Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692750 | XP_013458715.1 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692750 | sp|Q6DEY1|SPF30_XENTR | 25.795 | 283 | 139 | 8 | 18 | 285 | 4 | 230 | 5.17e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692750 | A0A072USW8 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0692750 | 0.819840 | 9.401804e-53 | -8.615850e-47 |
| Msa0029260 | Msa0692750 | 0.827851 | 1.244947e-54 | -8.615850e-47 |
| Msa0030300 | Msa0692750 | 0.818055 | 2.393084e-52 | -8.615850e-47 |
| Msa0037840 | Msa0692750 | 0.830477 | 2.873161e-55 | -8.615850e-47 |
| Msa0038870 | Msa0692750 | 0.814422 | 1.553587e-51 | -8.615850e-47 |
| Msa0043980 | Msa0692750 | 0.813449 | 2.545055e-51 | -8.615850e-47 |
| Msa0074750 | Msa0692750 | 0.812292 | 4.562955e-51 | -8.615850e-47 |
| Msa0077900 | Msa0692750 | 0.803691 | 3.089317e-49 | -8.615850e-47 |
| Msa0090520 | Msa0692750 | 0.800288 | 1.546462e-48 | -8.615850e-47 |
| Msa0090550 | Msa0692750 | 0.858821 | 6.330507e-63 | -8.615850e-47 |
| Msa0091610 | Msa0692750 | 0.823336 | 1.463271e-53 | -8.615850e-47 |
| Msa0115370 | Msa0692750 | 0.803374 | 3.594782e-49 | -8.615850e-47 |
| Msa0610130 | Msa0692750 | 0.811031 | 8.580886e-51 | -8.615850e-47 |
| Msa0610390 | Msa0692750 | 0.812685 | 3.742979e-51 | -8.615850e-47 |
| Msa0614510 | Msa0692750 | 0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0618950 | Msa0692750 | 0.803478 | 3.419875e-49 | -8.615850e-47 |
| Msa0618970 | Msa0692750 | 0.816764 | 4.673586e-52 | -8.615850e-47 |
| Msa0650920 | Msa0692750 | 0.810059 | 1.391468e-50 | -8.615850e-47 |
| Msa0662630 | Msa0692750 | 0.802611 | 5.168147e-49 | -8.615850e-47 |
| Msa0687020 | Msa0692750 | 0.809759 | 1.614525e-50 | -8.615850e-47 |
| Msa0692750 | Msa0692940 | 0.831409 | 1.696826e-55 | -8.615850e-47 |
| Msa0692750 | Msa0697720 | 0.818948 | 1.501516e-52 | -8.615850e-47 |
| Msa0692750 | Msa0703910 | 0.800153 | 1.647164e-48 | -8.615850e-47 |
| Msa0692750 | Msa0705390 | 0.814220 | 1.721338e-51 | -8.615850e-47 |
| Msa0692750 | Msa0722020 | 0.831749 | 1.399419e-55 | -8.615850e-47 |
| Msa0692750 | Msa0750850 | 0.803497 | 3.389175e-49 | -8.615850e-47 |
| Msa0692750 | Msa0752700 | 0.809151 | 2.180551e-50 | -8.615850e-47 |
| Msa0692750 | Msa0763020 | 0.817121 | 3.885270e-52 | -8.615850e-47 |
| Msa0692750 | Msa0763070 | 0.820278 | 7.465094e-53 | -8.615850e-47 |
| Msa0692750 | Msa0765180 | 0.826315 | 2.902744e-54 | -8.615850e-47 |
| Msa0692750 | Msa0794970 | 0.810831 | 9.479558e-51 | -8.615850e-47 |
| Msa0692750 | Msa0800370 | 0.808875 | 2.498133e-50 | -8.615850e-47 |
| Msa0692750 | Msa0805500 | 0.823439 | 1.384442e-53 | -8.615850e-47 |
| Msa0692750 | Msa0827280 | 0.828801 | 7.346809e-55 | -8.615850e-47 |
| Msa0692750 | Msa0831100 | 0.821697 | 3.517043e-53 | -8.615850e-47 |
| Msa0692750 | Msa0861470 | 0.803823 | 2.900053e-49 | -8.615850e-47 |
| Msa0692750 | Msa0861570 | 0.814551 | 1.454254e-51 | -8.615850e-47 |
| Msa0692750 | Msa0872440 | 0.812932 | 3.305985e-51 | -8.615850e-47 |
| Msa0692750 | Msa0879860 | 0.803188 | 3.926506e-49 | -8.615850e-47 |
| Msa0692750 | Msa0898760 | 0.815612 | 8.456964e-52 | -8.615850e-47 |
| Msa0692750 | Msa0928120 | 0.807467 | 4.983955e-50 | -8.615850e-47 |
| Msa0692750 | Msa0930140 | 0.824750 | 6.813951e-54 | -8.615850e-47 |
| Msa0692750 | Msa1024750 | 0.801561 | 8.495746e-49 | -8.615850e-47 |
| Msa0692750 | Msa1025940 | 0.808460 | 3.064245e-50 | -8.615850e-47 |
| Msa0692750 | Msa1029070 | 0.801336 | 9.448642e-49 | -8.615850e-47 |
| Msa0692750 | Msa1041850 | 0.812627 | 3.855128e-51 | -8.615850e-47 |
| Msa0692750 | Msa1063510 | 0.801855 | 7.395103e-49 | -8.615850e-47 |
| Msa0692750 | Msa1071320 | 0.817254 | 3.627436e-52 | -8.615850e-47 |
| Msa0692750 | Msa1077030 | 0.820227 | 7.668749e-53 | -8.615850e-47 |
| Msa0692750 | Msa1089320 | 0.845274 | 4.496918e-59 | -8.615850e-47 |
| Msa0692750 | Msa1096230 | 0.806545 | 7.809647e-50 | -8.615850e-47 |
| Msa0692750 | Msa1133230 | 0.803414 | 3.526325e-49 | -8.615850e-47 |
| Msa0692750 | Msa1202580 | 0.800707 | 1.270032e-48 | -8.615850e-47 |
| Msa0692750 | Msa1203880 | 0.823378 | 1.430913e-53 | -8.615850e-47 |
| Msa0692750 | Msa1204530 | 0.805157 | 1.528663e-49 | -8.615850e-47 |
| Msa0692750 | Msa1204630 | 0.807870 | 4.092341e-50 | -8.615850e-47 |
| Msa0692750 | Msa1253810 | 0.800300 | 1.537510e-48 | -8.615850e-47 |
| Msa0692750 | Msa1265590 | 0.824694 | 7.026790e-54 | -8.615850e-47 |
| Msa0692750 | Msa1279590 | 0.800496 | 1.402521e-48 | -8.615850e-47 |
| Msa0692750 | Msa1336560 | 0.808109 | 3.639565e-50 | -8.615850e-47 |
| Msa0692750 | Msa1362420 | 0.820313 | 7.325994e-53 | -8.615850e-47 |
| Msa0692750 | Msa1364210 | 0.847364 | 1.211893e-59 | -8.615850e-47 |
| Msa0692750 | Msa1377800 | 0.857122 | 2.023455e-62 | -8.615850e-47 |
| Msa0692750 | Msa1389850 | 0.800021 | 1.752235e-48 | -8.615850e-47 |
| Msa0692750 | Msa1413390 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
| Msa0692750 | Msa1418850 | 0.812852 | 3.441060e-51 | -8.615850e-47 |
| Msa0692750 | Msa1419640 | 0.810614 | 1.055934e-50 | -8.615850e-47 |
| Msa0692750 | Msa1436520 | 0.806270 | 8.923176e-50 | -8.615850e-47 |
| Msa0692750 | Msa1448630 | 0.811318 | 7.432880e-51 | -8.615850e-47 |
| Msa0692750 | Msa1450720 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0692750 | Msa1454680 | 0.820563 | 6.421748e-53 | -8.615850e-47 |
| Msa0692750 | Msa1461280 | 0.828322 | 9.588800e-55 | -8.615850e-47 |
| Msa0137990 | Msa0692750 | 0.800041 | 1.735993e-48 | -8.615850e-47 |
| Msa0167980 | Msa0692750 | 0.819809 | 9.553857e-53 | -8.615850e-47 |
| Msa0169300 | Msa0692750 | 0.825079 | 5.699381e-54 | -8.615850e-47 |
| Msa0183460 | Msa0692750 | 0.831050 | 2.079070e-55 | -8.615850e-47 |
| Msa0183870 | Msa0692750 | 0.850805 | 1.339212e-60 | -8.615850e-47 |
| Msa0191070 | Msa0692750 | 0.851918 | 6.488465e-61 | -8.615850e-47 |
| Msa0233370 | Msa0692750 | 0.831361 | 1.743466e-55 | -8.615850e-47 |
| Msa0385490 | Msa0692750 | 0.817985 | 2.482557e-52 | -8.615850e-47 |
| Msa0392270 | Msa0692750 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
| Msa0408390 | Msa0692750 | 0.810461 | 1.139804e-50 | -8.615850e-47 |
| Msa0442610 | Msa0692750 | 0.811501 | 6.784229e-51 | -8.615850e-47 |
| Msa0458640 | Msa0692750 | 0.812822 | 3.493916e-51 | -8.615850e-47 |
| Msa0465550 | Msa0692750 | 0.803700 | 3.076328e-49 | -8.615850e-47 |
| Msa0481810 | Msa0692750 | 0.822215 | 2.668612e-53 | -8.615850e-47 |
| Msa0251770 | Msa0692750 | 0.800681 | 1.286084e-48 | -8.615850e-47 |
| Msa0257490 | Msa0692750 | 0.818399 | 2.000530e-52 | -8.615850e-47 |
| Msa0261720 | Msa0692750 | 0.801848 | 7.417458e-49 | -8.615850e-47 |
| Msa0265600 | Msa0692750 | 0.815802 | 7.670680e-52 | -8.615850e-47 |
| Msa0275360 | Msa0692750 | 0.805126 | 1.551522e-49 | -8.615850e-47 |
| Msa0296920 | Msa0692750 | 0.813882 | 2.043308e-51 | -8.615850e-47 |
| Msa0311720 | Msa0692750 | 0.817665 | 2.931687e-52 | -8.615850e-47 |
| Msa0313930 | Msa0692750 | 0.823364 | 1.441619e-53 | -8.615850e-47 |
| Msa0320590 | Msa0692750 | 0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0484740 | Msa0692750 | 0.821340 | 4.253988e-53 | -8.615850e-47 |
| Msa0556790 | Msa0692750 | 0.802342 | 5.871211e-49 | -8.615850e-47 |
| Msa0560500 | Msa0692750 | 0.831223 | 1.885740e-55 | -8.615850e-47 |
| Msa0567240 | Msa0692750 | 0.805744 | 1.151137e-49 | -8.615850e-47 |
| Msa0588240 | Msa0692750 | 0.819127 | 1.367155e-52 | -8.615850e-47 |
| Msa0590650 | Msa0692750 | 0.802845 | 4.623049e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692750 | MtrunA17_Chr4g0076891 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692750 | AT2G02570.1 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.92e-143 | 405 |
| Msa0692750 | AT2G02570.4 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.92e-143 | 405 |
| Msa0692750 | AT2G02570.2 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.92e-143 | 405 |
| Msa0692750 | AT2G02570.3 | 63.300 | 297 | 83 | 4 | 12 | 297 | 6 | 287 | 1.03e-132 | 378 |
Find 87 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCGCATCTTAGACTTAA+AGG | 0.209233 | 4_4:+61418171 | None:intergenic |
| TGTGGGTGGGTGTTGGAGAT+TGG | 0.224072 | 4_4:+61419665 | None:intergenic |
| GTGGGTGGGTGTTGGAGATT+GGG | 0.293108 | 4_4:+61419666 | None:intergenic |
| GGCTCTATACGAAGCTTTGC+AGG | 0.323302 | 4_4:+61418477 | None:intergenic |
| TCCTGTTGGCACCAGAGTTC+AGG | 0.328664 | 4_4:-61419512 | Msa0692750:CDS |
| TCAACAGTTCCTTCTTGAAT+TGG | 0.334241 | 4_4:+61418600 | None:intergenic |
| CTTCAAGATTGGTTTCTTCT+CGG | 0.338340 | 4_4:-61417468 | Msa0692750:intron |
| AGAAGGAACTGTTGATCCTT+TGG | 0.344531 | 4_4:-61418592 | Msa0692750:CDS |
| AAGTGTTGCACATACATAAA+AGG | 0.361047 | 4_4:+61417158 | None:intergenic |
| TGTTGGAGATTGGGTGGAAG+TGG | 0.361676 | 4_4:+61419675 | None:intergenic |
| CAAGGAAAGGTTGGTGTGAC+TGG | 0.362128 | 4_4:-61417404 | Msa0692750:CDS |
| TTACAAACAACAACTTCATC+AGG | 0.389377 | 4_4:-61420291 | Msa0692750:intron |
| CATACAATCGAAGGGCTAAC+TGG | 0.395003 | 4_4:+61417290 | None:intergenic |
| CAAACAGCCTCTACAGTGAT+TGG | 0.395110 | 4_4:+61417250 | None:intergenic |
| CAACAGGAAATTTGTGTTGA+TGG | 0.395602 | 4_4:+61419527 | None:intergenic |
| ACCTTTCCTTGAGGATCATC+AGG | 0.403855 | 4_4:+61417416 | None:intergenic |
| AACACCCACCCACAATAAAC+TGG | 0.407152 | 4_4:-61419656 | Msa0692750:intron |
| AAGGTTGGTGTGACTGGAAG+TGG | 0.416029 | 4_4:-61417398 | Msa0692750:CDS |
| TTGAATTGGCCTTATGTTAG+CGG | 0.420910 | 4_4:+61418614 | None:intergenic |
| CAGGCTGTTTATAGTGATGA+TGG | 0.431282 | 4_4:-61419493 | Msa0692750:CDS |
| GCCTGAACTCTGGTGCCAAC+AGG | 0.438372 | 4_4:+61419511 | None:intergenic |
| TTCAAGATTGGTTTCTTCTC+GGG | 0.438391 | 4_4:-61417467 | Msa0692750:intron |
| ATGTATGTGCAACACTTACA+TGG | 0.439586 | 4_4:-61417152 | Msa0692750:three_prime_UTR |
| AGTTTATTGTGGGTGGGTGT+TGG | 0.447717 | 4_4:+61419658 | None:intergenic |
| ACACAACTCACCACATCCTC+AGG | 0.452174 | 4_4:+61418447 | None:intergenic |
| ACCACATCCTCAGGGTCATC+GGG | 0.452351 | 4_4:+61418456 | None:intergenic |
| GTTGGAGATTGGGTGGAAGT+GGG | 0.456301 | 4_4:+61419676 | None:intergenic |
| AAGAAGATGCAAGGTGGTAG+CGG | 0.461653 | 4_4:-61420371 | Msa0692750:exon |
| TTGTTTGTAAGTAGAAAGAT+TGG | 0.462862 | 4_4:+61420304 | None:intergenic |
| TACAATCGAGAATGATGATT+AGG | 0.470705 | 4_4:-61417321 | Msa0692750:exon |
| TAGCTGACATAATAACCATT+TGG | 0.474920 | 4_4:+61419436 | None:intergenic |
| CACCACATCCTCAGGGTCAT+CGG | 0.475099 | 4_4:+61418455 | None:intergenic |
| GGTGTGACTGGAAGTGGGAA+AGG | 0.475251 | 4_4:-61417392 | Msa0692750:CDS |
| AGGTAGATCCCGCTAACATA+AGG | 0.476232 | 4_4:-61418623 | Msa0692750:CDS |
| TCGACATACTCAGAATTAGA+TGG | 0.482981 | 4_4:+61420167 | None:intergenic |
| TGAATTGGCCTTATGTTAGC+GGG | 0.489549 | 4_4:+61418615 | None:intergenic |
| ATTATGTCAGCTATGACACT+TGG | 0.510217 | 4_4:-61419426 | Msa0692750:CDS |
| GTCGAGGCTTACACACCAAA+TGG | 0.519193 | 4_4:-61419451 | Msa0692750:CDS |
| AAAATAAGCGGCAAAATGCT+TGG | 0.521225 | 4_4:-61418129 | Msa0692750:CDS |
| AGGCTGTTTATAGTGATGAT+GGG | 0.524754 | 4_4:-61419492 | Msa0692750:CDS |
| AGAAGATGCAAGGTGGTAGC+GGG | 0.534654 | 4_4:-61420370 | Msa0692750:exon |
| TTATGTCAGCTATGACACTT+GGG | 0.535353 | 4_4:-61419425 | Msa0692750:CDS |
| ACATACCAGTTTATTGTGGG+TGG | 0.536199 | 4_4:+61419651 | None:intergenic |
| CGTACATACCAGTTTATTGT+GGG | 0.536234 | 4_4:+61419648 | None:intergenic |
| AGTTGCTGAAGCTACAAAGC+AGG | 0.562918 | 4_4:-61418556 | Msa0692750:CDS |
| TCCTGATGATCCTCAAGGAA+AGG | 0.563297 | 4_4:-61417417 | Msa0692750:CDS |
| CTACAAAGCAGGCTATCAAA+CGG | 0.564191 | 4_4:-61418545 | Msa0692750:CDS |
| GGTGGGTGTTGGAGATTGGG+TGG | 0.565121 | 4_4:+61419669 | None:intergenic |
| ACTATAAACAGCCTGAACTC+TGG | 0.565916 | 4_4:+61419501 | None:intergenic |
| ATAAAGAGAAAGAAGATGCA+AGG | 0.565982 | 4_4:-61420380 | Msa0692750:exon |
| AAATCTCCTGATGATCCTCA+AGG | 0.567592 | 4_4:-61417422 | Msa0692750:CDS |
| GCAAGGTGGTAGCGGGCGTG+AGG | 0.569536 | 4_4:-61420363 | Msa0692750:CDS |
| CAAACGGAAAATTGCGCAAG+CGG | 0.570501 | 4_4:-61418529 | Msa0692750:CDS |
| CATCAACACAAATTTCCTGT+TGG | 0.571494 | 4_4:-61419526 | Msa0692750:CDS |
| ACGTACATACCAGTTTATTG+TGG | 0.574482 | 4_4:+61419647 | None:intergenic |
| GATGATCCTCAAGGAAAGGT+TGG | 0.575071 | 4_4:-61417413 | Msa0692750:CDS |
| GCCCGATGACCCTGAGGATG+TGG | 0.576654 | 4_4:-61418457 | Msa0692750:intron |
| ATTTGTGTTGATGGTCAAAG+TGG | 0.580757 | 4_4:+61419536 | None:intergenic |
| AACATAAGGCCAATTCAAGA+AGG | 0.580826 | 4_4:-61418609 | Msa0692750:CDS |
| ATTTGGTGTGTAAGCCTCGA+CGG | 0.580845 | 4_4:+61419453 | None:intergenic |
| TTTATAGTGATGATGGGGAG+TGG | 0.581469 | 4_4:-61419486 | Msa0692750:CDS |
| GGCTGTTTATAGTGATGATG+GGG | 0.588465 | 4_4:-61419491 | Msa0692750:CDS |
| AGGTTGGTGTGACTGGAAGT+GGG | 0.590449 | 4_4:-61417397 | Msa0692750:CDS |
| CATACCAGTTTATTGTGGGT+GGG | 0.590879 | 4_4:+61419652 | None:intergenic |
| CAGCAGTTCCAGACAACCAA+GGG | 0.593266 | 4_4:-61418106 | Msa0692750:CDS |
| GATGGTCAAAGTGGGTATGA+AGG | 0.597115 | 4_4:+61419545 | None:intergenic |
| ACTCGCTCAGCTTCAACCAA+AGG | 0.606860 | 4_4:+61418576 | None:intergenic |
| AGATTGGTTTCTTCTCGGGA+AGG | 0.610846 | 4_4:-61417463 | Msa0692750:CDS |
| AGGTGTGGTGCAGAAAGGAG+TGG | 0.625574 | 4_4:-61420537 | None:intergenic |
| AAGAGAAAGAAGATGCAAGG+TGG | 0.627035 | 4_4:-61420377 | Msa0692750:exon |
| TTTGTGTTGATGGTCAAAGT+GGG | 0.628380 | 4_4:+61419537 | None:intergenic |
| CACTTGGGGTAATAAAGAAG+AGG | 0.630391 | 4_4:-61419410 | Msa0692750:intron |
| TTGAAGTCACCCAAAATAAG+CGG | 0.630424 | 4_4:-61418141 | Msa0692750:CDS |
| AAAGTAAGTAAACGTGCGTG+AGG | 0.631941 | 4_4:-61420472 | Msa0692750:five_prime_UTR |
| GCAGCAGTTCCAGACAACCA+AGG | 0.644897 | 4_4:-61418107 | Msa0692750:CDS |
| TGTTACATACATACAATCGA+AGG | 0.646002 | 4_4:+61417281 | None:intergenic |
| GCTCAAACCAATCACTGTAG+AGG | 0.646028 | 4_4:-61417257 | Msa0692750:three_prime_UTR |
| CACAACTCACCACATCCTCA+GGG | 0.646183 | 4_4:+61418448 | None:intergenic |
| TAATTCTGAGTATGTCGACA+TGG | 0.651465 | 4_4:-61420162 | Msa0692750:CDS |
| CTTTAAGTCTAAGATGCGGA+TGG | 0.652129 | 4_4:-61418170 | Msa0692750:CDS |
| GTTACATACATACAATCGAA+GGG | 0.653029 | 4_4:+61417282 | None:intergenic |
| GTCACACCAACCTTTCCTTG+AGG | 0.671537 | 4_4:+61417407 | None:intergenic |
| GTGGTATGATGCAACCGTCG+AGG | 0.674698 | 4_4:-61419467 | Msa0692750:CDS |
| TATGTCAGCTATGACACTTG+GGG | 0.685361 | 4_4:-61419424 | Msa0692750:CDS |
| ATGCCTTTAAGTCTAAGATG+CGG | 0.694744 | 4_4:-61418174 | Msa0692750:CDS |
| TATAGAGCCCGATGACCCTG+AGG | 0.709309 | 4_4:-61418463 | Msa0692750:CDS |
| CATGGAAAGAGAGCTCTCCG+AGG | 0.756940 | 4_4:-61420144 | Msa0692750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTGTTAATTAATAATAAT+GGG | + | chr4_4:61417655-61417674 | None:intergenic | 10.0% |
| !! | TTCTTGTTAATTAATAATAA+TGG | + | chr4_4:61417656-61417675 | None:intergenic | 10.0% |
| !!! | AATAAAAATGAATATTTTGT+AGG | - | chr4_4:61418923-61418942 | Msa0692750:intron | 10.0% |
| !!! | ATAAAAATGAATATTTTGTA+GGG | - | chr4_4:61418924-61418943 | Msa0692750:intron | 10.0% |
| !! | TTTATTGAAAAAAGAATATA+AGG | - | chr4_4:61420055-61420074 | Msa0692750:intron | 10.0% |
| !!! | TTTGTTTCTTTGTTTTTTTA+GGG | - | chr4_4:61417397-61417416 | Msa0692750:CDS | 15.0% |
| !!! | GTTGTTATTATTAATTGAAT+GGG | + | chr4_4:61417633-61417652 | None:intergenic | 15.0% |
| !! | AAATAGATAAATAATGTTGT+TGG | + | chr4_4:61417820-61417839 | None:intergenic | 15.0% |
| !!! | AAACTCATTATAAAATTTTC+TGG | - | chr4_4:61418381-61418400 | Msa0692750:intron | 15.0% |
| !!! | AACAATAAAAAGTATTTTAC+TGG | - | chr4_4:61418632-61418651 | Msa0692750:intron | 15.0% |
| !!! | TGGAGTATTTTTTTTTTATA+GGG | + | chr4_4:61418965-61418984 | None:intergenic | 15.0% |
| !!! | CTATTTTAAGATTATTGTTT+TGG | - | chr4_4:61420483-61420502 | Msa0692750:five_prime_UTR | 15.0% |
| !!! | GTTTGTTTCTTTGTTTTTTT+AGG | - | chr4_4:61417396-61417415 | Msa0692750:CDS | 20.0% |
| !!! | GGTTGTTATTATTAATTGAA+TGG | + | chr4_4:61417634-61417653 | None:intergenic | 20.0% |
| !!! | ATTAATGTTTGCTATTGAAA+GGG | - | chr4_4:61418718-61418737 | Msa0692750:intron | 20.0% |
| !! | AGAACACTTGTTTATATAAA+AGG | + | chr4_4:61418830-61418849 | None:intergenic | 20.0% |
| !!! | TACCTGTTTTTATAAAATGT+AGG | - | chr4_4:61418875-61418894 | Msa0692750:intron | 20.0% |
| !!! | ACCTGTTTTTATAAAATGTA+GGG | - | chr4_4:61418876-61418895 | Msa0692750:intron | 20.0% |
| !!! | CTGGAGTATTTTTTTTTTAT+AGG | + | chr4_4:61418966-61418985 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAAATACTCCAG+TGG | - | chr4_4:61418966-61418985 | Msa0692750:intron | 20.0% |
| !!! | GTCTTAATAAATATTTTCCT+TGG | - | chr4_4:61419286-61419305 | Msa0692750:intron | 20.0% |
| !!! | AGCTAAAAAATATTTTCACA+TGG | + | chr4_4:61419940-61419959 | None:intergenic | 20.0% |
| !! | ATATAAAACACAAATATCAG+TGG | + | chr4_4:61420105-61420124 | None:intergenic | 20.0% |
| ! | TTGTTTGTAAGTAGAAAGAT+TGG | + | chr4_4:61417364-61417383 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTTTTTAGGGTT+AGG | - | chr4_4:61417402-61417421 | Msa0692750:CDS | 25.0% |
| !!! | TCTTTGTTTTTTTAGGGTTA+GGG | - | chr4_4:61417403-61417422 | Msa0692750:CDS | 25.0% |
| ! | ATGAAAGAAAAGAAAAACCT+CGG | + | chr4_4:61417541-61417560 | None:intergenic | 25.0% |
| ! | GCTTCAAATTGAAATTGAAA+AGG | - | chr4_4:61417590-61417609 | Msa0692750:intron | 25.0% |
| ! | TGATGAGTAATGAATAGATT+CGG | + | chr4_4:61418069-61418088 | None:intergenic | 25.0% |
| !!! | CTATGTTTTTCACTGTTTTT+AGG | - | chr4_4:61418096-61418115 | Msa0692750:CDS | 25.0% |
| ! | TTTGCAGATGGTAAATAAAT+TGG | + | chr4_4:61418356-61418375 | None:intergenic | 25.0% |
| ! | TTCTCAACTAAACAAAAAAC+TGG | + | chr4_4:61418485-61418504 | None:intergenic | 25.0% |
| ! | TTAGTTGAGAAAAGAAATAG+AGG | - | chr4_4:61418494-61418513 | Msa0692750:CDS | 25.0% |
| !!! | CATTAATGTTTGCTATTGAA+AGG | - | chr4_4:61418717-61418736 | Msa0692750:intron | 25.0% |
| ! | GACAGATTCATAATTCTATA+GGG | + | chr4_4:61418761-61418780 | None:intergenic | 25.0% |
| ! | AGACAGATTCATAATTCTAT+AGG | + | chr4_4:61418762-61418781 | None:intergenic | 25.0% |
| !!! | TCGTCCCTATATATATTTTT+TGG | - | chr4_4:61418786-61418805 | Msa0692750:intron | 25.0% |
| ! | GGGTCCAAAAAATATATATA+GGG | + | chr4_4:61418793-61418812 | None:intergenic | 25.0% |
| ! | AGGGTCCAAAAAATATATAT+AGG | + | chr4_4:61418794-61418813 | None:intergenic | 25.0% |
| ! | AAAAGGTAGGAAACTAAAAA+GGG | + | chr4_4:61418813-61418832 | None:intergenic | 25.0% |
| ! | TAAAAGGTAGGAAACTAAAA+AGG | + | chr4_4:61418814-61418833 | None:intergenic | 25.0% |
| ! | CACTTGTTTATATAAAAGGT+AGG | + | chr4_4:61418826-61418845 | None:intergenic | 25.0% |
| !!! | CCTGTTTTTATAAAATGTAG+GGG | - | chr4_4:61418877-61418896 | Msa0692750:intron | 25.0% |
| !!! | TTTTTAGTTACTGATCTTCA+AGG | - | chr4_4:61418991-61419010 | Msa0692750:intron | 25.0% |
| !! | TTTTCTGCAAATGTATTTCT+TGG | - | chr4_4:61419352-61419371 | Msa0692750:intron | 25.0% |
| ! | AATAGTAGAGAAATTGAGAA+AGG | + | chr4_4:61419601-61419620 | None:intergenic | 25.0% |
| ! | TATGTCTTAAAGTGACTAAT+GGG | - | chr4_4:61419697-61419716 | Msa0692750:CDS | 25.0% |
| !! | TAAATTCAACAACTTTTCCA+GGG | + | chr4_4:61420039-61420058 | None:intergenic | 25.0% |
| !! | ATAAATTCAACAACTTTTCC+AGG | + | chr4_4:61420040-61420059 | None:intergenic | 25.0% |
| !! | ATTGTGAAAATTCTAGAGAT+CGG | + | chr4_4:61420082-61420101 | None:intergenic | 25.0% |
| ATAAAGAGAAAGAAGATGCA+AGG | - | chr4_4:61417285-61417304 | Msa0692750:three_prime_UTR | 30.0% | |
| TTACAAACAACAACTTCATC+AGG | - | chr4_4:61417374-61417393 | Msa0692750:CDS | 30.0% | |
| TGTTGTATGTATCTATCTCA+TGG | + | chr4_4:61417769-61417788 | None:intergenic | 30.0% | |
| ATTTAAGGAGACATTGGAAT+TGG | + | chr4_4:61417905-61417924 | None:intergenic | 30.0% | |
| TGTAGAATTTAAGGAGACAT+TGG | + | chr4_4:61417911-61417930 | None:intergenic | 30.0% | |
| ! | TATTTCATTTTGCTTAGCAG+TGG | + | chr4_4:61417969-61417988 | None:intergenic | 30.0% |
| TAGCTGACATAATAACCATT+TGG | + | chr4_4:61418232-61418251 | None:intergenic | 30.0% | |
| TGAGTATCAAATCATGTAAC+AGG | - | chr4_4:61418414-61418433 | Msa0692750:intron | 30.0% | |
| AGGAATGAAATTTCTCAACT+TGG | + | chr4_4:61418548-61418567 | None:intergenic | 30.0% | |
| TTGTTCTTTCCATTTCAACA+AGG | + | chr4_4:61418617-61418636 | None:intergenic | 30.0% | |
| ! | CCCCTACATTTTATAAAAAC+AGG | + | chr4_4:61418880-61418899 | None:intergenic | 30.0% |
| AGGGGCTAAAAATTGTTTAT+AGG | - | chr4_4:61418895-61418914 | Msa0692750:intron | 30.0% | |
| TCAGTAACTAAAAAAACCAC+TGG | + | chr4_4:61418985-61419004 | None:intergenic | 30.0% | |
| ! | ATATGTTGCTTGCTTATTAC+AGG | - | chr4_4:61419022-61419041 | Msa0692750:intron | 30.0% |
| AGAAAACTGGCAGATAAATT+TGG | + | chr4_4:61419407-61419426 | None:intergenic | 30.0% | |
| ! | AATTTATCTGCCAGTTTTCT+AGG | - | chr4_4:61419407-61419426 | Msa0692750:intron | 30.0% |
| ! | GTTAGCAAACATGTCATTTA+GGG | + | chr4_4:61419436-61419455 | None:intergenic | 30.0% |
| ! | AGTTAGCAAACATGTCATTT+AGG | + | chr4_4:61419437-61419456 | None:intergenic | 30.0% |
| TAGTTTCTATGCAAGAATGT+AGG | - | chr4_4:61419663-61419682 | Msa0692750:CDS | 30.0% | |
| GTATGTCTTAAAGTGACTAA+TGG | - | chr4_4:61419696-61419715 | Msa0692750:CDS | 30.0% | |
| TATGTTAGGATGGTCAAAAA+TGG | + | chr4_4:61419738-61419757 | None:intergenic | 30.0% | |
| TATCATTGCAGTCATTAAGT+TGG | - | chr4_4:61419858-61419877 | Msa0692750:intron | 30.0% | |
| AATCTATTTACCCCTTGAAT+CGG | - | chr4_4:61419970-61419989 | Msa0692750:intron | 30.0% | |
| ! | TTGTGAAAATTCTAGAGATC+GGG | + | chr4_4:61420081-61420100 | None:intergenic | 30.0% |
| !!! | AGAAAAGCATTTTCATCTGA+AGG | - | chr4_4:61420317-61420336 | Msa0692750:CDS | 30.0% |
| TACAATCGAGAATGATGATT+AGG | - | chr4_4:61420344-61420363 | Msa0692750:CDS | 30.0% | |
| GTTACATACATACAATCGAA+GGG | + | chr4_4:61420386-61420405 | None:intergenic | 30.0% | |
| TGTTACATACATACAATCGA+AGG | + | chr4_4:61420387-61420406 | None:intergenic | 30.0% | |
| !! | ATAACATGCATTGTTTTGTC+TGG | + | chr4_4:61420444-61420463 | None:intergenic | 30.0% |
| ! | AAGTGTTGCACATACATAAA+AGG | + | chr4_4:61420510-61420529 | None:intergenic | 30.0% |
| !!! | GTTTTTTTAGGGTTAGGGTT+AGG | - | chr4_4:61417408-61417427 | Msa0692750:CDS | 35.0% |
| ! | TTTGATTCCCTTCTCTTTTC+AGG | - | chr4_4:61417452-61417471 | Msa0692750:CDS | 35.0% |
| TCTCTAACCTGAAAAGAGAA+GGG | + | chr4_4:61417462-61417481 | None:intergenic | 35.0% | |
| TTCTCTAACCTGAAAAGAGA+AGG | + | chr4_4:61417463-61417482 | None:intergenic | 35.0% | |
| TCGACATACTCAGAATTAGA+TGG | + | chr4_4:61417501-61417520 | None:intergenic | 35.0% | |
| TAATTCTGAGTATGTCGACA+TGG | - | chr4_4:61417503-61417522 | Msa0692750:intron | 35.0% | |
| GCAAGATAGATAGAAGTGAT+GGG | + | chr4_4:61417713-61417732 | None:intergenic | 35.0% | |
| AGCAAGATAGATAGAAGTGA+TGG | + | chr4_4:61417714-61417733 | None:intergenic | 35.0% | |
| TGTATGTATCTATCTCATGG+CGG | + | chr4_4:61417766-61417785 | None:intergenic | 35.0% | |
| TCCTTAAATTCTACAACACC+AGG | - | chr4_4:61417916-61417935 | Msa0692750:intron | 35.0% | |
| !! | ACCTGGTGTTGTAGAATTTA+AGG | + | chr4_4:61417920-61417939 | None:intergenic | 35.0% |
| CGTACATACCAGTTTATTGT+GGG | + | chr4_4:61418020-61418039 | None:intergenic | 35.0% | |
| ACGTACATACCAGTTTATTG+TGG | + | chr4_4:61418021-61418040 | None:intergenic | 35.0% | |
| !! | TTTGTGTTGATGGTCAAAGT+GGG | + | chr4_4:61418131-61418150 | None:intergenic | 35.0% |
| !! | ATTTGTGTTGATGGTCAAAG+TGG | + | chr4_4:61418132-61418151 | None:intergenic | 35.0% |
| CAACAGGAAATTTGTGTTGA+TGG | + | chr4_4:61418141-61418160 | None:intergenic | 35.0% | |
| CATCAACACAAATTTCCTGT+TGG | - | chr4_4:61418139-61418158 | Msa0692750:CDS | 35.0% | |
| AGGCTGTTTATAGTGATGAT+GGG | - | chr4_4:61418173-61418192 | Msa0692750:CDS | 35.0% | |
| ATTATGTCAGCTATGACACT+TGG | - | chr4_4:61418239-61418258 | Msa0692750:intron | 35.0% | |
| TTATGTCAGCTATGACACTT+GGG | - | chr4_4:61418240-61418259 | Msa0692750:intron | 35.0% | |
| ATGTATGCAGATGTAATGCA+GGG | + | chr4_4:61418327-61418346 | None:intergenic | 35.0% | |
| AATGTATGCAGATGTAATGC+AGG | + | chr4_4:61418328-61418347 | None:intergenic | 35.0% | |
| GCAGATGGTAAATAAATTGG+AGG | + | chr4_4:61418353-61418372 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTGTTTTTGCAGA+TGG | + | chr4_4:61418368-61418387 | None:intergenic | 35.0% |
| AACGCTTCAATAAACGTGAT+GGG | + | chr4_4:61418460-61418479 | None:intergenic | 35.0% | |
| AAACGCTTCAATAAACGTGA+TGG | + | chr4_4:61418461-61418480 | None:intergenic | 35.0% | |
| TAGAGGAATCACTTTATCCT+AGG | - | chr4_4:61418511-61418530 | Msa0692750:CDS | 35.0% | |
| AGAGGAATCACTTTATCCTA+GGG | - | chr4_4:61418512-61418531 | Msa0692750:CDS | 35.0% | |
| !! | TTGAATTGGCCTTATGTTAG+CGG | + | chr4_4:61419054-61419073 | None:intergenic | 35.0% |
| AACATAAGGCCAATTCAAGA+AGG | - | chr4_4:61419056-61419075 | Msa0692750:intron | 35.0% | |
| TCAACAGTTCCTTCTTGAAT+TGG | + | chr4_4:61419068-61419087 | None:intergenic | 35.0% | |
| !!! | CATCTGTTGATTTTCAGTCA+CGG | - | chr4_4:61419159-61419178 | Msa0692750:intron | 35.0% |
| TAGAACAAGAGATCAAACCA+AGG | + | chr4_4:61419306-61419325 | None:intergenic | 35.0% | |
| GCAAATGTATTTCTTGGTAG+TGG | - | chr4_4:61419358-61419377 | Msa0692750:intron | 35.0% | |
| TTTAGGGAATCCTAGAAAAC+TGG | + | chr4_4:61419420-61419439 | None:intergenic | 35.0% | |
| ! | GGCATGTATTTTCTTACGTT+TGG | + | chr4_4:61419476-61419495 | None:intergenic | 35.0% |
| ! | ATGCCTTTAAGTCTAAGATG+CGG | - | chr4_4:61419491-61419510 | Msa0692750:CDS | 35.0% |
| TTGAAGTCACCCAAAATAAG+CGG | - | chr4_4:61419524-61419543 | Msa0692750:CDS | 35.0% | |
| !! | AGCATTTTGCCGCTTATTTT+GGG | + | chr4_4:61419536-61419555 | None:intergenic | 35.0% |
| !! | AAGCATTTTGCCGCTTATTT+TGG | + | chr4_4:61419537-61419556 | None:intergenic | 35.0% |
| AAAATAAGCGGCAAAATGCT+TGG | - | chr4_4:61419536-61419555 | Msa0692750:CDS | 35.0% | |
| AACCAAGGGAAAAGCAAAAA+AGG | - | chr4_4:61419573-61419592 | Msa0692750:intron | 35.0% | |
| !!! | TACCTTTTTTGCTTTTCCCT+TGG | + | chr4_4:61419578-61419597 | None:intergenic | 35.0% |
| ! | TTGTAAGTTGGATAGGAATG+AGG | - | chr4_4:61419993-61420012 | Msa0692750:intron | 35.0% |
| AAAAGTAATACCATCAACCC+TGG | - | chr4_4:61420019-61420038 | Msa0692750:intron | 35.0% | |
| ! | CTTTTGTGATGTATTCACTG+TGG | - | chr4_4:61420169-61420188 | Msa0692750:CDS | 35.0% |
| !! | CTTCAAGATTGGTTTCTTCT+CGG | - | chr4_4:61420197-61420216 | Msa0692750:intron | 35.0% |
| !! | TTCAAGATTGGTTTCTTCTC+GGG | - | chr4_4:61420198-61420217 | Msa0692750:intron | 35.0% |
| ! | GAAAATGCTTTTCTCTTCTC+TGG | + | chr4_4:61420311-61420330 | None:intergenic | 35.0% |
| ! | AAGCATTTTCATCTGAAGGA+TGG | - | chr4_4:61420321-61420340 | Msa0692750:CDS | 35.0% |
| ATGTATGTGCAACACTTACA+TGG | - | chr4_4:61420513-61420532 | Msa0692750:five_prime_UTR | 35.0% | |
| AAAGTAAGTAAACGTGCGTG+AGG | - | chr4_4:61417193-61417212 | Msa0692750:three_prime_UTR | 40.0% | |
| AAGAGAAAGAAGATGCAAGG+TGG | - | chr4_4:61417288-61417307 | Msa0692750:three_prime_UTR | 40.0% | |
| TATCTATCTTGCTTCTGTGC+AGG | - | chr4_4:61417721-61417740 | Msa0692750:intron | 40.0% | |
| CATACCAGTTTATTGTGGGT+GGG | + | chr4_4:61418016-61418035 | None:intergenic | 40.0% | |
| ACATACCAGTTTATTGTGGG+TGG | + | chr4_4:61418017-61418036 | None:intergenic | 40.0% | |
| ACTATAAACAGCCTGAACTC+TGG | + | chr4_4:61418167-61418186 | None:intergenic | 40.0% | |
| CAGGCTGTTTATAGTGATGA+TGG | - | chr4_4:61418172-61418191 | Msa0692750:CDS | 40.0% | |
| ! | GGCTGTTTATAGTGATGATG+GGG | - | chr4_4:61418174-61418193 | Msa0692750:CDS | 40.0% |
| !! | TTTATAGTGATGATGGGGAG+TGG | - | chr4_4:61418179-61418198 | Msa0692750:CDS | 40.0% |
| TATGTCAGCTATGACACTTG+GGG | - | chr4_4:61418241-61418260 | Msa0692750:intron | 40.0% | |
| CACTTGGGGTAATAAAGAAG+AGG | - | chr4_4:61418255-61418274 | Msa0692750:intron | 40.0% | |
| TTGATGCAATCCTAGTCCTA+TGG | - | chr4_4:61418299-61418318 | Msa0692750:intron | 40.0% | |
| TTTGCAGCACCTTGTTGAAA+TGG | - | chr4_4:61418605-61418624 | Msa0692750:CDS | 40.0% | |
| TGTTCTGTACTCCTTAGAGA+GGG | - | chr4_4:61418844-61418863 | Msa0692750:intron | 40.0% | |
| ! | GTACTTTTAGTCCCTCTCTA+AGG | + | chr4_4:61418858-61418877 | None:intergenic | 40.0% |
| !! | TGAATTGGCCTTATGTTAGC+GGG | + | chr4_4:61419053-61419072 | None:intergenic | 40.0% |
| AGAAGGAACTGTTGATCCTT+TGG | - | chr4_4:61419073-61419092 | Msa0692750:intron | 40.0% | |
| CTACAAAGCAGGCTATCAAA+CGG | - | chr4_4:61419120-61419139 | Msa0692750:intron | 40.0% | |
| CATCCGCATCTTAGACTTAA+AGG | + | chr4_4:61419497-61419516 | None:intergenic | 40.0% | |
| ! | CTTTAAGTCTAAGATGCGGA+TGG | - | chr4_4:61419495-61419514 | Msa0692750:CDS | 40.0% |
| GTTAGGATGGTCAAAAATGG+AGG | + | chr4_4:61419735-61419754 | None:intergenic | 40.0% | |
| !! | CATTGACTCGTATGTTAGGA+TGG | + | chr4_4:61419748-61419767 | None:intergenic | 40.0% |
| !! | CTGACATTGACTCGTATGTT+AGG | + | chr4_4:61419752-61419771 | None:intergenic | 40.0% |
| TTCTAGCCTGAATTTACCAC+AGG | - | chr4_4:61419828-61419847 | Msa0692750:intron | 40.0% | |
| TTCTCTCCTGTGGTAAATTC+AGG | + | chr4_4:61419837-61419856 | None:intergenic | 40.0% | |
| ! | CAACTTACAACCGATTCAAG+GGG | + | chr4_4:61419983-61420002 | None:intergenic | 40.0% |
| ! | CCAACTTACAACCGATTCAA+GGG | + | chr4_4:61419984-61420003 | None:intergenic | 40.0% |
| ! | TCCAACTTACAACCGATTCA+AGG | + | chr4_4:61419985-61420004 | None:intergenic | 40.0% |
| ! | GAATCGGTTGTAAGTTGGAT+AGG | - | chr4_4:61419986-61420005 | Msa0692750:intron | 40.0% |
| ! | TAAGTTGGATAGGAATGAGG+AGG | - | chr4_4:61419996-61420015 | Msa0692750:intron | 40.0% |
| ! | AACAACTTTTCCAGGGTTGA+TGG | + | chr4_4:61420032-61420051 | None:intergenic | 40.0% |
| !! | CTGTGGTTTTGCTTCAAGAT+TGG | - | chr4_4:61420186-61420205 | Msa0692750:CDS | 40.0% |
| AAATCTCCTGATGATCCTCA+AGG | - | chr4_4:61420243-61420262 | Msa0692750:intron | 40.0% | |
| AAGAAGATGCAAGGTGGTAG+CGG | - | chr4_4:61417294-61417313 | Msa0692750:three_prime_UTR | 45.0% | |
| CTTCAGTCAAAGCAATGACC+TGG | + | chr4_4:61417937-61417956 | None:intergenic | 45.0% | |
| AGTTTATTGTGGGTGGGTGT+TGG | + | chr4_4:61418010-61418029 | None:intergenic | 45.0% | |
| AACACCCACCCACAATAAAC+TGG | - | chr4_4:61418009-61418028 | Msa0692750:intron | 45.0% | |
| GATGGTCAAAGTGGGTATGA+AGG | + | chr4_4:61418123-61418142 | None:intergenic | 45.0% | |
| !! | ATTTGGTGTGTAAGCCTCGA+CGG | + | chr4_4:61418215-61418234 | None:intergenic | 45.0% |
| AGGACTAGGATTGCATCAAG+TGG | + | chr4_4:61418298-61418317 | None:intergenic | 45.0% | |
| GGAATCACTTTATCCTAGGG+AGG | - | chr4_4:61418515-61418534 | Msa0692750:CDS | 45.0% | |
| CATAGTAGCACGCAAAGTAC+AGG | + | chr4_4:61418568-61418587 | None:intergenic | 45.0% | |
| CATTCTGTTGATGCTGAGTG+AGG | + | chr4_4:61418678-61418697 | None:intergenic | 45.0% | |
| GTGTTCTGTACTCCTTAGAG+AGG | - | chr4_4:61418843-61418862 | Msa0692750:intron | 45.0% | |
| AGGTAGATCCCGCTAACATA+AGG | - | chr4_4:61419042-61419061 | Msa0692750:intron | 45.0% | |
| AGTTGCTGAAGCTACAAAGC+AGG | - | chr4_4:61419109-61419128 | Msa0692750:intron | 45.0% | |
| CAAACGGAAAATTGCGCAAG+CGG | - | chr4_4:61419136-61419155 | Msa0692750:intron | 45.0% | |
| !! | TTGCTTTTCCCTTGGTTGTC+TGG | + | chr4_4:61419570-61419589 | None:intergenic | 45.0% |
| GCAATGATACTTCTCTCCTG+TGG | + | chr4_4:61419847-61419866 | None:intergenic | 45.0% | |
| CCCTTGAATCGGTTGTAAGT+TGG | - | chr4_4:61419981-61420000 | Msa0692750:intron | 45.0% | |
| !! | AGATTGGTTTCTTCTCGGGA+AGG | - | chr4_4:61420202-61420221 | Msa0692750:intron | 45.0% |
| TCCTGATGATCCTCAAGGAA+AGG | - | chr4_4:61420248-61420267 | Msa0692750:intron | 45.0% | |
| ACCTTTCCTTGAGGATCATC+AGG | + | chr4_4:61420252-61420271 | None:intergenic | 45.0% | |
| GATGATCCTCAAGGAAAGGT+TGG | - | chr4_4:61420252-61420271 | Msa0692750:intron | 45.0% | |
| CATACAATCGAAGGGCTAAC+TGG | + | chr4_4:61420378-61420397 | None:intergenic | 45.0% | |
| GCTCAAACCAATCACTGTAG+AGG | - | chr4_4:61420408-61420427 | Msa0692750:five_prime_UTR | 45.0% | |
| CAAACAGCCTCTACAGTGAT+TGG | + | chr4_4:61420418-61420437 | None:intergenic | 45.0% | |
| !! | ATAATAATAATAATAATAGT+TGG | + | chr4_4:61417869-61417888 | None:intergenic | 5.0% |
| AGAAGATGCAAGGTGGTAGC+GGG | - | chr4_4:61417295-61417314 | Msa0692750:three_prime_UTR | 50.0% | |
| !! | TCTATCTCATGGCGGACATC+AGG | + | chr4_4:61417758-61417777 | None:intergenic | 50.0% |
| GTTGGAGATTGGGTGGAAGT+GGG | + | chr4_4:61417992-61418011 | None:intergenic | 50.0% | |
| TGTTGGAGATTGGGTGGAAG+TGG | + | chr4_4:61417993-61418012 | None:intergenic | 50.0% | |
| GTCGAGGCTTACACACCAAA+TGG | - | chr4_4:61418214-61418233 | Msa0692750:intron | 50.0% | |
| GATGTAATGCAGGGCTCCAT+AGG | + | chr4_4:61418318-61418337 | None:intergenic | 50.0% | |
| ACTTGGAAGTAAGCCTCCCT+AGG | + | chr4_4:61418531-61418550 | None:intergenic | 50.0% | |
| ACTCGCTCAGCTTCAACCAA+AGG | + | chr4_4:61419092-61419111 | None:intergenic | 50.0% | |
| GGCTCTATACGAAGCTTTGC+AGG | + | chr4_4:61419191-61419210 | None:intergenic | 50.0% | |
| CACAACTCACCACATCCTCA+GGG | + | chr4_4:61419220-61419239 | None:intergenic | 50.0% | |
| ACACAACTCACCACATCCTC+AGG | + | chr4_4:61419221-61419240 | None:intergenic | 50.0% | |
| CAGCAGTTCCAGACAACCAA+GGG | - | chr4_4:61419559-61419578 | Msa0692750:intron | 50.0% | |
| GTCACACCAACCTTTCCTTG+AGG | + | chr4_4:61420261-61420280 | None:intergenic | 50.0% | |
| !! | CAAGGAAAGGTTGGTGTGAC+TGG | - | chr4_4:61420261-61420280 | Msa0692750:intron | 50.0% |
| !! | AAGGTTGGTGTGACTGGAAG+TGG | - | chr4_4:61420267-61420286 | Msa0692750:intron | 50.0% |
| !! | AGGTTGGTGTGACTGGAAGT+GGG | - | chr4_4:61420268-61420287 | Msa0692750:intron | 50.0% |
| CATGGAAAGAGAGCTCTCCG+AGG | - | chr4_4:61417521-61417540 | Msa0692750:intron | 55.0% | |
| !! | GTGGGTGGGTGTTGGAGATT+GGG | + | chr4_4:61418002-61418021 | None:intergenic | 55.0% |
| !! | TGTGGGTGGGTGTTGGAGAT+TGG | + | chr4_4:61418003-61418022 | None:intergenic | 55.0% |
| TCCTGTTGGCACCAGAGTTC+AGG | - | chr4_4:61418153-61418172 | Msa0692750:CDS | 55.0% | |
| GTGGTATGATGCAACCGTCG+AGG | - | chr4_4:61418198-61418217 | Msa0692750:CDS | 55.0% | |
| ATGCAGGGCTCCATAGGACT+AGG | + | chr4_4:61418312-61418331 | None:intergenic | 55.0% | |
| TATAGAGCCCGATGACCCTG+AGG | - | chr4_4:61419202-61419221 | Msa0692750:intron | 55.0% | |
| ACCACATCCTCAGGGTCATC+GGG | + | chr4_4:61419212-61419231 | None:intergenic | 55.0% | |
| CACCACATCCTCAGGGTCAT+CGG | + | chr4_4:61419213-61419232 | None:intergenic | 55.0% | |
| GCAGCAGTTCCAGACAACCA+AGG | - | chr4_4:61419558-61419577 | Msa0692750:intron | 55.0% | |
| GGTGTGACTGGAAGTGGGAA+AGG | - | chr4_4:61420273-61420292 | Msa0692750:intron | 55.0% | |
| !! | CTCATGGCGGACATCAGGAC+AGG | + | chr4_4:61417753-61417772 | None:intergenic | 60.0% |
| !! | GGTGGGTGTTGGAGATTGGG+TGG | + | chr4_4:61417999-61418018 | None:intergenic | 60.0% |
| ! | GCCTGAACTCTGGTGCCAAC+AGG | + | chr4_4:61418157-61418176 | None:intergenic | 60.0% |
| GGCGGACATCAGGACAGGAC+AGG | + | chr4_4:61417748-61417767 | None:intergenic | 65.0% | |
| GCCCGATGACCCTGAGGATG+TGG | - | chr4_4:61419208-61419227 | Msa0692750:intron | 65.0% | |
| !! | GCAAGGTGGTAGCGGGCGTG+AGG | - | chr4_4:61417302-61417321 | Msa0692750:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 61417141 | 61420546 | 61417141 | ID=Msa0692750;Name=Msa0692750 |
| chr4_4 | mRNA | 61417141 | 61420546 | 61417141 | ID=Msa0692750-mRNA-1;Parent=Msa0692750;Name=Msa0692750-mRNA-1;_AED=0.16;_eAED=0.16;_QI=159|1|1|1|1|1|7|181|297 |
| chr4_4 | exon | 61417141 | 61417483 | 61417141 | ID=Msa0692750-mRNA-1:exon:17010;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61418093 | 61418221 | 61418093 | ID=Msa0692750-mRNA-1:exon:17009;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61418458 | 61418643 | 61418458 | ID=Msa0692750-mRNA-1:exon:17008;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61419411 | 61419569 | 61419411 | ID=Msa0692750-mRNA-1:exon:17007;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61419657 | 61419749 | 61419657 | ID=Msa0692750-mRNA-1:exon:17006;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61420145 | 61420213 | 61420145 | ID=Msa0692750-mRNA-1:exon:17005;Parent=Msa0692750-mRNA-1 |
| chr4_4 | exon | 61420292 | 61420546 | 61420292 | ID=Msa0692750-mRNA-1:exon:17004;Parent=Msa0692750-mRNA-1 |
| chr4_4 | five_prime_UTR | 61420388 | 61420546 | 61420388 | ID=Msa0692750-mRNA-1:five_prime_utr;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61420292 | 61420387 | 61420292 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61420145 | 61420213 | 61420145 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61419657 | 61419749 | 61419657 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61419411 | 61419569 | 61419411 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61418458 | 61418643 | 61418458 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61418093 | 61418221 | 61418093 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | CDS | 61417322 | 61417483 | 61417322 | ID=Msa0692750-mRNA-1:cds;Parent=Msa0692750-mRNA-1 |
| chr4_4 | three_prime_UTR | 61417141 | 61417321 | 61417141 | ID=Msa0692750-mRNA-1:three_prime_utr;Parent=Msa0692750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
