AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413390 MtrunA17_Chr4g0076891 95.033 302 10 1 1 297 1 302 0.0 581
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413390 AT2G02570.1 66.667 297 85 3 12 297 6 299 2.24e-143 405
Msa1413390 AT2G02570.4 66.667 297 85 3 12 297 6 299 2.24e-143 405
Msa1413390 AT2G02570.2 66.667 297 85 3 12 297 6 299 2.24e-143 405
Msa1413390 AT2G02570.3 63.300 297 83 4 12 297 6 287 1.52e-132 378

Find 89 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCGCATCTTAGACTTAA+AGG 0.209233 tig0024026:-43108 None:intergenic
TGTGGGTGGGTGTTGGAGAT+TGG 0.224072 tig0024026:-41374 None:intergenic
GTGGGTGGGTGTTGGAGATT+GGG 0.293108 tig0024026:-41373 None:intergenic
GGCTCTATACGAAGCTTTGC+AGG 0.323302 tig0024026:-42802 None:intergenic
TCCTGTTGGCACCAGAGTTC+AGG 0.328664 tig0024026:+41527 Msa1413390:CDS
TCAACAGTTCCTTCTTGAAT+TGG 0.334241 tig0024026:-42679 None:intergenic
CTTCAAGATTGGTTTCTTCT+CGG 0.338340 tig0024026:+43811 Msa1413390:intron
AGAAGGAACTGTTGATCCTT+TGG 0.344531 tig0024026:+42687 Msa1413390:CDS
AAGTGTTGCACATACATAAA+AGG 0.361047 tig0024026:-44121 None:intergenic
TGTTGGAGATTGGGTGGAAG+TGG 0.361676 tig0024026:-41364 None:intergenic
CAAGGAAAGGTTGGTGTGAC+TGG 0.362128 tig0024026:+43875 Msa1413390:CDS
TTACAAACAACAACTTCATC+AGG 0.389377 tig0024026:+40728 Msa1413390:CDS
CATACAATCGAAGGGCTAAC+TGG 0.395003 tig0024026:-43989 None:intergenic
CAAACAGCCTCTACAGTGAT+TGG 0.395110 tig0024026:-44029 None:intergenic
CAACAGGAAATTTGTGTTGA+TGG 0.395602 tig0024026:-41512 None:intergenic
ACCTTTCCTTGAGGATCATC+AGG 0.403855 tig0024026:-43863 None:intergenic
AACACCCACCCACAATAAAC+TGG 0.407152 tig0024026:+41383 Msa1413390:CDS
AAGGTTGGTGTGACTGGAAG+TGG 0.416029 tig0024026:+43881 Msa1413390:CDS
TTGAATTGGCCTTATGTTAG+CGG 0.420910 tig0024026:-42665 None:intergenic
CAGGCTGTTTATAGTGATGA+TGG 0.431282 tig0024026:+41546 Msa1413390:CDS
GCCTGAACTCTGGTGCCAAC+AGG 0.438372 tig0024026:-41528 None:intergenic
TTCAAGATTGGTTTCTTCTC+GGG 0.438391 tig0024026:+43812 Msa1413390:intron
ATGTATGTGCAACACTTACA+TGG 0.439586 tig0024026:+44127 Msa1413390:three_prime_UTR
AGTTTATTGTGGGTGGGTGT+TGG 0.447717 tig0024026:-41381 None:intergenic
ACACAACTCACCACATCCTC+AGG 0.452174 tig0024026:-42832 None:intergenic
ACCACATCCTCAGGGTCATC+GGG 0.452351 tig0024026:-42823 None:intergenic
GTTGGAGATTGGGTGGAAGT+GGG 0.456301 tig0024026:-41363 None:intergenic
AAGAAGATGCAAGGTGGTAG+CGG 0.461653 tig0024026:+40648 Msa1413390:exon
TTGTTTGTAAGTAGAAAGAT+TGG 0.462862 tig0024026:-40715 None:intergenic
TACAATCGAGAATGATGATT+AGG 0.470705 tig0024026:+43958 Msa1413390:CDS
TAGCTGACATAATAACCATT+TGG 0.474920 tig0024026:-41603 None:intergenic
CACCACATCCTCAGGGTCAT+CGG 0.475099 tig0024026:-42824 None:intergenic
GGTGTGACTGGAAGTGGGAA+AGG 0.475251 tig0024026:+43887 Msa1413390:CDS
AGGTAGATCCCGCTAACATA+AGG 0.476232 tig0024026:+42656 Msa1413390:intron
TCGACATACTCAGAATTAGA+TGG 0.482981 tig0024026:-40870 None:intergenic
TGAATTGGCCTTATGTTAGC+GGG 0.489549 tig0024026:-42664 None:intergenic
ATTATGTCAGCTATGACACT+TGG 0.510217 tig0024026:+41613 Msa1413390:CDS
GTCGAGGCTTACACACCAAA+TGG 0.519193 tig0024026:+41588 Msa1413390:CDS
AAAATAAGCGGCAAAATGCT+TGG 0.521225 tig0024026:+43150 Msa1413390:CDS
AGGCTGTTTATAGTGATGAT+GGG 0.524754 tig0024026:+41547 Msa1413390:CDS
CGTACATACCAGTTTATTGT+GGG 0.530390 tig0024026:-41391 None:intergenic
AGAAGATGCAAGGTGGTAGC+GGG 0.534654 tig0024026:+40649 Msa1413390:exon
TTATGTCAGCTATGACACTT+GGG 0.535353 tig0024026:+41614 Msa1413390:CDS
ACATACCAGTTTATTGTGGG+TGG 0.536199 tig0024026:-41388 None:intergenic
AGTTGCTGAAGCTACAAAGC+AGG 0.562918 tig0024026:+42723 Msa1413390:CDS
TCCTGATGATCCTCAAGGAA+AGG 0.563297 tig0024026:+43862 Msa1413390:CDS
CTACAAAGCAGGCTATCAAA+CGG 0.564191 tig0024026:+42734 Msa1413390:CDS
GGTGGGTGTTGGAGATTGGG+TGG 0.565121 tig0024026:-41370 None:intergenic
ACGTACATACCAGTTTATTG+TGG 0.565424 tig0024026:-41392 None:intergenic
ACTATAAACAGCCTGAACTC+TGG 0.565916 tig0024026:-41538 None:intergenic
ATAAAGAGAAAGAAGATGCA+AGG 0.565982 tig0024026:+40639 Msa1413390:exon
AAATCTCCTGATGATCCTCA+AGG 0.567592 tig0024026:+43857 Msa1413390:CDS
GCAAGGTGGTAGCGGGCGTG+AGG 0.569536 tig0024026:+40656 Msa1413390:CDS
CAAACGGAAAATTGCGCAAG+CGG 0.570501 tig0024026:+42750 Msa1413390:CDS
CATCAACACAAATTTCCTGT+TGG 0.571494 tig0024026:+41513 Msa1413390:CDS
GATGATCCTCAAGGAAAGGT+TGG 0.575071 tig0024026:+43866 Msa1413390:CDS
GCCCGATGACCCTGAGGATG+TGG 0.576654 tig0024026:+42822 Msa1413390:CDS
ATTTGTGTTGATGGTCAAAG+TGG 0.580757 tig0024026:-41503 None:intergenic
AACATAAGGCCAATTCAAGA+AGG 0.580826 tig0024026:+42670 Msa1413390:CDS
ATTTGGTGTGTAAGCCTCGA+CGG 0.580845 tig0024026:-41586 None:intergenic
TTTATAGTGATGATGGGGAG+TGG 0.581469 tig0024026:+41553 Msa1413390:CDS
GGCTGTTTATAGTGATGATG+GGG 0.588465 tig0024026:+41548 Msa1413390:CDS
AGGTTGGTGTGACTGGAAGT+GGG 0.590449 tig0024026:+43882 Msa1413390:CDS
CATACCAGTTTATTGTGGGT+GGG 0.590879 tig0024026:-41387 None:intergenic
CAGCAGTTCCAGACAACCAA+GGG 0.593266 tig0024026:+43173 Msa1413390:CDS
GATGGTCAAAGTGGGTATGA+AGG 0.597115 tig0024026:-41494 None:intergenic
ACTCGCTCAGCTTCAACCAA+AGG 0.606860 tig0024026:-42703 None:intergenic
AGATTGGTTTCTTCTCGGGA+AGG 0.610846 tig0024026:+43816 Msa1413390:intron
AGTAAGTAAACGTGCGTGAG+GGG 0.615771 tig0024026:+40545 Msa1413390:five_prime_UTR
AAGTAAGTAAACGTGCGTGA+GGG 0.616814 tig0024026:+40544 Msa1413390:five_prime_UTR
AGGTGTGGTGCAGAAAGGAG+TGG 0.625574 tig0024026:+40466 None:intergenic
AAGAGAAAGAAGATGCAAGG+TGG 0.627035 tig0024026:+40642 Msa1413390:exon
TAAGTAAGTAAACGTGCGTG+AGG 0.627141 tig0024026:+40543 Msa1413390:five_prime_UTR
TTTGTGTTGATGGTCAAAGT+GGG 0.628380 tig0024026:-41502 None:intergenic
CACTTGGGGTAATAAAGAAG+AGG 0.630391 tig0024026:+41629 Msa1413390:CDS
TTGAAGTCACCCAAAATAAG+CGG 0.630424 tig0024026:+43138 Msa1413390:CDS
GCAGCAGTTCCAGACAACCA+AGG 0.644897 tig0024026:+43172 Msa1413390:CDS
TGTTACATACATACAATCGA+AGG 0.646002 tig0024026:-43998 None:intergenic
GCTCAAACCAATCACTGTAG+AGG 0.646028 tig0024026:+44022 Msa1413390:three_prime_UTR
CACAACTCACCACATCCTCA+GGG 0.646183 tig0024026:-42831 None:intergenic
TAATTCTGAGTATGTCGACA+TGG 0.651465 tig0024026:+40875 Msa1413390:CDS
CTTTAAGTCTAAGATGCGGA+TGG 0.652129 tig0024026:+43109 Msa1413390:CDS
GTTACATACATACAATCGAA+GGG 0.653029 tig0024026:-43997 None:intergenic
GTCACACCAACCTTTCCTTG+AGG 0.671537 tig0024026:-43872 None:intergenic
GTGGTATGATGCAACCGTCG+AGG 0.674698 tig0024026:+41572 Msa1413390:CDS
TATGTCAGCTATGACACTTG+GGG 0.685361 tig0024026:+41615 Msa1413390:CDS
ATGCCTTTAAGTCTAAGATG+CGG 0.694744 tig0024026:+43105 Msa1413390:CDS
TATAGAGCCCGATGACCCTG+AGG 0.709309 tig0024026:+42816 Msa1413390:CDS
CATGGAAAGAGAGCTCTCCG+AGG 0.756940 tig0024026:+40893 Msa1413390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTGTTAATTAAAAAT+GGG - tig0024026:41032-41051 None:intergenic 10.0%
!!! AATAAAAATGAATATTTTGT+AGG + tig0024026:42541-42560 Msa1413390:intron 10.0%
!!! ATAAAAATGAATATTTTGTA+GGG + tig0024026:42542-42561 Msa1413390:intron 10.0%
!! TTTATTGAAAAAAGAATATA+AGG + tig0024026:43669-43688 Msa1413390:intron 10.0%
!!! TTTCTTTGTTTGTTTTTTTA+GGG + tig0024026:40755-40774 Msa1413390:intron 15.0%
!!! GTTGTTATTATTAATTGAAT+GGG - tig0024026:41010-41029 None:intergenic 15.0%
!!! GTTTTCTTGTTAATTAAAAA+TGG - tig0024026:41033-41052 None:intergenic 15.0%
!! AAATAGATAAATAATGTTGT+TGG - tig0024026:41189-41208 None:intergenic 15.0%
!!! AAACTCATTATAAAATTTTC+TGG + tig0024026:41999-42018 Msa1413390:intron 15.0%
!!! AACAATAAAAAGTATTTTAC+TGG + tig0024026:42250-42269 Msa1413390:intron 15.0%
!!! TGGAGTATTTTTTTTTTATA+GGG - tig0024026:42583-42602 None:intergenic 15.0%
!!! CTATTTTAAGATTATTGTTT+TGG + tig0024026:44097-44116 Msa1413390:three_prime_UTR 15.0%
!!! GTTTCTTTGTTTGTTTTTTT+AGG + tig0024026:40754-40773 Msa1413390:intron 20.0%
!!! GGTTGTTATTATTAATTGAA+TGG - tig0024026:41011-41030 None:intergenic 20.0%
!! TAATTAATATTAGTGAGAGT+TGG - tig0024026:41238-41257 None:intergenic 20.0%
!! TAATGCAATGGTAAATAAAT+TGG - tig0024026:41730-41749 None:intergenic 20.0%
!! AACATGGAAAGAAAAAAAAA+AGG - tig0024026:41764-41783 None:intergenic 20.0%
!! TATAATGCTGAAGAAAAAAA+CGG - tig0024026:41928-41947 None:intergenic 20.0%
!!! ATTAATGTTTGCTATTGAAA+GGG + tig0024026:42336-42355 Msa1413390:intron 20.0%
!! AGAACACTTGTTTATATAAA+AGG - tig0024026:42448-42467 None:intergenic 20.0%
!!! TACCTGTTTTTATAAAATGT+AGG + tig0024026:42493-42512 Msa1413390:intron 20.0%
!!! ACCTGTTTTTATAAAATGTA+GGG + tig0024026:42494-42513 Msa1413390:intron 20.0%
!!! CTGGAGTATTTTTTTTTTAT+AGG - tig0024026:42584-42603 None:intergenic 20.0%
!! ATAAAAAAAAAATACTCCAG+TGG + tig0024026:42584-42603 Msa1413390:intron 20.0%
!!! GTCTTAATAAATATTTTCCT+TGG + tig0024026:42900-42919 Msa1413390:intron 20.0%
!!! AGCTAAAAAATATTTTCACA+TGG - tig0024026:43554-43573 None:intergenic 20.0%
!! ATATAAAACACAAATATCAG+TGG - tig0024026:43719-43738 None:intergenic 20.0%
! TTGTTTGTAAGTAGAAAGAT+TGG - tig0024026:40718-40737 None:intergenic 25.0%
!!! TTGTTTGTTTTTTTAGGGTT+AGG + tig0024026:40760-40779 Msa1413390:intron 25.0%
!!! TGTTTGTTTTTTTAGGGTTA+GGG + tig0024026:40761-40780 Msa1413390:intron 25.0%
! ATGAAAGAAAAGAAAAACCT+CGG - tig0024026:40913-40932 None:intergenic 25.0%
! GCTTCAAATTGAAATTGAAA+AGG + tig0024026:40967-40986 Msa1413390:intron 25.0%
! TGATGAGTAATGAATAGATT+CGG - tig0024026:41443-41462 None:intergenic 25.0%
!!! CTATGTTTTTCACTGTTTTT+AGG + tig0024026:41470-41489 Msa1413390:intron 25.0%
! TTCTCAACTAAACAAAAAAC+TGG - tig0024026:42103-42122 None:intergenic 25.0%
! TTAGTTGAGAAAAGAAATAG+AGG + tig0024026:42112-42131 Msa1413390:intron 25.0%
!!! CATTAATGTTTGCTATTGAA+AGG + tig0024026:42335-42354 Msa1413390:intron 25.0%
! GACAGATTCATAATTCTATA+GGG - tig0024026:42379-42398 None:intergenic 25.0%
! AGACAGATTCATAATTCTAT+AGG - tig0024026:42380-42399 None:intergenic 25.0%
!!! TCGTCCCTATATATATTTTT+TGG + tig0024026:42404-42423 Msa1413390:intron 25.0%
! GGGTCCAAAAAATATATATA+GGG - tig0024026:42411-42430 None:intergenic 25.0%
! AGGGTCCAAAAAATATATAT+AGG - tig0024026:42412-42431 None:intergenic 25.0%
! AAAAGGTAGGAAACTAAAAA+GGG - tig0024026:42431-42450 None:intergenic 25.0%
! TAAAAGGTAGGAAACTAAAA+AGG - tig0024026:42432-42451 None:intergenic 25.0%
! CACTTGTTTATATAAAAGGT+AGG - tig0024026:42444-42463 None:intergenic 25.0%
!!! CCTGTTTTTATAAAATGTAG+GGG + tig0024026:42495-42514 Msa1413390:intron 25.0%
!! TTTTCTGCAAATGTATTTCT+TGG + tig0024026:42966-42985 Msa1413390:intron 25.0%
! AATAGTAGAGAAATTGAGAA+AGG - tig0024026:43215-43234 None:intergenic 25.0%
! TATGTCTTAAAGTGACTAAT+GGG + tig0024026:43311-43330 Msa1413390:intron 25.0%
!! TAAATTCAACAACTTTTCCA+GGG - tig0024026:43653-43672 None:intergenic 25.0%
!! ATAAATTCAACAACTTTTCC+AGG - tig0024026:43654-43673 None:intergenic 25.0%
!! ATTGTGAAAATTCTAGAGAT+CGG - tig0024026:43696-43715 None:intergenic 25.0%
ATAAAGAGAAAGAAGATGCA+AGG + tig0024026:40639-40658 Msa1413390:exon 30.0%
TTACAAACAACAACTTCATC+AGG + tig0024026:40728-40747 Msa1413390:CDS 30.0%
!!! TTTTTTTAGGGTTAGGGTTA+GGG + tig0024026:40767-40786 Msa1413390:intron 30.0%
TGTTGTATGTATCTATCTCA+TGG - tig0024026:41138-41157 None:intergenic 30.0%
ATTTAAGGAGACATTGGAAT+TGG - tig0024026:41279-41298 None:intergenic 30.0%
TGTAGAATTTAAGGAGACAT+TGG - tig0024026:41285-41304 None:intergenic 30.0%
! TATTTCATTTTGCTTAGCAG+TGG - tig0024026:41343-41362 None:intergenic 30.0%
TAGCTGACATAATAACCATT+TGG - tig0024026:41606-41625 None:intergenic 30.0%
TGCAATGGTAAATAAATTGG+AGG - tig0024026:41727-41746 None:intergenic 30.0%
! AAGTTCTATGTGATTTTTGC+TGG + tig0024026:41817-41836 Msa1413390:intron 30.0%
! ATAAGTTGGAAATGCAATTG+TGG - tig0024026:41879-41898 None:intergenic 30.0%
ACAATACAGATGCAATAAGT+TGG - tig0024026:41893-41912 None:intergenic 30.0%
TGAGTATCAAATCATGTAAC+AGG + tig0024026:42032-42051 Msa1413390:intron 30.0%
TTGTTCTTTCCATTTCAACA+AGG - tig0024026:42235-42254 None:intergenic 30.0%
! CCCCTACATTTTATAAAAAC+AGG - tig0024026:42498-42517 None:intergenic 30.0%
AGGGGCTAAAAATTGTTTAT+AGG + tig0024026:42513-42532 Msa1413390:intron 30.0%
AAAATCAGTAACTAAACCAC+TGG - tig0024026:42603-42622 None:intergenic 30.0%
!!! GGTTTAGTTACTGATTTTCA+AGG + tig0024026:42605-42624 Msa1413390:intron 30.0%
! ATATGTTGCTTGCTTATTAC+AGG + tig0024026:42636-42655 Msa1413390:intron 30.0%
AGAAAACTGGCAGATAAATT+TGG - tig0024026:43021-43040 None:intergenic 30.0%
! AATTTATCTGCCAGTTTTCT+AGG + tig0024026:43021-43040 Msa1413390:intron 30.0%
! GTTAGCAAACATGTCATTTA+GGG - tig0024026:43050-43069 None:intergenic 30.0%
! AGTTAGCAAACATGTCATTT+AGG - tig0024026:43051-43070 None:intergenic 30.0%
TAGTTTCTATGCAAGAATGT+AGG + tig0024026:43277-43296 Msa1413390:intron 30.0%
GTATGTCTTAAAGTGACTAA+TGG + tig0024026:43310-43329 Msa1413390:intron 30.0%
TATGTTAGGATGGTCAAAAA+TGG - tig0024026:43352-43371 None:intergenic 30.0%
TATCATTGCAGTCATTAAGT+TGG + tig0024026:43472-43491 Msa1413390:intron 30.0%
AATCTATTTACCCCTTGAAT+CGG + tig0024026:43584-43603 Msa1413390:intron 30.0%
! TTGTGAAAATTCTAGAGATC+GGG - tig0024026:43695-43714 None:intergenic 30.0%
!!! AGAAAAGCATTTTCATCTGA+AGG + tig0024026:43931-43950 Msa1413390:CDS 30.0%
TACAATCGAGAATGATGATT+AGG + tig0024026:43958-43977 Msa1413390:CDS 30.0%
GTTACATACATACAATCGAA+GGG - tig0024026:44000-44019 None:intergenic 30.0%
TGTTACATACATACAATCGA+AGG - tig0024026:44001-44020 None:intergenic 30.0%
! AAGTGTTGCACATACATAAA+AGG - tig0024026:44124-44143 None:intergenic 30.0%
!!! GTTTTTTTAGGGTTAGGGTT+AGG + tig0024026:40766-40785 Msa1413390:intron 35.0%
! TTTGATTCCCTTCTCTTTTC+AGG + tig0024026:40824-40843 Msa1413390:intron 35.0%
TCTCTAACCTGAAAAGAGAA+GGG - tig0024026:40834-40853 None:intergenic 35.0%
TTCTCTAACCTGAAAAGAGA+AGG - tig0024026:40835-40854 None:intergenic 35.0%
TCGACATACTCAGAATTAGA+TGG - tig0024026:40873-40892 None:intergenic 35.0%
TAATTCTGAGTATGTCGACA+TGG + tig0024026:40875-40894 Msa1413390:CDS 35.0%
GCAAGATAGATAGAAGTGAT+GGG - tig0024026:41087-41106 None:intergenic 35.0%
AGCAAGATAGATAGAAGTGA+TGG - tig0024026:41088-41107 None:intergenic 35.0%
TGTATGTATCTATCTCATGG+CGG - tig0024026:41135-41154 None:intergenic 35.0%
TCCTTAAATTCTACAACACC+AGG + tig0024026:41290-41309 Msa1413390:intron 35.0%
!! ACCTGGTGTTGTAGAATTTA+AGG - tig0024026:41294-41313 None:intergenic 35.0%
CGTACATACCAGTTTATTGT+GGG - tig0024026:41394-41413 None:intergenic 35.0%
ACGTACATACCAGTTTATTG+TGG - tig0024026:41395-41414 None:intergenic 35.0%
!! TTTGTGTTGATGGTCAAAGT+GGG - tig0024026:41505-41524 None:intergenic 35.0%
!! ATTTGTGTTGATGGTCAAAG+TGG - tig0024026:41506-41525 None:intergenic 35.0%
CAACAGGAAATTTGTGTTGA+TGG - tig0024026:41515-41534 None:intergenic 35.0%
CATCAACACAAATTTCCTGT+TGG + tig0024026:41513-41532 Msa1413390:CDS 35.0%
AGGCTGTTTATAGTGATGAT+GGG + tig0024026:41547-41566 Msa1413390:CDS 35.0%
ATTATGTCAGCTATGACACT+TGG + tig0024026:41613-41632 Msa1413390:CDS 35.0%
TTATGTCAGCTATGACACTT+GGG + tig0024026:41614-41633 Msa1413390:CDS 35.0%
ATGTATGCAGATGTAATGCA+GGG - tig0024026:41701-41720 None:intergenic 35.0%
AATGTATGCAGATGTAATGC+AGG - tig0024026:41702-41721 None:intergenic 35.0%
GTACGACATAGATAATGCAA+TGG - tig0024026:41742-41761 None:intergenic 35.0%
CCAAATATATCATGCACTCA+TGG - tig0024026:41966-41985 None:intergenic 35.0%
CCATGAGTGCATGATATATT+TGG + tig0024026:41963-41982 Msa1413390:intron 35.0%
AACGCTTCAATAAACGTGAT+GGG - tig0024026:42078-42097 None:intergenic 35.0%
AAACGCTTCAATAAACGTGA+TGG - tig0024026:42079-42098 None:intergenic 35.0%
TAGAGGAATCACTTTATCCT+AGG + tig0024026:42129-42148 Msa1413390:intron 35.0%
AGAGGAATCACTTTATCCTA+GGG + tig0024026:42130-42149 Msa1413390:intron 35.0%
AGGAATGAGATTTCTCAACT+TGG - tig0024026:42166-42185 None:intergenic 35.0%
!! TTGAATTGGCCTTATGTTAG+CGG - tig0024026:42668-42687 None:intergenic 35.0%
AACATAAGGCCAATTCAAGA+AGG + tig0024026:42670-42689 Msa1413390:CDS 35.0%
TCAACAGTTCCTTCTTGAAT+TGG - tig0024026:42682-42701 None:intergenic 35.0%
!!! CATCTGTTGATTTTCAGTCA+CGG + tig0024026:42773-42792 Msa1413390:CDS 35.0%
TAGAACAAGAGATCAAACCA+AGG - tig0024026:42920-42939 None:intergenic 35.0%
GCAAATGTATTTCTTGGTAG+TGG + tig0024026:42972-42991 Msa1413390:intron 35.0%
TTTAGGGAATCCTAGAAAAC+TGG - tig0024026:43034-43053 None:intergenic 35.0%
! GGCATGTATTTTCTTACGTT+TGG - tig0024026:43090-43109 None:intergenic 35.0%
! ATGCCTTTAAGTCTAAGATG+CGG + tig0024026:43105-43124 Msa1413390:CDS 35.0%
TTGAAGTCACCCAAAATAAG+CGG + tig0024026:43138-43157 Msa1413390:CDS 35.0%
!! AGCATTTTGCCGCTTATTTT+GGG - tig0024026:43150-43169 None:intergenic 35.0%
!! AAGCATTTTGCCGCTTATTT+TGG - tig0024026:43151-43170 None:intergenic 35.0%
AAAATAAGCGGCAAAATGCT+TGG + tig0024026:43150-43169 Msa1413390:CDS 35.0%
AACCAAGGGAAAAGCAAAAA+AGG + tig0024026:43187-43206 Msa1413390:CDS 35.0%
!!! TACCTTTTTTGCTTTTCCCT+TGG - tig0024026:43192-43211 None:intergenic 35.0%
! TTGTAAGTTGGATAGGAATG+AGG + tig0024026:43607-43626 Msa1413390:intron 35.0%
AAAAGTAATACCATCAACCC+TGG + tig0024026:43633-43652 Msa1413390:intron 35.0%
! CTTTTGTGATGTATTCACTG+TGG + tig0024026:43783-43802 Msa1413390:intron 35.0%
!! CTTCAAGATTGGTTTCTTCT+CGG + tig0024026:43811-43830 Msa1413390:intron 35.0%
!! TTCAAGATTGGTTTCTTCTC+GGG + tig0024026:43812-43831 Msa1413390:intron 35.0%
! GAAAATGCTTTTCTCTTCTC+TGG - tig0024026:43925-43944 None:intergenic 35.0%
! AAGCATTTTCATCTGAAGGA+TGG + tig0024026:43935-43954 Msa1413390:CDS 35.0%
!! ATAGCATGCATTGTTTTGTC+TGG - tig0024026:44058-44077 None:intergenic 35.0%
ATGTATGTGCAACACTTACA+TGG + tig0024026:44127-44146 Msa1413390:three_prime_UTR 35.0%
TAAGTAAGTAAACGTGCGTG+AGG + tig0024026:40543-40562 Msa1413390:five_prime_UTR 40.0%
AAGTAAGTAAACGTGCGTGA+GGG + tig0024026:40544-40563 Msa1413390:five_prime_UTR 40.0%
AAGAGAAAGAAGATGCAAGG+TGG + tig0024026:40642-40661 Msa1413390:exon 40.0%
TATCTATCTTGCTTCTGTGC+AGG + tig0024026:41095-41114 Msa1413390:intron 40.0%
CATACCAGTTTATTGTGGGT+GGG - tig0024026:41390-41409 None:intergenic 40.0%
ACATACCAGTTTATTGTGGG+TGG - tig0024026:41391-41410 None:intergenic 40.0%
ACTATAAACAGCCTGAACTC+TGG - tig0024026:41541-41560 None:intergenic 40.0%
CAGGCTGTTTATAGTGATGA+TGG + tig0024026:41546-41565 Msa1413390:CDS 40.0%
! GGCTGTTTATAGTGATGATG+GGG + tig0024026:41548-41567 Msa1413390:CDS 40.0%
!! TTTATAGTGATGATGGGGAG+TGG + tig0024026:41553-41572 Msa1413390:CDS 40.0%
TATGTCAGCTATGACACTTG+GGG + tig0024026:41615-41634 Msa1413390:CDS 40.0%
CACTTGGGGTAATAAAGAAG+AGG + tig0024026:41629-41648 Msa1413390:CDS 40.0%
TTGATGCAATCCTAGTCCTA+TGG + tig0024026:41673-41692 Msa1413390:intron 40.0%
! CCAACTCTGTTTCTCTAACA+TGG - tig0024026:41780-41799 None:intergenic 40.0%
CCATGTTAGAGAAACAGAGT+TGG + tig0024026:41777-41796 Msa1413390:intron 40.0%
CATAGTAGCACACAAAGTAC+AGG - tig0024026:42186-42205 None:intergenic 40.0%
TTTGCAGCACCTTGTTGAAA+TGG + tig0024026:42223-42242 Msa1413390:intron 40.0%
TGTTCTGTACTCCTTAGAGA+GGG + tig0024026:42462-42481 Msa1413390:intron 40.0%
! GTACTTTTAGTCCCTCTCTA+AGG - tig0024026:42476-42495 None:intergenic 40.0%
!! TGAATTGGCCTTATGTTAGC+GGG - tig0024026:42667-42686 None:intergenic 40.0%
AGAAGGAACTGTTGATCCTT+TGG + tig0024026:42687-42706 Msa1413390:CDS 40.0%
CTACAAAGCAGGCTATCAAA+CGG + tig0024026:42734-42753 Msa1413390:CDS 40.0%
CATCCGCATCTTAGACTTAA+AGG - tig0024026:43111-43130 None:intergenic 40.0%
! CTTTAAGTCTAAGATGCGGA+TGG + tig0024026:43109-43128 Msa1413390:CDS 40.0%
GTTAGGATGGTCAAAAATGG+AGG - tig0024026:43349-43368 None:intergenic 40.0%
!! CATTGACTCGTATGTTAGGA+TGG - tig0024026:43362-43381 None:intergenic 40.0%
!! CTGACATTGACTCGTATGTT+AGG - tig0024026:43366-43385 None:intergenic 40.0%
TTCTAGCCTGAATTTACCAC+AGG + tig0024026:43442-43461 Msa1413390:intron 40.0%
TTCTCTCCTGTGGTAAATTC+AGG - tig0024026:43451-43470 None:intergenic 40.0%
! CAACTTACAACCGATTCAAG+GGG - tig0024026:43597-43616 None:intergenic 40.0%
! CCAACTTACAACCGATTCAA+GGG - tig0024026:43598-43617 None:intergenic 40.0%
! TCCAACTTACAACCGATTCA+AGG - tig0024026:43599-43618 None:intergenic 40.0%
! GAATCGGTTGTAAGTTGGAT+AGG + tig0024026:43600-43619 Msa1413390:intron 40.0%
! TAAGTTGGATAGGAATGAGG+AGG + tig0024026:43610-43629 Msa1413390:intron 40.0%
! AACAACTTTTCCAGGGTTGA+TGG - tig0024026:43646-43665 None:intergenic 40.0%
!! CTGTGGTTTTGCTTCAAGAT+TGG + tig0024026:43800-43819 Msa1413390:intron 40.0%
AAATCTCCTGATGATCCTCA+AGG + tig0024026:43857-43876 Msa1413390:CDS 40.0%
AGTAAGTAAACGTGCGTGAG+GGG + tig0024026:40545-40564 Msa1413390:five_prime_UTR 45.0%
AAGAAGATGCAAGGTGGTAG+CGG + tig0024026:40648-40667 Msa1413390:exon 45.0%
TTAGGGTTAGGGTTAGGGTT+AGG + tig0024026:40772-40791 Msa1413390:intron 45.0%
TAGGGTTAGGGTTAGGGTTA+GGG + tig0024026:40773-40792 Msa1413390:intron 45.0%
CTTCAGTCAAAGCAATGACC+TGG - tig0024026:41311-41330 None:intergenic 45.0%
AGTTTATTGTGGGTGGGTGT+TGG - tig0024026:41384-41403 None:intergenic 45.0%
AACACCCACCCACAATAAAC+TGG + tig0024026:41383-41402 Msa1413390:CDS 45.0%
GATGGTCAAAGTGGGTATGA+AGG - tig0024026:41497-41516 None:intergenic 45.0%
!! ATTTGGTGTGTAAGCCTCGA+CGG - tig0024026:41589-41608 None:intergenic 45.0%
AGGACTAGGATTGCATCAAG+TGG - tig0024026:41672-41691 None:intergenic 45.0%
GGAATCACTTTATCCTAGGG+AGG + tig0024026:42133-42152 Msa1413390:intron 45.0%
CATTCTGTTGATGCTGAGTG+AGG - tig0024026:42296-42315 None:intergenic 45.0%
GTGTTCTGTACTCCTTAGAG+AGG + tig0024026:42461-42480 Msa1413390:intron 45.0%
AGGTAGATCCCGCTAACATA+AGG + tig0024026:42656-42675 Msa1413390:intron 45.0%
AGTTGCTGAAGCTACAAAGC+AGG + tig0024026:42723-42742 Msa1413390:CDS 45.0%
CAAACGGAAAATTGCGCAAG+CGG + tig0024026:42750-42769 Msa1413390:CDS 45.0%
!! TTGCTTTTCCCTTGGTTGTC+TGG - tig0024026:43184-43203 None:intergenic 45.0%
GCAATGATACTTCTCTCCTG+TGG - tig0024026:43461-43480 None:intergenic 45.0%
CCCTTGAATCGGTTGTAAGT+TGG + tig0024026:43595-43614 Msa1413390:intron 45.0%
!! AGATTGGTTTCTTCTCGGGA+AGG + tig0024026:43816-43835 Msa1413390:intron 45.0%
TCCTGATGATCCTCAAGGAA+AGG + tig0024026:43862-43881 Msa1413390:CDS 45.0%
ACCTTTCCTTGAGGATCATC+AGG - tig0024026:43866-43885 None:intergenic 45.0%
GATGATCCTCAAGGAAAGGT+TGG + tig0024026:43866-43885 Msa1413390:CDS 45.0%
CATACAATCGAAGGGCTAAC+TGG - tig0024026:43992-44011 None:intergenic 45.0%
GCTCAAACCAATCACTGTAG+AGG + tig0024026:44022-44041 Msa1413390:three_prime_UTR 45.0%
CAAACAGCCTCTACAGTGAT+TGG - tig0024026:44032-44051 None:intergenic 45.0%
AGAAGATGCAAGGTGGTAGC+GGG + tig0024026:40649-40668 Msa1413390:exon 50.0%
!! TCTATCTCATGGCGGACATC+AGG - tig0024026:41127-41146 None:intergenic 50.0%
GTTGGAGATTGGGTGGAAGT+GGG - tig0024026:41366-41385 None:intergenic 50.0%
TGTTGGAGATTGGGTGGAAG+TGG - tig0024026:41367-41386 None:intergenic 50.0%
GTCGAGGCTTACACACCAAA+TGG + tig0024026:41588-41607 Msa1413390:CDS 50.0%
GATGTAATGCAGGGCTCCAT+AGG - tig0024026:41692-41711 None:intergenic 50.0%
TGCACTCATGGCTCATGTCA+TGG - tig0024026:41954-41973 None:intergenic 50.0%
ACTTGGAAGTAAGCCTCCCT+AGG - tig0024026:42149-42168 None:intergenic 50.0%
ACTCGCTCAGCTTCAACCAA+AGG - tig0024026:42706-42725 None:intergenic 50.0%
GGCTCTATACGAAGCTTTGC+AGG - tig0024026:42805-42824 None:intergenic 50.0%
CACAACTCACCACATCCTCA+GGG - tig0024026:42834-42853 None:intergenic 50.0%
ACACAACTCACCACATCCTC+AGG - tig0024026:42835-42854 None:intergenic 50.0%
CAGCAGTTCCAGACAACCAA+GGG + tig0024026:43173-43192 Msa1413390:CDS 50.0%
GTCACACCAACCTTTCCTTG+AGG - tig0024026:43875-43894 None:intergenic 50.0%
!! CAAGGAAAGGTTGGTGTGAC+TGG + tig0024026:43875-43894 Msa1413390:CDS 50.0%
!! AAGGTTGGTGTGACTGGAAG+TGG + tig0024026:43881-43900 Msa1413390:CDS 50.0%
!! AGGTTGGTGTGACTGGAAGT+GGG + tig0024026:43882-43901 Msa1413390:CDS 50.0%
CATGGAAAGAGAGCTCTCCG+AGG + tig0024026:40893-40912 Msa1413390:CDS 55.0%
!! GTGGGTGGGTGTTGGAGATT+GGG - tig0024026:41376-41395 None:intergenic 55.0%
!! TGTGGGTGGGTGTTGGAGAT+TGG - tig0024026:41377-41396 None:intergenic 55.0%
TCCTGTTGGCACCAGAGTTC+AGG + tig0024026:41527-41546 Msa1413390:CDS 55.0%
GTGGTATGATGCAACCGTCG+AGG + tig0024026:41572-41591 Msa1413390:CDS 55.0%
ATGCAGGGCTCCATAGGACT+AGG - tig0024026:41686-41705 None:intergenic 55.0%
TATAGAGCCCGATGACCCTG+AGG + tig0024026:42816-42835 Msa1413390:CDS 55.0%
ACCACATCCTCAGGGTCATC+GGG - tig0024026:42826-42845 None:intergenic 55.0%
CACCACATCCTCAGGGTCAT+CGG - tig0024026:42827-42846 None:intergenic 55.0%
GCAGCAGTTCCAGACAACCA+AGG + tig0024026:43172-43191 Msa1413390:CDS 55.0%
GGTGTGACTGGAAGTGGGAA+AGG + tig0024026:43887-43906 Msa1413390:CDS 55.0%
!! CTCATGGCGGACATCAGGAC+AGG - tig0024026:41122-41141 None:intergenic 60.0%
!! GGTGGGTGTTGGAGATTGGG+TGG - tig0024026:41373-41392 None:intergenic 60.0%
! GCCTGAACTCTGGTGCCAAC+AGG - tig0024026:41531-41550 None:intergenic 60.0%
GCCCGATGACCCTGAGGATG+TGG + tig0024026:42822-42841 Msa1413390:CDS 65.0%
!! GCAAGGTGGTAGCGGGCGTG+AGG + tig0024026:40656-40675 Msa1413390:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024026 gene 40479 44160 40479 ID=Msa1413390;Name=Msa1413390
tig0024026 mRNA 40479 44160 40479 ID=Msa1413390-mRNA-1;Parent=Msa1413390;Name=Msa1413390-mRNA-1;_AED=0.16;_eAED=0.16;_QI=175|1|1|1|1|1|7|181|297
tig0024026 exon 40479 40749 40479 ID=Msa1413390-mRNA-1:exon:21131;Parent=Msa1413390-mRNA-1
tig0024026 exon 40846 40914 40846 ID=Msa1413390-mRNA-1:exon:21132;Parent=Msa1413390-mRNA-1
tig0024026 exon 41312 41404 41312 ID=Msa1413390-mRNA-1:exon:21133;Parent=Msa1413390-mRNA-1
tig0024026 exon 41492 41650 41492 ID=Msa1413390-mRNA-1:exon:21134;Parent=Msa1413390-mRNA-1
tig0024026 exon 42658 42843 42658 ID=Msa1413390-mRNA-1:exon:21135;Parent=Msa1413390-mRNA-1
tig0024026 exon 43080 43208 43080 ID=Msa1413390-mRNA-1:exon:21136;Parent=Msa1413390-mRNA-1
tig0024026 exon 43818 44160 43818 ID=Msa1413390-mRNA-1:exon:21137;Parent=Msa1413390-mRNA-1
tig0024026 five_prime_UTR 40479 40653 40479 ID=Msa1413390-mRNA-1:five_prime_utr;Parent=Msa1413390-mRNA-1
tig0024026 CDS 40654 40749 40654 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 40846 40914 40846 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 41312 41404 41312 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 41492 41650 41492 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 42658 42843 42658 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 43080 43208 43080 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 CDS 43818 43979 43818 ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1
tig0024026 three_prime_UTR 43980 44160 43980 ID=Msa1413390-mRNA-1:three_prime_utr;Parent=Msa1413390-mRNA-1
Gene Sequence

>Msa1413390

ATGCAAGGTGGTAGCGGGCGTGAGGACGAAGAAGAAGAATTAAATATAAATGAACTCGCATCCAATCTTTCTACTTACAAACAACAACTTCATCAGGTTAGAGAACTTCTGAATGATGAACCATCTAATTCTGAGTATGTCGACATGGAAAGAGAGCTCTCCGAGGTCATTGCTTTGACTGAAGAACTTCTTGCCACTGCTAAGCAAAATGAAATACCCACTTCCACCCAATCTCCAACACCCACCCACAATAAACTGGACCTTCATACCCACTTTGACCATCAACACAAATTTCCTGTTGGCACCAGAGTTCAGGCTGTTTATAGTGATGATGGGGAGTGGTATGATGCAACCGTCGAGGCTTACACACCAAATGGTTATTATGTCAGCTATGACACTTGGGGTAATAAAGAAGAGGTAGATCCCGCTAACATAAGGCCAATTCAAGAAGGAACTGTTGATCCTTTGGTTGAAGCTGAGCGAGTTGCTGAAGCTACAAAGCAGGCTATCAAACGGAAAATTGCGCAAGCGGCATCTGTTGATTTTCAGTCACGGAGTCTACCTGCAAAGCTTCGTATAGAGCCCGATGACCCTGAGGATGTGAAAGTTACCAAACGTAAGAAAATACATGCCTTTAAGTCTAAGATGCGGATGGAACAACTTGAAGTCACCCAAAATAAGCGGCAAAATGCTTGGCAGCAGTTCCAGACAACCAAGGGAAAAGCAAAAAAGATTGGTTTCTTCTCGGGAAGGAAGCGTGAGAGTATTTTTAAATCTCCTGATGATCCTCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAGAAGAGAAAAGCATTTTCATCTGAAGGATGGTACAATCGAGAATGATGATTAG

Protein sequence

>Msa1413390

MQGGSGREDEEEELNINELASNLSTYKQQLHQVRELLNDEPSNSEYVDMERELSEVIALTEELLATAKQNEIPTSTQSPTPTHNKLDLHTHFDHQHKFPVGTRVQAVYSDDGEWYDATVEAYTPNGYYVSYDTWGNKEEVDPANIRPIQEGTVDPLVEAERVAEATKQAIKRKIAQAASVDFQSRSLPAKLRIEPDDPEDVKVTKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQTTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQRREKHFHLKDGTIENDD*