AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412900 MtrunA17_Chr8g0380031 94.304 158 9 0 1 158 182 339 2.63e-104 305
Msa1412900 MtrunA17_Chr2g0284951 58.861 158 62 3 1 156 131 287 1.16e-56 182
Msa1412900 MtrunA17_Chr2g0284991 57.595 158 64 3 1 156 131 287 2.84e-55 178
Msa1412900 MtrunA17_Chr2g0285001 52.381 168 76 4 1 166 132 297 5.29e-50 165
Msa1412900 MtrunA17_Chr2g0284921 52.667 150 69 2 1 149 134 282 1.24e-46 155
Msa1412900 MtrunA17_Chr3g0085881 46.552 174 87 3 1 172 130 299 2.38e-46 155
Msa1412900 MtrunA17_Chr2g0284941 53.205 156 50 3 1 154 131 265 2.22e-44 149
Msa1412900 MtrunA17_Chr8g0380041 43.396 159 89 1 4 161 131 289 1.27e-41 142
Msa1412900 MtrunA17_Chr3g0086641 42.069 145 82 2 4 147 139 282 5.86e-38 133
Msa1412900 MtrunA17_Chr2g0285061 38.889 144 87 1 4 146 133 276 2.61e-34 124
Msa1412900 MtrunA17_Chr3g0077571 42.069 145 81 3 4 148 130 271 6.01e-32 117
Msa1412900 MtrunA17_Chr2g0284931 40.132 152 72 2 1 151 10 143 2.57e-31 112
Msa1412900 MtrunA17_Chr3g0077581 40.157 127 74 2 22 146 157 283 2.86e-27 105
Msa1412900 MtrunA17_Chr4g0017431 33.333 147 98 0 1 147 130 276 3.27e-26 102
Msa1412900 MtrunA17_Chr5g0438641 35.811 148 91 2 4 150 135 279 5.40e-25 99.0
Msa1412900 MtrunA17_Chr3g0131321 36.170 141 90 0 4 144 139 279 1.39e-24 98.2
Msa1412900 MtrunA17_Chr2g0285041 56.410 78 33 1 1 77 47 124 1.90e-24 92.8
Msa1412900 MtrunA17_Chr6g0459921 34.815 135 86 2 10 143 139 272 3.41e-23 94.0
Msa1412900 MtrunA17_Chr6g0455661 35.556 135 85 2 10 143 250 383 4.57e-23 94.7
Msa1412900 MtrunA17_Chr5g0434621 35.821 134 81 3 15 147 140 269 2.25e-22 91.7
Msa1412900 MtrunA17_Chr7g0275021 32.653 147 98 1 4 150 137 282 4.45e-22 91.3
Msa1412900 MtrunA17_Chr3g0120861 32.317 164 101 3 4 160 141 301 6.46e-22 90.5
Msa1412900 MtrunA17_Chr7g0274991 32.639 144 96 1 4 147 136 278 1.06e-20 87.4
Msa1412900 MtrunA17_Chr7g0215961 31.081 148 101 1 1 148 120 266 1.25e-20 87.0
Msa1412900 MtrunA17_Chr4g0068441 30.952 168 115 1 1 167 133 300 1.40e-20 87.0
Msa1412900 MtrunA17_Chr5g0438621 36.154 130 79 2 19 147 148 274 1.57e-20 86.7
Msa1412900 MtrunA17_Chr6g0457921 30.345 145 100 1 4 148 133 276 2.28e-20 86.3
Msa1412900 MtrunA17_Chr1g0189901 29.252 147 103 1 1 147 131 276 2.03e-19 84.0
Msa1412900 MtrunA17_Chr4g0008851 30.986 142 97 1 4 145 135 275 5.68e-19 82.8
Msa1412900 MtrunA17_Chr7g0275011 29.861 144 100 1 4 147 137 279 5.84e-19 82.4
Msa1412900 MtrunA17_Chr8g0374101 29.054 148 103 2 1 146 140 287 9.25e-19 82.0
Msa1412900 MtrunA17_Chr3g0105401 34.328 134 87 1 4 137 131 263 1.54e-18 81.3
Msa1412900 MtrunA17_Chr5g0405821 30.769 143 97 1 4 146 148 288 1.69e-18 81.3
Msa1412900 MtrunA17_Chr4g0060811 36.364 132 77 3 15 144 143 269 1.77e-18 81.3
Msa1412900 MtrunA17_Chr3g0092131 31.818 154 92 4 15 160 139 287 3.60e-18 80.5
Msa1412900 MtrunA17_Chr1g0156921 28.571 147 96 2 4 146 145 286 4.02e-18 80.1
Msa1412900 MtrunA17_Chr2g0320671 32.117 137 89 2 4 139 133 266 5.26e-18 79.7
Msa1412900 MtrunA17_Chr7g0275001 27.692 130 94 0 14 143 138 267 1.09e-17 79.0
Msa1412900 MtrunA17_Chr2g0330781 33.333 144 92 2 4 146 134 274 1.19e-17 79.0
Msa1412900 MtrunA17_Chr2g0294301 28.873 142 100 1 4 144 136 277 7.84e-17 76.6
Msa1412900 MtrunA17_Chr5g0396511 27.972 143 102 1 4 146 149 290 7.97e-17 76.6
Msa1412900 MtrunA17_Chr4g0027571 27.972 143 101 1 4 146 3 143 1.10e-16 74.7
Msa1412900 MtrunA17_Chr1g0156911 26.712 146 105 1 1 146 137 280 1.17e-16 76.3
Msa1412900 MtrunA17_Chr1g0182811 30.370 135 92 2 14 147 147 280 1.36e-16 75.9
Msa1412900 MtrunA17_Chr5g0405831 27.273 143 102 1 4 146 147 287 1.94e-16 75.5
Msa1412900 MtrunA17_Chr1g0189931 29.104 134 94 1 14 147 145 277 2.83e-16 75.1
Msa1412900 MtrunA17_Chr8g0341001 28.671 143 100 1 4 146 135 275 3.26e-16 74.7
Msa1412900 MtrunA17_Chr5g0438631 30.714 140 92 3 4 141 131 267 4.08e-16 74.3
Msa1412900 MtrunA17_Chr1g0156901 26.506 166 114 2 1 160 150 313 7.98e-16 73.9
Msa1412900 MtrunA17_Chr1g0189891 28.671 143 101 1 4 146 133 274 9.71e-16 73.6
Msa1412900 MtrunA17_Chr5g0432101 29.054 148 100 3 1 146 133 277 2.05e-15 72.8
Msa1412900 MtrunA17_Chr8g0349301 29.861 144 92 2 4 146 136 271 2.34e-15 72.0
Msa1412900 MtrunA17_Chr8g0371491 30.000 140 96 1 4 143 139 276 2.36e-15 72.4
Msa1412900 MtrunA17_Chr8g0371471 26.056 142 103 1 4 145 144 283 2.41e-15 72.4
Msa1412900 MtrunA17_Chr2g0294311 27.083 144 104 1 4 147 143 285 4.05e-15 72.0
Msa1412900 MtrunA17_Chr1g0156891 29.371 143 99 1 4 146 147 287 8.28e-15 70.9
Msa1412900 MtrunA17_Chr2g0301641 28.966 145 98 3 4 147 143 283 8.38e-15 70.9
Msa1412900 MtrunA17_Chr8g0371481 22.981 161 117 2 4 158 144 303 8.41e-15 70.9
Msa1412900 MtrunA17_Chr5g0444401 27.068 133 91 2 4 136 138 264 3.35e-14 69.3
Msa1412900 MtrunA17_Chr8g0344931 30.000 140 95 2 4 142 137 274 5.54e-14 68.6
Msa1412900 MtrunA17_Chr1g0156931 26.712 146 104 1 1 146 141 283 7.95e-14 68.2
Msa1412900 MtrunA17_Chr8g0349321 27.143 140 93 2 4 142 137 268 9.23e-14 67.8
Msa1412900 MtrunA17_Chr3g0142921 31.193 109 73 1 38 146 174 280 2.05e-13 67.0
Msa1412900 MtrunA17_Chr3g0099161 31.126 151 85 5 2 142 196 337 2.99e-13 66.6
Msa1412900 MtrunA17_Chr8g0370961 26.667 150 97 3 1 147 17 156 5.42e-13 64.7
Msa1412900 MtrunA17_Chr8g0344941 28.788 132 92 1 11 142 148 277 6.57e-13 65.5
Msa1412900 MtrunA17_Chr3g0099151 29.078 141 90 3 3 139 192 326 7.64e-13 65.5
Msa1412900 MtrunA17_Chr4g0027521 30.147 136 90 3 4 137 130 262 9.80e-13 65.1
Msa1412900 MtrunA17_Chr8g0349341 28.767 146 91 3 4 146 137 272 1.09e-12 64.7
Msa1412900 MtrunA17_Chr2g0283191 26.950 141 96 3 4 140 144 281 1.57e-12 64.3
Msa1412900 MtrunA17_Chr3g0085231 31.967 122 77 3 23 142 153 270 2.19e-12 63.9
Msa1412900 MtrunA17_Chr3g0099231 25.735 136 89 3 4 136 137 263 4.58e-12 63.2
Msa1412900 MtrunA17_Chr4g0046151 27.826 115 76 3 4 114 139 250 1.15e-11 62.0
Msa1412900 MtrunA17_Chr3g0142941 26.506 166 114 2 1 160 147 310 2.08e-11 61.2
Msa1412900 MtrunA17_Chr6g0450721 29.710 138 80 4 26 156 161 288 2.73e-11 60.8
Msa1412900 MtrunA17_Chr8g0370981 26.582 158 110 2 4 161 153 304 2.80e-11 60.8
Msa1412900 MtrunA17_Chr1g0157001 24.848 165 116 3 1 162 137 296 3.44e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412900 AT1G29670.1 42.466 146 80 3 4 147 132 275 1.18e-35 127
Msa1412900 AT2G19050.2 46.721 122 64 1 25 146 147 267 2.44e-35 125
Msa1412900 AT1G29670.2 40.000 160 92 3 4 161 200 357 4.32e-35 127
Msa1412900 AT2G19050.1 42.361 144 79 2 25 168 147 286 6.83e-35 125
Msa1412900 AT4G18970.1 39.310 145 87 1 4 147 129 273 1.29e-34 124
Msa1412900 AT5G45670.1 37.931 145 89 1 4 147 130 274 2.53e-34 124
Msa1412900 AT1G29660.1 37.931 145 89 1 4 147 132 276 3.16e-34 124
Msa1412900 AT4G18970.2 39.310 145 87 1 4 147 129 273 3.81e-34 124
Msa1412900 AT1G71691.1 35.849 159 98 4 4 161 54 209 2.24e-30 112
Msa1412900 AT1G71691.3 35.849 159 98 4 4 161 155 310 2.77e-30 112
Msa1412900 AT1G33811.1 36.601 153 91 4 1 147 132 284 4.18e-30 113
Msa1412900 AT1G71691.2 35.849 159 98 4 4 161 155 310 1.17e-29 112
Msa1412900 AT2G19060.1 44.715 123 65 3 26 146 147 268 5.88e-29 109
Msa1412900 AT5G15720.2 41.129 124 72 1 24 146 153 276 4.04e-28 107
Msa1412900 AT5G15720.3 41.129 124 72 1 24 146 122 245 6.84e-28 106
Msa1412900 AT5G15720.1 41.129 124 72 1 24 146 153 276 1.53e-27 106
Msa1412900 AT5G08460.1 34.247 146 95 1 1 145 149 294 3.82e-27 105
Msa1412900 AT2G19010.1 37.762 143 82 2 4 146 131 266 1.15e-26 103
Msa1412900 AT2G19010.2 37.762 143 82 2 4 146 161 296 1.66e-26 103
Msa1412900 AT4G30140.1 39.098 133 74 2 4 136 134 259 1.69e-23 95.1
Msa1412900 AT2G04570.1 33.784 148 86 3 4 146 131 271 2.98e-23 94.4
Msa1412900 AT2G42990.1 34.722 144 90 2 4 146 131 271 6.04e-23 93.6
Msa1412900 AT4G28780.1 30.612 147 101 1 1 147 131 276 3.79e-22 91.7
Msa1412900 AT4G26790.1 32.544 169 102 3 4 171 132 289 1.73e-21 89.7
Msa1412900 AT4G26790.2 32.544 169 102 3 4 171 132 289 1.73e-21 89.7
Msa1412900 AT5G37690.2 37.778 135 77 4 15 147 134 263 1.24e-20 87.4
Msa1412900 AT5G37690.1 37.778 135 77 4 15 147 142 271 1.51e-20 87.0
Msa1412900 AT3G50400.1 32.215 149 98 3 1 146 137 285 1.75e-19 84.3
Msa1412900 AT5G33370.2 29.167 144 101 1 4 147 133 275 4.12e-19 83.2
Msa1412900 AT3G04290.1 29.167 144 101 1 4 147 132 274 5.71e-19 82.8
Msa1412900 AT5G33370.1 29.167 144 101 1 4 147 133 275 6.98e-19 82.8
Msa1412900 AT5G18430.1 27.451 153 111 0 4 156 132 284 8.80e-19 82.4
Msa1412900 AT2G23540.1 30.405 148 101 2 1 146 151 298 2.59e-18 81.3
Msa1412900 AT1G71250.1 28.472 144 103 0 4 147 143 286 5.66e-18 80.1
Msa1412900 AT1G75880.1 29.861 144 97 2 4 146 156 296 7.02e-18 80.1
Msa1412900 AT1G75880.2 29.861 144 97 2 4 146 155 295 8.59e-18 79.7
Msa1412900 AT3G14820.1 32.877 146 92 2 1 146 132 271 3.40e-16 75.1
Msa1412900 AT3G16370.1 29.167 144 98 2 4 146 133 273 6.55e-16 74.3
Msa1412900 AT1G74460.1 31.538 130 86 2 15 144 139 265 8.59e-16 73.9
Msa1412900 AT5G41890.1 31.884 138 88 3 15 147 148 284 3.29e-15 72.4
Msa1412900 AT5G22810.1 29.070 172 107 5 4 171 137 297 6.83e-15 71.6
Msa1412900 AT3G53100.1 27.419 124 88 1 4 127 132 253 7.56e-15 71.2
Msa1412900 AT3G43550.1 33.333 144 89 3 4 146 133 270 1.22e-14 70.1
Msa1412900 AT5G42170.1 30.769 143 94 1 4 146 153 290 1.91e-14 70.5
Msa1412900 AT1G58430.1 29.710 138 87 4 12 144 147 279 2.20e-14 70.1
Msa1412900 AT1G20120.1 26.712 146 105 1 1 146 178 321 2.33e-14 70.1
Msa1412900 AT1G23500.1 32.800 125 77 2 23 146 158 276 2.35e-14 70.1
Msa1412900 AT1G53920.1 25.899 139 99 1 4 142 149 283 2.51e-14 70.1
Msa1412900 AT5G03820.2 27.972 143 97 3 4 143 164 303 6.02e-14 68.9
Msa1412900 AT5G03820.1 27.972 143 97 3 4 143 136 275 6.20e-14 68.9
Msa1412900 AT1G59406.1 32.639 144 90 3 4 146 133 270 8.55e-14 68.6
Msa1412900 AT1G59030.1 32.639 144 90 3 4 146 133 270 8.55e-14 68.6
Msa1412900 AT1G58725.1 32.639 144 90 3 4 146 133 270 8.55e-14 68.6
Msa1412900 AT1G75890.3 27.083 144 101 2 4 146 180 320 1.16e-13 68.2
Msa1412900 AT2G24560.2 27.857 140 91 4 12 146 146 280 1.19e-13 67.8
Msa1412900 AT5G03810.1 27.465 142 98 3 4 143 133 271 1.28e-13 67.8
Msa1412900 AT1G75890.1 27.083 144 101 2 4 146 164 304 1.31e-13 67.8
Msa1412900 AT1G75890.2 27.083 144 101 2 4 146 151 291 1.36e-13 67.8
Msa1412900 AT1G58520.3 31.944 144 91 3 4 146 133 270 1.75e-13 67.4
Msa1412900 AT1G58525.1 31.944 144 91 3 4 146 133 270 1.75e-13 67.4
Msa1412900 AT2G24560.1 27.857 140 91 4 12 146 146 280 1.87e-13 67.4
Msa1412900 AT1G75900.1 28.671 143 99 1 4 146 146 285 1.91e-13 67.4
Msa1412900 AT1G20135.1 30.645 124 82 2 23 146 152 271 4.43e-13 66.2
Msa1412900 AT4G10950.1 22.759 145 111 1 2 146 168 311 6.45e-13 65.9
Msa1412900 AT4G10950.2 22.759 145 111 1 2 146 172 315 6.81e-13 65.9
Msa1412900 AT1G20132.1 30.070 143 98 1 4 146 164 304 3.38e-12 63.9
Msa1412900 AT1G06990.1 27.206 136 93 3 12 144 148 280 3.41e-12 63.9
Msa1412900 AT1G20130.1 28.966 145 98 2 17 161 330 469 5.29e-12 63.5
Msa1412900 AT1G20130.2 28.873 142 96 2 20 161 313 449 6.28e-12 63.2
Msa1412900 AT2G31550.1 26.812 138 91 4 12 144 6 138 7.07e-12 62.0
Msa1412900 AT5G63170.1 29.365 126 82 3 22 146 150 269 7.81e-12 62.8
Msa1412900 AT3G14225.1 23.944 142 106 1 1 142 140 279 1.28e-11 62.4
Msa1412900 AT3G14225.2 23.944 142 106 1 1 142 136 275 1.42e-11 62.0
Msa1412900 AT2G31540.1 26.812 138 91 4 12 144 147 279 2.49e-11 61.2

Find 48 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAAGTTTCTTAGCAATT+TGG 0.150765 tig0023973:-601 None:intergenic
TTAAATAAGTTGATAATTCT+TGG 0.175695 tig0023973:-766 None:intergenic
AGAATTATCAACTTATTTAA+AGG 0.193593 tig0023973:+769 Msa1412900:CDS
TACTATTGCAGCTGAACTTT+TGG 0.238383 tig0023973:+239 None:intergenic
TTAGTTGGATTAGGCCTATT+AGG 0.251903 tig0023973:+1859 Msa1412900:CDS
TGCAACCCCATGCTGATATC+TGG 0.302214 tig0023973:-551 None:intergenic
TCCAAGTTTCTTAGCAATTT+GGG 0.315256 tig0023973:-600 None:intergenic
ACTGTTAATGAAGATGAATT+TGG 0.317652 tig0023973:-2016 None:intergenic
GTAGTGTACTTTCCCTTAGT+TGG 0.347173 tig0023973:-719 None:intergenic
TTGCATAAGGTGGGATAAAA+TGG 0.379618 tig0023973:-268 None:intergenic
TGTTTGTATTATGTGAATAT+AGG 0.383615 tig0023973:+653 Msa1412900:CDS
CATGTGGAACGCAACCTAAT+AGG 0.400237 tig0023973:-1873 None:intergenic
TCCCAAATTGCTAAGAAACT+TGG 0.412235 tig0023973:+599 Msa1412900:CDS
GCAGGGATCCGCAATGAGAC+TGG 0.431672 tig0023973:+340 Msa1412900:five_prime_UTR
AATTATGCATCCGGTGCAGC+AGG 0.432883 tig0023973:+322 Msa1412900:five_prime_UTR
GTGGCAGGAGGTAATTGTTA+AGG 0.435398 tig0023973:-688 None:intergenic
GAGCAGGCTATACATGGGCT+TGG 0.450690 tig0023973:+1820 Msa1412900:intron
GCCACAACATTATCCAACTA+AGG 0.457173 tig0023973:+706 Msa1412900:CDS
CCATGGTGCAGACATAGTTC+AGG 0.466464 tig0023973:+295 Msa1412900:five_prime_UTR
CCCTTAGTTGGATAATGTTG+TGG 0.474895 tig0023973:-707 None:intergenic
ATTGCGGATCCCTGCTGCAC+CGG 0.476096 tig0023973:-332 None:intergenic
CTGAACTATGTCTGCACCAT+GGG 0.476540 tig0023973:-294 None:intergenic
TCAGGTGTTAATTATGCATC+CGG 0.479190 tig0023973:+313 Msa1412900:five_prime_UTR
GTGCATGAGCAGGCTATACA+TGG 0.486706 tig0023973:+1814 Msa1412900:intron
GCACCATGGGTATTTGCATA+AGG 0.496690 tig0023973:-281 None:intergenic
CATAATACAAACACTTATTG+AGG 0.505100 tig0023973:-643 None:intergenic
TAGTTGGATAATGTTGTGGC+AGG 0.511070 tig0023973:-703 None:intergenic
TTAAAGAAGTTTATATCAGA+CGG 0.512348 tig0023973:-2245 None:intergenic
CCACATGAAATTACTACCCA+TGG 0.513056 tig0023973:+1889 Msa1412900:CDS
CCATGGGTATTTGCATAAGG+TGG 0.517638 tig0023973:-278 None:intergenic
CAATGAGACTGGAACACACT+TGG 0.529479 tig0023973:+351 Msa1412900:five_prime_UTR
CAGGGTCCAGATATCAGCAT+GGG 0.559625 tig0023973:+545 Msa1412900:intron
CCATGGGTAGTAATTTCATG+TGG 0.578722 tig0023973:-1889 None:intergenic
TTGGATAATGTTGTGGCAGG+AGG 0.581762 tig0023973:-700 None:intergenic
CCACAACATTATCCAACTAA+GGG 0.595461 tig0023973:+707 Msa1412900:CDS
CACATGAAATTACTACCCAT+GGG 0.599197 tig0023973:+1890 Msa1412900:CDS
CATGGGTATTTGCATAAGGT+GGG 0.600399 tig0023973:-277 None:intergenic
CCTGAACTATGTCTGCACCA+TGG 0.600473 tig0023973:-295 None:intergenic
CCACCTTATGCAAATACCCA+TGG 0.606787 tig0023973:+278 Msa1412900:five_prime_UTR
ACATAGTCAGTTAAGCTACC+AGG 0.613327 tig0023973:+2050 Msa1412900:CDS
TTTATTCAAACGATCAACGA+GGG 0.616697 tig0023973:-1980 None:intergenic
TGATTCAAGGTGTATTCAAG+AGG 0.623109 tig0023973:+1918 Msa1412900:CDS
CCAGGGTCCAGATATCAGCA+TGG 0.646651 tig0023973:+544 Msa1412900:intron
CTTTATTCAAACGATCAACG+AGG 0.650020 tig0023973:-1981 None:intergenic
ATTATGCATCCGGTGCAGCA+GGG 0.675210 tig0023973:+323 Msa1412900:five_prime_UTR
TGCATGAGCAGGCTATACAT+GGG 0.691621 tig0023973:+1815 Msa1412900:intron
AGGGTCCAGATATCAGCATG+GGG 0.720526 tig0023973:+546 Msa1412900:intron
AGTGTGTTCCAGTCTCATTG+CGG 0.749177 tig0023973:-348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATAAGTTGATAATTCT+TGG - tig0023973:769-788 None:intergenic 15.0%
!! AGAATTATCAACTTATTTAA+AGG + tig0023973:769-788 Msa1412900:CDS 15.0%
!!! TTAAATAAGTTGATAATTCT+TGG - tig0023973:769-788 None:intergenic 15.0%
!! AGAATTATCAACTTATTTAA+AGG + tig0023973:769-788 Msa1412900:CDS 15.0%
!! TGTTTGTATTATGTGAATAT+AGG + tig0023973:653-672 Msa1412900:CDS 20.0%
!!! CTTTTTAACACACTTTTTAT+TGG - tig0023973:977-996 None:intergenic 20.0%
!!! GCGTAATTCTTAATTTTTAT+TGG + tig0023973:1008-1027 Msa1412900:intron 20.0%
!! CTAAATAGAAAGGTAAAAAA+TGG - tig0023973:1052-1071 None:intergenic 20.0%
!! GAAAATCAAACTAAATAGAA+AGG - tig0023973:1062-1081 None:intergenic 20.0%
!!! GTTTGATTTTCTTTTTGTTT+AGG + tig0023973:1071-1090 Msa1412900:intron 20.0%
!!! TTTTAGTTTTTTTTTGGGAT+TGG + tig0023973:1113-1132 Msa1412900:intron 20.0%
!!! TATGGACTATTATGTTATAT+TGG + tig0023973:1136-1155 Msa1412900:intron 20.0%
!!! ATGGACTATTATGTTATATT+GGG + tig0023973:1137-1156 Msa1412900:intron 20.0%
!! CTGATACAATATTGTATATT+AGG + tig0023973:1162-1181 Msa1412900:intron 20.0%
!! TATGAAATCCAAAAAATGTA+AGG + tig0023973:1567-1586 Msa1412900:intron 20.0%
!! TAAAAAATGTTTCAAATACC+TGG - tig0023973:2071-2090 None:intergenic 20.0%
!!! ATGATTGGTATATTTGTTAT+CGG - tig0023973:2096-2115 None:intergenic 20.0%
!!! TATTATAGTTTTTCTTCCAA+AGG + tig0023973:2202-2221 Msa1412900:intron 20.0%
!! TTAAAGAAGTTTATATCAGA+CGG - tig0023973:2248-2267 None:intergenic 20.0%
!! TGTTTGTATTATGTGAATAT+AGG + tig0023973:653-672 Msa1412900:CDS 20.0%
!!! CTTTTTAACACACTTTTTAT+TGG - tig0023973:977-996 None:intergenic 20.0%
!!! GCGTAATTCTTAATTTTTAT+TGG + tig0023973:1008-1027 Msa1412900:intron 20.0%
!! CTAAATAGAAAGGTAAAAAA+TGG - tig0023973:1052-1071 None:intergenic 20.0%
!! GAAAATCAAACTAAATAGAA+AGG - tig0023973:1062-1081 None:intergenic 20.0%
!!! GTTTGATTTTCTTTTTGTTT+AGG + tig0023973:1071-1090 Msa1412900:intron 20.0%
!!! TTTTAGTTTTTTTTTGGGAT+TGG + tig0023973:1113-1132 Msa1412900:intron 20.0%
!!! TATGGACTATTATGTTATAT+TGG + tig0023973:1136-1155 Msa1412900:intron 20.0%
!!! ATGGACTATTATGTTATATT+GGG + tig0023973:1137-1156 Msa1412900:intron 20.0%
!! CTGATACAATATTGTATATT+AGG + tig0023973:1162-1181 Msa1412900:intron 20.0%
!! TATGAAATCCAAAAAATGTA+AGG + tig0023973:1567-1586 Msa1412900:intron 20.0%
!! TAAAAAATGTTTCAAATACC+TGG - tig0023973:2071-2090 None:intergenic 20.0%
!!! ATGATTGGTATATTTGTTAT+CGG - tig0023973:2096-2115 None:intergenic 20.0%
!!! TATTATAGTTTTTCTTCCAA+AGG + tig0023973:2202-2221 Msa1412900:intron 20.0%
!! TTAAAGAAGTTTATATCAGA+CGG - tig0023973:2248-2267 None:intergenic 20.0%
! ATCTTACAAAGACATGTATA+AGG - tig0023973:485-504 None:intergenic 25.0%
! CACAAATTTATTAGTCACTT+TGG + tig0023973:510-529 Msa1412900:intron 25.0%
! CATAATACAAACACTTATTG+AGG - tig0023973:646-665 None:intergenic 25.0%
! TTTCAAAAGTTAGAACCATT+TGG + tig0023973:826-845 Msa1412900:intron 25.0%
! CCTCAAAAACTAATTTAACT+GGG - tig0023973:858-877 None:intergenic 25.0%
!!! CCAGTTAAATTAGTTTTTGA+GGG + tig0023973:856-875 Msa1412900:intron 25.0%
! GAATCAATTTGAATTTCAAC+TGG - tig0023973:906-925 None:intergenic 25.0%
! TAAATCCCGCTAAATTTATT+GGG - tig0023973:945-964 None:intergenic 25.0%
!!! GGAGTAGATTTTAAGATAAT+CGG + tig0023973:1407-1426 Msa1412900:intron 25.0%
!!! GAGTAGATTTTAAGATAATC+GGG + tig0023973:1408-1427 Msa1412900:intron 25.0%
! TATATGCCATTAGATCATAT+TGG + tig0023973:1464-1483 Msa1412900:intron 25.0%
! TAATCCGAACTAAATGTAAA+GGG - tig0023973:1549-1568 None:intergenic 25.0%
! ATAATCCGAACTAAATGTAA+AGG - tig0023973:1550-1569 None:intergenic 25.0%
!!! AAAAAATGTAAGGTGTTGAA+GGG + tig0023973:1577-1596 Msa1412900:intron 25.0%
! TACATGTGATAATTCATTCA+TGG - tig0023973:1697-1716 None:intergenic 25.0%
! ATGAATGAATTATCACATGT+AGG + tig0023973:1696-1715 Msa1412900:intron 25.0%
!! AAGTTTTCTTTAGTTGGATT+AGG + tig0023973:1850-1869 Msa1412900:CDS 25.0%
! ACTGTTAATGAAGATGAATT+TGG - tig0023973:2019-2038 None:intergenic 25.0%
! AAATATACCAATCATTTGAC+AGG + tig0023973:2101-2120 Msa1412900:intron 25.0%
! AATATACCAATCATTTGACA+GGG + tig0023973:2102-2121 Msa1412900:intron 25.0%
! ATTGAATGTTCATGTTTCAA+AGG - tig0023973:2167-2186 None:intergenic 25.0%
! CATGAACATTCAATAGTTTA+TGG + tig0023973:2173-2192 Msa1412900:intron 25.0%
! ATCTTACAAAGACATGTATA+AGG - tig0023973:485-504 None:intergenic 25.0%
! CACAAATTTATTAGTCACTT+TGG + tig0023973:510-529 Msa1412900:intron 25.0%
! CATAATACAAACACTTATTG+AGG - tig0023973:646-665 None:intergenic 25.0%
! TTTCAAAAGTTAGAACCATT+TGG + tig0023973:826-845 Msa1412900:intron 25.0%
! CCTCAAAAACTAATTTAACT+GGG - tig0023973:858-877 None:intergenic 25.0%
!!! CCAGTTAAATTAGTTTTTGA+GGG + tig0023973:856-875 Msa1412900:intron 25.0%
! GAATCAATTTGAATTTCAAC+TGG - tig0023973:906-925 None:intergenic 25.0%
! TAAATCCCGCTAAATTTATT+GGG - tig0023973:945-964 None:intergenic 25.0%
!!! GGAGTAGATTTTAAGATAAT+CGG + tig0023973:1407-1426 Msa1412900:intron 25.0%
!!! GAGTAGATTTTAAGATAATC+GGG + tig0023973:1408-1427 Msa1412900:intron 25.0%
! TATATGCCATTAGATCATAT+TGG + tig0023973:1464-1483 Msa1412900:intron 25.0%
! TAATCCGAACTAAATGTAAA+GGG - tig0023973:1549-1568 None:intergenic 25.0%
! ATAATCCGAACTAAATGTAA+AGG - tig0023973:1550-1569 None:intergenic 25.0%
!!! AAAAAATGTAAGGTGTTGAA+GGG + tig0023973:1577-1596 Msa1412900:intron 25.0%
! TACATGTGATAATTCATTCA+TGG - tig0023973:1697-1716 None:intergenic 25.0%
! ATGAATGAATTATCACATGT+AGG + tig0023973:1696-1715 Msa1412900:intron 25.0%
!! AAGTTTTCTTTAGTTGGATT+AGG + tig0023973:1850-1869 Msa1412900:CDS 25.0%
! ACTGTTAATGAAGATGAATT+TGG - tig0023973:2019-2038 None:intergenic 25.0%
! AAATATACCAATCATTTGAC+AGG + tig0023973:2101-2120 Msa1412900:intron 25.0%
! AATATACCAATCATTTGACA+GGG + tig0023973:2102-2121 Msa1412900:intron 25.0%
! ATTGAATGTTCATGTTTCAA+AGG - tig0023973:2167-2186 None:intergenic 25.0%
! CATGAACATTCAATAGTTTA+TGG + tig0023973:2173-2192 Msa1412900:intron 25.0%
TCCAAGTTTCTTAGCAATTT+GGG - tig0023973:603-622 None:intergenic 30.0%
ATCCAAGTTTCTTAGCAATT+TGG - tig0023973:604-623 None:intergenic 30.0%
!!! CCCAGTTAAATTAGTTTTTG+AGG + tig0023973:855-874 Msa1412900:intron 30.0%
CCCTCAAAAACTAATTTAAC+TGG - tig0023973:859-878 None:intergenic 30.0%
GTAGATCCCAATAAATTTAG+CGG + tig0023973:936-955 Msa1412900:intron 30.0%
TAGATCCCAATAAATTTAGC+GGG + tig0023973:937-956 Msa1412900:intron 30.0%
GTAAATCCCGCTAAATTTAT+TGG - tig0023973:946-965 None:intergenic 30.0%
!!! GTTTTTTTTTGGGATTGGTA+TGG + tig0023973:1118-1137 Msa1412900:intron 30.0%
! AGCTTCCAAAGTAATTTTAG+CGG - tig0023973:1203-1222 None:intergenic 30.0%
TTTCCCTATTCGAAATTACA+GGG - tig0023973:1345-1364 None:intergenic 30.0%
! TTTTCCCTATTCGAAATTAC+AGG - tig0023973:1346-1365 None:intergenic 30.0%
!!! ATTTTAAGATAATCGGGTGT+AGG + tig0023973:1414-1433 Msa1412900:intron 30.0%
TAGAGACCAATATGATCTAA+TGG - tig0023973:1473-1492 None:intergenic 30.0%
!!! CTTCAACACCTTACATTTTT+TGG - tig0023973:1578-1597 None:intergenic 30.0%
!! CAAAAAATGTAAGGTGTTGA+AGG + tig0023973:1576-1595 Msa1412900:intron 30.0%
AGTGAGTGTATACTATAAAG+TGG - tig0023973:1670-1689 None:intergenic 30.0%
! GCAAGAAAGTTTTCTTTAGT+TGG + tig0023973:1844-1863 Msa1412900:CDS 30.0%
TTTATTCAAACGATCAACGA+GGG - tig0023973:1983-2002 None:intergenic 30.0%
!!! AAAGGCATTCTTTTGGTATT+AGG - tig0023973:2149-2168 None:intergenic 30.0%
!!! ATGTTTCAAAGGCATTCTTT+TGG - tig0023973:2156-2175 None:intergenic 30.0%
! TATAGTTTTTCTTCCAAAGG+TGG + tig0023973:2205-2224 Msa1412900:intron 30.0%
AAACTTATAAAAGCCACCTT+TGG - tig0023973:2221-2240 None:intergenic 30.0%
TCCAAGTTTCTTAGCAATTT+GGG - tig0023973:603-622 None:intergenic 30.0%
ATCCAAGTTTCTTAGCAATT+TGG - tig0023973:604-623 None:intergenic 30.0%
!!! CCCAGTTAAATTAGTTTTTG+AGG + tig0023973:855-874 Msa1412900:intron 30.0%
CCCTCAAAAACTAATTTAAC+TGG - tig0023973:859-878 None:intergenic 30.0%
GTAGATCCCAATAAATTTAG+CGG + tig0023973:936-955 Msa1412900:intron 30.0%
TAGATCCCAATAAATTTAGC+GGG + tig0023973:937-956 Msa1412900:intron 30.0%
GTAAATCCCGCTAAATTTAT+TGG - tig0023973:946-965 None:intergenic 30.0%
!!! GTTTTTTTTTGGGATTGGTA+TGG + tig0023973:1118-1137 Msa1412900:intron 30.0%
! AGCTTCCAAAGTAATTTTAG+CGG - tig0023973:1203-1222 None:intergenic 30.0%
TTTCCCTATTCGAAATTACA+GGG - tig0023973:1345-1364 None:intergenic 30.0%
! TTTTCCCTATTCGAAATTAC+AGG - tig0023973:1346-1365 None:intergenic 30.0%
!!! ATTTTAAGATAATCGGGTGT+AGG + tig0023973:1414-1433 Msa1412900:intron 30.0%
TAGAGACCAATATGATCTAA+TGG - tig0023973:1473-1492 None:intergenic 30.0%
!!! CTTCAACACCTTACATTTTT+TGG - tig0023973:1578-1597 None:intergenic 30.0%
!! CAAAAAATGTAAGGTGTTGA+AGG + tig0023973:1576-1595 Msa1412900:intron 30.0%
AGTGAGTGTATACTATAAAG+TGG - tig0023973:1670-1689 None:intergenic 30.0%
! GCAAGAAAGTTTTCTTTAGT+TGG + tig0023973:1844-1863 Msa1412900:CDS 30.0%
TTTATTCAAACGATCAACGA+GGG - tig0023973:1983-2002 None:intergenic 30.0%
!!! AAAGGCATTCTTTTGGTATT+AGG - tig0023973:2149-2168 None:intergenic 30.0%
!!! ATGTTTCAAAGGCATTCTTT+TGG - tig0023973:2156-2175 None:intergenic 30.0%
! TATAGTTTTTCTTCCAAAGG+TGG + tig0023973:2205-2224 Msa1412900:intron 30.0%
AAACTTATAAAAGCCACCTT+TGG - tig0023973:2221-2240 None:intergenic 30.0%
TTGCATAAGGTGGGATAAAA+TGG - tig0023973:271-290 None:intergenic 35.0%
TCAGGTGTTAATTATGCATC+CGG + tig0023973:313-332 Msa1412900:five_prime_UTR 35.0%
TCCCAAATTGCTAAGAAACT+TGG + tig0023973:599-618 Msa1412900:CDS 35.0%
CCACAACATTATCCAACTAA+GGG + tig0023973:707-726 Msa1412900:CDS 35.0%
CAAACCCGCTAAAATTACTT+TGG + tig0023973:1195-1214 Msa1412900:intron 35.0%
!! GCTTCCAAAGTAATTTTAGC+GGG - tig0023973:1202-1221 None:intergenic 35.0%
ACACCCTGTAATTTCGAATA+GGG + tig0023973:1339-1358 Msa1412900:intron 35.0%
ACATCCGGATGAATAAATCT+GGG + tig0023973:1382-1401 Msa1412900:intron 35.0%
!!! TAGGAAGCTCCCTTTTTTTT+TGG + tig0023973:1433-1452 Msa1412900:intron 35.0%
!!! AGGAAGCTCCCTTTTTTTTT+GGG + tig0023973:1434-1453 Msa1412900:intron 35.0%
ACCAATCCCCCAAAAAAAAA+GGG - tig0023973:1445-1464 None:intergenic 35.0%
TACCAATCCCCCAAAAAAAA+AGG - tig0023973:1446-1465 None:intergenic 35.0%
CTGTAGAACTTGTAGTAATG+TGG + tig0023973:1499-1518 Msa1412900:intron 35.0%
TAGGAGTTTACATCACTTGT+AGG + tig0023973:1715-1734 Msa1412900:intron 35.0%
! TTAGTTGGATTAGGCCTATT+AGG + tig0023973:1859-1878 Msa1412900:CDS 35.0%
CACATGAAATTACTACCCAT+GGG + tig0023973:1890-1909 Msa1412900:CDS 35.0%
!! CCTTGAATCATTTTTCCCAT+GGG - tig0023973:1908-1927 None:intergenic 35.0%
!! ACCTTGAATCATTTTTCCCA+TGG - tig0023973:1909-1928 None:intergenic 35.0%
TGATTCAAGGTGTATTCAAG+AGG + tig0023973:1918-1937 Msa1412900:CDS 35.0%
CTTTATTCAAACGATCAACG+AGG - tig0023973:1984-2003 None:intergenic 35.0%
TTGCATAAGGTGGGATAAAA+TGG - tig0023973:271-290 None:intergenic 35.0%
TCAGGTGTTAATTATGCATC+CGG + tig0023973:313-332 Msa1412900:five_prime_UTR 35.0%
TCCCAAATTGCTAAGAAACT+TGG + tig0023973:599-618 Msa1412900:CDS 35.0%
CCACAACATTATCCAACTAA+GGG + tig0023973:707-726 Msa1412900:CDS 35.0%
CAAACCCGCTAAAATTACTT+TGG + tig0023973:1195-1214 Msa1412900:intron 35.0%
!! GCTTCCAAAGTAATTTTAGC+GGG - tig0023973:1202-1221 None:intergenic 35.0%
ACACCCTGTAATTTCGAATA+GGG + tig0023973:1339-1358 Msa1412900:intron 35.0%
ACATCCGGATGAATAAATCT+GGG + tig0023973:1382-1401 Msa1412900:intron 35.0%
!!! TAGGAAGCTCCCTTTTTTTT+TGG + tig0023973:1433-1452 Msa1412900:intron 35.0%
!!! AGGAAGCTCCCTTTTTTTTT+GGG + tig0023973:1434-1453 Msa1412900:intron 35.0%
ACCAATCCCCCAAAAAAAAA+GGG - tig0023973:1445-1464 None:intergenic 35.0%
TACCAATCCCCCAAAAAAAA+AGG - tig0023973:1446-1465 None:intergenic 35.0%
CTGTAGAACTTGTAGTAATG+TGG + tig0023973:1499-1518 Msa1412900:intron 35.0%
TAGGAGTTTACATCACTTGT+AGG + tig0023973:1715-1734 Msa1412900:intron 35.0%
! TTAGTTGGATTAGGCCTATT+AGG + tig0023973:1859-1878 Msa1412900:CDS 35.0%
CACATGAAATTACTACCCAT+GGG + tig0023973:1890-1909 Msa1412900:CDS 35.0%
!! CCTTGAATCATTTTTCCCAT+GGG - tig0023973:1908-1927 None:intergenic 35.0%
!! ACCTTGAATCATTTTTCCCA+TGG - tig0023973:1909-1928 None:intergenic 35.0%
TGATTCAAGGTGTATTCAAG+AGG + tig0023973:1918-1937 Msa1412900:CDS 35.0%
CTTTATTCAAACGATCAACG+AGG - tig0023973:1984-2003 None:intergenic 35.0%
CATGGGTATTTGCATAAGGT+GGG - tig0023973:280-299 None:intergenic 40.0%
!! ACTTTGGCAATGTTGATTCC+AGG + tig0023973:526-545 Msa1412900:intron 40.0%
!! CTTTGGCAATGTTGATTCCA+GGG + tig0023973:527-546 Msa1412900:intron 40.0%
TAGTTGGATAATGTTGTGGC+AGG - tig0023973:706-725 None:intergenic 40.0%
GCCACAACATTATCCAACTA+AGG + tig0023973:706-725 Msa1412900:CDS 40.0%
CCCTTAGTTGGATAATGTTG+TGG - tig0023973:710-729 None:intergenic 40.0%
GTAGTGTACTTTCCCTTAGT+TGG - tig0023973:722-741 None:intergenic 40.0%
CACACCCTGTAATTTCGAAT+AGG + tig0023973:1338-1357 Msa1412900:intron 40.0%
CACATCCGGATGAATAAATC+TGG + tig0023973:1381-1400 Msa1412900:intron 40.0%
!!! GGAAGCTCCCTTTTTTTTTG+GGG + tig0023973:1435-1454 Msa1412900:intron 40.0%
!!! GAAGCTCCCTTTTTTTTTGG+GGG + tig0023973:1436-1455 Msa1412900:intron 40.0%
!!! TCCCTTTTTTTTTGGGGGAT+TGG + tig0023973:1441-1460 Msa1412900:intron 40.0%
CGCACCCTTTACATTTAGTT+CGG + tig0023973:1542-1561 Msa1412900:intron 40.0%
CCATGGGTAGTAATTTCATG+TGG - tig0023973:1892-1911 None:intergenic 40.0%
CCACATGAAATTACTACCCA+TGG + tig0023973:1889-1908 Msa1412900:CDS 40.0%
CCCATGGGAAAAATGATTCA+AGG + tig0023973:1905-1924 Msa1412900:CDS 40.0%
ACATAGTCAGTTAAGCTACC+AGG + tig0023973:2050-2069 Msa1412900:CDS 40.0%
CTTCAACCCTGTCAAATGAT+TGG - tig0023973:2111-2130 None:intergenic 40.0%
CATGGGTATTTGCATAAGGT+GGG - tig0023973:280-299 None:intergenic 40.0%
!! ACTTTGGCAATGTTGATTCC+AGG + tig0023973:526-545 Msa1412900:intron 40.0%
!! CTTTGGCAATGTTGATTCCA+GGG + tig0023973:527-546 Msa1412900:intron 40.0%
TAGTTGGATAATGTTGTGGC+AGG - tig0023973:706-725 None:intergenic 40.0%
GCCACAACATTATCCAACTA+AGG + tig0023973:706-725 Msa1412900:CDS 40.0%
CCCTTAGTTGGATAATGTTG+TGG - tig0023973:710-729 None:intergenic 40.0%
GTAGTGTACTTTCCCTTAGT+TGG - tig0023973:722-741 None:intergenic 40.0%
CACACCCTGTAATTTCGAAT+AGG + tig0023973:1338-1357 Msa1412900:intron 40.0%
CACATCCGGATGAATAAATC+TGG + tig0023973:1381-1400 Msa1412900:intron 40.0%
!!! GGAAGCTCCCTTTTTTTTTG+GGG + tig0023973:1435-1454 Msa1412900:intron 40.0%
!!! GAAGCTCCCTTTTTTTTTGG+GGG + tig0023973:1436-1455 Msa1412900:intron 40.0%
!!! TCCCTTTTTTTTTGGGGGAT+TGG + tig0023973:1441-1460 Msa1412900:intron 40.0%
CGCACCCTTTACATTTAGTT+CGG + tig0023973:1542-1561 Msa1412900:intron 40.0%
CCATGGGTAGTAATTTCATG+TGG - tig0023973:1892-1911 None:intergenic 40.0%
CCACATGAAATTACTACCCA+TGG + tig0023973:1889-1908 Msa1412900:CDS 40.0%
CCCATGGGAAAAATGATTCA+AGG + tig0023973:1905-1924 Msa1412900:CDS 40.0%
ACATAGTCAGTTAAGCTACC+AGG + tig0023973:2050-2069 Msa1412900:CDS 40.0%
CTTCAACCCTGTCAAATGAT+TGG - tig0023973:2111-2130 None:intergenic 40.0%
CCATGGGTATTTGCATAAGG+TGG - tig0023973:281-300 None:intergenic 45.0%
CCACCTTATGCAAATACCCA+TGG + tig0023973:278-297 Msa1412900:five_prime_UTR 45.0%
GCACCATGGGTATTTGCATA+AGG - tig0023973:284-303 None:intergenic 45.0%
CTGAACTATGTCTGCACCAT+GGG - tig0023973:297-316 None:intergenic 45.0%
AGTGTGTTCCAGTCTCATTG+CGG - tig0023973:351-370 None:intergenic 45.0%
CAATGAGACTGGAACACACT+TGG + tig0023973:351-370 Msa1412900:five_prime_UTR 45.0%
GTGGCAGGAGGTAATTGTTA+AGG - tig0023973:691-710 None:intergenic 45.0%
TTGGATAATGTTGTGGCAGG+AGG - tig0023973:703-722 None:intergenic 45.0%
TTAACTGGGCAGAGTCCAAA+TGG - tig0023973:844-863 None:intergenic 45.0%
TCATCGTTTCTTCGCACATC+CGG + tig0023973:1367-1386 Msa1412900:intron 45.0%
TCCGGATGAATAAATCTGGG+TGG + tig0023973:1385-1404 Msa1412900:intron 45.0%
CCCACCCAGATTTATTCATC+CGG - tig0023973:1389-1408 None:intergenic 45.0%
CCGGATGAATAAATCTGGGT+GGG + tig0023973:1386-1405 Msa1412900:intron 45.0%
! TAGAGCGCTTGAGAACTAGT+AGG + tig0023973:1625-1644 Msa1412900:intron 45.0%
ATTTGTGTGAGTGCATGAGC+AGG + tig0023973:1804-1823 Msa1412900:intron 45.0%
TGCATGAGCAGGCTATACAT+GGG + tig0023973:1815-1834 Msa1412900:intron 45.0%
CATGTGGAACGCAACCTAAT+AGG - tig0023973:1876-1895 None:intergenic 45.0%
CCATGGGTATTTGCATAAGG+TGG - tig0023973:281-300 None:intergenic 45.0%
CCACCTTATGCAAATACCCA+TGG + tig0023973:278-297 Msa1412900:five_prime_UTR 45.0%
GCACCATGGGTATTTGCATA+AGG - tig0023973:284-303 None:intergenic 45.0%
CTGAACTATGTCTGCACCAT+GGG - tig0023973:297-316 None:intergenic 45.0%
AGTGTGTTCCAGTCTCATTG+CGG - tig0023973:351-370 None:intergenic 45.0%
CAATGAGACTGGAACACACT+TGG + tig0023973:351-370 Msa1412900:five_prime_UTR 45.0%
GTGGCAGGAGGTAATTGTTA+AGG - tig0023973:691-710 None:intergenic 45.0%
TTGGATAATGTTGTGGCAGG+AGG - tig0023973:703-722 None:intergenic 45.0%
TTAACTGGGCAGAGTCCAAA+TGG - tig0023973:844-863 None:intergenic 45.0%
TCATCGTTTCTTCGCACATC+CGG + tig0023973:1367-1386 Msa1412900:intron 45.0%
TCCGGATGAATAAATCTGGG+TGG + tig0023973:1385-1404 Msa1412900:intron 45.0%
CCCACCCAGATTTATTCATC+CGG - tig0023973:1389-1408 None:intergenic 45.0%
CCGGATGAATAAATCTGGGT+GGG + tig0023973:1386-1405 Msa1412900:intron 45.0%
! TAGAGCGCTTGAGAACTAGT+AGG + tig0023973:1625-1644 Msa1412900:intron 45.0%
ATTTGTGTGAGTGCATGAGC+AGG + tig0023973:1804-1823 Msa1412900:intron 45.0%
TGCATGAGCAGGCTATACAT+GGG + tig0023973:1815-1834 Msa1412900:intron 45.0%
CATGTGGAACGCAACCTAAT+AGG - tig0023973:1876-1895 None:intergenic 45.0%
!!! ATTATATTTATCTTAAATTT+TGG + tig0023973:398-417 Msa1412900:intron 5.0%
!!! ATTTATTTTTAGTTTTTTTT+TGG + tig0023973:1107-1126 Msa1412900:intron 5.0%
!!! TTTATTTTTAGTTTTTTTTT+GGG + tig0023973:1108-1127 Msa1412900:intron 5.0%
!!! ATTATATTTATCTTAAATTT+TGG + tig0023973:398-417 Msa1412900:intron 5.0%
!!! ATTTATTTTTAGTTTTTTTT+TGG + tig0023973:1107-1126 Msa1412900:intron 5.0%
!!! TTTATTTTTAGTTTTTTTTT+GGG + tig0023973:1108-1127 Msa1412900:intron 5.0%
CCTGAACTATGTCTGCACCA+TGG - tig0023973:298-317 None:intergenic 50.0%
CCATGGTGCAGACATAGTTC+AGG + tig0023973:295-314 Msa1412900:five_prime_UTR 50.0%
AATTATGCATCCGGTGCAGC+AGG + tig0023973:322-341 Msa1412900:five_prime_UTR 50.0%
ATTATGCATCCGGTGCAGCA+GGG + tig0023973:323-342 Msa1412900:five_prime_UTR 50.0%
CAGGGTCCAGATATCAGCAT+GGG + tig0023973:545-564 Msa1412900:intron 50.0%
AGGGTCCAGATATCAGCATG+GGG + tig0023973:546-565 Msa1412900:intron 50.0%
TGCAACCCCATGCTGATATC+TGG - tig0023973:554-573 None:intergenic 50.0%
GTGCATGAGCAGGCTATACA+TGG + tig0023973:1814-1833 Msa1412900:intron 50.0%
CCTGAACTATGTCTGCACCA+TGG - tig0023973:298-317 None:intergenic 50.0%
CCATGGTGCAGACATAGTTC+AGG + tig0023973:295-314 Msa1412900:five_prime_UTR 50.0%
AATTATGCATCCGGTGCAGC+AGG + tig0023973:322-341 Msa1412900:five_prime_UTR 50.0%
ATTATGCATCCGGTGCAGCA+GGG + tig0023973:323-342 Msa1412900:five_prime_UTR 50.0%
CAGGGTCCAGATATCAGCAT+GGG + tig0023973:545-564 Msa1412900:intron 50.0%
AGGGTCCAGATATCAGCATG+GGG + tig0023973:546-565 Msa1412900:intron 50.0%
TGCAACCCCATGCTGATATC+TGG - tig0023973:554-573 None:intergenic 50.0%
GTGCATGAGCAGGCTATACA+TGG + tig0023973:1814-1833 Msa1412900:intron 50.0%
CCATGCTGATATCTGGACCC+TGG - tig0023973:547-566 None:intergenic 55.0%
CCAGGGTCCAGATATCAGCA+TGG + tig0023973:544-563 Msa1412900:intron 55.0%
GAGCAGGCTATACATGGGCT+TGG + tig0023973:1820-1839 Msa1412900:intron 55.0%
CCATGCTGATATCTGGACCC+TGG - tig0023973:547-566 None:intergenic 55.0%
CCAGGGTCCAGATATCAGCA+TGG + tig0023973:544-563 Msa1412900:intron 55.0%
GAGCAGGCTATACATGGGCT+TGG + tig0023973:1820-1839 Msa1412900:intron 55.0%
ATTGCGGATCCCTGCTGCAC+CGG - tig0023973:335-354 None:intergenic 60.0%
GCAGGGATCCGCAATGAGAC+TGG + tig0023973:340-359 Msa1412900:five_prime_UTR 60.0%
ATTGCGGATCCCTGCTGCAC+CGG - tig0023973:335-354 None:intergenic 60.0%
GCAGGGATCCGCAATGAGAC+TGG + tig0023973:340-359 Msa1412900:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0023973 gene 250 2271 250 ID=Msa1412900;Name=Msa1412900
tig0023973 mRNA 250 2271 250 ID=Msa1412900-mRNA-1;Parent=Msa1412900;Name=Msa1412900-mRNA-1;_AED=0.27;_eAED=0.27;_QI=138|0.66|0.75|0.75|1|0.75|4|0|174
tig0023973 exon 250 372 250 ID=Msa1412900-mRNA-1:exon:20869;Parent=Msa1412900-mRNA-1
tig0023973 exon 548 790 548 ID=Msa1412900-mRNA-1:exon:20870;Parent=Msa1412900-mRNA-1
tig0023973 exon 1826 2071 1826 ID=Msa1412900-mRNA-1:exon:20871;Parent=Msa1412900-mRNA-1
tig0023973 exon 2224 2271 2224 ID=Msa1412900-mRNA-1:exon:20872;Parent=Msa1412900-mRNA-1
tig0023973 five_prime_UTR 250 372 250 ID=Msa1412900-mRNA-1:five_prime_utr;Parent=Msa1412900-mRNA-1
tig0023973 five_prime_UTR 548 562 548 ID=Msa1412900-mRNA-1:five_prime_utr;Parent=Msa1412900-mRNA-1
tig0023973 CDS 563 790 563 ID=Msa1412900-mRNA-1:cds;Parent=Msa1412900-mRNA-1
tig0023973 CDS 1826 2071 1826 ID=Msa1412900-mRNA-1:cds;Parent=Msa1412900-mRNA-1
tig0023973 CDS 2224 2271 2224 ID=Msa1412900-mRNA-1:cds;Parent=Msa1412900-mRNA-1
Gene Sequence

>Msa1412900

ATGGGGTTGCAGTTACAACATCACACAGACATTGTTTCCCAAATTGCTAAGAAACTTGGATATGACAAAGTGCAACAACACCTCAATAAGTGTTTGTATTATGTGAATATAGGCAGCAATGATTACCTTAACAATTACCTCCTGCCACAACATTATCCAACTAAGGGAAAGTACACTACTGATCAGTATGCTGCAGCTCTTGTCCAAGAATTATCAACTTATTTAAAGGCTATACATGGGCTTGGAGCAAGAAAGTTTTCTTTAGTTGGATTAGGCCTATTAGGTTGCGTTCCACATGAAATTACTACCCATGGGAAAAATGATTCAAGGTGTATTCAAGAGGAGAATAATGCAGCACTACTTTTCAATGACAAACTTAAAGCCCTCGTTGATCGTTTGAATAAAGAATTAACTGATTCCAAATTCATCTTCATTAACAGTGCTGTCATAAGACATAGTCAGTTAAGCTACCAGGTGGCTTTTATAAGTTTTCATCCGTCTGATATAAACTTCTTTAAGAAA
Protein sequence

>Msa1412900

MGLQLQHHTDIVSQIAKKLGYDKVQQHLNKCLYYVNIGSNDYLNNYLLPQHYPTKGKYTTDQYAAALVQELSTYLKAIHGLGARKFSLVGLGLLGCVPHEITTHGKNDSRCIQEENNAALLFNDKLKALVDRLNKELTDSKFIFINSAVIRHSQLSYQVAFISFHPSDINFFKK