Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1413390 | sp|Q6DEY1|SPF30_XENTR | 25.795 | 283 | 139 | 8 | 18 | 285 | 4 | 230 | 5.39e-16 | 79.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1413390 | A0A072USW8 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 581 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0692750 | Msa1413390 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1413390 | MtrunA17_Chr4g0076891 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 581 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1413390 | AT2G02570.1 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 2.24e-143 | 405 |
Msa1413390 | AT2G02570.4 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 2.24e-143 | 405 |
Msa1413390 | AT2G02570.2 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 2.24e-143 | 405 |
Msa1413390 | AT2G02570.3 | 63.300 | 297 | 83 | 4 | 12 | 297 | 6 | 287 | 1.52e-132 | 378 |
Find 89 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCCGCATCTTAGACTTAA+AGG | 0.209233 | tig0024026:-43108 | None:intergenic |
TGTGGGTGGGTGTTGGAGAT+TGG | 0.224072 | tig0024026:-41374 | None:intergenic |
GTGGGTGGGTGTTGGAGATT+GGG | 0.293108 | tig0024026:-41373 | None:intergenic |
GGCTCTATACGAAGCTTTGC+AGG | 0.323302 | tig0024026:-42802 | None:intergenic |
TCCTGTTGGCACCAGAGTTC+AGG | 0.328664 | tig0024026:+41527 | Msa1413390:CDS |
TCAACAGTTCCTTCTTGAAT+TGG | 0.334241 | tig0024026:-42679 | None:intergenic |
CTTCAAGATTGGTTTCTTCT+CGG | 0.338340 | tig0024026:+43811 | Msa1413390:intron |
AGAAGGAACTGTTGATCCTT+TGG | 0.344531 | tig0024026:+42687 | Msa1413390:CDS |
AAGTGTTGCACATACATAAA+AGG | 0.361047 | tig0024026:-44121 | None:intergenic |
TGTTGGAGATTGGGTGGAAG+TGG | 0.361676 | tig0024026:-41364 | None:intergenic |
CAAGGAAAGGTTGGTGTGAC+TGG | 0.362128 | tig0024026:+43875 | Msa1413390:CDS |
TTACAAACAACAACTTCATC+AGG | 0.389377 | tig0024026:+40728 | Msa1413390:CDS |
CATACAATCGAAGGGCTAAC+TGG | 0.395003 | tig0024026:-43989 | None:intergenic |
CAAACAGCCTCTACAGTGAT+TGG | 0.395110 | tig0024026:-44029 | None:intergenic |
CAACAGGAAATTTGTGTTGA+TGG | 0.395602 | tig0024026:-41512 | None:intergenic |
ACCTTTCCTTGAGGATCATC+AGG | 0.403855 | tig0024026:-43863 | None:intergenic |
AACACCCACCCACAATAAAC+TGG | 0.407152 | tig0024026:+41383 | Msa1413390:CDS |
AAGGTTGGTGTGACTGGAAG+TGG | 0.416029 | tig0024026:+43881 | Msa1413390:CDS |
TTGAATTGGCCTTATGTTAG+CGG | 0.420910 | tig0024026:-42665 | None:intergenic |
CAGGCTGTTTATAGTGATGA+TGG | 0.431282 | tig0024026:+41546 | Msa1413390:CDS |
GCCTGAACTCTGGTGCCAAC+AGG | 0.438372 | tig0024026:-41528 | None:intergenic |
TTCAAGATTGGTTTCTTCTC+GGG | 0.438391 | tig0024026:+43812 | Msa1413390:intron |
ATGTATGTGCAACACTTACA+TGG | 0.439586 | tig0024026:+44127 | Msa1413390:three_prime_UTR |
AGTTTATTGTGGGTGGGTGT+TGG | 0.447717 | tig0024026:-41381 | None:intergenic |
ACACAACTCACCACATCCTC+AGG | 0.452174 | tig0024026:-42832 | None:intergenic |
ACCACATCCTCAGGGTCATC+GGG | 0.452351 | tig0024026:-42823 | None:intergenic |
GTTGGAGATTGGGTGGAAGT+GGG | 0.456301 | tig0024026:-41363 | None:intergenic |
AAGAAGATGCAAGGTGGTAG+CGG | 0.461653 | tig0024026:+40648 | Msa1413390:exon |
TTGTTTGTAAGTAGAAAGAT+TGG | 0.462862 | tig0024026:-40715 | None:intergenic |
TACAATCGAGAATGATGATT+AGG | 0.470705 | tig0024026:+43958 | Msa1413390:CDS |
TAGCTGACATAATAACCATT+TGG | 0.474920 | tig0024026:-41603 | None:intergenic |
CACCACATCCTCAGGGTCAT+CGG | 0.475099 | tig0024026:-42824 | None:intergenic |
GGTGTGACTGGAAGTGGGAA+AGG | 0.475251 | tig0024026:+43887 | Msa1413390:CDS |
AGGTAGATCCCGCTAACATA+AGG | 0.476232 | tig0024026:+42656 | Msa1413390:intron |
TCGACATACTCAGAATTAGA+TGG | 0.482981 | tig0024026:-40870 | None:intergenic |
TGAATTGGCCTTATGTTAGC+GGG | 0.489549 | tig0024026:-42664 | None:intergenic |
ATTATGTCAGCTATGACACT+TGG | 0.510217 | tig0024026:+41613 | Msa1413390:CDS |
GTCGAGGCTTACACACCAAA+TGG | 0.519193 | tig0024026:+41588 | Msa1413390:CDS |
AAAATAAGCGGCAAAATGCT+TGG | 0.521225 | tig0024026:+43150 | Msa1413390:CDS |
AGGCTGTTTATAGTGATGAT+GGG | 0.524754 | tig0024026:+41547 | Msa1413390:CDS |
CGTACATACCAGTTTATTGT+GGG | 0.530390 | tig0024026:-41391 | None:intergenic |
AGAAGATGCAAGGTGGTAGC+GGG | 0.534654 | tig0024026:+40649 | Msa1413390:exon |
TTATGTCAGCTATGACACTT+GGG | 0.535353 | tig0024026:+41614 | Msa1413390:CDS |
ACATACCAGTTTATTGTGGG+TGG | 0.536199 | tig0024026:-41388 | None:intergenic |
AGTTGCTGAAGCTACAAAGC+AGG | 0.562918 | tig0024026:+42723 | Msa1413390:CDS |
TCCTGATGATCCTCAAGGAA+AGG | 0.563297 | tig0024026:+43862 | Msa1413390:CDS |
CTACAAAGCAGGCTATCAAA+CGG | 0.564191 | tig0024026:+42734 | Msa1413390:CDS |
GGTGGGTGTTGGAGATTGGG+TGG | 0.565121 | tig0024026:-41370 | None:intergenic |
ACGTACATACCAGTTTATTG+TGG | 0.565424 | tig0024026:-41392 | None:intergenic |
ACTATAAACAGCCTGAACTC+TGG | 0.565916 | tig0024026:-41538 | None:intergenic |
ATAAAGAGAAAGAAGATGCA+AGG | 0.565982 | tig0024026:+40639 | Msa1413390:exon |
AAATCTCCTGATGATCCTCA+AGG | 0.567592 | tig0024026:+43857 | Msa1413390:CDS |
GCAAGGTGGTAGCGGGCGTG+AGG | 0.569536 | tig0024026:+40656 | Msa1413390:CDS |
CAAACGGAAAATTGCGCAAG+CGG | 0.570501 | tig0024026:+42750 | Msa1413390:CDS |
CATCAACACAAATTTCCTGT+TGG | 0.571494 | tig0024026:+41513 | Msa1413390:CDS |
GATGATCCTCAAGGAAAGGT+TGG | 0.575071 | tig0024026:+43866 | Msa1413390:CDS |
GCCCGATGACCCTGAGGATG+TGG | 0.576654 | tig0024026:+42822 | Msa1413390:CDS |
ATTTGTGTTGATGGTCAAAG+TGG | 0.580757 | tig0024026:-41503 | None:intergenic |
AACATAAGGCCAATTCAAGA+AGG | 0.580826 | tig0024026:+42670 | Msa1413390:CDS |
ATTTGGTGTGTAAGCCTCGA+CGG | 0.580845 | tig0024026:-41586 | None:intergenic |
TTTATAGTGATGATGGGGAG+TGG | 0.581469 | tig0024026:+41553 | Msa1413390:CDS |
GGCTGTTTATAGTGATGATG+GGG | 0.588465 | tig0024026:+41548 | Msa1413390:CDS |
AGGTTGGTGTGACTGGAAGT+GGG | 0.590449 | tig0024026:+43882 | Msa1413390:CDS |
CATACCAGTTTATTGTGGGT+GGG | 0.590879 | tig0024026:-41387 | None:intergenic |
CAGCAGTTCCAGACAACCAA+GGG | 0.593266 | tig0024026:+43173 | Msa1413390:CDS |
GATGGTCAAAGTGGGTATGA+AGG | 0.597115 | tig0024026:-41494 | None:intergenic |
ACTCGCTCAGCTTCAACCAA+AGG | 0.606860 | tig0024026:-42703 | None:intergenic |
AGATTGGTTTCTTCTCGGGA+AGG | 0.610846 | tig0024026:+43816 | Msa1413390:intron |
AGTAAGTAAACGTGCGTGAG+GGG | 0.615771 | tig0024026:+40545 | Msa1413390:five_prime_UTR |
AAGTAAGTAAACGTGCGTGA+GGG | 0.616814 | tig0024026:+40544 | Msa1413390:five_prime_UTR |
AGGTGTGGTGCAGAAAGGAG+TGG | 0.625574 | tig0024026:+40466 | None:intergenic |
AAGAGAAAGAAGATGCAAGG+TGG | 0.627035 | tig0024026:+40642 | Msa1413390:exon |
TAAGTAAGTAAACGTGCGTG+AGG | 0.627141 | tig0024026:+40543 | Msa1413390:five_prime_UTR |
TTTGTGTTGATGGTCAAAGT+GGG | 0.628380 | tig0024026:-41502 | None:intergenic |
CACTTGGGGTAATAAAGAAG+AGG | 0.630391 | tig0024026:+41629 | Msa1413390:CDS |
TTGAAGTCACCCAAAATAAG+CGG | 0.630424 | tig0024026:+43138 | Msa1413390:CDS |
GCAGCAGTTCCAGACAACCA+AGG | 0.644897 | tig0024026:+43172 | Msa1413390:CDS |
TGTTACATACATACAATCGA+AGG | 0.646002 | tig0024026:-43998 | None:intergenic |
GCTCAAACCAATCACTGTAG+AGG | 0.646028 | tig0024026:+44022 | Msa1413390:three_prime_UTR |
CACAACTCACCACATCCTCA+GGG | 0.646183 | tig0024026:-42831 | None:intergenic |
TAATTCTGAGTATGTCGACA+TGG | 0.651465 | tig0024026:+40875 | Msa1413390:CDS |
CTTTAAGTCTAAGATGCGGA+TGG | 0.652129 | tig0024026:+43109 | Msa1413390:CDS |
GTTACATACATACAATCGAA+GGG | 0.653029 | tig0024026:-43997 | None:intergenic |
GTCACACCAACCTTTCCTTG+AGG | 0.671537 | tig0024026:-43872 | None:intergenic |
GTGGTATGATGCAACCGTCG+AGG | 0.674698 | tig0024026:+41572 | Msa1413390:CDS |
TATGTCAGCTATGACACTTG+GGG | 0.685361 | tig0024026:+41615 | Msa1413390:CDS |
ATGCCTTTAAGTCTAAGATG+CGG | 0.694744 | tig0024026:+43105 | Msa1413390:CDS |
TATAGAGCCCGATGACCCTG+AGG | 0.709309 | tig0024026:+42816 | Msa1413390:CDS |
CATGGAAAGAGAGCTCTCCG+AGG | 0.756940 | tig0024026:+40893 | Msa1413390:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTTGTTAATTAAAAAT+GGG | - | tig0024026:41032-41051 | None:intergenic | 10.0% |
!!! | AATAAAAATGAATATTTTGT+AGG | + | tig0024026:42541-42560 | Msa1413390:intron | 10.0% |
!!! | ATAAAAATGAATATTTTGTA+GGG | + | tig0024026:42542-42561 | Msa1413390:intron | 10.0% |
!! | TTTATTGAAAAAAGAATATA+AGG | + | tig0024026:43669-43688 | Msa1413390:intron | 10.0% |
!!! | TTTCTTTGTTTGTTTTTTTA+GGG | + | tig0024026:40755-40774 | Msa1413390:intron | 15.0% |
!!! | GTTGTTATTATTAATTGAAT+GGG | - | tig0024026:41010-41029 | None:intergenic | 15.0% |
!!! | GTTTTCTTGTTAATTAAAAA+TGG | - | tig0024026:41033-41052 | None:intergenic | 15.0% |
!! | AAATAGATAAATAATGTTGT+TGG | - | tig0024026:41189-41208 | None:intergenic | 15.0% |
!!! | AAACTCATTATAAAATTTTC+TGG | + | tig0024026:41999-42018 | Msa1413390:intron | 15.0% |
!!! | AACAATAAAAAGTATTTTAC+TGG | + | tig0024026:42250-42269 | Msa1413390:intron | 15.0% |
!!! | TGGAGTATTTTTTTTTTATA+GGG | - | tig0024026:42583-42602 | None:intergenic | 15.0% |
!!! | CTATTTTAAGATTATTGTTT+TGG | + | tig0024026:44097-44116 | Msa1413390:three_prime_UTR | 15.0% |
!!! | GTTTCTTTGTTTGTTTTTTT+AGG | + | tig0024026:40754-40773 | Msa1413390:intron | 20.0% |
!!! | GGTTGTTATTATTAATTGAA+TGG | - | tig0024026:41011-41030 | None:intergenic | 20.0% |
!! | TAATTAATATTAGTGAGAGT+TGG | - | tig0024026:41238-41257 | None:intergenic | 20.0% |
!! | TAATGCAATGGTAAATAAAT+TGG | - | tig0024026:41730-41749 | None:intergenic | 20.0% |
!! | AACATGGAAAGAAAAAAAAA+AGG | - | tig0024026:41764-41783 | None:intergenic | 20.0% |
!! | TATAATGCTGAAGAAAAAAA+CGG | - | tig0024026:41928-41947 | None:intergenic | 20.0% |
!!! | ATTAATGTTTGCTATTGAAA+GGG | + | tig0024026:42336-42355 | Msa1413390:intron | 20.0% |
!! | AGAACACTTGTTTATATAAA+AGG | - | tig0024026:42448-42467 | None:intergenic | 20.0% |
!!! | TACCTGTTTTTATAAAATGT+AGG | + | tig0024026:42493-42512 | Msa1413390:intron | 20.0% |
!!! | ACCTGTTTTTATAAAATGTA+GGG | + | tig0024026:42494-42513 | Msa1413390:intron | 20.0% |
!!! | CTGGAGTATTTTTTTTTTAT+AGG | - | tig0024026:42584-42603 | None:intergenic | 20.0% |
!! | ATAAAAAAAAAATACTCCAG+TGG | + | tig0024026:42584-42603 | Msa1413390:intron | 20.0% |
!!! | GTCTTAATAAATATTTTCCT+TGG | + | tig0024026:42900-42919 | Msa1413390:intron | 20.0% |
!!! | AGCTAAAAAATATTTTCACA+TGG | - | tig0024026:43554-43573 | None:intergenic | 20.0% |
!! | ATATAAAACACAAATATCAG+TGG | - | tig0024026:43719-43738 | None:intergenic | 20.0% |
! | TTGTTTGTAAGTAGAAAGAT+TGG | - | tig0024026:40718-40737 | None:intergenic | 25.0% |
!!! | TTGTTTGTTTTTTTAGGGTT+AGG | + | tig0024026:40760-40779 | Msa1413390:intron | 25.0% |
!!! | TGTTTGTTTTTTTAGGGTTA+GGG | + | tig0024026:40761-40780 | Msa1413390:intron | 25.0% |
! | ATGAAAGAAAAGAAAAACCT+CGG | - | tig0024026:40913-40932 | None:intergenic | 25.0% |
! | GCTTCAAATTGAAATTGAAA+AGG | + | tig0024026:40967-40986 | Msa1413390:intron | 25.0% |
! | TGATGAGTAATGAATAGATT+CGG | - | tig0024026:41443-41462 | None:intergenic | 25.0% |
!!! | CTATGTTTTTCACTGTTTTT+AGG | + | tig0024026:41470-41489 | Msa1413390:intron | 25.0% |
! | TTCTCAACTAAACAAAAAAC+TGG | - | tig0024026:42103-42122 | None:intergenic | 25.0% |
! | TTAGTTGAGAAAAGAAATAG+AGG | + | tig0024026:42112-42131 | Msa1413390:intron | 25.0% |
!!! | CATTAATGTTTGCTATTGAA+AGG | + | tig0024026:42335-42354 | Msa1413390:intron | 25.0% |
! | GACAGATTCATAATTCTATA+GGG | - | tig0024026:42379-42398 | None:intergenic | 25.0% |
! | AGACAGATTCATAATTCTAT+AGG | - | tig0024026:42380-42399 | None:intergenic | 25.0% |
!!! | TCGTCCCTATATATATTTTT+TGG | + | tig0024026:42404-42423 | Msa1413390:intron | 25.0% |
! | GGGTCCAAAAAATATATATA+GGG | - | tig0024026:42411-42430 | None:intergenic | 25.0% |
! | AGGGTCCAAAAAATATATAT+AGG | - | tig0024026:42412-42431 | None:intergenic | 25.0% |
! | AAAAGGTAGGAAACTAAAAA+GGG | - | tig0024026:42431-42450 | None:intergenic | 25.0% |
! | TAAAAGGTAGGAAACTAAAA+AGG | - | tig0024026:42432-42451 | None:intergenic | 25.0% |
! | CACTTGTTTATATAAAAGGT+AGG | - | tig0024026:42444-42463 | None:intergenic | 25.0% |
!!! | CCTGTTTTTATAAAATGTAG+GGG | + | tig0024026:42495-42514 | Msa1413390:intron | 25.0% |
!! | TTTTCTGCAAATGTATTTCT+TGG | + | tig0024026:42966-42985 | Msa1413390:intron | 25.0% |
! | AATAGTAGAGAAATTGAGAA+AGG | - | tig0024026:43215-43234 | None:intergenic | 25.0% |
! | TATGTCTTAAAGTGACTAAT+GGG | + | tig0024026:43311-43330 | Msa1413390:intron | 25.0% |
!! | TAAATTCAACAACTTTTCCA+GGG | - | tig0024026:43653-43672 | None:intergenic | 25.0% |
!! | ATAAATTCAACAACTTTTCC+AGG | - | tig0024026:43654-43673 | None:intergenic | 25.0% |
!! | ATTGTGAAAATTCTAGAGAT+CGG | - | tig0024026:43696-43715 | None:intergenic | 25.0% |
ATAAAGAGAAAGAAGATGCA+AGG | + | tig0024026:40639-40658 | Msa1413390:exon | 30.0% | |
TTACAAACAACAACTTCATC+AGG | + | tig0024026:40728-40747 | Msa1413390:CDS | 30.0% | |
!!! | TTTTTTTAGGGTTAGGGTTA+GGG | + | tig0024026:40767-40786 | Msa1413390:intron | 30.0% |
TGTTGTATGTATCTATCTCA+TGG | - | tig0024026:41138-41157 | None:intergenic | 30.0% | |
ATTTAAGGAGACATTGGAAT+TGG | - | tig0024026:41279-41298 | None:intergenic | 30.0% | |
TGTAGAATTTAAGGAGACAT+TGG | - | tig0024026:41285-41304 | None:intergenic | 30.0% | |
! | TATTTCATTTTGCTTAGCAG+TGG | - | tig0024026:41343-41362 | None:intergenic | 30.0% |
TAGCTGACATAATAACCATT+TGG | - | tig0024026:41606-41625 | None:intergenic | 30.0% | |
TGCAATGGTAAATAAATTGG+AGG | - | tig0024026:41727-41746 | None:intergenic | 30.0% | |
! | AAGTTCTATGTGATTTTTGC+TGG | + | tig0024026:41817-41836 | Msa1413390:intron | 30.0% |
! | ATAAGTTGGAAATGCAATTG+TGG | - | tig0024026:41879-41898 | None:intergenic | 30.0% |
ACAATACAGATGCAATAAGT+TGG | - | tig0024026:41893-41912 | None:intergenic | 30.0% | |
TGAGTATCAAATCATGTAAC+AGG | + | tig0024026:42032-42051 | Msa1413390:intron | 30.0% | |
TTGTTCTTTCCATTTCAACA+AGG | - | tig0024026:42235-42254 | None:intergenic | 30.0% | |
! | CCCCTACATTTTATAAAAAC+AGG | - | tig0024026:42498-42517 | None:intergenic | 30.0% |
AGGGGCTAAAAATTGTTTAT+AGG | + | tig0024026:42513-42532 | Msa1413390:intron | 30.0% | |
AAAATCAGTAACTAAACCAC+TGG | - | tig0024026:42603-42622 | None:intergenic | 30.0% | |
!!! | GGTTTAGTTACTGATTTTCA+AGG | + | tig0024026:42605-42624 | Msa1413390:intron | 30.0% |
! | ATATGTTGCTTGCTTATTAC+AGG | + | tig0024026:42636-42655 | Msa1413390:intron | 30.0% |
AGAAAACTGGCAGATAAATT+TGG | - | tig0024026:43021-43040 | None:intergenic | 30.0% | |
! | AATTTATCTGCCAGTTTTCT+AGG | + | tig0024026:43021-43040 | Msa1413390:intron | 30.0% |
! | GTTAGCAAACATGTCATTTA+GGG | - | tig0024026:43050-43069 | None:intergenic | 30.0% |
! | AGTTAGCAAACATGTCATTT+AGG | - | tig0024026:43051-43070 | None:intergenic | 30.0% |
TAGTTTCTATGCAAGAATGT+AGG | + | tig0024026:43277-43296 | Msa1413390:intron | 30.0% | |
GTATGTCTTAAAGTGACTAA+TGG | + | tig0024026:43310-43329 | Msa1413390:intron | 30.0% | |
TATGTTAGGATGGTCAAAAA+TGG | - | tig0024026:43352-43371 | None:intergenic | 30.0% | |
TATCATTGCAGTCATTAAGT+TGG | + | tig0024026:43472-43491 | Msa1413390:intron | 30.0% | |
AATCTATTTACCCCTTGAAT+CGG | + | tig0024026:43584-43603 | Msa1413390:intron | 30.0% | |
! | TTGTGAAAATTCTAGAGATC+GGG | - | tig0024026:43695-43714 | None:intergenic | 30.0% |
!!! | AGAAAAGCATTTTCATCTGA+AGG | + | tig0024026:43931-43950 | Msa1413390:CDS | 30.0% |
TACAATCGAGAATGATGATT+AGG | + | tig0024026:43958-43977 | Msa1413390:CDS | 30.0% | |
GTTACATACATACAATCGAA+GGG | - | tig0024026:44000-44019 | None:intergenic | 30.0% | |
TGTTACATACATACAATCGA+AGG | - | tig0024026:44001-44020 | None:intergenic | 30.0% | |
! | AAGTGTTGCACATACATAAA+AGG | - | tig0024026:44124-44143 | None:intergenic | 30.0% |
!!! | GTTTTTTTAGGGTTAGGGTT+AGG | + | tig0024026:40766-40785 | Msa1413390:intron | 35.0% |
! | TTTGATTCCCTTCTCTTTTC+AGG | + | tig0024026:40824-40843 | Msa1413390:intron | 35.0% |
TCTCTAACCTGAAAAGAGAA+GGG | - | tig0024026:40834-40853 | None:intergenic | 35.0% | |
TTCTCTAACCTGAAAAGAGA+AGG | - | tig0024026:40835-40854 | None:intergenic | 35.0% | |
TCGACATACTCAGAATTAGA+TGG | - | tig0024026:40873-40892 | None:intergenic | 35.0% | |
TAATTCTGAGTATGTCGACA+TGG | + | tig0024026:40875-40894 | Msa1413390:CDS | 35.0% | |
GCAAGATAGATAGAAGTGAT+GGG | - | tig0024026:41087-41106 | None:intergenic | 35.0% | |
AGCAAGATAGATAGAAGTGA+TGG | - | tig0024026:41088-41107 | None:intergenic | 35.0% | |
TGTATGTATCTATCTCATGG+CGG | - | tig0024026:41135-41154 | None:intergenic | 35.0% | |
TCCTTAAATTCTACAACACC+AGG | + | tig0024026:41290-41309 | Msa1413390:intron | 35.0% | |
!! | ACCTGGTGTTGTAGAATTTA+AGG | - | tig0024026:41294-41313 | None:intergenic | 35.0% |
CGTACATACCAGTTTATTGT+GGG | - | tig0024026:41394-41413 | None:intergenic | 35.0% | |
ACGTACATACCAGTTTATTG+TGG | - | tig0024026:41395-41414 | None:intergenic | 35.0% | |
!! | TTTGTGTTGATGGTCAAAGT+GGG | - | tig0024026:41505-41524 | None:intergenic | 35.0% |
!! | ATTTGTGTTGATGGTCAAAG+TGG | - | tig0024026:41506-41525 | None:intergenic | 35.0% |
CAACAGGAAATTTGTGTTGA+TGG | - | tig0024026:41515-41534 | None:intergenic | 35.0% | |
CATCAACACAAATTTCCTGT+TGG | + | tig0024026:41513-41532 | Msa1413390:CDS | 35.0% | |
AGGCTGTTTATAGTGATGAT+GGG | + | tig0024026:41547-41566 | Msa1413390:CDS | 35.0% | |
ATTATGTCAGCTATGACACT+TGG | + | tig0024026:41613-41632 | Msa1413390:CDS | 35.0% | |
TTATGTCAGCTATGACACTT+GGG | + | tig0024026:41614-41633 | Msa1413390:CDS | 35.0% | |
ATGTATGCAGATGTAATGCA+GGG | - | tig0024026:41701-41720 | None:intergenic | 35.0% | |
AATGTATGCAGATGTAATGC+AGG | - | tig0024026:41702-41721 | None:intergenic | 35.0% | |
GTACGACATAGATAATGCAA+TGG | - | tig0024026:41742-41761 | None:intergenic | 35.0% | |
CCAAATATATCATGCACTCA+TGG | - | tig0024026:41966-41985 | None:intergenic | 35.0% | |
CCATGAGTGCATGATATATT+TGG | + | tig0024026:41963-41982 | Msa1413390:intron | 35.0% | |
AACGCTTCAATAAACGTGAT+GGG | - | tig0024026:42078-42097 | None:intergenic | 35.0% | |
AAACGCTTCAATAAACGTGA+TGG | - | tig0024026:42079-42098 | None:intergenic | 35.0% | |
TAGAGGAATCACTTTATCCT+AGG | + | tig0024026:42129-42148 | Msa1413390:intron | 35.0% | |
AGAGGAATCACTTTATCCTA+GGG | + | tig0024026:42130-42149 | Msa1413390:intron | 35.0% | |
AGGAATGAGATTTCTCAACT+TGG | - | tig0024026:42166-42185 | None:intergenic | 35.0% | |
!! | TTGAATTGGCCTTATGTTAG+CGG | - | tig0024026:42668-42687 | None:intergenic | 35.0% |
AACATAAGGCCAATTCAAGA+AGG | + | tig0024026:42670-42689 | Msa1413390:CDS | 35.0% | |
TCAACAGTTCCTTCTTGAAT+TGG | - | tig0024026:42682-42701 | None:intergenic | 35.0% | |
!!! | CATCTGTTGATTTTCAGTCA+CGG | + | tig0024026:42773-42792 | Msa1413390:CDS | 35.0% |
TAGAACAAGAGATCAAACCA+AGG | - | tig0024026:42920-42939 | None:intergenic | 35.0% | |
GCAAATGTATTTCTTGGTAG+TGG | + | tig0024026:42972-42991 | Msa1413390:intron | 35.0% | |
TTTAGGGAATCCTAGAAAAC+TGG | - | tig0024026:43034-43053 | None:intergenic | 35.0% | |
! | GGCATGTATTTTCTTACGTT+TGG | - | tig0024026:43090-43109 | None:intergenic | 35.0% |
! | ATGCCTTTAAGTCTAAGATG+CGG | + | tig0024026:43105-43124 | Msa1413390:CDS | 35.0% |
TTGAAGTCACCCAAAATAAG+CGG | + | tig0024026:43138-43157 | Msa1413390:CDS | 35.0% | |
!! | AGCATTTTGCCGCTTATTTT+GGG | - | tig0024026:43150-43169 | None:intergenic | 35.0% |
!! | AAGCATTTTGCCGCTTATTT+TGG | - | tig0024026:43151-43170 | None:intergenic | 35.0% |
AAAATAAGCGGCAAAATGCT+TGG | + | tig0024026:43150-43169 | Msa1413390:CDS | 35.0% | |
AACCAAGGGAAAAGCAAAAA+AGG | + | tig0024026:43187-43206 | Msa1413390:CDS | 35.0% | |
!!! | TACCTTTTTTGCTTTTCCCT+TGG | - | tig0024026:43192-43211 | None:intergenic | 35.0% |
! | TTGTAAGTTGGATAGGAATG+AGG | + | tig0024026:43607-43626 | Msa1413390:intron | 35.0% |
AAAAGTAATACCATCAACCC+TGG | + | tig0024026:43633-43652 | Msa1413390:intron | 35.0% | |
! | CTTTTGTGATGTATTCACTG+TGG | + | tig0024026:43783-43802 | Msa1413390:intron | 35.0% |
!! | CTTCAAGATTGGTTTCTTCT+CGG | + | tig0024026:43811-43830 | Msa1413390:intron | 35.0% |
!! | TTCAAGATTGGTTTCTTCTC+GGG | + | tig0024026:43812-43831 | Msa1413390:intron | 35.0% |
! | GAAAATGCTTTTCTCTTCTC+TGG | - | tig0024026:43925-43944 | None:intergenic | 35.0% |
! | AAGCATTTTCATCTGAAGGA+TGG | + | tig0024026:43935-43954 | Msa1413390:CDS | 35.0% |
!! | ATAGCATGCATTGTTTTGTC+TGG | - | tig0024026:44058-44077 | None:intergenic | 35.0% |
ATGTATGTGCAACACTTACA+TGG | + | tig0024026:44127-44146 | Msa1413390:three_prime_UTR | 35.0% | |
TAAGTAAGTAAACGTGCGTG+AGG | + | tig0024026:40543-40562 | Msa1413390:five_prime_UTR | 40.0% | |
AAGTAAGTAAACGTGCGTGA+GGG | + | tig0024026:40544-40563 | Msa1413390:five_prime_UTR | 40.0% | |
AAGAGAAAGAAGATGCAAGG+TGG | + | tig0024026:40642-40661 | Msa1413390:exon | 40.0% | |
TATCTATCTTGCTTCTGTGC+AGG | + | tig0024026:41095-41114 | Msa1413390:intron | 40.0% | |
CATACCAGTTTATTGTGGGT+GGG | - | tig0024026:41390-41409 | None:intergenic | 40.0% | |
ACATACCAGTTTATTGTGGG+TGG | - | tig0024026:41391-41410 | None:intergenic | 40.0% | |
ACTATAAACAGCCTGAACTC+TGG | - | tig0024026:41541-41560 | None:intergenic | 40.0% | |
CAGGCTGTTTATAGTGATGA+TGG | + | tig0024026:41546-41565 | Msa1413390:CDS | 40.0% | |
! | GGCTGTTTATAGTGATGATG+GGG | + | tig0024026:41548-41567 | Msa1413390:CDS | 40.0% |
!! | TTTATAGTGATGATGGGGAG+TGG | + | tig0024026:41553-41572 | Msa1413390:CDS | 40.0% |
TATGTCAGCTATGACACTTG+GGG | + | tig0024026:41615-41634 | Msa1413390:CDS | 40.0% | |
CACTTGGGGTAATAAAGAAG+AGG | + | tig0024026:41629-41648 | Msa1413390:CDS | 40.0% | |
TTGATGCAATCCTAGTCCTA+TGG | + | tig0024026:41673-41692 | Msa1413390:intron | 40.0% | |
! | CCAACTCTGTTTCTCTAACA+TGG | - | tig0024026:41780-41799 | None:intergenic | 40.0% |
CCATGTTAGAGAAACAGAGT+TGG | + | tig0024026:41777-41796 | Msa1413390:intron | 40.0% | |
CATAGTAGCACACAAAGTAC+AGG | - | tig0024026:42186-42205 | None:intergenic | 40.0% | |
TTTGCAGCACCTTGTTGAAA+TGG | + | tig0024026:42223-42242 | Msa1413390:intron | 40.0% | |
TGTTCTGTACTCCTTAGAGA+GGG | + | tig0024026:42462-42481 | Msa1413390:intron | 40.0% | |
! | GTACTTTTAGTCCCTCTCTA+AGG | - | tig0024026:42476-42495 | None:intergenic | 40.0% |
!! | TGAATTGGCCTTATGTTAGC+GGG | - | tig0024026:42667-42686 | None:intergenic | 40.0% |
AGAAGGAACTGTTGATCCTT+TGG | + | tig0024026:42687-42706 | Msa1413390:CDS | 40.0% | |
CTACAAAGCAGGCTATCAAA+CGG | + | tig0024026:42734-42753 | Msa1413390:CDS | 40.0% | |
CATCCGCATCTTAGACTTAA+AGG | - | tig0024026:43111-43130 | None:intergenic | 40.0% | |
! | CTTTAAGTCTAAGATGCGGA+TGG | + | tig0024026:43109-43128 | Msa1413390:CDS | 40.0% |
GTTAGGATGGTCAAAAATGG+AGG | - | tig0024026:43349-43368 | None:intergenic | 40.0% | |
!! | CATTGACTCGTATGTTAGGA+TGG | - | tig0024026:43362-43381 | None:intergenic | 40.0% |
!! | CTGACATTGACTCGTATGTT+AGG | - | tig0024026:43366-43385 | None:intergenic | 40.0% |
TTCTAGCCTGAATTTACCAC+AGG | + | tig0024026:43442-43461 | Msa1413390:intron | 40.0% | |
TTCTCTCCTGTGGTAAATTC+AGG | - | tig0024026:43451-43470 | None:intergenic | 40.0% | |
! | CAACTTACAACCGATTCAAG+GGG | - | tig0024026:43597-43616 | None:intergenic | 40.0% |
! | CCAACTTACAACCGATTCAA+GGG | - | tig0024026:43598-43617 | None:intergenic | 40.0% |
! | TCCAACTTACAACCGATTCA+AGG | - | tig0024026:43599-43618 | None:intergenic | 40.0% |
! | GAATCGGTTGTAAGTTGGAT+AGG | + | tig0024026:43600-43619 | Msa1413390:intron | 40.0% |
! | TAAGTTGGATAGGAATGAGG+AGG | + | tig0024026:43610-43629 | Msa1413390:intron | 40.0% |
! | AACAACTTTTCCAGGGTTGA+TGG | - | tig0024026:43646-43665 | None:intergenic | 40.0% |
!! | CTGTGGTTTTGCTTCAAGAT+TGG | + | tig0024026:43800-43819 | Msa1413390:intron | 40.0% |
AAATCTCCTGATGATCCTCA+AGG | + | tig0024026:43857-43876 | Msa1413390:CDS | 40.0% | |
AGTAAGTAAACGTGCGTGAG+GGG | + | tig0024026:40545-40564 | Msa1413390:five_prime_UTR | 45.0% | |
AAGAAGATGCAAGGTGGTAG+CGG | + | tig0024026:40648-40667 | Msa1413390:exon | 45.0% | |
TTAGGGTTAGGGTTAGGGTT+AGG | + | tig0024026:40772-40791 | Msa1413390:intron | 45.0% | |
TAGGGTTAGGGTTAGGGTTA+GGG | + | tig0024026:40773-40792 | Msa1413390:intron | 45.0% | |
CTTCAGTCAAAGCAATGACC+TGG | - | tig0024026:41311-41330 | None:intergenic | 45.0% | |
AGTTTATTGTGGGTGGGTGT+TGG | - | tig0024026:41384-41403 | None:intergenic | 45.0% | |
AACACCCACCCACAATAAAC+TGG | + | tig0024026:41383-41402 | Msa1413390:CDS | 45.0% | |
GATGGTCAAAGTGGGTATGA+AGG | - | tig0024026:41497-41516 | None:intergenic | 45.0% | |
!! | ATTTGGTGTGTAAGCCTCGA+CGG | - | tig0024026:41589-41608 | None:intergenic | 45.0% |
AGGACTAGGATTGCATCAAG+TGG | - | tig0024026:41672-41691 | None:intergenic | 45.0% | |
GGAATCACTTTATCCTAGGG+AGG | + | tig0024026:42133-42152 | Msa1413390:intron | 45.0% | |
CATTCTGTTGATGCTGAGTG+AGG | - | tig0024026:42296-42315 | None:intergenic | 45.0% | |
GTGTTCTGTACTCCTTAGAG+AGG | + | tig0024026:42461-42480 | Msa1413390:intron | 45.0% | |
AGGTAGATCCCGCTAACATA+AGG | + | tig0024026:42656-42675 | Msa1413390:intron | 45.0% | |
AGTTGCTGAAGCTACAAAGC+AGG | + | tig0024026:42723-42742 | Msa1413390:CDS | 45.0% | |
CAAACGGAAAATTGCGCAAG+CGG | + | tig0024026:42750-42769 | Msa1413390:CDS | 45.0% | |
!! | TTGCTTTTCCCTTGGTTGTC+TGG | - | tig0024026:43184-43203 | None:intergenic | 45.0% |
GCAATGATACTTCTCTCCTG+TGG | - | tig0024026:43461-43480 | None:intergenic | 45.0% | |
CCCTTGAATCGGTTGTAAGT+TGG | + | tig0024026:43595-43614 | Msa1413390:intron | 45.0% | |
!! | AGATTGGTTTCTTCTCGGGA+AGG | + | tig0024026:43816-43835 | Msa1413390:intron | 45.0% |
TCCTGATGATCCTCAAGGAA+AGG | + | tig0024026:43862-43881 | Msa1413390:CDS | 45.0% | |
ACCTTTCCTTGAGGATCATC+AGG | - | tig0024026:43866-43885 | None:intergenic | 45.0% | |
GATGATCCTCAAGGAAAGGT+TGG | + | tig0024026:43866-43885 | Msa1413390:CDS | 45.0% | |
CATACAATCGAAGGGCTAAC+TGG | - | tig0024026:43992-44011 | None:intergenic | 45.0% | |
GCTCAAACCAATCACTGTAG+AGG | + | tig0024026:44022-44041 | Msa1413390:three_prime_UTR | 45.0% | |
CAAACAGCCTCTACAGTGAT+TGG | - | tig0024026:44032-44051 | None:intergenic | 45.0% | |
AGAAGATGCAAGGTGGTAGC+GGG | + | tig0024026:40649-40668 | Msa1413390:exon | 50.0% | |
!! | TCTATCTCATGGCGGACATC+AGG | - | tig0024026:41127-41146 | None:intergenic | 50.0% |
GTTGGAGATTGGGTGGAAGT+GGG | - | tig0024026:41366-41385 | None:intergenic | 50.0% | |
TGTTGGAGATTGGGTGGAAG+TGG | - | tig0024026:41367-41386 | None:intergenic | 50.0% | |
GTCGAGGCTTACACACCAAA+TGG | + | tig0024026:41588-41607 | Msa1413390:CDS | 50.0% | |
GATGTAATGCAGGGCTCCAT+AGG | - | tig0024026:41692-41711 | None:intergenic | 50.0% | |
TGCACTCATGGCTCATGTCA+TGG | - | tig0024026:41954-41973 | None:intergenic | 50.0% | |
ACTTGGAAGTAAGCCTCCCT+AGG | - | tig0024026:42149-42168 | None:intergenic | 50.0% | |
ACTCGCTCAGCTTCAACCAA+AGG | - | tig0024026:42706-42725 | None:intergenic | 50.0% | |
GGCTCTATACGAAGCTTTGC+AGG | - | tig0024026:42805-42824 | None:intergenic | 50.0% | |
CACAACTCACCACATCCTCA+GGG | - | tig0024026:42834-42853 | None:intergenic | 50.0% | |
ACACAACTCACCACATCCTC+AGG | - | tig0024026:42835-42854 | None:intergenic | 50.0% | |
CAGCAGTTCCAGACAACCAA+GGG | + | tig0024026:43173-43192 | Msa1413390:CDS | 50.0% | |
GTCACACCAACCTTTCCTTG+AGG | - | tig0024026:43875-43894 | None:intergenic | 50.0% | |
!! | CAAGGAAAGGTTGGTGTGAC+TGG | + | tig0024026:43875-43894 | Msa1413390:CDS | 50.0% |
!! | AAGGTTGGTGTGACTGGAAG+TGG | + | tig0024026:43881-43900 | Msa1413390:CDS | 50.0% |
!! | AGGTTGGTGTGACTGGAAGT+GGG | + | tig0024026:43882-43901 | Msa1413390:CDS | 50.0% |
CATGGAAAGAGAGCTCTCCG+AGG | + | tig0024026:40893-40912 | Msa1413390:CDS | 55.0% | |
!! | GTGGGTGGGTGTTGGAGATT+GGG | - | tig0024026:41376-41395 | None:intergenic | 55.0% |
!! | TGTGGGTGGGTGTTGGAGAT+TGG | - | tig0024026:41377-41396 | None:intergenic | 55.0% |
TCCTGTTGGCACCAGAGTTC+AGG | + | tig0024026:41527-41546 | Msa1413390:CDS | 55.0% | |
GTGGTATGATGCAACCGTCG+AGG | + | tig0024026:41572-41591 | Msa1413390:CDS | 55.0% | |
ATGCAGGGCTCCATAGGACT+AGG | - | tig0024026:41686-41705 | None:intergenic | 55.0% | |
TATAGAGCCCGATGACCCTG+AGG | + | tig0024026:42816-42835 | Msa1413390:CDS | 55.0% | |
ACCACATCCTCAGGGTCATC+GGG | - | tig0024026:42826-42845 | None:intergenic | 55.0% | |
CACCACATCCTCAGGGTCAT+CGG | - | tig0024026:42827-42846 | None:intergenic | 55.0% | |
GCAGCAGTTCCAGACAACCA+AGG | + | tig0024026:43172-43191 | Msa1413390:CDS | 55.0% | |
GGTGTGACTGGAAGTGGGAA+AGG | + | tig0024026:43887-43906 | Msa1413390:CDS | 55.0% | |
!! | CTCATGGCGGACATCAGGAC+AGG | - | tig0024026:41122-41141 | None:intergenic | 60.0% |
!! | GGTGGGTGTTGGAGATTGGG+TGG | - | tig0024026:41373-41392 | None:intergenic | 60.0% |
! | GCCTGAACTCTGGTGCCAAC+AGG | - | tig0024026:41531-41550 | None:intergenic | 60.0% |
GCCCGATGACCCTGAGGATG+TGG | + | tig0024026:42822-42841 | Msa1413390:CDS | 65.0% | |
!! | GCAAGGTGGTAGCGGGCGTG+AGG | + | tig0024026:40656-40675 | Msa1413390:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024026 | gene | 40479 | 44160 | 40479 | ID=Msa1413390;Name=Msa1413390 |
tig0024026 | mRNA | 40479 | 44160 | 40479 | ID=Msa1413390-mRNA-1;Parent=Msa1413390;Name=Msa1413390-mRNA-1;_AED=0.16;_eAED=0.16;_QI=175|1|1|1|1|1|7|181|297 |
tig0024026 | exon | 40479 | 40749 | 40479 | ID=Msa1413390-mRNA-1:exon:21131;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 40846 | 40914 | 40846 | ID=Msa1413390-mRNA-1:exon:21132;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 41312 | 41404 | 41312 | ID=Msa1413390-mRNA-1:exon:21133;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 41492 | 41650 | 41492 | ID=Msa1413390-mRNA-1:exon:21134;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 42658 | 42843 | 42658 | ID=Msa1413390-mRNA-1:exon:21135;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 43080 | 43208 | 43080 | ID=Msa1413390-mRNA-1:exon:21136;Parent=Msa1413390-mRNA-1 |
tig0024026 | exon | 43818 | 44160 | 43818 | ID=Msa1413390-mRNA-1:exon:21137;Parent=Msa1413390-mRNA-1 |
tig0024026 | five_prime_UTR | 40479 | 40653 | 40479 | ID=Msa1413390-mRNA-1:five_prime_utr;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 40654 | 40749 | 40654 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 40846 | 40914 | 40846 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 41312 | 41404 | 41312 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 41492 | 41650 | 41492 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 42658 | 42843 | 42658 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 43080 | 43208 | 43080 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | CDS | 43818 | 43979 | 43818 | ID=Msa1413390-mRNA-1:cds;Parent=Msa1413390-mRNA-1 |
tig0024026 | three_prime_UTR | 43980 | 44160 | 43980 | ID=Msa1413390-mRNA-1:three_prime_utr;Parent=Msa1413390-mRNA-1 |
Gene Sequence |
Protein sequence |