AGG 0.519010 tig0023878:-46334 None:intergenic
TGAACCGTCAAATCTGCAAC+CGG 0.519233 tig0023878:-46361 None:intergenic
GTGGCCAGCAGGCATTCCCA+GGG 0.520424 tig0023878:+46254 Msa1412290:CDS
GGCGGTCGGCAGTTGAACTC+GGG 0.524309 tig0023878:+46279 Msa1412290:CDS
GCCGCAGCTGTACCAGGCGG+CGG 0.526493 tig0023878:+52460 Msa1412290:CDS
AAGCTGAACTGCCAAGCTTA+CGG 0.527083 tig0023878:+52619 Msa1412290:CDS
CGTGTACAGCCATTAGAAGT+TGG 0.531099 tig0023878:-52748 None:intergenic
CAAAGGTGGAACCAATTACA+AGG 0.532510 tig0023878:+52984 Msa1412290:CDS
TTGGAGCTGTACCGTAAGCT+TGG 0.532816 tig0023878:-52630 None:intergenic
GGGAACGGTCGATGCCAAAC+CGG 0.534308 tig0023878:+52583 Msa1412290:CDS
AGATTTGACGGTTCAGGCCG+TGG 0.534325 tig0023878:+46369 Msa1412290:CDS
GCAACAAAGTACTAACCTGC+AGG 0.535215 tig0023878:+46565 Msa1412290:CDS
CCAGCAGGCATTCCCAGGGG+TGG 0.535691 tig0023878:+46258 Msa1412290:CDS
GTTGTAGCTTCGACGGTTCA+GGG 0.543711 tig0023878:+52563 Msa1412290:CDS
AGATGTACGGCCGATATCAT+CGG 0.544189 tig0023878:+52778 Msa1412290:CDS
GAAGTTGGACTAAATTCCAT+AGG 0.545035 tig0023878:-52733 None:intergenic
TGGACCATCAACGTAGCTGC+AGG 0.546070 tig0023878:+52508 Msa1412290:CDS
CTGCGGCCCATACAGTGTTA+GGG 0.547508 tig0023878:-52444 None:intergenic
GCCACACGGTGTAGGAGCAT+CGG 0.549741 tig0023878:-46236 None:intergenic
CCTAATGAGCTTAAAACTCA+AGG 0.551744 tig0023878:+52808 Msa1412290:CDS
GGGCAGCTGAGGTTCCTGCT+GGG 0.554803 tig0023878:-46323 None:intergenic
GGGAATGCCTGCTGGCCACA+CGG 0.556106 tig0023878:-46250 None:intergenic
TGAACCGTCGAAGCTACAAC+CGG 0.559589 tig0023878:-52560 None:intergenic
AGTCTATTCACTTGCAAAGG+TGG 0.560419 tig0023878:+52970 Msa1412290:CDS
AAAACTGTTACATGCCCTGC+TGG 0.561280 tig0023878:+46630 Msa1412290:CDS
GAAATATTGAGAATAGTTAG+TGG 0.566094 tig0023878:-52899 None:intergenic
TTGTGAGTAGAAAGTGGGAG+TGG 0.582239 tig0023878:-52299 None:intergenic
ACCGGATACGCTGCAACTGA+GGG 0.582645 tig0023878:-46421 None:intergenic
GTTGAACTCGGGCCAAACAT+GGG 0.584315 tig0023878:+46290 Msa1412290:CDS
TTGGGTAACTATAAGCATCT+GGG 0.584853 tig0023878:-52933 None:intergenic
GCCTGCTGGCCACACGGTGT+AGG 0.587001 tig0023878:-46244 None:intergenic
GGCCCAAATACGGGCCGATG+TGG 0.589446 tig0023878:-52533 None:intergenic
CAATTGCCCTAACACTGTAT+GGG 0.589746 tig0023878:+52438 Msa1412290:CDS
ACAAGTCTATTCACTTGCAA+AGG 0.595377 tig0023878:+52967 Msa1412290:CDS
ACTTCTAATGGCTGTACACG+TGG 0.600518 tig0023878:+52751 Msa1412290:CDS
AAATATTGAGAATAGTTAGT+GGG 0.606985 tig0023878:-52898 None:intergenic
AGGGCAATTAGAATCCCTGC+AGG 0.610979 tig0023878:-46580 None:intergenic
CGATGCCAAACCGGTGACTG+CGG 0.617634 tig0023878:+52592 Msa1412290:CDS
AGAACCGGTTGTAGCTTCGA+CGG 0.620579 tig0023878:+52556 Msa1412290:CDS
GTGTATTCTGCAAGTGTGGT+CGG 0.621122 tig0023878:-46450 None:intergenic
TGGGCCCTAGACGTCCCAGC+AGG 0.625631 tig0023878:+46309 Msa1412290:CDS
TACACGTGGCATAAGATGTA+CGG 0.626336 tig0023878:+52765 Msa1412290:CDS
AATGTTGAAACCATCAATCA+CGG 0.630462 tig0023878:-46511 None:intergenic
TCTCTCTTTCACCTATACAC+AGG 0.631862 tig0023878:+52393 Msa1412290:CDS
TTCTATAGTTGGTACCAGCA+GGG 0.634139 tig0023878:-46644 None:intergenic
TGCCAAACCGGTGACTGCGG+CGG 0.639305 tig0023878:+52595 Msa1412290:CDS
ACCGCCGCCTGGTACAGCTG+CGG 0.644365 tig0023878:-52461 None:intergenic
TAATATCTACACAAGCAGCA+AGG 0.650241 tig0023878:+46199 Msa1412290:CDS
TGGGTTGATGATAAGCGTCA+GGG 0.653624 tig0023878:-46599 None:intergenic
ACCGATGCTCCTACACCGTG+TGG 0.659283 tig0023878:+46235 Msa1412290:CDS
CAACAAAGTACTAACCTGCA+GGG 0.664924 tig0023878:+46566 Msa1412290:CDS
CGTAGCTGCAGGAACCACAT+CGG 0.673819 tig0023878:+52519 Msa1412290:CDS
AAGTGTGTATTCTGCAAGTG+TGG 0.680757 tig0023878:-46454 None:intergenic
TGGCCAGCAGGCATTCCCAG+GGG 0.692813 tig0023878:+46255 Msa1412290:CDS
TGGGCCGCAGCTGTACCAGG+CGG 0.694399 tig0023878:+52457 Msa1412290:CDS
GGCGGTAAGCAACTAAACCG+CGG 0.701327 tig0023878:+52478 Msa1412290:CDS
AATGAGCTTAAAACTCAAGG+TGG 0.704721 tig0023878:+52811 Msa1412290:CDS
TATTCTGCAAGTGTGGTCGG+AGG 0.710918 tig0023878:-46447 None:intergenic
GCAGAATACACACTTAACGG+TGG 0.731861 tig0023878:+46462 Msa1412290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTATTAATTTTATT+AGG - tig0023878:50534-50553 None:intergenic 0.0%
!! AATAAAATTAATAAATAATA+AGG + tig0023878:50534-50553 Msa1412290:intron 0.0%
!!! TATTATTTATTAATTTTATT+AGG - tig0023878:50534-50553 None:intergenic 0.0%
!! AATAAAATTAATAAATAATA+AGG + tig0023878:50534-50553 Msa1412290:intron 0.0%
!!! TATTAAATATATTTTATAAA+TGG + tig0023878:51826-51845 Msa1412290:intron 0.0%
!!! AATAGAAAAGTATTAATTTT+AGG - tig0023878:48327-48346 None:intergenic 10.0%
!! TTTATTGTAATTTATGATAT+GGG - tig0023878:48497-48516 None:intergenic 10.0%
!!! TTTTATTGTAATTTATGATA+TGG - tig0023878:48498-48517 None:intergenic 10.0%
!! AAATACTTAAAAAACAATAA+TGG - tig0023878:49627-49646 None:intergenic 10.0%
!! AAATACTTAAAAAACAATAA+TGG + tig0023878:49627-49646 Msa1412290:intron 10.0%
!!! TGTATATAAAGATTTTTTTA+AGG + tig0023878:50009-50028 Msa1412290:intron 10.0%
!! CTTAACAAAATTAATAAATA+AGG + tig0023878:50728-50747 Msa1412290:intron 10.0%
!! ATTAATAAATAATAAGGATA+AGG + tig0023878:50540-50559 Msa1412290:intron 10.0%
!! CTTAACAAAATTAATAAATA+AGG + tig0023878:50728-50747 Msa1412290:intron 10.0%
!!! TTTTTTTGTTTTTATCAAAA+GGG - tig0023878:51571-51590 None:intergenic 10.0%
!!! ATTTTTTTGTTTTTATCAAA+AGG - tig0023878:51572-51591 None:intergenic 10.0%
!! AAAAACAAAAAAATTAATAG+GGG + tig0023878:51578-51597 Msa1412290:intron 10.0%
!!! AATATTTTAAAATTCTACAA+TGG + tig0023878:51915-51934 Msa1412290:intron 10.0%
!! AATATTATTATTGCCTATAT+TGG + tig0023878:46167-46186 Msa1412290:CDS 15.0%
!!! AAAAAAAAAAAGCATTATCT+TGG + tig0023878:46895-46914 Msa1412290:intron 15.0%
!!! ATACTTATTTAAATTTTGCT+TGG - tig0023878:46961-46980 None:intergenic 15.0%
!! TTCATTTCAAAATTTATATC+CGG - tig0023878:47325-47344 None:intergenic 15.0%
!!! TAAATTTTGAAATGAAGTAA+AGG + tig0023878:47329-47348 Msa1412290:intron 15.0%
!! TAATAATTTATGTTTACCTA+GGG - tig0023878:48033-48052 None:intergenic 15.0%
!! TTAATAATTTATGTTTACCT+AGG - tig0023878:48034-48053 None:intergenic 15.0%
!!! ATTATTATATGCTTTAGTTT+TGG - tig0023878:48381-48400 None:intergenic 15.0%
!! AATAAAAAAAACATTTGAAC+CGG + tig0023878:48511-48530 Msa1412290:intron 15.0%
!!! TTTTTGAGTATTTTTTCAAA+TGG - tig0023878:49431-49450 None:intergenic 15.0%
!! TGAAAAAATACTCAAAAAAA+AGG + tig0023878:49433-49452 Msa1412290:intron 15.0%
!!! TATCATATTTTTTTGTCATA+GGG + tig0023878:49860-49879 Msa1412290:intron 15.0%
!! TAGTAGAATTTAATTCTATA+TGG - tig0023878:50089-50108 None:intergenic 15.0%
!! TAAAAAATTAATGTAGTTCA+TGG + tig0023878:50375-50394 Msa1412290:intron 15.0%
!!! TTTGTTTTGAAAAATATTCA+CGG + tig0023878:50865-50884 Msa1412290:intron 15.0%
!!! ATTAACAATGATGATTTTAA+TGG + tig0023878:51128-51147 Msa1412290:intron 15.0%
!! AACTTTAACTAAAAAACAAA+GGG - tig0023878:52107-52126 None:intergenic 15.0%
!! TAACTTTAACTAAAAAACAA+AGG - tig0023878:52108-52127 None:intergenic 15.0%
!! TTTAAACCAATATATGAATT+TGG + tig0023878:52672-52691 Msa1412290:CDS 15.0%
!! AGTAATAAATAGAAAACACT+AGG - tig0023878:46697-46716 None:intergenic 20.0%
!!! ATTTAAATTTTGCTTGGAAA+CGG - tig0023878:46955-46974 None:intergenic 20.0%
!!! AAATCTTTGGATTTTAAAAC+AGG - tig0023878:47274-47293 None:intergenic 20.0%
!!! TTTAAAATCCAAAGATTTGA+AGG + tig0023878:47276-47295 Msa1412290:intron 20.0%
!! TTAAAATCCAAAGATTTGAA+GGG + tig0023878:47277-47296 Msa1412290:intron 20.0%
!!! AACCTCATATATTAATGTTT+TGG + tig0023878:47554-47573 Msa1412290:intron 20.0%
!! ATCCAAAACATTAATATATG+AGG - tig0023878:47559-47578 None:intergenic 20.0%
!! TAATTTGAACTTAAGATCTT+TGG - tig0023878:47637-47656 None:intergenic 20.0%
!! ATAAATGTTTAGGAAACAAA+AGG - tig0023878:47794-47813 None:intergenic 20.0%
!!! TTAACATAAGGATAATGTTT+TGG - tig0023878:48094-48113 None:intergenic 20.0%
!! TTAGATGATATTGTTAACAT+TGG - tig0023878:48444-48463 None:intergenic 20.0%
!!! TATGGGATTTTTTATGATAT+GGG - tig0023878:48480-48499 None:intergenic 20.0%
!!! ATATGGGATTTTTTATGATA+TGG - tig0023878:48481-48500 None:intergenic 20.0%
!! CAAAAAATCAAATTAGCAAA+TGG + tig0023878:48752-48771 Msa1412290:intron 20.0%
!! CTCAAATAATCTTTAGTAAA+TGG - tig0023878:48859-48878 None:intergenic 20.0%
!! TTTACTAAAGATTATTTGAG+TGG + tig0023878:48859-48878 Msa1412290:intron 20.0%
!!! TATCATTTTTTTTGGTCATA+GGG - tig0023878:48966-48985 None:intergenic 20.0%
!!! ACGATAATAATTTTCAACTA+GGG - tig0023878:49830-49849 None:intergenic 20.0%
!!! TACGATAATAATTTTCAACT+AGG - tig0023878:49829-49848 None:intergenic 20.0%
!! CTTTAAATAATTCATTGTAC+AGG - tig0023878:49731-49750 None:intergenic 20.0%
!!! TTTAAGTATTTTTTTCTTGC+TGG + tig0023878:49208-49227 Msa1412290:intron 20.0%
!! AAAATACTCAAAAAAAAGGA+TGG + tig0023878:49437-49456 Msa1412290:intron 20.0%
!!! TTAAGTATTTTTTTTCTTGC+TGG - tig0023878:49617-49636 None:intergenic 20.0%
!! CTTTAAATAATTCATTGTAC+AGG + tig0023878:49731-49750 Msa1412290:intron 20.0%
!!! TACGATAATAATTTTCAACT+AGG + tig0023878:49829-49848 Msa1412290:intron 20.0%
!!! ACGATAATAATTTTCAACTA+GGG + tig0023878:49830-49849 Msa1412290:intron 20.0%
!!! GTATCATATTTTTTTGTCAT+AGG + tig0023878:49859-49878 Msa1412290:intron 20.0%
!!! ATCATATTTTTTTGTCATAG+GGG + tig0023878:49861-49880 Msa1412290:intron 20.0%
!! AAAAATTCAACAGAAACAAT+AGG + tig0023878:50493-50512 Msa1412290:intron 20.0%
!!! TTTGCTTTGAAAAATATTCA+CGG + tig0023878:50583-50602 Msa1412290:intron 20.0%
!!! ACAACTCTATCATAAAATTT+TGG - tig0023878:50654-50673 None:intergenic 20.0%
!!! AAATTTAGAGCCAAAATTTT+AGG + tig0023878:50641-50660 Msa1412290:intron 20.0%
!!! TATTGTATTGATATCGTAAA+AGG + tig0023878:51257-51276 Msa1412290:intron 20.0%
!!! TCTTGACTATTTTTTTTTGA+GGG - tig0023878:51315-51334 None:intergenic 20.0%
!!! CTTTTATTATATAAAGACAG+AGG - tig0023878:51366-51385 None:intergenic 20.0%
!! GTTATTTAATTAATACTCCA+AGG - tig0023878:51406-51425 None:intergenic 20.0%
!! CAAAACAAACTTTATACTAA+TGG + tig0023878:51495-51514 Msa1412290:intron 20.0%
!! AAATTTGCAATCAAAATTGA+TGG + tig0023878:51787-51806 Msa1412290:intron 20.0%
!!! TTTTAATATGGAAATTGTTG+TGG - tig0023878:52065-52084 None:intergenic 20.0%
!! ACTTTAACTAAAAAACAAAG+GGG - tig0023878:52106-52125 None:intergenic 20.0%
!! AGTTAAAGTTAATAGAAAAC+AGG + tig0023878:52117-52136 Msa1412290:intron 20.0%
!! AAAAGTCCAAATTCATATAT+TGG - tig0023878:52681-52700 None:intergenic 20.0%
!! TTTGATATATCTGTTATTGA+TGG + tig0023878:52700-52719 Msa1412290:CDS 20.0%
!!! GTAATTATCGGTTTTAAAAA+CGG - tig0023878:52854-52873 None:intergenic 20.0%
!! AGAATTACAACAGTAATTAT+CGG - tig0023878:52866-52885 None:intergenic 20.0%
!! AAATATTGAGAATAGTTAGT+GGG - tig0023878:52901-52920 None:intergenic 20.0%
!! CAATTTAGTTCAACTTCTAA+TGG + tig0023878:46540-46559 Msa1412290:CDS 25.0%
!!! GTAACAGTTTTAACATCATT+GGG - tig0023878:46621-46640 None:intergenic 25.0%
!!! TGTAACAGTTTTAACATCAT+TGG - tig0023878:46622-46641 None:intergenic 25.0%
!!! TGATTAGATAAAAAAGCACT+TGG + tig0023878:47004-47023 Msa1412290:intron 25.0%
!!! TAAGAGTATCTATAAACTCA+AGG + tig0023878:47213-47232 Msa1412290:intron 25.0%
! CTTACATTAGATAAAAGAGT+CGG + tig0023878:47499-47518 Msa1412290:intron 25.0%
!!! TAATGTTTTGGATGAAGATA+CGG + tig0023878:47566-47585 Msa1412290:intron 25.0%
! AATCTCACAATAAAACGATA+AGG + tig0023878:47594-47613 Msa1412290:intron 25.0%
! ATCTCACAATAAAACGATAA+GGG + tig0023878:47595-47614 Msa1412290:intron 25.0%
! ATTTCCTATATTCCGATATT+TGG + tig0023878:47753-47772 Msa1412290:intron 25.0%
!! AAGTGTAATTTGCCAAATAT+CGG - tig0023878:47768-47787 None:intergenic 25.0%
! AAAGGCAAGAATAAATGTTT+AGG - tig0023878:47804-47823 None:intergenic 25.0%
! AAACAAAATTAGAACCGATT+AGG - tig0023878:47835-47854 None:intergenic 25.0%
! TATTCACGTTCAATTTGAAA+CGG - tig0023878:47898-47917 None:intergenic 25.0%
! ACATCATCATAGTTAACATA+AGG - tig0023878:48106-48125 None:intergenic 25.0%
!!! AAGTATTAATTTTAGGTGTC+TGG - tig0023878:48320-48339 None:intergenic 25.0%
!!! ATTAGTTGATGGTTTTGAAA+AGG - tig0023878:48355-48374 None:intergenic 25.0%
!!! AGTTTTGGAATATTAGTTGA+TGG - tig0023878:48366-48385 None:intergenic 25.0%
!!! TACTGACACTTTTAGAAATT+GGG + tig0023878:48543-48562 Msa1412290:intron 25.0%
! AAAAGCAATCAGTATAACTT+TGG - tig0023878:48651-48670 None:intergenic 25.0%
!!! ATCATTTTTTTTGGTCATAG+GGG - tig0023878:48965-48984 None:intergenic 25.0%
!!! GTATCATTTTTTTTGGTCAT+AGG - tig0023878:48967-48986 None:intergenic 25.0%
!! CGATAATAATTTTCAACTAG+GGG - tig0023878:49831-49850 None:intergenic 25.0%
! TTATGTGTGTACAATTCAAA+TGG + tig0023878:49341-49360 Msa1412290:intron 25.0%
!!! TATTTTTTCAAATGGATGGA+TGG - tig0023878:49423-49442 None:intergenic 25.0%
!!! TGAGTATTTTTTCAAATGGA+TGG - tig0023878:49427-49446 None:intergenic 25.0%
!! CGATAATAATTTTCAACTAG+GGG + tig0023878:49831-49850 Msa1412290:intron 25.0%
! GTTAATTGACACTGTAAAAT+TGG - tig0023878:49971-49990 None:intergenic 25.0%
! TATATGGTGTTTGTGTAAAA+AGG - tig0023878:50073-50092 None:intergenic 25.0%
!! ACGGGTTAAAGATTATTTAT+TGG - tig0023878:50197-50216 None:intergenic 25.0%
!!! GCTACACAAAATAATTTGTT+AGG - tig0023878:50403-50422 None:intergenic 25.0%
!! ACAACTCTATCCTAAAATTT+TGG - tig0023878:50931-50950 None:intergenic 25.0%
!! AAATTGAGAGCCAAAATTTT+AGG + tig0023878:50964-50983 Msa1412290:intron 25.0%
!! ACAACTCTATCCTAAAATTT+TGG - tig0023878:50931-50950 None:intergenic 25.0%
!!! CTCTTGACTATTTTTTTTTG+AGG - tig0023878:51316-51335 None:intergenic 25.0%
! CTCAAAAAAAAATAGTCAAG+AGG + tig0023878:51314-51333 Msa1412290:intron 25.0%
!!! TAAAGCAAAGGGTTTTAATA+TGG - tig0023878:52077-52096 None:intergenic 25.0%
! CTTTAACTAAAAAACAAAGG+GGG - tig0023878:52105-52124 None:intergenic 25.0%
! GATAATTACTGTTGTAATTC+TGG + tig0023878:52865-52884 Msa1412290:CDS 25.0%
! GAAATATTGAGAATAGTTAG+TGG - tig0023878:52902-52921 None:intergenic 25.0%
ATTAAACAGAGAGCCAATAT+AGG - tig0023878:46183-46202 None:intergenic 30.0%
ATTGATATATCCGTGATTGA+TGG + tig0023878:46501-46520 Msa1412290:CDS 30.0%
AATGTTGAAACCATCAATCA+CGG - tig0023878:46514-46533 None:intergenic 30.0%
GAAGTTGAACTAAATTGCAT+TGG - tig0023878:46537-46556 None:intergenic 30.0%
GCAAAAGACAATTCTATAGT+TGG - tig0023878:46658-46677 None:intergenic 30.0%
AAATGATCGAGAAAGCAATA+TGG + tig0023878:46819-46838 Msa1412290:intron 30.0%
GATATTCAATCTCACTTCAA+TGG + tig0023878:47132-47151 Msa1412290:intron 30.0%
ACAAAATCCCTTCAAATCTT+TGG - tig0023878:47287-47306 None:intergenic 30.0%
TTCAAAATTTATATCCGGAG+TGG - tig0023878:47320-47339 None:intergenic 30.0%
TTTGCCAAATATCGGAATAT+AGG - tig0023878:47760-47779 None:intergenic 30.0%
TGAGAAGTTTGGTTAAAATG+CGG - tig0023878:47864-47883 None:intergenic 30.0%
! ATTCACGTTCAATTTGAAAC+GGG - tig0023878:47897-47916 None:intergenic 30.0%
!! AGTTTACTCCATTTTAGTAG+TGG - tig0023878:47961-47980 None:intergenic 30.0%
! GAGAGTTATTGCGTTAATTT+TGG - tig0023878:48184-48203 None:intergenic 30.0%
!! TATGATATGGGATTTTAGCA+TGG - tig0023878:48468-48487 None:intergenic 30.0%
!! CTACTGACACTTTTAGAAAT+TGG + tig0023878:48542-48561 Msa1412290:intron 30.0%
!! ACTGACACTTTTAGAAATTG+GGG + tig0023878:48544-48563 Msa1412290:intron 30.0%
AGCAAATGGATAATCATTAC+AGG + tig0023878:48766-48785 Msa1412290:intron 30.0%
!!! GGCAGATGTATCATTTTTTT+TGG - tig0023878:48974-48993 None:intergenic 30.0%
CCATTTCAAATGAAGAACAA+GGG - tig0023878:49802-49821 None:intergenic 30.0%
! CTCTTGTTCTTACTTTGAAA+TGG + tig0023878:49119-49138 Msa1412290:intron 30.0%
CAATATGCAAACACAATGAA+TGG - tig0023878:49392-49411 None:intergenic 30.0%
CATTCATTGTGTTTGCATAT+TGG + tig0023878:49390-49409 Msa1412290:intron 30.0%
CAGGATGCAATAATTATCAA+AGG - tig0023878:49516-49535 None:intergenic 30.0%
! CCATTTTAGATATGGAACAT+GGG + tig0023878:49658-49677 Msa1412290:intron 30.0%
! CATTTTAGATATGGAACATG+GGG + tig0023878:49659-49678 Msa1412290:intron 30.0%
! CTCTTGTTCTTACTTTGAAA+TGG - tig0023878:49119-49138 None:intergenic 30.0%
CCATTTCAAATGAAGAACAA+GGG + tig0023878:49802-49821 Msa1412290:intron 30.0%
!! AAAATTGGTGCTACACATTA+CGG - tig0023878:49956-49975 None:intergenic 30.0%
AGTTGTTGCAAACCTAATAA+GGG + tig0023878:50668-50687 Msa1412290:intron 30.0%
AGTTGTTGCAAACCTAATAA+GGG + tig0023878:50668-50687 Msa1412290:intron 30.0%
!!! TCTTTCCCTTTTGAGTTTTA+GGG + tig0023878:51095-51114 Msa1412290:intron 30.0%
AGTAACCCTAAAACTCAAAA+GGG - tig0023878:51103-51122 None:intergenic 30.0%
TAGTAACCCTAAAACTCAAA+AGG - tig0023878:51104-51123 None:intergenic 30.0%
!! AGAGGAAATCTATTTTGAGA+CGG + tig0023878:51332-51351 Msa1412290:intron 30.0%
ATTCCTTAATCATTGTCACT+AGG + tig0023878:51518-51537 Msa1412290:intron 30.0%
TTCCTTAATCATTGTCACTA+GGG + tig0023878:51519-51538 Msa1412290:intron 30.0%
! AAAAATTGGGATTTTGCTTC+AGG + tig0023878:51668-51687 Msa1412290:intron 30.0%
AAAATCGCAACTAAAATCGA+AGG + tig0023878:51721-51740 Msa1412290:intron 30.0%
! AGTCGCAAAATTCTGAATTT+TGG + tig0023878:51962-51981 Msa1412290:intron 30.0%
! GTCGCAAAATTCTGAATTTT+GGG + tig0023878:51963-51982 Msa1412290:intron 30.0%
!!! TCTGAATTTTGGGATTTAAG+TGG + tig0023878:51973-51992 Msa1412290:intron 30.0%
!!! CTGAATTTTGGGATTTAAGT+GGG + tig0023878:51974-51993 Msa1412290:intron 30.0%
TTCTTTGATTATAGGACCAT+AGG - tig0023878:52155-52174 None:intergenic 30.0%
ATAGAACATTATTGAAACGG+TGG - tig0023878:52258-52277 None:intergenic 30.0%
ACCGTTTCAATAATGTTCTA+TGG + tig0023878:52257-52276 Msa1412290:intron 30.0%
GCCATAGAACATTATTGAAA+CGG - tig0023878:52261-52280 None:intergenic 30.0%
!! TTGTTTTGTGAGTAGAAAGT+GGG - tig0023878:52307-52326 None:intergenic 30.0%
!!! TTTGTTTTGTGAGTAGAAAG+TGG - tig0023878:52308-52327 None:intergenic 30.0%
GAATTTAGTCCAACTTCTAA+TGG + tig0023878:52739-52758 Msa1412290:CDS 30.0%
TGTTGTAATTCTGGTAATTG+TGG + tig0023878:52874-52893 Msa1412290:CDS 30.0%
TAATATCTACACAAGCAGCA+AGG + tig0023878:46199-46218 Msa1412290:CDS 35.0%
CTTGCAGAATACACACTTAA+CGG + tig0023878:46459-46478 Msa1412290:CDS 35.0%
ACTTAACGGTGGAAACAATT+TGG + tig0023878:46473-46492 Msa1412290:CDS 35.0%
ACTAGGTTCAACGATTTCAA+GGG - tig0023878:46680-46699 None:intergenic 35.0%
TGTCTGCACATTAATTGTGT+AGG + tig0023878:46745-46764 Msa1412290:intron 35.0%
TGCTATGATGCACATAAGAA+AGG - tig0023878:46854-46873 None:intergenic 35.0%
TGTGCATCATAGCATTATCT+TGG + tig0023878:46860-46879 Msa1412290:intron 35.0%
GGGAGTTGAATCATTACATT+GGG - tig0023878:47168-47187 None:intergenic 35.0%
TGGGAGTTGAATCATTACAT+TGG - tig0023878:47169-47188 None:intergenic 35.0%
ATCATCGTTAGACTATGAGT+GGG - tig0023878:47188-47207 None:intergenic 35.0%
TATCATCGTTAGACTATGAG+TGG - tig0023878:47189-47208 None:intergenic 35.0%
GAGTATCTATAAACTCAAGG+TGG + tig0023878:47216-47235 Msa1412290:intron 35.0%
TGTATGAGCAATTGGAAGAT+GGG - tig0023878:47250-47269 None:intergenic 35.0%
ATGTATGAGCAATTGGAAGA+TGG - tig0023878:47251-47270 None:intergenic 35.0%
AAACAGGATGTATGAGCAAT+TGG - tig0023878:47258-47277 None:intergenic 35.0%
!!! TTGTCTGTTTTTTACCACTC+CGG + tig0023878:47303-47322 Msa1412290:intron 35.0%
! ACCTCAATGCGTTAAAGTTT+TGG + tig0023878:47372-47391 Msa1412290:intron 35.0%
TCCAAAACTTTAACGCATTG+AGG - tig0023878:47376-47395 None:intergenic 35.0%
!!! TGCGTTAAAGTTTTGGATGA+AGG + tig0023878:47379-47398 Msa1412290:intron 35.0%
CTATAAAGGAGAGTCTCATT+AGG - tig0023878:47435-47454 None:intergenic 35.0%
ATACCACTATTGGGCTATAA+AGG - tig0023878:47449-47468 None:intergenic 35.0%
! GCCTTTTCTAATGTCCTAAT+CGG + tig0023878:47818-47837 Msa1412290:intron 35.0%
ACCGATTAGGACATTAGAAA+AGG - tig0023878:47822-47841 None:intergenic 35.0%
GAGAAGTTTGGTTAAAATGC+GGG - tig0023878:47863-47882 None:intergenic 35.0%
! TTCACGTTCAATTTGAAACG+GGG - tig0023878:47896-47915 None:intergenic 35.0%
! GCACTTTTCCACTACTAAAA+TGG + tig0023878:47950-47969 Msa1412290:intron 35.0%
ACACTCTCATGAACTCAAAT+AGG - tig0023878:47984-48003 None:intergenic 35.0%
ATTTGACGTGGCAAAAAATC+AGG - tig0023878:48131-48150 None:intergenic 35.0%
! ACGCAATAACTCTCATCTTT+TGG + tig0023878:48190-48209 Msa1412290:intron 35.0%
TTGGATATGTTGATGCTTGA+TGG - tig0023878:48269-48288 None:intergenic 35.0%
!!! TTGGGAGCGTTTTTTTTTGT+TGG - tig0023878:48288-48307 None:intergenic 35.0%
GGTGTCTGGATATGAAATTT+GGG - tig0023878:48306-48325 None:intergenic 35.0%
AGGTGTCTGGATATGAAATT+TGG - tig0023878:48307-48326 None:intergenic 35.0%
CCCTTGTTCTTCATTTGAAA+TGG + tig0023878:49021-49040 Msa1412290:intron 35.0%
GCCATTTCAAATGAAGAACA+AGG - tig0023878:49801-49820 None:intergenic 35.0%
! CATTTTAGATATGGAACACG+GGG - tig0023878:49167-49186 None:intergenic 35.0%
! CCATTTTAGATATGGAACAC+GGG - tig0023878:49168-49187 None:intergenic 35.0%
!! GCCATTTTAGATATGGAACA+CGG - tig0023878:49657-49676 None:intergenic 35.0%
AACACAATGAATGGATGCAT+TGG - tig0023878:49383-49402 None:intergenic 35.0%
TTGTGTTTGCATAGCGAATA+TGG + tig0023878:49464-49483 Msa1412290:intron 35.0%
TTGTGTTTGCATAGCGAATA+TGG + tig0023878:49464-49483 Msa1412290:intron 35.0%
!! GCCATTTTAGATATGGAACA+TGG + tig0023878:49657-49676 Msa1412290:intron 35.0%
CCCATGTTCCATATCTAAAA+TGG - tig0023878:49661-49680 None:intergenic 35.0%
GCCATTTCAAATGAAGAACA+AGG + tig0023878:49801-49820 Msa1412290:intron 35.0%
CCCTTGTTCTTCATTTGAAA+TGG - tig0023878:49021-49040 None:intergenic 35.0%
AGATGACTAAGATGTGTTGT+CGG + tig0023878:50041-50060 Msa1412290:intron 35.0%
ATCTTTAACCCGTAAGATCA+TGG + tig0023878:50204-50223 Msa1412290:intron 35.0%
TCTTTAACCCGTAAGATCAT+GGG + tig0023878:50205-50224 Msa1412290:intron 35.0%
TTGATCAACCCATGATCTTA+CGG - tig0023878:50216-50235 None:intergenic 35.0%
GAGTTGTTGCAAACCTAATA+AGG + tig0023878:50667-50686 Msa1412290:intron 35.0%
ACCTAATAAGGGATTAATCG+AGG + tig0023878:50679-50698 Msa1412290:intron 35.0%
CCTAATAAGGGATTAATCGA+GGG + tig0023878:50680-50699 Msa1412290:intron 35.0%
GATTAATCGAGGGACAAATT+AGG + tig0023878:50690-50709 Msa1412290:intron 35.0%
GAGTTGTTGCAAACCTAATA+AGG + tig0023878:50667-50686 Msa1412290:intron 35.0%
CAAACCTAATAAGGGATTAG+TGG + tig0023878:50999-51018 Msa1412290:intron 35.0%
AGGATAATATTACTCCCTCT+CGG + tig0023878:51072-51091 Msa1412290:intron 35.0%
!!! GTCTTTCCCTTTTGAGTTTT+AGG + tig0023878:51094-51113 Msa1412290:intron 35.0%
AGAATACTAATGAGTGTCCT+TGG + tig0023878:51386-51405 Msa1412290:intron 35.0%
ACTCCAAGGTTGTCAAAAAT+TGG + tig0023878:51654-51673 Msa1412290:intron 35.0%
CTCCAAGGTTGTCAAAAATT+GGG + tig0023878:51655-51674 Msa1412290:intron 35.0%
! ATCCCAATTTTTGACAACCT+TGG - tig0023878:51660-51679 None:intergenic 35.0%
!! TTTACTTGCTCGTTTTTCGT+CGG + tig0023878:52025-52044 Msa1412290:intron 35.0%
ACGGCATCTTCTTTGATTAT+AGG - tig0023878:52163-52182 None:intergenic 35.0%
TTTGTCTTGCAGTCTATACA+CGG - tig0023878:52182-52201 None:intergenic 35.0%
! CTATGGCCTTTTATAAACTG+AGG + tig0023878:52274-52293 Msa1412290:intron 35.0%
GAGTATTCTGCTAGTGTATT+TGG - tig0023878:52652-52671 None:intergenic 35.0%
GAAGTTGGACTAAATTCCAT+AGG - tig0023878:52736-52755 None:intergenic 35.0%
!!! CCTTGAGTTTTAAGCTCATT+AGG - tig0023878:52811-52830 None:intergenic 35.0%
CCTAATGAGCTTAAAACTCA+AGG + tig0023878:52808-52827 Msa1412290:CDS 35.0%
AATGAGCTTAAAACTCAAGG+TGG + tig0023878:52811-52830 Msa1412290:CDS 35.0%
TTGGGTAACTATAAGCATCT+GGG - tig0023878:52936-52955 None:intergenic 35.0%
TTTGGGTAACTATAAGCATC+TGG - tig0023878:52937-52956 None:intergenic 35.0%
ACAAGTCTATTCACTTGCAA+AGG + tig0023878:52967-52986 Msa1412290:CDS 35.0%
GCAAAAGACAACCTTGTAAT+TGG - tig0023878:52998-53017 None:intergenic 35.0%
AAGTGTGTATTCTGCAAGTG+TGG - tig0023878:46457-46476 None:intergenic 40.0%
! CAACAAAGTACTAACCTGCA+GGG + tig0023878:46566-46585 Msa1412290:CDS 40.0%
! TTCTATAGTTGGTACCAGCA+GGG - tig0023878:46647-46666 None:intergenic 40.0%
! ATTCTATAGTTGGTACCAGC+AGG - tig0023878:46648-46667 None:intergenic 40.0%
CACTAGGTTCAACGATTTCA+AGG - tig0023878:46681-46700 None:intergenic 40.0%
TCTGTTTGTTTCCCATGCTT+GGG + tig0023878:46918-46937 Msa1412290:intron 40.0%
ATGAAGCATATCCCAAGCAT+GGG - tig0023878:46932-46951 None:intergenic 40.0%
AAAGGAGAGTCTCATTAGGT+TGG - tig0023878:47431-47450 None:intergenic 40.0%
TCTCCTTTATAGCCCAATAG+TGG + tig0023878:47443-47462 Msa1412290:intron 40.0%
AAGGGTCTCATACCACTATT+GGG - tig0023878:47458-47477 None:intergenic 40.0%
TAAGGGTCTCATACCACTAT+TGG - tig0023878:47459-47478 None:intergenic 40.0%
GGAGACTAAAGTGAGAAGTT+TGG - tig0023878:47875-47894 None:intergenic 40.0%
ATTGCAGTAAGCATTTGACG+TGG - tig0023878:48143-48162 None:intergenic 40.0%
GCTTACTGCAATATCCACAT+AGG + tig0023878:48151-48170 Msa1412290:intron 40.0%
GATATGTTGATGCTTGATGG+AGG - tig0023878:48266-48285 None:intergenic 40.0%
AGTGTCAGTAGTTATCAGAC+CGG - tig0023878:48533-48552 None:intergenic 40.0%
CTTCACTAAAGTCCATCATG+AGG + tig0023878:48816-48835 Msa1412290:intron 40.0%
CATTGCTTTCAACCTCATGA+TGG - tig0023878:48831-48850 None:intergenic 40.0%
!!! TTTTTTTTGGTCATAGGGGC+AGG - tig0023878:48961-48980 None:intergenic 40.0%
CCCGTGTTCCATATCTAAAA+TGG + tig0023878:49165-49184 Msa1412290:intron 40.0%
!! CATGCTCGCCATTTTAGATA+TGG - tig0023878:49650-49669 None:intergenic 40.0%
TTCTTGCTGGTCCTTTCAAA+TGG + tig0023878:49221-49240 Msa1412290:intron 40.0%
TTAGGCAAAAGAGGAATGCT+TGG + tig0023878:49300-49319 Msa1412290:intron 40.0%
TAGGCAAAAGAGGAATGCTT+GGG + tig0023878:49301-49320 Msa1412290:intron 40.0%
GCTATGCAAACACAATGTAC+AGG - tig0023878:49535-49554 None:intergenic 40.0%
TTCTTGCTGGTCCTTTCAAA+TGG - tig0023878:49221-49240 None:intergenic 40.0%
!! CATGCTCGCCATTTTAGATA+TGG + tig0023878:49650-49669 Msa1412290:intron 40.0%
TGATCAACCCATGATCTTAC+GGG - tig0023878:50215-50234 None:intergenic 40.0%
GCCTAATTTCCATGCAAACT+CGG - tig0023878:50425-50444 None:intergenic 40.0%
CCCTCGATTAATCCCTTATT+AGG - tig0023878:50683-50702 None:intergenic 40.0%
! ACCTAATAAGGGATTAGTGG+AGG + tig0023878:51002-51021 Msa1412290:intron 40.0%
! CCTAATAAGGGATTAGTGGA+GGG + tig0023878:51003-51022 Msa1412290:intron 40.0%
TGCCCTAGTGACAATGATTA+AGG - tig0023878:51524-51543 None:intergenic 40.0%
GTTTAGTGTAAGTGACCTCA+CGG - tig0023878:51619-51638 None:intergenic 40.0%
AACCTTGGAGTGAATACCTT+GGG - tig0023878:51645-51664 None:intergenic 40.0%
! CAATGGATTTGAGTCGTTGA+AGG + tig0023878:51932-51951 Msa1412290:intron 40.0%
AGGGGGTTACTTAAAGCAAA+GGG - tig0023878:52088-52107 None:intergenic 40.0%
AAGGGGGTTACTTAAAGCAA+AGG - tig0023878:52089-52108 None:intergenic 40.0%
GTGGTGCCTCAGTTTATAAA+AGG - tig0023878:52283-52302 None:intergenic 40.0%
TCTCTCTTTCACCTATACAC+AGG + tig0023878:52393-52412 Msa1412290:CDS 40.0%
ACAATTGCCCTAACACTGTA+TGG + tig0023878:52437-52456 Msa1412290:CDS 40.0%
CAATTGCCCTAACACTGTAT+GGG + tig0023878:52438-52457 Msa1412290:CDS 40.0%
!! TGATGGATTCAACGTTCCTA+TGG + tig0023878:52717-52736 Msa1412290:CDS 40.0%
TACACGTGGCATAAGATGTA+CGG + tig0023878:52765-52784 Msa1412290:CDS 40.0%
AGGACATTGTCCGATGATAT+CGG - tig0023878:52791-52810 None:intergenic 40.0%
! GACTTGTCGCATCATCTTTT+GGG - tig0023878:52954-52973 None:intergenic 40.0%
! AGACTTGTCGCATCATCTTT+TGG - tig0023878:52955-52974 None:intergenic 40.0%
AGTCTATTCACTTGCAAAGG+TGG + tig0023878:52970-52989 Msa1412290:CDS 40.0%
CAAAGGTGGAACCAATTACA+AGG + tig0023878:52984-53003 Msa1412290:CDS 40.0%
TGAACCGTCAAATCTGCAAC+CGG - tig0023878:46364-46383 None:intergenic 45.0%
AGTTGTCAAACCGGTGATTG+CGG + tig0023878:46393-46412 Msa1412290:intron 45.0%
GTGTATTCTGCAAGTGTGGT+CGG - tig0023878:46453-46472 None:intergenic 45.0%
GCAGAATACACACTTAACGG+TGG + tig0023878:46462-46481 Msa1412290:CDS 45.0%
! GCAACAAAGTACTAACCTGC+AGG + tig0023878:46565-46584 Msa1412290:CDS 45.0%
!! TGGGTTGATGATAAGCGTCA+GGG - tig0023878:46602-46621 None:intergenic 45.0%
!! TTGGGTTGATGATAAGCGTC+AGG - tig0023878:46603-46622 None:intergenic 45.0%
AAAACTGTTACATGCCCTGC+TGG + tig0023878:46630-46649 Msa1412290:CDS 45.0%
GTCTGTTTGTTTCCCATGCT+TGG + tig0023878:46917-46936 Msa1412290:intron 45.0%
GATGAAGCATATCCCAAGCA+TGG - tig0023878:46933-46952 None:intergenic 45.0%
GTATGAGACCCTTAGTTCGA+TGG + tig0023878:47465-47484 Msa1412290:intron 45.0%
CACAATTGACACATGTCCCT+AGG + tig0023878:48014-48033 Msa1412290:intron 45.0%
!!! ATTTTGGTGTCTCGCCTATG+TGG - tig0023878:48168-48187 None:intergenic 45.0%
TGCTTGATGGAGGTTTGAGA+GGG - tig0023878:48256-48275 None:intergenic 45.0%
ATGCTTGATGGAGGTTTGAG+AGG - tig0023878:48257-48276 None:intergenic 45.0%
TAGCTAGTCAAAGACGTGTC+AGG + tig0023878:48908-48927 Msa1412290:intron 45.0%
TTGCATGCTCGCCATTTGAA+AGG - tig0023878:49590-49609 None:intergenic 45.0%
GCCATATTCGCTGCACATTT+AGG + tig0023878:49282-49301 Msa1412290:intron 45.0%
GCCTAAATGTGCAGCGAATA+TGG - tig0023878:49286-49305 None:intergenic 45.0%
GCTGCACATTTAGGCAAAAG+AGG + tig0023878:49291-49310 Msa1412290:intron 45.0%
!! GGAATGCTTGGGCATTGAAA+TGG + tig0023878:49312-49331 Msa1412290:intron 45.0%
! TGAATGGATGCATTGGCACA+TGG - tig0023878:49376-49395 None:intergenic 45.0%
TTGCATGCTCGCCATTTGAA+AGG + tig0023878:49590-49609 Msa1412290:intron 45.0%
TTTGTGTAGCCGAGTTTGCA+TGG + tig0023878:50413-50432 Msa1412290:intron 45.0%
GCCGAGTTTGCATGGAAATT+AGG + tig0023878:50421-50440 Msa1412290:intron 45.0%
CCCTCCACTAATCCCTTATT+AGG - tig0023878:51006-51025 None:intergenic 45.0%
TCAAAAGGGAAAGACCGAGA+GGG - tig0023878:51089-51108 None:intergenic 45.0%
AAATTACACTGACCTCCGTG+AGG + tig0023878:51601-51620 Msa1412290:intron 45.0%
ACTTACACTAAACTCCCCCA+AGG + tig0023878:51626-51645 Msa1412290:intron 45.0%
ACCTTGGAGTGAATACCTTG+GGG - tig0023878:51644-51663 None:intergenic 45.0%
CAACCTTGGAGTGAATACCT+TGG - tig0023878:51646-51665 None:intergenic 45.0%
CAGGTGCGATATTACTCCTA+TGG + tig0023878:52136-52155 Msa1412290:intron 45.0%
TTGTGAGTAGAAAGTGGGAG+TGG - tig0023878:52302-52321 None:intergenic 45.0%
GAATGTTGCTGCCTGTGTAT+AGG - tig0023878:52407-52426 None:intergenic 45.0%
AACTAAACCGCGGCGAAAAA+TGG + tig0023878:52488-52507 Msa1412290:CDS 45.0%
AAGCTGAACTGCCAAGCTTA+CGG + tig0023878:52619-52638 Msa1412290:CDS 45.0%
CGTGTACAGCCATTAGAAGT+TGG - tig0023878:52751-52770 None:intergenic 45.0%
ACTTCTAATGGCTGTACACG+TGG + tig0023878:52751-52770 Msa1412290:CDS 45.0%
AGATGTACGGCCGATATCAT+CGG + tig0023878:52778-52797 Msa1412290:CDS 45.0%
!! ATAAAAACAAAAAAATTAAT+AGG + tig0023878:51576-51595 Msa1412290:intron 5.0%
!! TAAAAACAAAAAAATTAATA+GGG + tig0023878:51577-51596 Msa1412290:intron 5.0%
AGTTGAACTCGGGCCAAACA+TGG + tig0023878:46289-46308 Msa1412290:CDS 50.0%
GTTGAACTCGGGCCAAACAT+GGG + tig0023878:46290-46309 Msa1412290:CDS 50.0%
AACCTCAGCTGCCCGAATTT+GGG + tig0023878:46332-46351 Msa1412290:CDS 50.0%
CGTCAAATCTGCAACCGGTT+CGG - tig0023878:46359-46378 None:intergenic 50.0%
CGAACCGGTTGCAGATTTGA+CGG + tig0023878:46357-46376 Msa1412290:CDS 50.0%
GGTTGCAGATTTGACGGTTC+AGG + tig0023878:46363-46382 Msa1412290:CDS 50.0%
!! CACCGGTTTGACAACTACCA+CGG - tig0023878:46389-46408 None:intergenic 50.0%
TATTCTGCAAGTGTGGTCGG+AGG - tig0023878:46450-46469 None:intergenic 50.0%
AGGGCAATTAGAATCCCTGC+AGG - tig0023878:46583-46602 None:intergenic 50.0%
TTGATGGAGGTTTGAGAGGG+AGG - tig0023878:48253-48272 None:intergenic 50.0%
CGTGTCAGGTACGTAGTAAG+AGG + tig0023878:48922-48941 Msa1412290:intron 50.0%
AACTTCCTCTGCAAGCTTGC+AGG + tig0023878:49064-49083 Msa1412290:intron 50.0%
AAAAGCCTGCAAGCTTGCAG+AGG - tig0023878:49754-49773 None:intergenic 50.0%
AAAAGCCTGCAAGCTTGCAG+AGG + tig0023878:49754-49773 Msa1412290:intron 50.0%
AACTTCCTCTGCAAGCTTGC+AGG - tig0023878:49064-49083 None:intergenic 50.0%
CTCAAAAGGGAAAGACCGAG+AGG - tig0023878:51090-51109 None:intergenic 50.0%
TAGTGTAAGTGACCTCACGG+AGG - tig0023878:51616-51635 None:intergenic 50.0%
CCTTGGAGTGAATACCTTGG+GGG - tig0023878:51643-51662 None:intergenic 50.0%
! GGGATTTTGCTTCAGGTCGA+AGG + tig0023878:51675-51694 Msa1412290:intron 50.0%
!! TGATGGTCCATTTTTCGCCG+CGG - tig0023878:52498-52517 None:intergenic 50.0%
AACCACATCGGCCCGTATTT+GGG + tig0023878:52531-52550 Msa1412290:CDS 50.0%
! AACCGGTTCTGGCCCAAATA+CGG - tig0023878:52546-52565 None:intergenic 50.0%
AGAACCGGTTGTAGCTTCGA+CGG + tig0023878:52556-52575 Msa1412290:CDS 50.0%
TGAACCGTCGAAGCTACAAC+CGG - tig0023878:52563-52582 None:intergenic 50.0%
GTTGTAGCTTCGACGGTTCA+GGG + tig0023878:52563-52582 Msa1412290:CDS 50.0%
TTGGAGCTGTACCGTAAGCT+TGG - tig0023878:52633-52652 None:intergenic 50.0%
GAACCTCAGCTGCCCGAATT+TGG + tig0023878:46331-46350 Msa1412290:CDS 55.0%
ACCTCAGCTGCCCGAATTTG+GGG + tig0023878:46333-46352 Msa1412290:CDS 55.0%
!! AACCGGTTCGGCCCCAAATT+CGG - tig0023878:46347-46366 None:intergenic 55.0%
AGATTTGACGGTTCAGGCCG+TGG + tig0023878:46369-46388 Msa1412290:CDS 55.0%
GGCCGTGGTAGTTGTCAAAC+CGG + tig0023878:46384-46403 Msa1412290:intron 55.0%
TGTCAAACCGGTGATTGCGG+TGG + tig0023878:46396-46415 Msa1412290:intron 55.0%
ACCGGATACGCTGCAACTGA+GGG - tig0023878:46424-46443 None:intergenic 55.0%
TACCGGATACGCTGCAACTG+AGG - tig0023878:46425-46444 None:intergenic 55.0%
AAGTGTGGTCGGAGGTCTAC+CGG - tig0023878:46442-46461 None:intergenic 55.0%
GACCCTTAGTTCGATGGACG+CGG + tig0023878:47471-47490 Msa1412290:intron 55.0%
CTCCGCGTCCATCGAACTAA+GGG - tig0023878:47476-47495 None:intergenic 55.0%
TCTCCGCGTCCATCGAACTA+AGG - tig0023878:47477-47496 None:intergenic 55.0%
ATGGAGGTTTGAGAGGGAGG+AGG - tig0023878:48250-48269 None:intergenic 55.0%
! CCCCCAAGGTATTCACTCCA+AGG + tig0023878:51640-51659 Msa1412290:intron 55.0%
CTGCGGCCCATACAGTGTTA+GGG - tig0023878:52447-52466 None:intergenic 55.0%
TTTAGTTGCTTACCGCCGCC+TGG - tig0023878:52475-52494 None:intergenic 55.0%
GGCGGTAAGCAACTAAACCG+CGG + tig0023878:52478-52497 Msa1412290:CDS 55.0%
TGGACCATCAACGTAGCTGC+AGG + tig0023878:52508-52527 Msa1412290:CDS 55.0%
GGTTCCTGCAGCTACGTTGA+TGG - tig0023878:52515-52534 None:intergenic 55.0%
CGTAGCTGCAGGAACCACAT+CGG + tig0023878:52519-52538 Msa1412290:CDS 55.0%
GAACCACATCGGCCCGTATT+TGG + tig0023878:52530-52549 Msa1412290:CDS 55.0%
! ACCGGTTCTGGCCCAAATAC+GGG - tig0023878:52545-52564 None:intergenic 55.0%
! GTCGAAGCTACAACCGGTTC+TGG - tig0023878:52557-52576 None:intergenic 55.0%
GGTTGTAGCTTCGACGGTTC+AGG + tig0023878:52562-52581 Msa1412290:CDS 55.0%
AGCTTCGACGGTTCAGGGAA+CGG + tig0023878:52568-52587 Msa1412290:CDS 55.0%
ACCGATGCTCCTACACCGTG+TGG + tig0023878:46235-46254 Msa1412290:CDS 60.0%
! GCCACACGGTGTAGGAGCAT+CGG - tig0023878:46239-46258 None:intergenic 60.0%
TGGCGGTCGGCAGTTGAACT+CGG + tig0023878:46278-46297 Msa1412290:CDS 60.0%
! GGACGTCTAGGGCCCATGTT+TGG - tig0023878:46305-46324 None:intergenic 60.0%
GGTTCCTGCTGGGACGTCTA+GGG - tig0023878:46316-46335 None:intergenic 60.0%
AGGTTCCTGCTGGGACGTCT+AGG - tig0023878:46317-46336 None:intergenic 60.0%
!! ACCGGTTCGGCCCCAAATTC+GGG - tig0023878:46346-46365 None:intergenic 60.0%
GCCCTCAGTTGCAGCGTATC+CGG + tig0023878:46420-46439 Msa1412290:intron 60.0%
GCTGCGGCCCATACAGTGTT+AGG - tig0023878:52448-52467 None:intergenic 60.0%
GCCCGTATTTGGGCCAGAAC+CGG + tig0023878:52541-52560 Msa1412290:CDS 60.0%
GGGAACGGTCGATGCCAAAC+CGG + tig0023878:52583-52602 Msa1412290:CDS 60.0%
CGATGCCAAACCGGTGACTG+CGG + tig0023878:52592-52611 Msa1412290:CDS 60.0%
TCCTACACCGTGTGGCCAGC+AGG + tig0023878:46243-46262 Msa1412290:CDS 65.0%
GGGAATGCCTGCTGGCCACA+CGG - tig0023878:46253-46272 None:intergenic 65.0%
TGTGGCCAGCAGGCATTCCC+AGG + tig0023878:46253-46272 Msa1412290:CDS 65.0%
GTGGCCAGCAGGCATTCCCA+GGG + tig0023878:46254-46273 Msa1412290:CDS 65.0%
TGGCCAGCAGGCATTCCCAG+GGG + tig0023878:46255-46274 Msa1412290:CDS 65.0%
GGCGGTCGGCAGTTGAACTC+GGG + tig0023878:46279-46298 Msa1412290:CDS 65.0%
GGGCAGCTGAGGTTCCTGCT+GGG - tig0023878:46326-46345 None:intergenic 65.0%
GCCCCAAATTCGGGCAGCTG+AGG - tig0023878:46337-46356 None:intergenic 65.0%
! GCCCGAATTTGGGGCCGAAC+CGG + tig0023878:46342-46361 Msa1412290:CDS 65.0%
GAGGGCTCCACCGCAATCAC+CGG - tig0023878:46406-46425 None:intergenic 65.0%
AGAAGACCCGTGCGTCGCAC+GGG - tig0023878:50159-50178 None:intergenic 65.0%
GAGAAGACCCGTGCGTCGCA+CGG - tig0023878:50160-50179 None:intergenic 65.0%
GTATGGGCCGCAGCTGTACC+AGG + tig0023878:52454-52473 Msa1412290:CDS 65.0%
GGCCCAAATACGGGCCGATG+TGG - tig0023878:52536-52555 None:intergenic 65.0%
TGCCAAACCGGTGACTGCGG+CGG + tig0023878:52595-52614 Msa1412290:CDS 65.0%
! TACCGCCGCAGTCACCGGTT+TGG - tig0023878:52600-52619 None:intergenic 65.0%
CAGCTTACCGCCGCAGTCAC+CGG - tig0023878:52605-52624 None:intergenic 65.0%
GCCTGCTGGCCACACGGTGT+AGG - tig0023878:46247-46266 None:intergenic 70.0%
CCACCCCTGGGAATGCCTGC+TGG - tig0023878:46261-46280 None:intergenic 70.0%
CCAGCAGGCATTCCCAGGGG+TGG + tig0023878:46258-46277 Msa1412290:CDS 70.0%
GCAGGCATTCCCAGGGGTGG+CGG + tig0023878:46261-46280 Msa1412290:CDS 70.0%
! GCATTCCCAGGGGTGGCGGT+CGG + tig0023878:46265-46284 Msa1412290:CDS 70.0%
AACTGCCGACCGCCACCCCT+GGG - tig0023878:46273-46292 None:intergenic 70.0%
TGGGCCCTAGACGTCCCAGC+AGG + tig0023878:46309-46328 Msa1412290:CDS 70.0%
CGGGCAGCTGAGGTTCCTGC+TGG - tig0023878:46327-46346 None:intergenic 70.0%
TGGGCCGCAGCTGTACCAGG+CGG + tig0023878:52457-52476 Msa1412290:CDS 70.0%
ACCGCCGCCTGGTACAGCTG+CGG - tig0023878:52464-52483 None:intergenic 70.0%
CAACTGCCGACCGCCACCCC+TGG - tig0023878:46274-46293 None:intergenic 75.0%
GCCGCAGCTGTACCAGGCGG+CGG + tig0023878:52460-52479 Msa1412290:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0023878 gene 46153 53023 46153 ID=Msa1412290;Name=Msa1412290
tig0023878 mRNA 46153 53023 46153 ID=Msa1412290-mRNA-1;Parent=Msa1412290;Name=Msa1412290-mRNA-1;_AED=0.07;_eAED=0.09;_QI=0|0|0|1|0|0|3|0|398
tig0023878 exon 46153 46390 46153 ID=Msa1412290-mRNA-1:exon:20534;Parent=Msa1412290-mRNA-1
tig0023878 exon 46421 46651 46421 ID=Msa1412290-mRNA-1:exon:20535;Parent=Msa1412290-mRNA-1
tig0023878 exon 52296 53023 52296 ID=Msa1412290-mRNA-1:exon:20536;Parent=Msa1412290-mRNA-1
tig0023878 CDS 46153 46390 46153 ID=Msa1412290-mRNA-1:cds;Parent=Msa1412290-mRNA-1
tig0023878 CDS 46421 46651 46421 ID=Msa1412290-mRNA-1:cds;Parent=Msa1412290-mRNA-1
tig0023878 CDS 52296 53023 52296 ID=Msa1412290-mRNA-1:cds;Parent=Msa1412290-mRNA-1
Gene Sequence

>Msa1412290

ATGTCTCTCATAAAAATATTATTATTGCCTATATTGGCTCTCTGTTTAATATCTACACAAGCAGCAAGGTTCGACATAGTAAACCGATGCTCCTACACCGTGTGGCCAGCAGGCATTCCCAGGGGTGGCGGTCGGCAGTTGAACTCGGGCCAAACATGGGCCCTAGACGTCCCAGCAGGAACCTCAGCTGCCCGAATTTGGGGCCGAACCGGTTGCAGATTTGACGGTTCAGGCCGTGCCCTCAGTTGCAGCGTATCCGGTAGACCTCCGACCACACTTGCAGAATACACACTTAACGGTGGAAACAATTTGGATTACATTGATATATCCGTGATTGATGGTTTCAACATTCCAATGCAATTTAGTTCAACTTCTAATGGATGCAACAAAGTACTAACCTGCAGGGATTCTAATTGCCCTGACGCTTATCATCAACCCAATGATGTTAAAACTGTTACATGCCCTGCTGGCACCACTCCCACTTTCTACTCACAAAACAAAACAGAGTACACTGTCTTTGTCAAAATGAGTTCTCTCATAAAAACATTTCTATTTTCTCTCATTACTCTCTCTTTCACCTATACACAGGCAGCAACATTCGACATCACAAACAATTGCCCTAACACTGTATGGGCCGCAGCTGTACCAGGCGGCGGTAAGCAACTAAACCGCGGCGAAAAATGGACCATCAACGTAGCTGCAGGAACCACATCGGCCCGTATTTGGGCCAGAACCGGTTGTAGCTTCGACGGTTCAGGGAACGGTCGATGCCAAACCGGTGACTGCGGCGGTAAGCTGAACTGCCAAGCTTACGGTACAGCTCCAAATACACTAGCAGAATACTCTTTAAACCAATATATGAATTTGGACTTTTTTGATATATCTGTTATTGATGGATTCAACGTTCCTATGGAATTTAGTCCAACTTCTAATGGCTGTACACGTGGCATAAGATGTACGGCCGATATCATCGGACAATGTCCTAATGAGCTTAAAACTCAAGGTGGTTGTAACAACGCATGTACCGTTTTTAAAACCGATAATTACTGTTGTAATTCTGGTAATTGTGGACCCACTAACTATTCTCAATATTTCAAGAATAAGTGCCCAGATGCTTATAGTTACCCAAAAGATGATGCGACAAGTCTATTCACTTGCAAAGGTGGAACCAATTACAAGGTTGTCTTTTGCCCATGA
Protein sequence

>Msa1412290

MSLIKILLLPILALCLISTQAARFDIVNRCSYTVWPAGIPRGGGRQLNSGQTWALDVPAGTSAARIWGRTGCRFDGSGRALSCSVSGRPPTTLAEYTLNGGNNLDYIDISVIDGFNIPMQFSSTSNGCNKVLTCRDSNCPDAYHQPNDVKTVTCPAGTTPTFYSQNKTEYTVFVKMSSLIKTFLFSLITLSFTYTQAATFDITNNCPNTVWAAAVPGGGKQLNRGEKWTINVAAGTTSARIWARTGCSFDGSGNGRCQTGDCGGKLNCQAYGTAPNTLAEYSLNQYMNLDFFDISVIDGFNVPMEFSPTSNGCTRGIRCTADIIGQCPNELKTQGGCNNACTVFKTDNYCCNSGNCGPTNYSQYFKNKCPDAYSYPKDDATSLFTCKGGTNYKVVFCP*