AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 27 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGAACCAAGTGTGAATT+CGG 0.365389 6_1:-26974816 Msa0880400:intron
GGCAGTGATGGTTGTCAAAC+TGG 0.398020 6_1:+26974737 None:intergenic
AAATGATCGAGAAAGCAATA+TGG 0.412235 6_1:+26980580 None:intergenic
GTGAATTCGGCAAGGGTTAG+CGG 0.425952 6_1:-26974803 Msa0880400:CDS
TGAATTCGGCAAGGGTTAGC+GGG 0.433684 6_1:-26974802 Msa0880400:CDS
GCCCTTGATTGCAGCTCATC+CGG 0.442995 6_1:+26974773 None:intergenic
CACTAGGTTCAACGATTTCA+AGG 0.448681 6_1:-26980439 Msa0880400:five_prime_UTR
TTGGGTTGATGATAAGCGTC+AGG 0.449898 6_1:-26980361 Msa0880400:exon
GCAAAAGACAATTCTATAGT+TGG 0.465056 6_1:-26980416 Msa0880400:five_prime_UTR
TACCGGATGAGCTGCAATCA+AGG 0.472730 6_1:-26974775 Msa0880400:CDS
ATTCTATAGTTGGTACCAGC+AGG 0.484718 6_1:-26980406 Msa0880400:five_prime_UTR
ACCCTTGCCGAATTCACACT+TGG 0.518284 6_1:+26974809 None:intergenic
TGCTATGATGCACATAAGAA+AGG 0.521885 6_1:-26980612 None:intergenic
GAATTCGGCAAGGGTTAGCG+GGG 0.553998 6_1:-26974801 Msa0880400:CDS
TGTCAAACTGGTGATTGTGC+TGG 0.557596 6_1:+26974749 None:intergenic
AAAACTGTTACATGCCCTGC+TGG 0.561280 6_1:+26980391 None:intergenic
AGTAATAAATAGAAAACACT+AGG 0.574082 6_1:-26980455 Msa0880400:five_prime_UTR
AACCAAGTGTGAATTCGGCA+AGG 0.607224 6_1:-26974811 Msa0880400:CDS
ACCGGATGAGCTGCAATCAA+GGG 0.609796 6_1:-26974774 Msa0880400:CDS
AGGGCAATTAGAATCCCTGC+AGG 0.610979 6_1:-26980341 Msa0880400:intron
TGTCTGCACATTAATTGTGT+AGG 0.620629 6_1:+26980506 None:intergenic
ACTAGGTTCAACGATTTCAA+GGG 0.625374 6_1:-26980438 Msa0880400:five_prime_UTR
ACCAAGTGTGAATTCGGCAA+GGG 0.626520 6_1:-26974810 Msa0880400:CDS
TTCTATAGTTGGTACCAGCA+GGG 0.634139 6_1:-26980405 Msa0880400:five_prime_UTR
TGGGTTGATGATAAGCGTCA+GGG 0.653624 6_1:-26980360 Msa0880400:exon
CAACAAAGTACTAACCTGCA+GGG 0.664924 6_1:+26980327 None:intergenic
AATTCGGCAAGGGTTAGCGG+GGG 0.672413 6_1:-26974800 Msa0880400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTTTAAAGATTAATA+GGG + chr6_1:26976301-26976320 None:intergenic 10.0%
!!! AGAAGTAATTTTTTTTTTTT+TGG + chr6_1:26979067-26979086 None:intergenic 10.0%
!! AAAAAAAAAAAATTACTTCT+CGG - chr6_1:26979067-26979086 Msa0880400:intron 10.0%
!!! TTTTTTTTAAATGAAAACAT+GGG + chr6_1:26979413-26979432 None:intergenic 10.0%
!!! ATTTTTTTTAAATGAAAACA+TGG + chr6_1:26979414-26979433 None:intergenic 10.0%
!!! TTTATTACTTTTTTAAATGT+GGG + chr6_1:26979727-26979746 None:intergenic 10.0%
!!! TTTTATTACTTTTTTAAATG+TGG + chr6_1:26979728-26979747 None:intergenic 10.0%
!!! TTTAATAAAAGTACATATTA+AGG + chr6_1:26979929-26979948 None:intergenic 10.0%
!!! CTTTTTATTTATATTTAAGA+TGG - chr6_1:26980255-26980274 Msa0880400:intron 10.0%
!! TTCTATTATAAATAAACAAA+AGG + chr6_1:26980288-26980307 None:intergenic 10.0%
!! TATAATAGAAAGAAATATAA+AGG - chr6_1:26980298-26980317 Msa0880400:intron 10.0%
!! ATAATAGAAAGAAATATAAA+GGG - chr6_1:26980299-26980318 Msa0880400:intron 10.0%
!! AATATTATTATTGCCTATAT+TGG + chr6_1:26975432-26975451 None:intergenic 15.0%
!!! GTTGATTTTTAAAGATTAAT+AGG + chr6_1:26976302-26976321 None:intergenic 15.0%
!! AAGAAAATAAGATAAGAAAA+TGG + chr6_1:26976868-26976887 None:intergenic 15.0%
!! AAAATTCTTTAACATTTGAA+TGG + chr6_1:26977532-26977551 None:intergenic 15.0%
!!! AAAACATGTTTTTAGAATTT+CGG - chr6_1:26978393-26978412 Msa0880400:intron 15.0%
!! TGATTTATTGAAAAAATTCT+TGG + chr6_1:26978454-26978473 None:intergenic 15.0%
!! AATCACTTATTTCAATAAAA+GGG + chr6_1:26978630-26978649 None:intergenic 15.0%
!! AAATCACTTATTTCAATAAA+AGG + chr6_1:26978631-26978650 None:intergenic 15.0%
!!! AAAAAAATGATGTGTTTTAT+TGG - chr6_1:26979026-26979045 Msa0880400:intron 15.0%
!! AAATAAATGTGAAAAATATG+TGG - chr6_1:26979179-26979198 Msa0880400:intron 15.0%
!!! ATTTAGAGGTATTTTTTTTA+CGG + chr6_1:26979483-26979502 None:intergenic 15.0%
!! TGTTTAATATGTAAAGATAA+TGG - chr6_1:26979840-26979859 Msa0880400:intron 15.0%
!! GTTTAATATGTAAAGATAAT+GGG - chr6_1:26979841-26979860 Msa0880400:intron 15.0%
!! ATATTTAAGTACTATTTCAT+TGG - chr6_1:26979866-26979885 Msa0880400:intron 15.0%
!! AGTAATAAATAGAAAACACT+AGG - chr6_1:26974902-26974921 Msa0880400:intron 20.0%
!!! TTTATGAGAGACATTTTTTT+TGG - chr6_1:26975452-26975471 Msa0880400:intron 20.0%
!!! AGTTTCATAATTATCGATTA+AGG + chr6_1:26975585-26975604 None:intergenic 20.0%
!!! TCAATTTAATTTTCCACATA+CGG + chr6_1:26975614-26975633 None:intergenic 20.0%
!! TTGCTATATGTATATAGATA+TGG + chr6_1:26975699-26975718 None:intergenic 20.0%
!! TTTCGTCTCTAAATTAATTT+AGG - chr6_1:26975863-26975882 Msa0880400:intron 20.0%
!! TAAATGATTAAACAATGCAA+GGG + chr6_1:26977044-26977063 None:intergenic 20.0%
!! TTAAATGATTAAACAATGCA+AGG + chr6_1:26977043-26977062 None:intergenic 20.0%
!! TTAAATGATTAAACAATGCA+AGG - chr6_1:26977043-26977062 Msa0880400:intron 20.0%
!! TAAATGATTAAACAATGCAA+GGG - chr6_1:26977044-26977063 Msa0880400:intron 20.0%
!! AGTAGTAACACATAAATTAA+TGG + chr6_1:26977147-26977166 None:intergenic 20.0%
!!! AAGAAATGAACAGTTTTAAA+AGG + chr6_1:26977240-26977259 None:intergenic 20.0%
!!! CAATATTTCAATTTTGTAAC+TGG - chr6_1:26977737-26977756 Msa0880400:intron 20.0%
!! TCTTATCTCAAGTATTTATT+TGG - chr6_1:26977788-26977807 Msa0880400:intron 20.0%
!! CAAAATATAGACATTGTATA+AGG + chr6_1:26977814-26977833 None:intergenic 20.0%
!!! TATTCACAATGTTTCAATTT+TGG + chr6_1:26978335-26978354 None:intergenic 20.0%
!! TATGACTATATTTAAATCTC+CGG + chr6_1:26978856-26978875 None:intergenic 20.0%
!! TTAAATATAGTCATATGTGT+AGG - chr6_1:26978861-26978880 Msa0880400:intron 20.0%
!! AGATGTCTTAAATATATGTA+GGG + chr6_1:26979217-26979236 None:intergenic 20.0%
!! AAGATGTCTTAAATATATGT+AGG + chr6_1:26979218-26979237 None:intergenic 20.0%
!!! TTTTTTTACGGTTTGTATTT+TGG + chr6_1:26979471-26979490 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr6_1:26979807-26979826 None:intergenic 20.0%
!! ATTAATTTATCTGTGATTGA+TGG + chr6_1:26980509-26980528 None:intergenic 20.0%
!!! TGTAACAGTTTTAACATCAT+TGG - chr6_1:26974977-26974996 Msa0880400:intron 25.0%
!!! GTAACAGTTTTAACATCATT+GGG - chr6_1:26974978-26974997 Msa0880400:intron 25.0%
!! CAATTTAGTTCAACTTCTAA+TGG + chr6_1:26975059-26975078 None:intergenic 25.0%
!!! ATTGAGCCTTAGTTTTATAT+AGG - chr6_1:26975544-26975563 Msa0880400:intron 25.0%
! AATGTTGAATAAAATATCCG+CGG + chr6_1:26975790-26975809 None:intergenic 25.0%
!!! ATTTTGCTAATTTGATGATG+TGG + chr6_1:26976019-26976038 None:intergenic 25.0%
! ACATCATCAAATTAGCAAAA+TGG - chr6_1:26976018-26976037 Msa0880400:intron 25.0%
!!! GTAAACTCATTTTTAAGAGA+AGG - chr6_1:26976461-26976480 Msa0880400:intron 25.0%
!!! TCATTTTTAAGAGAAGGAAT+TGG - chr6_1:26976467-26976486 Msa0880400:intron 25.0%
! CACTATATTAAGAAAATCCA+TGG + chr6_1:26976591-26976610 None:intergenic 25.0%
!! TGGATTTTCTTAATATAGTG+TGG - chr6_1:26976591-26976610 Msa0880400:intron 25.0%
!! ATTTTCTTAATATAGTGTGG+TGG - chr6_1:26976594-26976613 Msa0880400:intron 25.0%
! AACAATGAATATTATCTCGT+CGG + chr6_1:26976673-26976692 None:intergenic 25.0%
! TGTTAATTGATGAATCAAGT+TGG - chr6_1:26976689-26976708 Msa0880400:intron 25.0%
! AGATAAGAAAATGGAAGAAA+AGG + chr6_1:26976859-26976878 None:intergenic 25.0%
!!! GGTTCAATCACTTTTTAAAT+CGG + chr6_1:26977328-26977347 None:intergenic 25.0%
! ATAACTCAAATATCTCATGA+TGG + chr6_1:26977956-26977975 None:intergenic 25.0%
!! TTGATAATAGAACTGTTCAT+TGG - chr6_1:26977983-26978002 Msa0880400:intron 25.0%
! TGATAATAGAACTGTTCATT+GGG - chr6_1:26977984-26978003 Msa0880400:intron 25.0%
! TGGAATGCATTATTATTTGT+AGG - chr6_1:26978202-26978221 Msa0880400:intron 25.0%
! ATTATATAATTAACTCACGC+AGG + chr6_1:26978371-26978390 None:intergenic 25.0%
!! TTGAAAAAATTCTTGGTCTT+CGG + chr6_1:26978447-26978466 None:intergenic 25.0%
! AAATAGAAAAACGAGTTAGA+GGG + chr6_1:26978607-26978626 None:intergenic 25.0%
! TCCATGTTAATAGCATAAAA+CGG + chr6_1:26978900-26978919 None:intergenic 25.0%
! CAAATTCGCTAAAAACAAAA+AGG + chr6_1:26978949-26978968 None:intergenic 25.0%
!!! AATGATGTGTTTTATTGGTT+TGG - chr6_1:26979031-26979050 Msa0880400:intron 25.0%
!! TAATCGGAATATTTTTCTTG+CGG + chr6_1:26979331-26979350 None:intergenic 25.0%
! ACTCTTTCTTTGATAAATTC+GGG + chr6_1:26979374-26979393 None:intergenic 25.0%
! CACTCTTTCTTTGATAAATT+CGG + chr6_1:26979375-26979394 None:intergenic 25.0%
! TTAATTCGTCTGATTACTAT+AGG - chr6_1:26979433-26979452 Msa0880400:intron 25.0%
! TAATTCGTCTGATTACTATA+GGG - chr6_1:26979434-26979453 Msa0880400:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr6_1:26979766-26979785 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr6_1:26979767-26979786 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr6_1:26979739-26979758 Msa0880400:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr6_1:26979808-26979827 None:intergenic 25.0%
!!! GAATTGTCTTACTTTTTTTG+TGG + chr6_1:26980034-26980053 None:intergenic 25.0%
!! TACAGTAATTTTACTTCATC+TGG - chr6_1:26980180-26980199 Msa0880400:intron 25.0%
! TATAAAGGGTGAATCTATAT+AGG - chr6_1:26980313-26980332 Msa0880400:intron 25.0%
AAATGATCGAGAAAGCAATA+TGG + chr6_1:26974780-26974799 None:intergenic 30.0%
GCAAAAGACAATTCTATAGT+TGG - chr6_1:26974941-26974960 Msa0880400:intron 30.0%
GAAGTTGAACTAAATTGCAT+TGG - chr6_1:26975062-26975081 Msa0880400:intron 30.0%
AATGTTGAAACCATCAATCA+CGG - chr6_1:26975085-26975104 Msa0880400:intron 30.0%
ATTGATATATCCGTGATTGA+TGG + chr6_1:26975098-26975117 None:intergenic 30.0%
ATTAAACAGAGAGCCAATAT+AGG - chr6_1:26975416-26975435 Msa0880400:intron 30.0%
! ATTATCGATTAAGGTTCTGT+GGG + chr6_1:26975576-26975595 None:intergenic 30.0%
! AATTATCGATTAAGGTTCTG+TGG + chr6_1:26975577-26975596 None:intergenic 30.0%
TACGTAATTAACTTACACGT+AGG + chr6_1:26975827-26975846 None:intergenic 30.0%
ATCAAATTAGCAAAATGGCA+TGG - chr6_1:26976023-26976042 Msa0880400:intron 30.0%
TCAAATTAGCAAAATGGCAT+GGG - chr6_1:26976024-26976043 Msa0880400:intron 30.0%
ATGAGAAAAGAAGAAAGGAA+GGG + chr6_1:26976064-26976083 None:intergenic 30.0%
!!! GTTTTAGAGAAGAAGAAGAA+GGG + chr6_1:26976112-26976131 None:intergenic 30.0%
TAAATTCGAAATTCAGCTTC+TGG + chr6_1:26976182-26976201 None:intergenic 30.0%
TCCAAATCAAAATCTGTCAT+TGG - chr6_1:26976230-26976249 Msa0880400:intron 30.0%
AAATCAAAATCTGTCATTGG+CGG - chr6_1:26976233-26976252 Msa0880400:intron 30.0%
! ACCAGATTTTCAAATTCTGT+GGG + chr6_1:26976398-26976417 None:intergenic 30.0%
! AACCAGATTTTCAAATTCTG+TGG + chr6_1:26976399-26976418 None:intergenic 30.0%
!! ATCTGGTTCGATTTTATCAA+TGG - chr6_1:26976411-26976430 Msa0880400:intron 30.0%
AAGAAAATGGAAGAAAAGGA+AGG + chr6_1:26976855-26976874 None:intergenic 30.0%
!!! CACACTGACACTTTTAAAAT+CGG + chr6_1:26977349-26977368 None:intergenic 30.0%
AGGAAATGAGAAAAAACGAA+AGG - chr6_1:26977389-26977408 Msa0880400:intron 30.0%
GGAAATGAGAAAAAACGAAA+GGG - chr6_1:26977390-26977409 Msa0880400:intron 30.0%
!!! TAACTAATGCAGAGGTATTT+TGG + chr6_1:26977597-26977616 None:intergenic 30.0%
!! TTGCTGTTGTACATGTTTTA+TGG - chr6_1:26977861-26977880 Msa0880400:intron 30.0%
AAGAGGAAATGGAAGAAATT+AGG - chr6_1:26978255-26978274 Msa0880400:intron 30.0%
AGAGGAAATGGAAGAAATTA+GGG - chr6_1:26978256-26978275 Msa0880400:intron 30.0%
!!! GAGATCATTTTTTGTTGTTG+AGG + chr6_1:26978488-26978507 None:intergenic 30.0%
AATAGAAAAACGAGTTAGAG+GGG + chr6_1:26978606-26978625 None:intergenic 30.0%
GAAATAGAAAAACGAGTTAG+AGG + chr6_1:26978608-26978627 None:intergenic 30.0%
!!! TTGTTTTTTTTGTTTCTCCC+AGG - chr6_1:26978730-26978749 Msa0880400:intron 30.0%
GCAAGAAAAATATTCCGATT+AGG - chr6_1:26979330-26979349 Msa0880400:intron 30.0%
TCTTTCTTTGATAAATTCGG+GGG + chr6_1:26979372-26979391 None:intergenic 30.0%
CTCTTTCTTTGATAAATTCG+GGG + chr6_1:26979373-26979392 None:intergenic 30.0%
CGAATTTATCAAAGAAAGAG+TGG - chr6_1:26979373-26979392 Msa0880400:intron 30.0%
!! TACGGTTTGTATTTTGGATT+GGG + chr6_1:26979465-26979484 None:intergenic 30.0%
!! TTACGGTTTGTATTTTGGAT+TGG + chr6_1:26979466-26979485 None:intergenic 30.0%
! ATAATAGGTATTGTAACCGA+CGG + chr6_1:26979520-26979539 None:intergenic 30.0%
ACAATACCTATTATCCAGAT+AGG - chr6_1:26979526-26979545 Msa0880400:intron 30.0%
CCAATGACAATACACTAATA+AGG + chr6_1:26979895-26979914 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG - chr6_1:26979892-26979911 Msa0880400:intron 30.0%
TGAGATCAATAATTTCTTGC+AGG + chr6_1:26980073-26980092 None:intergenic 30.0%
ATATAGGTCCAACAATTTCA+AGG - chr6_1:26980329-26980348 Msa0880400:intron 30.0%
TATAGGTCCAACAATTTCAA+GGG - chr6_1:26980330-26980349 Msa0880400:intron 30.0%
! GCAAAAGACGATTTTATAGT+TGG - chr6_1:26980352-26980371 Msa0880400:CDS 30.0%
!! ATTTTATAGTTGGTACCAAC+TGG - chr6_1:26980362-26980381 Msa0880400:exon 30.0%
!! TTTTATAGTTGGTACCAACT+GGG - chr6_1:26980363-26980382 Msa0880400:exon 30.0%
TGTCTGCACATTAATTGTGT+AGG + chr6_1:26974854-26974873 None:intergenic 35.0%
ACTAGGTTCAACGATTTCAA+GGG - chr6_1:26974919-26974938 Msa0880400:intron 35.0%
ACTTAACGGTGGAAACAATT+TGG + chr6_1:26975126-26975145 None:intergenic 35.0%
CTTGCAGAATACACACTTAA+CGG + chr6_1:26975140-26975159 None:intergenic 35.0%
TAATATCTACACAAGCAGCA+AGG + chr6_1:26975400-26975419 None:intergenic 35.0%
CTGTGGCCTATATAAAACTA+AGG + chr6_1:26975553-26975572 None:intergenic 35.0%
AGTCAATTACTTCTGCAGTT+TGG + chr6_1:26975664-26975683 None:intergenic 35.0%
! CAGCTTTGATGACATAAACA+GGG - chr6_1:26975727-26975746 Msa0880400:intron 35.0%
!! TCTGTTTTATTAATCCTCCG+CGG - chr6_1:26975770-26975789 Msa0880400:intron 35.0%
TTAAATGACGCCTAATTGCA+AGG + chr6_1:26975907-26975926 None:intergenic 35.0%
GATGAGAAAAGAAGAAAGGA+AGG + chr6_1:26976065-26976084 None:intergenic 35.0%
ACGAGATGAGAAAAGAAGAA+AGG + chr6_1:26976069-26976088 None:intergenic 35.0%
AAGGGAAGAGAAGAAGAAAT+GGG + chr6_1:26976094-26976113 None:intergenic 35.0%
!!! GGTTTTAGAGAAGAAGAAGA+AGG + chr6_1:26976113-26976132 None:intergenic 35.0%
TCTGATTGCAACATGAAACA+AGG + chr6_1:26976140-26976159 None:intergenic 35.0%
!!! GCCAATGACAGATTTTGATT+TGG + chr6_1:26976234-26976253 None:intergenic 35.0%
!! AATAGTGTCGATAGTAACAG+AGG + chr6_1:26976268-26976287 None:intergenic 35.0%
! GGTTCGATTTTATCAATGGA+AGG - chr6_1:26976415-26976434 Msa0880400:intron 35.0%
GAGCTTATTATCCTCTTAGT+GGG + chr6_1:26976548-26976567 None:intergenic 35.0%
TGAGCTTATTATCCTCTTAG+TGG + chr6_1:26976549-26976568 None:intergenic 35.0%
ATTCCATGATCTTTCATCTC+CGG - chr6_1:26976624-26976643 Msa0880400:intron 35.0%
AGAAAAGGGAAAAGAGGAAA+GGG + chr6_1:26976820-26976839 None:intergenic 35.0%
ATGGAAGAAAAGGAAGGAAA+TGG + chr6_1:26976849-26976868 None:intergenic 35.0%
!! TACTACCCTCCAATTTTAGT+GGG - chr6_1:26977163-26977182 Msa0880400:intron 35.0%
! GTTAGGGTGTCTCAAAAAAT+TGG + chr6_1:26977492-26977511 None:intergenic 35.0%
! CATTGGGAAATTCCTGATTT+TGG - chr6_1:26978000-26978019 Msa0880400:intron 35.0%
ATTGACAAGCTTCATAACCT+CGG + chr6_1:26978074-26978093 None:intergenic 35.0%
GCAGGATAAATGAAGTATGA+AGG + chr6_1:26978165-26978184 None:intergenic 35.0%
!! TGTTGATGATGAAGAGGAAA+TGG - chr6_1:26978244-26978263 Msa0880400:intron 35.0%
! AAAAAATTCTTGGTCTTCGG+TGG + chr6_1:26978444-26978463 None:intergenic 35.0%
! AGAAACTAGGGTTTTTGTGA+CGG + chr6_1:26978528-26978547 None:intergenic 35.0%
!! GCCGTTTTATGCTATTAACA+TGG - chr6_1:26978896-26978915 Msa0880400:intron 35.0%
TGTAAAAATTCGTTGTGACC+AGG - chr6_1:26979108-26979127 Msa0880400:intron 35.0%
AATCCAAGTGTGATTAAACC+TGG + chr6_1:26979129-26979148 None:intergenic 35.0%
GTTCCTGCATAATATATGCA+GGG + chr6_1:26979241-26979260 None:intergenic 35.0%
TGTTCCTGCATAATATATGC+AGG + chr6_1:26979242-26979261 None:intergenic 35.0%
TTATGCAGGAACATTGTGAT+AGG - chr6_1:26979249-26979268 Msa0880400:intron 35.0%
CTTTCTTTGATAAATTCGGG+GGG + chr6_1:26979371-26979390 None:intergenic 35.0%
! AAAGAAAGAGTGGATTTCCA+TGG - chr6_1:26979383-26979402 Msa0880400:intron 35.0%
! TATTGTCGTGATCGATTTAG+AGG + chr6_1:26979497-26979516 None:intergenic 35.0%
TGAACTCCTATCTGGATAAT+AGG + chr6_1:26979535-26979554 None:intergenic 35.0%
TTATCCAGATAGGAGTTCAA+TGG - chr6_1:26979536-26979555 Msa0880400:intron 35.0%
TAGGAGTTCAATGGTAGTAT+CGG - chr6_1:26979545-26979564 Msa0880400:intron 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr6_1:26979640-26979659 None:intergenic 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr6_1:26979641-26979660 None:intergenic 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr6_1:26979644-26979663 None:intergenic 35.0%
AAATAAGTGATGTGTCACGT+AGG - chr6_1:26979956-26979975 Msa0880400:intron 35.0%
AATAAGTGATGTGTCACGTA+GGG - chr6_1:26979957-26979976 Msa0880400:intron 35.0%
CATTTAAGGAGTCCTTGTTA+GGG - chr6_1:26979982-26980001 Msa0880400:intron 35.0%
! TCTTTTGCCCTTGAAATTGT+TGG + chr6_1:26980340-26980359 None:intergenic 35.0%
TGTATTCGTTCGTTTATCAC+CGG - chr6_1:26980388-26980407 Msa0880400:five_prime_UTR 35.0%
! CAATTTAGTTCAACCTCTAG+TGG + chr6_1:26980470-26980489 None:intergenic 35.0%
GAGGTTGAACTAAATTGCAT+TGG - chr6_1:26980473-26980492 Msa0880400:five_prime_UTR 35.0%
CACTAGGTTCAACGATTTCA+AGG - chr6_1:26974918-26974937 Msa0880400:intron 40.0%
! ATTCTATAGTTGGTACCAGC+AGG - chr6_1:26974951-26974970 Msa0880400:intron 40.0%
! TTCTATAGTTGGTACCAGCA+GGG - chr6_1:26974952-26974971 Msa0880400:intron 40.0%
! CAACAAAGTACTAACCTGCA+GGG + chr6_1:26975033-26975052 None:intergenic 40.0%
AAGTGTGTATTCTGCAAGTG+TGG - chr6_1:26975142-26975161 Msa0880400:intron 40.0%
TCTTCTCTTGTGTTCGCATA+TGG + chr6_1:26975496-26975515 None:intergenic 40.0%
! GCAGCTTTGATGACATAAAC+AGG - chr6_1:26975726-26975745 Msa0880400:intron 40.0%
GTTGAATAAAATATCCGCGG+AGG + chr6_1:26975787-26975806 None:intergenic 40.0%
TGTGTTTCGTCCTTGCAATT+AGG - chr6_1:26975894-26975913 Msa0880400:intron 40.0%
! ATTGCAGGATTAGCGATTAC+AGG + chr6_1:26975939-26975958 None:intergenic 40.0%
ACAATGCAAGGGTAAATTGC+AGG + chr6_1:26977055-26977074 None:intergenic 40.0%
! GCAGTCATTAAGTGGGTTTA+GGG + chr6_1:26975997-26976016 None:intergenic 40.0%
TGATGTGGCAGTCATTAAGT+GGG + chr6_1:26976004-26976023 None:intergenic 40.0%
ATGATGTGGCAGTCATTAAG+TGG + chr6_1:26976005-26976024 None:intergenic 40.0%
TTAGCAAAATGGCATGGGAA+TGG - chr6_1:26976029-26976048 Msa0880400:intron 40.0%
GAAGGGAAGAGAAGAAGAAA+TGG + chr6_1:26976095-26976114 None:intergenic 40.0%
TGCAACATGAAACAAGGACT+GGG + chr6_1:26976134-26976153 None:intergenic 40.0%
TTGCAACATGAAACAAGGAC+TGG + chr6_1:26976135-26976154 None:intergenic 40.0%
GAACTCAGAGAAGATGAAGA+GGG + chr6_1:26976347-26976366 None:intergenic 40.0%
GCCCACAGAATTTGAAAATC+TGG - chr6_1:26976394-26976413 Msa0880400:intron 40.0%
GAAGGAATTGGAAGAAGTGA+TGG - chr6_1:26976479-26976498 Msa0880400:intron 40.0%
! AAGACCTTTTCTTCTTTCGC+CGG - chr6_1:26976719-26976738 Msa0880400:intron 40.0%
! CTCTTCTCTCTCTCTCTTTT+CGG - chr6_1:26976750-26976769 Msa0880400:intron 40.0%
GAGAAAAGGGAAAAGAGGAA+AGG + chr6_1:26976821-26976840 None:intergenic 40.0%
CGAAAGAGAAAAGGGAAAAG+AGG + chr6_1:26976826-26976845 None:intergenic 40.0%
GGAAATGGCGAAAGAGAAAA+GGG + chr6_1:26976834-26976853 None:intergenic 40.0%
AGGAAATGGCGAAAGAGAAA+AGG + chr6_1:26976835-26976854 None:intergenic 40.0%
! TTCTGTGCTTGTGTTGTTGT+TGG - chr6_1:26976890-26976909 Msa0880400:intron 40.0%
! TCTGTGCTTGTGTTGTTGTT+GGG - chr6_1:26976891-26976910 Msa0880400:intron 40.0%
ACTTGACAGCTTATCCATCT+GGG + chr6_1:26976949-26976968 None:intergenic 40.0%
AACTCATCTGTTTACTGACG+TGG + chr6_1:26976991-26977010 None:intergenic 40.0%
ACGTCAGTAAACAGATGAGT+TGG - chr6_1:26976990-26977009 Msa0880400:intron 40.0%
! TGAGTTGGCAGTGATTAAGT+TGG - chr6_1:26977005-26977024 Msa0880400:intron 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG - chr6_1:26977012-26977031 Msa0880400:intron 40.0%
TTTAAACGACGCCTAATTGC+AGG - chr6_1:26977102-26977121 Msa0880400:intron 40.0%
TTAAACGACGCCTAATTGCA+GGG - chr6_1:26977103-26977122 Msa0880400:intron 40.0%
! TGTGTTTTGTCCCTGCAATT+AGG + chr6_1:26977116-26977135 None:intergenic 40.0%
! CTACTACCCTCCAATTTTAG+TGG - chr6_1:26977162-26977181 Msa0880400:intron 40.0%
ACATGCCCACTAAAATTGGA+GGG + chr6_1:26977171-26977190 None:intergenic 40.0%
!! TCCAATTTTAGTGGGCATGT+GGG - chr6_1:26977171-26977190 Msa0880400:intron 40.0%
!!! TGCGCTGACACTTTTAAGAT+CGG - chr6_1:26977297-26977316 Msa0880400:intron 40.0%
AGTTAACTCGCGCTGAATTT+AGG - chr6_1:26977369-26977388 Msa0880400:intron 40.0%
!! TTGGATAATGGGCCTTCTTT+AGG - chr6_1:26977437-26977456 Msa0880400:intron 40.0%
AAGTGAGCTACACCTAAAGA+AGG + chr6_1:26977452-26977471 None:intergenic 40.0%
TCTTTAGGTGTAGCTCACTT+TGG - chr6_1:26977452-26977471 Msa0880400:intron 40.0%
!!! GTATTTTGGTCAGTTTGGCT+GGG + chr6_1:26977583-26977602 None:intergenic 40.0%
!!! CAGAGGTATTTTGGTCAGTT+TGG + chr6_1:26977588-26977607 None:intergenic 40.0%
GCGTTAGTTAACTAATGCAG+AGG + chr6_1:26977605-26977624 None:intergenic 40.0%
CTACAAAGGCAACCAAAATC+AGG + chr6_1:26978015-26978034 None:intergenic 40.0%
AGTACGAGCAATTGCTACAA+AGG + chr6_1:26978029-26978048 None:intergenic 40.0%
GCTTGTCAATAACCTCATGA+AGG - chr6_1:26978084-26978103 Msa0880400:intron 40.0%
TGCATAGCAACAACCATTTC+AGG + chr6_1:26978112-26978131 None:intergenic 40.0%
GTTCAGCAAAGAAATGACCA+AGG - chr6_1:26978135-26978154 Msa0880400:intron 40.0%
ATAATTAGTGTGACTCGAGC+AGG + chr6_1:26978183-26978202 None:intergenic 40.0%
TGCTCGAGTCACACTAATTA+TGG - chr6_1:26978182-26978201 Msa0880400:intron 40.0%
TAGGAAGATGCTATAGCCTA+GGG - chr6_1:26978221-26978240 Msa0880400:intron 40.0%
GGATGAAGGAGAAGAAACTA+GGG + chr6_1:26978540-26978559 None:intergenic 40.0%
TGGATGAAGGAGAAGAAACT+AGG + chr6_1:26978541-26978560 None:intergenic 40.0%
! TCTGAAGCGATCAAATACCT+GGG + chr6_1:26978750-26978769 None:intergenic 40.0%
! ATCTGAAGCGATCAAATACC+TGG + chr6_1:26978751-26978770 None:intergenic 40.0%
GCAGATCCAATCAATGACTT+TGG - chr6_1:26978794-26978813 Msa0880400:intron 40.0%
ATGGCACCAAAGTCATTGAT+TGG + chr6_1:26978803-26978822 None:intergenic 40.0%
ATCCGGAAACATGGTTATTC+CGG - chr6_1:26978834-26978853 Msa0880400:intron 40.0%
AAAAGGATGAATCTGCGAAC+AGG + chr6_1:26978932-26978951 None:intergenic 40.0%
TGACCAGGTTTAATCACACT+TGG - chr6_1:26979123-26979142 Msa0880400:intron 40.0%
CTTCCCTGCATATATTATGC+AGG - chr6_1:26979235-26979254 Msa0880400:intron 40.0%
TCCGATTAGGAACAACTCAA+CGG - chr6_1:26979343-26979362 Msa0880400:intron 40.0%
ATGAAAACATGGGAACTCCA+TGG + chr6_1:26979403-26979422 None:intergenic 40.0%
ACTACCATTGAACTCCTATC+TGG + chr6_1:26979543-26979562 None:intergenic 40.0%
GAAAAATTGAGTCCCCGTTA+AGG - chr6_1:26979653-26979672 Msa0880400:intron 40.0%
TATAGTTGCCCGTTCCTTAA+CGG + chr6_1:26979670-26979689 None:intergenic 40.0%
AAGGAACGGGCAACTATATA+AGG - chr6_1:26979672-26979691 Msa0880400:intron 40.0%
CCTAACAAGGACTCCTTAAA+TGG + chr6_1:26979984-26980003 None:intergenic 40.0%
CCATTTAAGGAGTCCTTGTT+AGG - chr6_1:26979981-26980000 Msa0880400:intron 40.0%
ACAATGGTAGTTCCCTAACA+AGG + chr6_1:26979997-26980016 None:intergenic 40.0%
TTGTTAGGGAACTACCATTG+TGG - chr6_1:26979996-26980015 Msa0880400:intron 40.0%
TTCTTGCAGGAGCAATATCA+CGG + chr6_1:26980060-26980079 None:intergenic 40.0%
GTATTCGTTCGTTTATCACC+GGG - chr6_1:26980389-26980408 Msa0880400:five_prime_UTR 40.0%
TATTCGTTCGTTTATCACCG+GGG - chr6_1:26980390-26980409 Msa0880400:five_prime_UTR 40.0%
! CAACAAAGTACTAACCTGCA+AGG + chr6_1:26975033-26975052 None:intergenic 40.0%
TACTTTGTTGCATCCACTAG+AGG - chr6_1:26980454-26980473 Msa0880400:five_prime_UTR 40.0%
GTCAGAACCAAGTGTGAATT+CGG - chr6_1:26980541-26980560 Msa0880400:five_prime_UTR 40.0%
AAAACTGTTACATGCCCTGC+TGG + chr6_1:26974969-26974988 None:intergenic 45.0%
!! TTGGGTTGATGATAAGCGTC+AGG - chr6_1:26974996-26975015 Msa0880400:intron 45.0%
!! TGGGTTGATGATAAGCGTCA+GGG - chr6_1:26974997-26975016 Msa0880400:intron 45.0%
! GCAACAAAGTACTAACCTGC+AGG + chr6_1:26975034-26975053 None:intergenic 45.0%
GCAGAATACACACTTAACGG+TGG + chr6_1:26975137-26975156 None:intergenic 45.0%
GTGTATTCTGCAAGTGTGGT+CGG - chr6_1:26975146-26975165 Msa0880400:intron 45.0%
AGTTGTCAAACCGGTGATTG+CGG + chr6_1:26975206-26975225 None:intergenic 45.0%
TGAACCGTCAAATCTGCAAC+CGG - chr6_1:26975235-26975254 Msa0880400:intron 45.0%
TGCGAACACAAGAGAAGAGA+TGG - chr6_1:26975498-26975517 Msa0880400:intron 45.0%
TGAAACTGAGATGCCGTATG+TGG - chr6_1:26975598-26975617 Msa0880400:intron 45.0%
! GGCAGTCATTAAGTGGGTTT+AGG + chr6_1:26975998-26976017 None:intergenic 45.0%
TCAAAATCTGTCATTGGCGG+TGG - chr6_1:26976236-26976255 Msa0880400:intron 45.0%
!! AGTGTCGATAGTAACAGAGG+AGG + chr6_1:26976265-26976284 None:intergenic 45.0%
GGGAGGGATTATGGTATTCT+AGG + chr6_1:26976327-26976346 None:intergenic 45.0%
AGATGAAGAGGGAGGGATTA+TGG + chr6_1:26976336-26976355 None:intergenic 45.0%
TCAGAGAAGATGAAGAGGGA+GGG + chr6_1:26976343-26976362 None:intergenic 45.0%
CGAACTCAGAGAAGATGAAG+AGG + chr6_1:26976348-26976367 None:intergenic 45.0%
CGTTGATCTCATTTGTGCCA+TGG - chr6_1:26976571-26976590 Msa0880400:intron 45.0%
ATGCCGGAGATGAAAGATCA+TGG + chr6_1:26976630-26976649 None:intergenic 45.0%
TGATCTTTCATCTCCGGCAT+CGG - chr6_1:26976630-26976649 Msa0880400:intron 45.0%
! TTGTGTTGTTGTTGGGAGAG+AGG - chr6_1:26976898-26976917 Msa0880400:intron 45.0%
CACTTGACAGCTTATCCATC+TGG + chr6_1:26976950-26976969 None:intergenic 45.0%
CAATGCAAGGGTAAATTGCC+AGG - chr6_1:26977056-26977075 Msa0880400:intron 45.0%
! TTGCCAGGATTAGCGATTAC+AGG - chr6_1:26977071-26977090 Msa0880400:intron 45.0%
! TGCCAGGATTAGCGATTACA+GGG - chr6_1:26977072-26977091 Msa0880400:intron 45.0%
CACATGCCCACTAAAATTGG+AGG + chr6_1:26977172-26977191 None:intergenic 45.0%
!! CTCCAATTTTAGTGGGCATG+TGG - chr6_1:26977170-26977189 Msa0880400:intron 45.0%
ACCCACATGCCCACTAAAAT+TGG + chr6_1:26977175-26977194 None:intergenic 45.0%
!!! TTCCGGGCATTTTAGGATTC+TGG - chr6_1:26977194-26977213 Msa0880400:intron 45.0%
CACCAGAATCCTAAAATGCC+CGG + chr6_1:26977199-26977218 None:intergenic 45.0%
! AGGGAGAAGAGCAATTTTCC+CGG - chr6_1:26977409-26977428 Msa0880400:intron 45.0%
! AGCAATTTTCCCGGGTGATT+TGG - chr6_1:26977418-26977437 Msa0880400:intron 45.0%
! TTCCCGGGTGATTTGGATAA+TGG - chr6_1:26977425-26977444 Msa0880400:intron 45.0%
! TCCCGGGTGATTTGGATAAT+GGG - chr6_1:26977426-26977445 Msa0880400:intron 45.0%
TTAGGTGTAGCTCACTTTGG+TGG - chr6_1:26977455-26977474 Msa0880400:intron 45.0%
!!! GGTATTTTGGTCAGTTTGGC+TGG + chr6_1:26977584-26977603 None:intergenic 45.0%
ACGCAGGTGTTAATTTCAGC+GGG + chr6_1:26977694-26977713 None:intergenic 45.0%
CACGCAGGTGTTAATTTCAG+CGG + chr6_1:26977695-26977714 None:intergenic 45.0%
CTGAAATTAACACCTGCGTG+AGG - chr6_1:26977695-26977714 Msa0880400:intron 45.0%
TGTAGCAATTGCTCGTACTG+TGG - chr6_1:26978030-26978049 Msa0880400:intron 45.0%
GTAGCAATTGCTCGTACTGT+GGG - chr6_1:26978031-26978050 Msa0880400:intron 45.0%
!! ACATCTATCAAAGAGTGCCG+AGG - chr6_1:26978054-26978073 Msa0880400:intron 45.0%
! TGAAGTATGAAGGCGTACCT+TGG + chr6_1:26978155-26978174 None:intergenic 45.0%
GTAGGAAGATGCTATAGCCT+AGG - chr6_1:26978220-26978239 Msa0880400:intron 45.0%
CTCTTCATCATCAACACCCT+AGG + chr6_1:26978240-26978259 None:intergenic 45.0%
!! CTAGGGTGTTGATGATGAAG+AGG - chr6_1:26978238-26978257 Msa0880400:intron 45.0%
GCTATAGACTCGCTAAAGTC+AGG - chr6_1:26978278-26978297 Msa0880400:intron 45.0%
AGTCAGGTCATAAACGTGTC+AGG - chr6_1:26978294-26978313 Msa0880400:intron 45.0%
TTCTCCTTCATCCACCAAAG+AGG - chr6_1:26978547-26978566 Msa0880400:intron 45.0%
TCTCCTTCATCCACCAAAGA+GGG - chr6_1:26978548-26978567 Msa0880400:intron 45.0%
CACCAAAGAGGGGTGATTTA+GGG - chr6_1:26978559-26978578 Msa0880400:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG + chr6_1:26978596-26978615 None:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG + chr6_1:26978597-26978616 None:intergenic 45.0%
CTCCGGAATAACCATGTTTC+CGG + chr6_1:26978839-26978858 None:intergenic 45.0%
! CCCGTTGAGTTGTTCCTAAT+CGG + chr6_1:26979347-26979366 None:intergenic 45.0%
CCGATTAGGAACAACTCAAC+GGG - chr6_1:26979344-26979363 Msa0880400:intron 45.0%
ATCGATCACGACAATACCGT+CGG - chr6_1:26979501-26979520 Msa0880400:intron 45.0%
TATCGGCCAATTATCCCACT+GGG - chr6_1:26979562-26979581 Msa0880400:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr6_1:26979607-26979626 None:intergenic 45.0%
ATTGAGTCCCCGTTAAGGAA+CGG - chr6_1:26979658-26979677 Msa0880400:intron 45.0%
ATAGTTGCCCGTTCCTTAAC+GGG + chr6_1:26979669-26979688 None:intergenic 45.0%
TTAGTTACCCAGGAGAGAGA+GGG + chr6_1:26979699-26979718 None:intergenic 45.0%
TCTCTCTCCTGGGTAACTAA+CGG - chr6_1:26979699-26979718 Msa0880400:intron 45.0%
TGTCACGTAGGGTCCATTTA+AGG - chr6_1:26979968-26979987 Msa0880400:intron 45.0%
AGGGCAATTAGAATCCTTGC+AGG - chr6_1:26980427-26980446 Msa0880400:five_prime_UTR 45.0%
AACCAAGTGTGAATTCGGCA+AGG - chr6_1:26980546-26980565 Msa0880400:five_prime_UTR 45.0%
ACCAAGTGTGAATTCGGCAA+GGG - chr6_1:26980547-26980566 Msa0880400:five_prime_UTR 45.0%
!!! TTTTTATTTATATTTAAGAT+GGG - chr6_1:26980256-26980275 Msa0880400:intron 5.0%
AGGGCAATTAGAATCCCTGC+AGG - chr6_1:26975016-26975035 Msa0880400:intron 50.0%
TATTCTGCAAGTGTGGTCGG+AGG - chr6_1:26975149-26975168 Msa0880400:intron 50.0%
!! CACCGGTTTGACAACTACCA+CGG - chr6_1:26975210-26975229 Msa0880400:intron 50.0%
GGTTGCAGATTTGACGGTTC+AGG + chr6_1:26975236-26975255 None:intergenic 50.0%
CGAACCGGTTGCAGATTTGA+CGG + chr6_1:26975242-26975261 None:intergenic 50.0%
CGTCAAATCTGCAACCGGTT+CGG - chr6_1:26975240-26975259 Msa0880400:intron 50.0%
AACCTCAGCTGCCCGAATTT+GGG + chr6_1:26975267-26975286 None:intergenic 50.0%
GTTGAACTCGGGCCAAACAT+GGG + chr6_1:26975309-26975328 None:intergenic 50.0%
AGTTGAACTCGGGCCAAACA+TGG + chr6_1:26975310-26975329 None:intergenic 50.0%
! GATTAAGGTTCTGTGGGCTG+TGG + chr6_1:26975570-26975589 None:intergenic 50.0%
CTCAGAGAAGATGAAGAGGG+AGG + chr6_1:26976344-26976363 None:intergenic 50.0%
TCACGAAAGCTCCCACTAAG+AGG - chr6_1:26976534-26976553 Msa0880400:intron 50.0%
AGAGAGAAGAGAGAAGCTGC+CGG + chr6_1:26976741-26976760 None:intergenic 50.0%
CTCTCTTCTCTCTATCTCGC+CGG - chr6_1:26976783-26976802 Msa0880400:intron 50.0%
AAAAGAGGAAAGGGAAGCGG+CGG + chr6_1:26976811-26976830 None:intergenic 50.0%
GGGAAAAGAGGAAAGGGAAG+CGG + chr6_1:26976814-26976833 None:intergenic 50.0%
! TGTTGTTGTTGGGAGAGAGG+AGG - chr6_1:26976901-26976920 Msa0880400:intron 50.0%
! GTTGTTGTTGGGAGAGAGGA+GGG - chr6_1:26976902-26976921 Msa0880400:intron 50.0%
TATCCATCTGGGCATGGGAA+TGG + chr6_1:26976938-26976957 None:intergenic 50.0%
CAGCTTATCCATCTGGGCAT+GGG + chr6_1:26976943-26976962 None:intergenic 50.0%
ACAGCTTATCCATCTGGGCA+TGG + chr6_1:26976944-26976963 None:intergenic 50.0%
CTGACGTGGCGCTGTTAAAT+TGG + chr6_1:26976977-26976996 None:intergenic 50.0%
GTCCCTGTAATCGCTAATCC+TGG + chr6_1:26977077-26977096 None:intergenic 50.0%
! TTTAGTGGGCATGTGGGTTC+CGG - chr6_1:26977177-26977196 Msa0880400:intron 50.0%
! ATGTGGGTTCCGGGCATTTT+AGG - chr6_1:26977187-26977206 Msa0880400:intron 50.0%
! GGGAGAAGAGCAATTTTCCC+GGG - chr6_1:26977410-26977429 Msa0880400:intron 50.0%
GCCCATTATCCAAATCACCC+GGG + chr6_1:26977430-26977449 None:intergenic 50.0%
GGCCCATTATCCAAATCACC+CGG + chr6_1:26977431-26977450 None:intergenic 50.0%
ACGCGAGAAAAGAGGGGTTA+GGG + chr6_1:26977508-26977527 None:intergenic 50.0%
AATGGCACGCGAGAAAAGAG+GGG + chr6_1:26977514-26977533 None:intergenic 50.0%
GAATGGCACGCGAGAAAAGA+GGG + chr6_1:26977515-26977534 None:intergenic 50.0%
TGAATGGCACGCGAGAAAAG+AGG + chr6_1:26977516-26977535 None:intergenic 50.0%
! TTTTGGTCAGTTTGGCTGGG+TGG + chr6_1:26977580-26977599 None:intergenic 50.0%
GCGAAAACAAAACCTCACGC+AGG + chr6_1:26977710-26977729 None:intergenic 50.0%
TGGCTAAGTCATGCACTGTC+TGG - chr6_1:26977757-26977776 Msa0880400:intron 50.0%
CCATTTCAGGAGCCTTCATG+AGG + chr6_1:26978099-26978118 None:intergenic 50.0%
CCTCATGAAGGCTCCTGAAA+TGG - chr6_1:26978096-26978115 Msa0880400:intron 50.0%
CTCCTTCATCCACCAAAGAG+GGG - chr6_1:26978549-26978568 Msa0880400:intron 50.0%
CCTAAATCACCCCTCTTTGG+TGG + chr6_1:26978561-26978580 None:intergenic 50.0%
CCACCAAAGAGGGGTGATTT+AGG - chr6_1:26978558-26978577 Msa0880400:intron 50.0%
GACCCTAAATCACCCCTCTT+TGG + chr6_1:26978564-26978583 None:intergenic 50.0%
! GTCATTGATTGGATCTGCGC+TGG + chr6_1:26978792-26978811 None:intergenic 50.0%
ATGTTTCCGGATCTGCAACG+TGG + chr6_1:26978826-26978845 None:intergenic 50.0%
ACGTTGCAGATCCGGAAACA+TGG - chr6_1:26978825-26978844 Msa0880400:intron 50.0%
! GTATCGGCCAATTATCCCAC+TGG - chr6_1:26979561-26979580 Msa0880400:intron 50.0%
GATGCTCCCAGTGGGATAAT+TGG + chr6_1:26979571-26979590 None:intergenic 50.0%
GTTAAGTAAGGACCCCCCAT+TGG + chr6_1:26979595-26979614 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG - chr6_1:26979596-26979615 Msa0880400:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG + chr6_1:26979629-26979648 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG + chr6_1:26979630-26979649 None:intergenic 50.0%
TTGAGTCCCCGTTAAGGAAC+GGG - chr6_1:26979659-26979678 Msa0880400:intron 50.0%
TAGTTGCCCGTTCCTTAACG+GGG + chr6_1:26979668-26979687 None:intergenic 50.0%
TATAAGGACCCTCTCTCTCC+TGG - chr6_1:26979688-26979707 Msa0880400:intron 50.0%
ATAAGGACCCTCTCTCTCCT+GGG - chr6_1:26979689-26979708 Msa0880400:intron 50.0%
GTTAGTTACCCAGGAGAGAG+AGG + chr6_1:26979700-26979719 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG - chr6_1:26979700-26979719 Msa0880400:intron 50.0%
!! GGTCACAAGAGCATCCACAA+TGG + chr6_1:26980013-26980032 None:intergenic 50.0%
CGAACGAATACATGCCCAGT+TGG + chr6_1:26980380-26980399 None:intergenic 50.0%
CCTGATGCTTATCATCTCCC+CGG + chr6_1:26980410-26980429 None:intergenic 50.0%
CGGGGAGATGATAAGCATCA+GGG - chr6_1:26980408-26980427 Msa0880400:five_prime_UTR 50.0%
ACCCTTGCCGAATTCACACT+TGG + chr6_1:26980551-26980570 None:intergenic 50.0%
GTGAATTCGGCAAGGGTTAG+CGG - chr6_1:26980554-26980573 Msa0880400:five_prime_UTR 50.0%
! TGAATTCGGCAAGGGTTAGC+GGG - chr6_1:26980555-26980574 Msa0880400:five_prime_UTR 50.0%
TACCGGATGAGCTGCAATCA+AGG - chr6_1:26980582-26980601 Msa0880400:five_prime_UTR 50.0%
ACCGGATGAGCTGCAATCAA+GGG - chr6_1:26980583-26980602 Msa0880400:five_prime_UTR 50.0%
AAGTGTGGTCGGAGGTCTAC+CGG - chr6_1:26975157-26975176 Msa0880400:intron 55.0%
TACCGGATACGCTGCAACTG+AGG - chr6_1:26975174-26975193 Msa0880400:intron 55.0%
ACCGGATACGCTGCAACTGA+GGG - chr6_1:26975175-26975194 Msa0880400:intron 55.0%
TGTCAAACCGGTGATTGCGG+TGG + chr6_1:26975203-26975222 None:intergenic 55.0%
GGCCGTGGTAGTTGTCAAAC+CGG + chr6_1:26975215-26975234 None:intergenic 55.0%
AGATTTGACGGTTCAGGCCG+TGG + chr6_1:26975230-26975249 None:intergenic 55.0%
!! AACCGGTTCGGCCCCAAATT+CGG - chr6_1:26975252-26975271 Msa0880400:intron 55.0%
ACCTCAGCTGCCCGAATTTG+GGG + chr6_1:26975266-26975285 None:intergenic 55.0%
GAACCTCAGCTGCCCGAATT+TGG + chr6_1:26975268-26975287 None:intergenic 55.0%
GCTGCCGGCGAAAGAAGAAA+AGG + chr6_1:26976726-26976745 None:intergenic 55.0%
TGTCCATTCCCATGCCCAGA+TGG - chr6_1:26976932-26976951 Msa0880400:intron 55.0%
! TTAGTGGGCATGTGGGTTCC+GGG - chr6_1:26977178-26977197 Msa0880400:intron 55.0%
CACGCGAGAAAAGAGGGGTT+AGG + chr6_1:26977509-26977528 None:intergenic 55.0%
! GGGTGGAAGCGAAACTTGCT+GGG + chr6_1:26977563-26977582 None:intergenic 55.0%
TGGGTGGAAGCGAAACTTGC+TGG + chr6_1:26977564-26977583 None:intergenic 55.0%
! CACCCCTCTTTGGTGGATGA+AGG + chr6_1:26978554-26978573 None:intergenic 55.0%
TCGTCGTCTTCGTACGACGT+TGG - chr6_1:26978680-26978699 Msa0880400:intron 55.0%
TGCCATCCACGTTGCAGATC+CGG - chr6_1:26978817-26978836 Msa0880400:intron 55.0%
TTCCGGATCTGCAACGTGGA+TGG + chr6_1:26978822-26978841 None:intergenic 55.0%
CCATTGGAGATGCTCCCAGT+GGG + chr6_1:26979579-26979598 None:intergenic 55.0%
!! CCACTGGGAGCATCTCCAAT+GGG - chr6_1:26979577-26979596 Msa0880400:intron 55.0%
!! CACTGGGAGCATCTCCAATG+GGG - chr6_1:26979578-26979597 Msa0880400:intron 55.0%
!! ACTGGGAGCATCTCCAATGG+GGG - chr6_1:26979579-26979598 Msa0880400:intron 55.0%
ACAAGGACCACTCCCCGTTA+AGG - chr6_1:26979613-26979632 Msa0880400:intron 55.0%
CCAATGGAGGGTCCTTAACG+GGG + chr6_1:26979628-26979647 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG - chr6_1:26979628-26979647 Msa0880400:intron 55.0%
CCGGGGAGATGATAAGCATC+AGG - chr6_1:26980407-26980426 Msa0880400:five_prime_UTR 55.0%
! GAATTCGGCAAGGGTTAGCG+GGG - chr6_1:26980556-26980575 Msa0880400:five_prime_UTR 55.0%
! AATTCGGCAAGGGTTAGCGG+GGG - chr6_1:26980557-26980576 Msa0880400:five_prime_UTR 55.0%
! AAGGGTTAGCGGGGGTTTAC+CGG - chr6_1:26980565-26980584 Msa0880400:five_prime_UTR 55.0%
GCCCTTGATTGCAGCTCATC+CGG + chr6_1:26980587-26980606 None:intergenic 55.0%
GCCCTCAGTTGCAGCGTATC+CGG + chr6_1:26975179-26975198 None:intergenic 60.0%
!! ACCGGTTCGGCCCCAAATTC+GGG - chr6_1:26975253-26975272 Msa0880400:intron 60.0%
AGGTTCCTGCTGGGACGTCT+AGG - chr6_1:26975282-26975301 Msa0880400:intron 60.0%
GGTTCCTGCTGGGACGTCTA+GGG - chr6_1:26975283-26975302 Msa0880400:intron 60.0%
! GGACGTCTAGGGCCCATGTT+TGG - chr6_1:26975294-26975313 Msa0880400:intron 60.0%
TGGCGGTCGGCAGTTGAACT+CGG + chr6_1:26975321-26975340 None:intergenic 60.0%
! GCCACACGGTGTAGGAGCAT+CGG - chr6_1:26975360-26975379 Msa0880400:intron 60.0%
ACCGATGCTCCTACACCGTG+TGG + chr6_1:26975364-26975383 None:intergenic 60.0%
!! CCCACTGGGAGCATCTCCAA+TGG - chr6_1:26979576-26979595 Msa0880400:intron 60.0%
CCCATTGGAGATGCTCCCAG+TGG + chr6_1:26979580-26979599 None:intergenic 60.0%
!! CTGGGAGCATCTCCAATGGG+GGG - chr6_1:26979580-26979599 Msa0880400:intron 60.0%
CCCCGTTAAGGACCCTCCAT+TGG - chr6_1:26979625-26979644 Msa0880400:intron 60.0%
GTGGGACCCGTTAGTTACCC+AGG + chr6_1:26979709-26979728 None:intergenic 60.0%
GAGGGCTCCACCGCAATCAC+CGG - chr6_1:26975193-26975212 Msa0880400:intron 65.0%
! GCCCGAATTTGGGGCCGAAC+CGG + chr6_1:26975257-26975276 None:intergenic 65.0%
GCCCCAAATTCGGGCAGCTG+AGG - chr6_1:26975262-26975281 Msa0880400:intron 65.0%
GGGCAGCTGAGGTTCCTGCT+GGG - chr6_1:26975273-26975292 Msa0880400:intron 65.0%
GGCGGTCGGCAGTTGAACTC+GGG + chr6_1:26975320-26975339 None:intergenic 65.0%
TGGCCAGCAGGCATTCCCAG+GGG + chr6_1:26975344-26975363 None:intergenic 65.0%
GTGGCCAGCAGGCATTCCCA+GGG + chr6_1:26975345-26975364 None:intergenic 65.0%
TGTGGCCAGCAGGCATTCCC+AGG + chr6_1:26975346-26975365 None:intergenic 65.0%
GGGAATGCCTGCTGGCCACA+CGG - chr6_1:26975346-26975365 Msa0880400:intron 65.0%
TCCTACACCGTGTGGCCAGC+AGG + chr6_1:26975356-26975375 None:intergenic 65.0%
CTCGTCGGCGAAGCTTCCGA+CGG + chr6_1:26976658-26976677 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG + chr6_1:26979623-26979642 None:intergenic 65.0%
CGGGCAGCTGAGGTTCCTGC+TGG - chr6_1:26975272-26975291 Msa0880400:intron 70.0%
TGGGCCCTAGACGTCCCAGC+AGG + chr6_1:26975290-26975309 None:intergenic 70.0%
AACTGCCGACCGCCACCCCT+GGG - chr6_1:26975326-26975345 Msa0880400:intron 70.0%
! GCATTCCCAGGGGTGGCGGT+CGG + chr6_1:26975334-26975353 None:intergenic 70.0%
GCAGGCATTCCCAGGGGTGG+CGG + chr6_1:26975338-26975357 None:intergenic 70.0%
CCAGCAGGCATTCCCAGGGG+TGG + chr6_1:26975341-26975360 None:intergenic 70.0%
CCACCCCTGGGAATGCCTGC+TGG - chr6_1:26975338-26975357 Msa0880400:intron 70.0%
GCCTGCTGGCCACACGGTGT+AGG - chr6_1:26975352-26975371 Msa0880400:intron 70.0%
!! ATCTCCGGCATCGGCGCCGT+CGG - chr6_1:26976639-26976658 Msa0880400:intron 70.0%
CAACTGCCGACCGCCACCCC+TGG - chr6_1:26975325-26975344 Msa0880400:intron 75.0%
!! GCTTCCGACGGCGCCGATGC+CGG + chr6_1:26976646-26976665 None:intergenic 75.0%
GGAAAGGGAAGCGGCGGCGC+CGG + chr6_1:26976805-26976824 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26974751 26980628 26974751 ID=Msa0880400;Name=Msa0880400
chr6_1 mRNA 26974751 26980628 26974751 ID=Msa0880400-mRNA-1;Parent=Msa0880400;Name=Msa0880400-mRNA-1;_AED=0.27;_eAED=0.44;_QI=253|0|0.5|1|0|0|2|0|38
chr6_1 exon 26974751 26974833 26974751 ID=Msa0880400-mRNA-1:exon:6597;Parent=Msa0880400-mRNA-1
chr6_1 exon 26980342 26980628 26980342 ID=Msa0880400-mRNA-1:exon:6596;Parent=Msa0880400-mRNA-1
chr6_1 five_prime_UTR 26980376 26980628 26980376 ID=Msa0880400-mRNA-1:five_prime_utr;Parent=Msa0880400-mRNA-1
chr6_1 CDS 26980342 26980375 26980342 ID=Msa0880400-mRNA-1:cds;Parent=Msa0880400-mRNA-1
chr6_1 CDS 26974751 26974833 26974751 ID=Msa0880400-mRNA-1:cds;Parent=Msa0880400-mRNA-1
Gene Sequence

>Msa0880400

ATGATAAGCGTCAGGGCAATTAGAATCCCTGCAGAACCAAGTGTGAATTCGGCAAGGGTTAGCGGGGGTTTACCGGATGAGCTGCAATCAAGGGCACCAGCACAATCACCAGTTTGA
Protein sequence

>Msa0880400

MISVRAIRIPAEPSVNSARVSGGLPDELQSRAPAQSPV*