Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414010 | sp|P92965|RS40_ARATH | 75.163 | 153 | 37 | 1 | 1 | 152 | 1 | 153 | 3.68e-76 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414010 | G7IAR3 | 99.342 | 152 | 1 | 0 | 1 | 152 | 1 | 152 | 1.85e-105 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1414010 | Msa1463030 | 0.801900 | 7.238553e-49 | -8.615850e-47 |
| Msa1128270 | Msa1414010 | 0.815568 | 8.650293e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414010 | MtrunA17_Chr8g0350691 | 69.536 | 151 | 46 | 0 | 1 | 151 | 1 | 151 | 8.58e-77 | 230 |
| Msa1414010 | MtrunA17_Chr1g0203801 | 99.099 | 111 | 1 | 0 | 42 | 152 | 1 | 111 | 8.79e-76 | 229 |
| Msa1414010 | MtrunA17_Chr8g0346471 | 62.252 | 151 | 52 | 1 | 1 | 151 | 1 | 146 | 2.02e-65 | 199 |
| Msa1414010 | MtrunA17_Chr1g0203811 | 92.308 | 39 | 3 | 0 | 1 | 39 | 1 | 39 | 5.86e-21 | 80.1 |
| Msa1414010 | MtrunA17_Chr7g0269331 | 40.741 | 81 | 41 | 2 | 2 | 77 | 7 | 85 | 4.17e-12 | 62.4 |
| Msa1414010 | MtrunA17_Chr3g0116631 | 29.697 | 165 | 91 | 7 | 4 | 149 | 111 | 269 | 1.10e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414010 | AT4G25500.1 | 75.163 | 153 | 37 | 1 | 1 | 152 | 1 | 153 | 3.74e-77 | 233 |
| Msa1414010 | AT4G25500.4 | 75.163 | 153 | 37 | 1 | 1 | 152 | 1 | 153 | 3.74e-77 | 233 |
| Msa1414010 | AT5G52040.1 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 1.20e-73 | 224 |
| Msa1414010 | AT5G52040.2 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 1.30e-73 | 224 |
| Msa1414010 | AT3G61860.1 | 59.091 | 154 | 54 | 2 | 1 | 151 | 1 | 148 | 6.76e-63 | 194 |
| Msa1414010 | AT2G46610.1 | 56.579 | 152 | 65 | 1 | 1 | 152 | 1 | 151 | 3.55e-59 | 184 |
| Msa1414010 | AT4G25500.6 | 73.729 | 118 | 30 | 1 | 36 | 152 | 3 | 120 | 2.94e-53 | 171 |
| Msa1414010 | AT4G25500.3 | 73.729 | 118 | 30 | 1 | 36 | 152 | 3 | 120 | 2.94e-53 | 171 |
| Msa1414010 | AT4G25500.7 | 73.109 | 119 | 31 | 1 | 35 | 152 | 14 | 132 | 7.90e-53 | 170 |
| Msa1414010 | AT4G25500.2 | 73.109 | 119 | 31 | 1 | 35 | 152 | 14 | 132 | 7.90e-53 | 170 |
| Msa1414010 | AT4G25500.5 | 73.109 | 119 | 31 | 1 | 35 | 152 | 14 | 132 | 7.90e-53 | 170 |
| Msa1414010 | AT4G25500.8 | 73.109 | 119 | 31 | 1 | 35 | 152 | 14 | 132 | 7.90e-53 | 170 |
| Msa1414010 | AT5G52040.6 | 73.504 | 117 | 31 | 0 | 36 | 152 | 3 | 119 | 4.00e-49 | 160 |
| Msa1414010 | AT5G52040.4 | 73.504 | 117 | 31 | 0 | 36 | 152 | 3 | 119 | 4.19e-49 | 160 |
| Msa1414010 | AT5G52040.3 | 73.276 | 116 | 31 | 0 | 37 | 152 | 10 | 125 | 6.84e-48 | 157 |
| Msa1414010 | AT5G52040.5 | 72.973 | 111 | 30 | 0 | 42 | 152 | 1 | 111 | 4.70e-44 | 147 |
| Msa1414010 | AT5G52040.7 | 72.973 | 111 | 30 | 0 | 42 | 152 | 1 | 111 | 4.70e-44 | 147 |
| Msa1414010 | AT2G46610.2 | 54.918 | 122 | 54 | 1 | 31 | 152 | 5 | 125 | 1.11e-41 | 139 |
| Msa1414010 | AT2G46610.3 | 56.780 | 118 | 50 | 1 | 35 | 152 | 15 | 131 | 2.19e-41 | 138 |
| Msa1414010 | AT2G46610.4 | 56.780 | 118 | 50 | 1 | 35 | 152 | 15 | 131 | 2.19e-41 | 138 |
| Msa1414010 | AT1G02840.1 | 40.000 | 80 | 41 | 2 | 2 | 76 | 7 | 84 | 6.09e-11 | 59.3 |
| Msa1414010 | AT1G02840.4 | 40.000 | 80 | 41 | 2 | 2 | 76 | 7 | 84 | 8.90e-11 | 58.5 |
| Msa1414010 | AT1G02840.5 | 40.000 | 80 | 41 | 2 | 2 | 76 | 7 | 84 | 8.90e-11 | 58.5 |
| Msa1414010 | AT1G02840.3 | 40.000 | 80 | 41 | 2 | 2 | 76 | 7 | 84 | 8.90e-11 | 58.5 |
| Msa1414010 | AT1G02840.2 | 40.000 | 80 | 41 | 2 | 2 | 76 | 7 | 84 | 9.19e-11 | 58.9 |
Find 43 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATACGGGAAGGTTGAT+AGG | 0.305006 | tig0024078:+81214 | Msa1414010:CDS |
| ATCAAAATTAATTACAAATA+AGG | 0.319172 | tig0024078:-82985 | None:intergenic |
| ATTACAAATAAGGTCTTTGA+TGG | 0.332349 | tig0024078:-82975 | None:intergenic |
| CCTCTCCAAGTCCCTTGTTC+TGG | 0.351881 | tig0024078:-83018 | None:intergenic |
| CCAAGTCCCTTGTTCTGGTC+TGG | 0.405261 | tig0024078:-83013 | None:intergenic |
| CACTGGAAGCTACAAATAAC+AGG | 0.410310 | tig0024078:+83132 | Msa1414010:CDS |
| TCCTACCGAACTCTCTTTCA+AGG | 0.416355 | tig0024078:+80188 | Msa1414010:five_prime_UTR |
| GCTCTTGATCGGATAGAATA+TGG | 0.419990 | tig0024078:+82761 | Msa1414010:CDS |
| AGAAATTCACAGATATTTCT+CGG | 0.424509 | tig0024078:-80134 | None:intergenic |
| TCCTCTTCTCTTCTCCGCCT+AGG | 0.440739 | tig0024078:+80163 | Msa1414010:five_prime_UTR |
| GAGAGGCACTTTGAGCCATA+TGG | 0.442655 | tig0024078:+83035 | Msa1414010:CDS |
| GCCGCTCCAGCTCAGACTCC+CGG | 0.463915 | tig0024078:-81185 | None:intergenic |
| GGCGCAGACTTCGTGTTGAA+TGG | 0.466980 | tig0024078:+82792 | Msa1414010:CDS |
| CCTCTTCTCTTCTCCGCCTA+GGG | 0.469961 | tig0024078:+80164 | Msa1414010:five_prime_UTR |
| CGGATAGAATATGGTCGAAA+GGG | 0.477302 | tig0024078:+82770 | Msa1414010:CDS |
| GGTTGATAGGGTGGATATGA+AGG | 0.486340 | tig0024078:+81227 | Msa1414010:CDS |
| TGATTGCCGGGAGTCTGAGC+TGG | 0.497721 | tig0024078:+81179 | Msa1414010:CDS |
| GCGAACCTTGAAAGAGAGTT+CGG | 0.499337 | tig0024078:-80193 | None:intergenic |
| GAAATTCACAGATATTTCTC+GGG | 0.505517 | tig0024078:-80133 | None:intergenic |
| CTGCAATCCGTGCTCTTGAT+CGG | 0.509240 | tig0024078:+82750 | Msa1414010:CDS |
| AGATGATGCTTGCAAAGCAC+TGG | 0.510011 | tig0024078:+83115 | Msa1414010:CDS |
| CCAGACCAGAACAAGGGACT+TGG | 0.522617 | tig0024078:+83013 | Msa1414010:CDS |
| ACACTGACTATCTTACCATA+TGG | 0.537150 | tig0024078:-83050 | None:intergenic |
| GATAGGGTGGATATGAAGGC+TGG | 0.541996 | tig0024078:+81231 | Msa1414010:CDS |
| GAGAGTTCGGTAGGAACCCT+AGG | 0.542745 | tig0024078:-80180 | None:intergenic |
| AGCAAGAACGTGGTGTCAGA+AGG | 0.561862 | tig0024078:+82913 | Msa1414010:intron |
| AAGATACGGGAAGGTTGATA+GGG | 0.564104 | tig0024078:+81215 | Msa1414010:CDS |
| CCCTAGGCGGAGAAGAGAAG+AGG | 0.591775 | tig0024078:-80164 | None:intergenic |
| TCGGATAGAATATGGTCGAA+AGG | 0.596606 | tig0024078:+82769 | Msa1414010:CDS |
| ATACGGGAAGGTTGATAGGG+TGG | 0.598239 | tig0024078:+81218 | Msa1414010:CDS |
| GCCGGGAGTCTGAGCTGGAG+CGG | 0.602747 | tig0024078:+81184 | Msa1414010:CDS |
| ATTCTATCCGATCAAGAGCA+CGG | 0.622095 | tig0024078:-82757 | None:intergenic |
| GGCGGAGAAGAGAAGAGGAG+AGG | 0.622524 | tig0024078:-80159 | None:intergenic |
| CCAGAACAAGGGACTTGGAG+AGG | 0.629967 | tig0024078:+83018 | Msa1414010:CDS |
| ATACATACCAGACCAGAACA+AGG | 0.639717 | tig0024078:+83006 | Msa1414010:CDS |
| GGATAGAATATGGTCGAAAG+GGG | 0.652114 | tig0024078:+82771 | Msa1414010:CDS |
| ACCTTGAAAGAGAGTTCGGT+AGG | 0.656521 | tig0024078:-80189 | None:intergenic |
| ATGGTAAGATAGTCAGTGTG+AGG | 0.659530 | tig0024078:+83054 | Msa1414010:CDS |
| GGAAGATGAGAGAGATGCTG+AGG | 0.696793 | tig0024078:+82727 | Msa1414010:CDS |
| TACATACCAGACCAGAACAA+GGG | 0.706865 | tig0024078:+83007 | Msa1414010:CDS |
| ATTGTGCTGCAGCAAGAACG+TGG | 0.710392 | tig0024078:+82903 | Msa1414010:intron |
| ACTTCGTGTTGAATGGACGA+AGG | 0.727930 | tig0024078:+82799 | Msa1414010:CDS |
| AGTTCGGTAGGAACCCTAGG+CGG | 0.737473 | tig0024078:-80177 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGGAAATTAAATAAAATTT+TGG | - | tig0024078:82536-82555 | None:intergenic | 10.0% |
| !! | ATCAAAATTAATTACAAATA+AGG | - | tig0024078:82988-83007 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTACAAAGTTAAA+TGG | - | tig0024078:80946-80965 | None:intergenic | 15.0% |
| !!! | TTTGTTTGTACATTTTAAAA+TGG | + | tig0024078:81296-81315 | Msa1414010:intron | 15.0% |
| !!! | ATAAAGTTGAGATTATTTTT+TGG | + | tig0024078:82675-82694 | Msa1414010:intron | 15.0% |
| !!! | AAGAGATTTTTGATTGAATT+GGG | - | tig0024078:80235-80254 | None:intergenic | 20.0% |
| !! | AACAACTATAAAAATCAACA+GGG | - | tig0024078:80340-80359 | None:intergenic | 20.0% |
| !! | TAACAACTATAAAAATCAAC+AGG | - | tig0024078:80341-80360 | None:intergenic | 20.0% |
| !!! | AGTTTGAATGTTTGATAATT+AGG | + | tig0024078:80557-80576 | Msa1414010:intron | 20.0% |
| !!! | GTTTGAATGTTTGATAATTA+GGG | + | tig0024078:80558-80577 | Msa1414010:intron | 20.0% |
| !!! | AATGATTTTTCTTAGTTTGA+TGG | + | tig0024078:80818-80837 | Msa1414010:intron | 20.0% |
| !!! | TTATCTAGTCTTATAAGTTT+TGG | + | tig0024078:80872-80891 | Msa1414010:intron | 20.0% |
| !!! | TATCTAGTCTTATAAGTTTT+GGG | + | tig0024078:80873-80892 | Msa1414010:intron | 20.0% |
| !!! | TTTTAAAATGGATGCTTAAA+AGG | + | tig0024078:81308-81327 | Msa1414010:intron | 20.0% |
| !! | TATATAATCTAGTCAATTCA+AGG | - | tig0024078:81363-81382 | None:intergenic | 20.0% |
| !! | AACTACTGAATTCAATAATA+TGG | - | tig0024078:81510-81529 | None:intergenic | 20.0% |
| !!! | TTTATTATTTTAAACAGCAG+TGG | - | tig0024078:81623-81642 | None:intergenic | 20.0% |
| !! | GTGTTTATTTATCTTATACA+TGG | - | tig0024078:81763-81782 | None:intergenic | 20.0% |
| !! | AAACACAAGTTATAAATTAG+TGG | + | tig0024078:81777-81796 | Msa1414010:intron | 20.0% |
| !! | AACACAAGTTATAAATTAGT+GGG | + | tig0024078:81778-81797 | Msa1414010:intron | 20.0% |
| !!! | ATTAGTTTATAGAAATGAAG+AGG | + | tig0024078:82506-82525 | Msa1414010:intron | 20.0% |
| !!! | TGATTATGTTTTATCTTCAT+TGG | + | tig0024078:82876-82895 | Msa1414010:intron | 20.0% |
| !!! | GATTATGTTTTATCTTCATT+GGG | + | tig0024078:82877-82896 | Msa1414010:intron | 20.0% |
| ! | AGAAATTCACAGATATTTCT+CGG | - | tig0024078:80137-80156 | None:intergenic | 25.0% |
| !!! | CAAGAGATTTTTGATTGAAT+TGG | - | tig0024078:80236-80255 | None:intergenic | 25.0% |
| ! | AAGTTATAAATCTCAGATCT+AGG | - | tig0024078:80310-80329 | None:intergenic | 25.0% |
| !! | TTTCATTTAGAACGTGTAAT+TGG | + | tig0024078:80371-80390 | Msa1414010:intron | 25.0% |
| !!! | TTTTCTTAGTTTGATGGTTA+AGG | + | tig0024078:80824-80843 | Msa1414010:intron | 25.0% |
| !! | AGAACTTATGAAAATGCTTT+TGG | + | tig0024078:80908-80927 | Msa1414010:intron | 25.0% |
| ! | TTTATTCTATCTTGTGCTAT+AGG | + | tig0024078:80974-80993 | Msa1414010:intron | 25.0% |
| !!! | AAAATGAAAGCTATTTTCTG+CGG | + | tig0024078:81144-81163 | Msa1414010:exon | 25.0% |
| !! | GAAATTTTGAATATGATTGC+CGG | + | tig0024078:81166-81185 | Msa1414010:CDS | 25.0% |
| !! | AAATTTTGAATATGATTGCC+GGG | + | tig0024078:81167-81186 | Msa1414010:CDS | 25.0% |
| !! | CAACTATAAACTTTTCTGTT+AGG | - | tig0024078:81390-81409 | None:intergenic | 25.0% |
| !!! | AGAAACAGAGTTTTTTTACT+TGG | + | tig0024078:81462-81481 | Msa1414010:intron | 25.0% |
| !!! | GAAACAGAGTTTTTTTACTT+GGG | + | tig0024078:81463-81482 | Msa1414010:intron | 25.0% |
| !!! | AAACAGAGTTTTTTTACTTG+GGG | + | tig0024078:81464-81483 | Msa1414010:intron | 25.0% |
| ! | AATAAATGGAGGTAGATAAA+TGG | - | tig0024078:81736-81755 | None:intergenic | 25.0% |
| ! | TTATACATGGACAGAATAAA+TGG | - | tig0024078:81750-81769 | None:intergenic | 25.0% |
| ! | ATGCAAATGATAAATTAGTG+GGG | - | tig0024078:81823-81842 | None:intergenic | 25.0% |
| ! | GATGCAAATGATAAATTAGT+GGG | - | tig0024078:81824-81843 | None:intergenic | 25.0% |
| ! | AGATGCAAATGATAAATTAG+TGG | - | tig0024078:81825-81844 | None:intergenic | 25.0% |
| ! | CATCTATCTCTATCATAAAT+GGG | + | tig0024078:81840-81859 | Msa1414010:intron | 25.0% |
| ! | AAATAAAATGTTGAGTATGG+GGG | - | tig0024078:82148-82167 | None:intergenic | 25.0% |
| ! | CAAATAAAATGTTGAGTATG+GGG | - | tig0024078:82149-82168 | None:intergenic | 25.0% |
| ! | CCAAATAAAATGTTGAGTAT+GGG | - | tig0024078:82150-82169 | None:intergenic | 25.0% |
| ! | TTATTTATCATGTCCAAAAG+TGG | - | tig0024078:82346-82365 | None:intergenic | 25.0% |
| !!! | AGGATTTGCTTTTATCTATA+TGG | + | tig0024078:82706-82725 | Msa1414010:intron | 25.0% |
| ! | ATTACAAATAAGGTCTTTGA+TGG | - | tig0024078:82978-82997 | None:intergenic | 25.0% |
| GAAATTCACAGATATTTCTC+GGG | - | tig0024078:80136-80155 | None:intergenic | 30.0% | |
| ! | AAATCTCAGATCTAGGTTTT+TGG | - | tig0024078:80303-80322 | None:intergenic | 30.0% |
| AAACATGAATTTAAGCTTCG+AGG | + | tig0024078:80475-80494 | Msa1414010:intron | 30.0% | |
| AACATGAATTTAAGCTTCGA+GGG | + | tig0024078:80476-80495 | Msa1414010:intron | 30.0% | |
| ACCTATTTGAGCTTATTTAG+TGG | + | tig0024078:80594-80613 | Msa1414010:intron | 30.0% | |
| ACCACTAAATAAGCTCAAAT+AGG | - | tig0024078:80598-80617 | None:intergenic | 30.0% | |
| ATACATGTATTGAAGCTTCA+AGG | + | tig0024078:80760-80779 | Msa1414010:intron | 30.0% | |
| TACATGTATTGAAGCTTCAA+GGG | + | tig0024078:80761-80780 | Msa1414010:intron | 30.0% | |
| !! | AATAAGTTGGTTATCCAAAC+AGG | + | tig0024078:81040-81059 | Msa1414010:intron | 30.0% |
| !! | ATAAGTTGGTTATCCAAACA+GGG | + | tig0024078:81041-81060 | Msa1414010:intron | 30.0% |
| TAACTACATAAATCCCTGTT+TGG | - | tig0024078:81057-81076 | None:intergenic | 30.0% | |
| TCAAAAATAAACACCAAGCT+AGG | - | tig0024078:81100-81119 | None:intergenic | 30.0% | |
| ! | TATATGACTTGCATTCTCTA+GGG | + | tig0024078:81540-81559 | Msa1414010:intron | 30.0% |
| GTGGGACTTAATTTAATAAG+TGG | + | tig0024078:81796-81815 | Msa1414010:intron | 30.0% | |
| GCATCTATCTCTATCATAAA+TGG | + | tig0024078:81839-81858 | Msa1414010:intron | 30.0% | |
| TATCATAAATGGGCGATAAA+TGG | + | tig0024078:81850-81869 | Msa1414010:intron | 30.0% | |
| !! | ATAAATGGTGGGTAGATAAA+TGG | + | tig0024078:81865-81884 | Msa1414010:intron | 30.0% |
| ATGTGAAAAACCATAGAGAT+AGG | - | tig0024078:81905-81924 | None:intergenic | 30.0% | |
| TGCAATGTATCATAGAAGAT+TGG | + | tig0024078:82017-82036 | Msa1414010:intron | 30.0% | |
| ! | CCCATACTCAACATTTTATT+TGG | + | tig0024078:82147-82166 | Msa1414010:intron | 30.0% |
| GCCAAATAAAATGTTGAGTA+TGG | - | tig0024078:82151-82170 | None:intergenic | 30.0% | |
| ! | ACCACTTTGTTTATTATCCA+AGG | + | tig0024078:82459-82478 | Msa1414010:intron | 30.0% |
| ACCTTGGATAATAAACAAAG+TGG | - | tig0024078:82463-82482 | None:intergenic | 30.0% | |
| CAAACACAATACTAACAACT+TGG | - | tig0024078:82555-82574 | None:intergenic | 30.0% | |
| ! | AAGCTATAATGTTGTTGTTG+TGG | + | tig0024078:82852-82871 | Msa1414010:intron | 30.0% |
| ACATGAATTTAAGCTTCGAG+GGG | + | tig0024078:80477-80496 | Msa1414010:intron | 35.0% | |
| ! | TTTGATAATTAGGGTCCGTT+TGG | + | tig0024078:80567-80586 | Msa1414010:intron | 35.0% |
| CTCAAATAGGTCAATCCAAA+CGG | - | tig0024078:80585-80604 | None:intergenic | 35.0% | |
| ! | TTTTGTCTGACTGTTCTGTT+TGG | + | tig0024078:80623-80642 | Msa1414010:intron | 35.0% |
| TTTGTCTGACTGTTCTGTTT+GGG | + | tig0024078:80624-80643 | Msa1414010:intron | 35.0% | |
| ! | AGAACTTATGGAAACGCTTT+TGG | + | tig0024078:80647-80666 | Msa1414010:intron | 35.0% |
| ACATGTATTGAAGCTTCAAG+GGG | + | tig0024078:80762-80781 | Msa1414010:intron | 35.0% | |
| !!! | TAAGTTTTGGGAGACTGTTT+CGG | + | tig0024078:80885-80904 | Msa1414010:intron | 35.0% |
| GCTATAAGCTGCAAATAAGT+TGG | + | tig0024078:81027-81046 | Msa1414010:intron | 35.0% | |
| ! | CTTTCATTTTCACTGAACAC+AGG | - | tig0024078:81134-81153 | None:intergenic | 35.0% |
| !!! | GTTTTTTTACTTGGGGAATG+TGG | + | tig0024078:81471-81490 | Msa1414010:intron | 35.0% |
| ! | CTATATGACTTGCATTCTCT+AGG | + | tig0024078:81539-81558 | Msa1414010:intron | 35.0% |
| GTAGATAAATGGACCAAATC+CGG | - | tig0024078:81725-81744 | None:intergenic | 35.0% | |
| TACATGGACAGAATAAATGG+AGG | - | tig0024078:81747-81766 | None:intergenic | 35.0% | |
| ATAAATGGGCGATAAATGGT+GGG | + | tig0024078:81854-81873 | Msa1414010:intron | 35.0% | |
| AAACCATAGAGATAGGAGTT+CGG | - | tig0024078:81898-81917 | None:intergenic | 35.0% | |
| TCATTCAATTTGATCCGCAA+TGG | + | tig0024078:82261-82280 | Msa1414010:intron | 35.0% | |
| ! | CAAAAGGCACGAAAATTGAA+AGG | - | tig0024078:82318-82337 | None:intergenic | 35.0% |
| ATAAATAAACCTCACAGCAG+AGG | + | tig0024078:82358-82377 | Msa1414010:intron | 35.0% | |
| ! | GAACAAGAATCCAAAAGTGT+AGG | - | tig0024078:82434-82453 | None:intergenic | 35.0% |
| ACAGAATTAGTAACAGACCT+TGG | - | tig0024078:82479-82498 | None:intergenic | 35.0% | |
| AGGTCTGTTACTAATTCTGT+TGG | + | tig0024078:82479-82498 | Msa1414010:intron | 35.0% | |
| GAAACACTTCACTTGTAATG+TGG | - | tig0024078:82600-82619 | None:intergenic | 35.0% | |
| ! | CAAGTGAAGTGTTTCTTGAT+TGG | + | tig0024078:82605-82624 | Msa1414010:intron | 35.0% |
| !!! | ATTATTTTTTGGTGCTGTGC+AGG | + | tig0024078:82686-82705 | Msa1414010:intron | 35.0% |
| TTATAGCTTCAGCATTCTAG+TGG | - | tig0024078:82841-82860 | None:intergenic | 35.0% | |
| ! | GCATTAGCTGAAGATCTTTT+TGG | - | tig0024078:82951-82970 | None:intergenic | 35.0% |
| ! | ACACTGACTATCTTACCATA+TGG | - | tig0024078:83053-83072 | None:intergenic | 35.0% |
| GTTCTGTTTGGGAGAACTTA+TGG | + | tig0024078:80635-80654 | Msa1414010:intron | 40.0% | |
| !! | GAGCGGCTTTTTAGAAGATA+CGG | + | tig0024078:81201-81220 | Msa1414010:CDS | 40.0% |
| !! | AGCGGCTTTTTAGAAGATAC+GGG | + | tig0024078:81202-81221 | Msa1414010:CDS | 40.0% |
| !! | GCTTTTTAGAAGATACGGGA+AGG | + | tig0024078:81206-81225 | Msa1414010:CDS | 40.0% |
| !! | AAGATACGGGAAGGTTGATA+GGG | + | tig0024078:81215-81234 | Msa1414010:CDS | 40.0% |
| !!! | AGGCTGGTAAGGTTTTGTTT+TGG | + | tig0024078:81247-81266 | Msa1414010:intron | 40.0% |
| ! | TTTACACCAGATTGCTGACT+CGG | + | tig0024078:81419-81438 | Msa1414010:intron | 40.0% |
| ACTTTCAGGATGGTTTACAG+TGG | + | tig0024078:81563-81582 | Msa1414010:intron | 40.0% | |
| CTTTCAGGATGGTTTACAGT+GGG | + | tig0024078:81564-81583 | Msa1414010:intron | 40.0% | |
| CATAAATGGGCGATAAATGG+TGG | + | tig0024078:81853-81872 | Msa1414010:intron | 40.0% | |
| AACCATAGAGATAGGAGTTC+GGG | - | tig0024078:81897-81916 | None:intergenic | 40.0% | |
| ! | TTTAAGACATCCAGCAGTCA+CGG | + | tig0024078:81938-81957 | Msa1414010:intron | 40.0% |
| CAGAGTCTTTATCCGACATT+TGG | + | tig0024078:81969-81988 | Msa1414010:intron | 40.0% | |
| !! | CTCAACATTTTATTTGGCGC+AGG | + | tig0024078:82153-82172 | Msa1414010:intron | 40.0% |
| TCCATTTACTCCCAAGCTAA+TGG | + | tig0024078:82190-82209 | Msa1414010:intron | 40.0% | |
| ! | TCCATTAGCTTGGGAGTAAA+TGG | - | tig0024078:82194-82213 | None:intergenic | 40.0% |
| TTTACTCCCAAGCTAATGGA+TGG | + | tig0024078:82194-82213 | Msa1414010:intron | 40.0% | |
| ! | TTACTCCCAAGCTAATGGAT+GGG | + | tig0024078:82195-82214 | Msa1414010:intron | 40.0% |
| ! | AAAAGCCCATCCATTAGCTT+GGG | - | tig0024078:82203-82222 | None:intergenic | 40.0% |
| GATTCAAAGATGTGCATCAC+AGG | - | tig0024078:82243-82262 | None:intergenic | 40.0% | |
| TTGAAAGGCAAATGTGACTG+AGG | - | tig0024078:82303-82322 | None:intergenic | 40.0% | |
| TATCATGTCCAAAAGTGGAG+TGG | - | tig0024078:82341-82360 | None:intergenic | 40.0% | |
| ! | AAAAGTGTAGGTCTCATGGT+GGG | - | tig0024078:82422-82441 | None:intergenic | 40.0% |
| ! | ATCCAAAAGTGTAGGTCTCA+TGG | - | tig0024078:82426-82445 | None:intergenic | 40.0% |
| TTGTGTTTGTGCATAGCAGA+AGG | + | tig0024078:82566-82585 | Msa1414010:intron | 40.0% | |
| TGTGTTTGTGCATAGCAGAA+GGG | + | tig0024078:82567-82586 | Msa1414010:intron | 40.0% | |
| ATTCTATCCGATCAAGAGCA+CGG | - | tig0024078:82760-82779 | None:intergenic | 40.0% | |
| GCTCTTGATCGGATAGAATA+TGG | + | tig0024078:82761-82780 | Msa1414010:CDS | 40.0% | |
| TCGGATAGAATATGGTCGAA+AGG | + | tig0024078:82769-82788 | Msa1414010:CDS | 40.0% | |
| CGGATAGAATATGGTCGAAA+GGG | + | tig0024078:82770-82789 | Msa1414010:CDS | 40.0% | |
| GGATAGAATATGGTCGAAAG+GGG | + | tig0024078:82771-82790 | Msa1414010:CDS | 40.0% | |
| ATACATACCAGACCAGAACA+AGG | + | tig0024078:83006-83025 | Msa1414010:CDS | 40.0% | |
| TACATACCAGACCAGAACAA+GGG | + | tig0024078:83007-83026 | Msa1414010:CDS | 40.0% | |
| ATGGTAAGATAGTCAGTGTG+AGG | + | tig0024078:83054-83073 | Msa1414010:CDS | 40.0% | |
| TCCTACCGAACTCTCTTTCA+AGG | + | tig0024078:80188-80207 | Msa1414010:five_prime_UTR | 45.0% | |
| ACCTTGAAAGAGAGTTCGGT+AGG | - | tig0024078:80192-80211 | None:intergenic | 45.0% | |
| GCGAACCTTGAAAGAGAGTT+CGG | - | tig0024078:80196-80215 | None:intergenic | 45.0% | |
| CCAAGCTAGGCATACATACA+TGG | - | tig0024078:81087-81106 | None:intergenic | 45.0% | |
| CCATGTATGTATGCCTAGCT+TGG | + | tig0024078:81084-81103 | Msa1414010:intron | 45.0% | |
| ! | GAAGATACGGGAAGGTTGAT+AGG | + | tig0024078:81214-81233 | Msa1414010:CDS | 45.0% |
| !! | GGTTGATAGGGTGGATATGA+AGG | + | tig0024078:81227-81246 | Msa1414010:CDS | 45.0% |
| ! | TGCATTCTCTAGGGACTTTC+AGG | + | tig0024078:81549-81568 | Msa1414010:intron | 45.0% |
| ! | TTCTCTAGGGACTTTCAGGA+TGG | + | tig0024078:81553-81572 | Msa1414010:intron | 45.0% |
| AACAGCAGTGGCATGTTACA+AGG | - | tig0024078:81611-81630 | None:intergenic | 45.0% | |
| !! | GTACCTCTATCTCTAGAGTC+CGG | + | tig0024078:81703-81722 | Msa1414010:intron | 45.0% |
| ! | AATCCGGACTCTAGAGATAG+AGG | - | tig0024078:81709-81728 | None:intergenic | 45.0% |
| !! | CTATCTCTAGAGTCCGGATT+TGG | + | tig0024078:81709-81728 | Msa1414010:intron | 45.0% |
| AACCCGAACTCCTATCTCTA+TGG | + | tig0024078:81892-81911 | Msa1414010:intron | 45.0% | |
| GTGACTGCTGGATGTCTTAA+AGG | - | tig0024078:81939-81958 | None:intergenic | 45.0% | |
| TATACACCAAGGTCCAACTC+TGG | - | tig0024078:82054-82073 | None:intergenic | 45.0% | |
| ! | CAACAAGGTGCTATACACCA+AGG | - | tig0024078:82065-82084 | None:intergenic | 45.0% |
| AGCACCTTGTTGAGCATTTG+TGG | + | tig0024078:82073-82092 | Msa1414010:intron | 45.0% | |
| GCACCTTGTTGAGCATTTGT+GGG | + | tig0024078:82074-82093 | Msa1414010:intron | 45.0% | |
| CACCTTGTTGAGCATTTGTG+GGG | + | tig0024078:82075-82094 | Msa1414010:intron | 45.0% | |
| ACCTTGTTGAGCATTTGTGG+GGG | + | tig0024078:82076-82095 | Msa1414010:intron | 45.0% | |
| GAAAAGCCCATCCATTAGCT+TGG | - | tig0024078:82204-82223 | None:intergenic | 45.0% | |
| TACGTAGAGGTTTGCCATTG+CGG | - | tig0024078:82278-82297 | None:intergenic | 45.0% | |
| TGTGACTGAGGAATACGTAG+AGG | - | tig0024078:82291-82310 | None:intergenic | 45.0% | |
| TCCAAAAGTGGAGTGGCAAA+AGG | - | tig0024078:82334-82353 | None:intergenic | 45.0% | |
| ! | CAAAAGTGTAGGTCTCATGG+TGG | - | tig0024078:82423-82442 | None:intergenic | 45.0% |
| ! | CACCATGAGACCTACACTTT+TGG | + | tig0024078:82421-82440 | Msa1414010:intron | 45.0% |
| ACTTCGTGTTGAATGGACGA+AGG | + | tig0024078:82799-82818 | Msa1414010:CDS | 45.0% | |
| GTGTTGAATGGACGAAGGTA+AGG | + | tig0024078:82804-82823 | Msa1414010:intron | 45.0% | |
| AGATGATGCTTGCAAAGCAC+TGG | + | tig0024078:83115-83134 | Msa1414010:CDS | 45.0% | |
| !! | ATACGGGAAGGTTGATAGGG+TGG | + | tig0024078:81218-81237 | Msa1414010:CDS | 50.0% |
| GATAGGGTGGATATGAAGGC+TGG | + | tig0024078:81231-81250 | Msa1414010:CDS | 50.0% | |
| GGTGGATATGAAGGCTGGTA+AGG | + | tig0024078:81236-81255 | Msa1414010:intron | 50.0% | |
| CTACTTCCGAGTCAGCAATC+TGG | - | tig0024078:81428-81447 | None:intergenic | 50.0% | |
| AGGATGGTTTACAGTGGGAC+AGG | + | tig0024078:81569-81588 | Msa1414010:intron | 50.0% | |
| GGATGGTTTACAGTGGGACA+GGG | + | tig0024078:81570-81589 | Msa1414010:intron | 50.0% | |
| GGTGATTCAGTGACCAGAGT+TGG | + | tig0024078:82038-82057 | Msa1414010:intron | 50.0% | |
| CCTTGTTGAGCATTTGTGGG+GGG | + | tig0024078:82077-82096 | Msa1414010:intron | 50.0% | |
| TGTGCATCACAGGCAGGAAT+CGG | - | tig0024078:82233-82252 | None:intergenic | 50.0% | |
| CAAAGATGTGCATCACAGGC+AGG | - | tig0024078:82239-82258 | None:intergenic | 50.0% | |
| ! | GCCTTTTGCCACTCCACTTT+TGG | + | tig0024078:82330-82349 | Msa1414010:intron | 50.0% |
| AGCAGAGGCAGCTGAATGAA+TGG | + | tig0024078:82373-82392 | Msa1414010:intron | 50.0% | |
| GGCAGCTGAATGAATGGAGA+AGG | + | tig0024078:82379-82398 | Msa1414010:intron | 50.0% | |
| GGAAGATGAGAGAGATGCTG+AGG | + | tig0024078:82727-82746 | Msa1414010:CDS | 50.0% | |
| CTGCAATCCGTGCTCTTGAT+CGG | + | tig0024078:82750-82769 | Msa1414010:CDS | 50.0% | |
| ATTGTGCTGCAGCAAGAACG+TGG | + | tig0024078:82903-82922 | Msa1414010:intron | 50.0% | |
| ! | AGCAAGAACGTGGTGTCAGA+AGG | + | tig0024078:82913-82932 | Msa1414010:intron | 50.0% |
| ! | GATCTTTTTGGACGCTCAGC+AGG | - | tig0024078:82939-82958 | None:intergenic | 50.0% |
| !! | GAGAGGCACTTTGAGCCATA+TGG | + | tig0024078:83035-83054 | Msa1414010:CDS | 50.0% |
| TCCTCTTCTCTTCTCCGCCT+AGG | + | tig0024078:80163-80182 | Msa1414010:five_prime_UTR | 55.0% | |
| CCTCTTCTCTTCTCCGCCTA+GGG | + | tig0024078:80164-80183 | Msa1414010:five_prime_UTR | 55.0% | |
| AGTTCGGTAGGAACCCTAGG+CGG | - | tig0024078:80180-80199 | None:intergenic | 55.0% | |
| GAGAGTTCGGTAGGAACCCT+AGG | - | tig0024078:80183-80202 | None:intergenic | 55.0% | |
| ACATTGCAGTTGCTGACCCG+CGG | - | tig0024078:82005-82024 | None:intergenic | 55.0% | |
| CAGTGACCAGAGTTGGACCT+TGG | + | tig0024078:82045-82064 | Msa1414010:intron | 55.0% | |
| CCCCCCACAAATGCTCAACA+AGG | - | tig0024078:82080-82099 | None:intergenic | 55.0% | |
| ATTCAGCTGCCTCTGCTGTG+AGG | - | tig0024078:82370-82389 | None:intergenic | 55.0% | |
| !! | TAGGTCTCATGGTGGGTCAG+TGG | - | tig0024078:82415-82434 | None:intergenic | 55.0% |
| GGCGCAGACTTCGTGTTGAA+TGG | + | tig0024078:82792-82811 | Msa1414010:CDS | 55.0% | |
| CCAAGTCCCTTGTTCTGGTC+TGG | - | tig0024078:83016-83035 | None:intergenic | 55.0% | |
| CCAGACCAGAACAAGGGACT+TGG | + | tig0024078:83013-83032 | Msa1414010:CDS | 55.0% | |
| CCTCTCCAAGTCCCTTGTTC+TGG | - | tig0024078:83021-83040 | None:intergenic | 55.0% | |
| CCAGAACAAGGGACTTGGAG+AGG | + | tig0024078:83018-83037 | Msa1414010:CDS | 55.0% | |
| GGCGGAGAAGAGAAGAGGAG+AGG | - | tig0024078:80162-80181 | None:intergenic | 60.0% | |
| CCCTAGGCGGAGAAGAGAAG+AGG | - | tig0024078:80167-80186 | None:intergenic | 60.0% | |
| TGATTGCCGGGAGTCTGAGC+TGG | + | tig0024078:81179-81198 | Msa1414010:CDS | 60.0% | |
| TGATGCTGCACCGTGACTGC+TGG | - | tig0024078:81951-81970 | None:intergenic | 60.0% | |
| GGGAGGGTGGCTCCAAATGT+CGG | - | tig0024078:81984-82003 | None:intergenic | 60.0% | |
| CATTGCAGTTGCTGACCCGC+GGG | - | tig0024078:82004-82023 | None:intergenic | 60.0% | |
| ! | CATTTGGAGCCACCCTCCCG+CGG | + | tig0024078:81985-82004 | Msa1414010:intron | 65.0% |
| ! | ATTTGGAGCCACCCTCCCGC+GGG | + | tig0024078:81986-82005 | Msa1414010:intron | 65.0% |
| GCCGGGAGTCTGAGCTGGAG+CGG | + | tig0024078:81184-81203 | Msa1414010:CDS | 70.0% | |
| GCCGCTCCAGCTCAGACTCC+CGG | - | tig0024078:81188-81207 | None:intergenic | 70.0% | |
| GCAGTTGCTGACCCGCGGGA+GGG | - | tig0024078:82000-82019 | None:intergenic | 70.0% | |
| TGCAGTTGCTGACCCGCGGG+AGG | - | tig0024078:82001-82020 | None:intergenic | 70.0% | |
| GTTGCTGACCCGCGGGAGGG+TGG | - | tig0024078:81997-82016 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024078 | gene | 80122 | 83151 | 80122 | ID=Msa1414010;Name=Msa1414010 |
| tig0024078 | mRNA | 80122 | 83151 | 80122 | ID=Msa1414010-mRNA-1;Parent=Msa1414010;Name=Msa1414010-mRNA-1;_AED=0.35;_eAED=0.35;_QI=93|1|0.75|1|0.66|0.5|4|0|152 |
| tig0024078 | exon | 80122 | 80209 | 80122 | ID=Msa1414010-mRNA-1:exon:21504;Parent=Msa1414010-mRNA-1 |
| tig0024078 | exon | 81142 | 81252 | 81142 | ID=Msa1414010-mRNA-1:exon:21505;Parent=Msa1414010-mRNA-1 |
| tig0024078 | exon | 82708 | 82820 | 82708 | ID=Msa1414010-mRNA-1:exon:21506;Parent=Msa1414010-mRNA-1 |
| tig0024078 | exon | 82915 | 83151 | 82915 | ID=Msa1414010-mRNA-1:exon:21507;Parent=Msa1414010-mRNA-1 |
| tig0024078 | five_prime_UTR | 80122 | 80209 | 80122 | ID=Msa1414010-mRNA-1:five_prime_utr;Parent=Msa1414010-mRNA-1 |
| tig0024078 | five_prime_UTR | 81142 | 81146 | 81142 | ID=Msa1414010-mRNA-1:five_prime_utr;Parent=Msa1414010-mRNA-1 |
| tig0024078 | CDS | 81147 | 81252 | 81147 | ID=Msa1414010-mRNA-1:cds;Parent=Msa1414010-mRNA-1 |
| tig0024078 | CDS | 82708 | 82820 | 82708 | ID=Msa1414010-mRNA-1:cds;Parent=Msa1414010-mRNA-1 |
| tig0024078 | CDS | 82915 | 83151 | 82915 | ID=Msa1414010-mRNA-1:cds;Parent=Msa1414010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
