AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414550 MtrunA17_Chr5g0430431 65.909 44 15 0 2 45 217 260 2.67e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 130 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAACAAGTGGCATAAA+AGG 0.205385 tig0024137:-2837 None:intergenic
TCCCAAAACTGCTGGGAAAA+TGG 0.236911 tig0024137:+2613 Msa1414550:three_prime_UTR
ATTATTATTTCATGGATTAA+TGG 0.242852 tig0024137:+6815 Msa1414550:three_prime_UTR
CACCGTTAAAGATGTGTTAA+AGG 0.254468 tig0024137:+2947 Msa1414550:three_prime_UTR
CTGGTTGCCATTTGCTAATA+TGG 0.263256 tig0024137:+3133 Msa1414550:three_prime_UTR
CATGATATATTATTATTTCA+TGG 0.263360 tig0024137:+6807 Msa1414550:three_prime_UTR
CGGTTAGGGTTTCGGACCTT+AGG 0.268950 tig0024137:-2458 None:intergenic
CTTGCTTTGTGCTTTGGTTT+CGG 0.269175 tig0024137:-2132 None:intergenic
GGGGAATGCTGAGGAATCTT+TGG 0.279940 tig0024137:+1511 None:intergenic
GCGTCAAGAATTGCAAAATT+TGG 0.285212 tig0024137:+2998 Msa1414550:three_prime_UTR
AATTCACTTGCTTTGTGCTT+TGG 0.299790 tig0024137:-2138 None:intergenic
GAGTTGCCCGGTTAGGGTTT+CGG 0.311489 tig0024137:-2466 None:intergenic
AAATTAAGTGGCTGGGGATT+AGG 0.313422 tig0024137:+2859 Msa1414550:three_prime_UTR
GATTAGGCCAACGGATATTA+TGG 0.315857 tig0024137:+2875 Msa1414550:three_prime_UTR
ATCCTTTAACACATCTTTAA+CGG 0.321170 tig0024137:-2949 None:intergenic
CACAGATGACTCTCTCATAA+AGG 0.321752 tig0024137:+6645 Msa1414550:intron
TTCTGAAGTTGTCACGGAAT+TGG 0.335994 tig0024137:+2670 Msa1414550:three_prime_UTR
CATACGATAGATTGTTCAAT+AGG 0.340568 tig0024137:+2575 Msa1414550:three_prime_UTR
GATATTATGGCTAAACATTC+TGG 0.357289 tig0024137:+2888 Msa1414550:three_prime_UTR
GGTTTCGGACCTTAGGGTTT+CGG 0.360960 tig0024137:-2451 None:intergenic
AGGGAGGGAGTTGCCCGGTT+AGG 0.361655 tig0024137:-2473 None:intergenic
GATGTGTCTCACATACATTT+TGG 0.374156 tig0024137:-1615 None:intergenic
TTCCTTGTCTTTCAACTCGA+TGG 0.374825 tig0024137:-2388 None:intergenic
TCTTCCAGCTGCAGTTTCAT+TGG 0.375651 tig0024137:-3098 None:intergenic
GGGAGGGAGTTGCCCGGTTA+GGG 0.380413 tig0024137:-2472 None:intergenic
GACGATGTCGGCGATGGTAT+AGG 0.381513 tig0024137:-2304 None:intergenic
ACGATGTCGGCGATGGTATA+GGG 0.382732 tig0024137:-2303 None:intergenic
GTCAAGAATAAGCGAATGAT+TGG 0.386602 tig0024137:+3020 Msa1414550:three_prime_UTR
CCTCCCTTGTCCCCGGGAAA+AGG 0.394451 tig0024137:+2489 Msa1414550:CDS
TCCTTGTCTTTCAACTCGAT+GGG 0.409020 tig0024137:-2387 None:intergenic
TAGTTTGTGCTTAGATAAGT+TGG 0.409213 tig0024137:+6717 Msa1414550:three_prime_UTR
CTAAGGTCCGAAACCCTAAC+CGG 0.410514 tig0024137:+2459 Msa1414550:CDS
TTCCGTGACAACTTCAGAAT+CGG 0.415114 tig0024137:-2666 None:intergenic
GAAATCGATGTTGGCCTTGT+CGG 0.420658 tig0024137:-2202 None:intergenic
ATCGAGGCGCTGGCCTTGTG+CGG 0.425954 tig0024137:+3044 Msa1414550:three_prime_UTR
TTCGGTTTCTGTGTGGTGAA+TGG 0.426152 tig0024137:-2114 None:intergenic
GATGGACAATGACATGTCTT+TGG 0.429539 tig0024137:-2256 None:intergenic
ATGCTTATTCCCAAAACTGC+TGG 0.429895 tig0024137:+2605 Msa1414550:three_prime_UTR
TGGTATAGGGTGTCGTGCCT+AGG 0.431601 tig0024137:-2290 None:intergenic
GCAACTCCCTCCCTTGTCCC+CGG 0.432295 tig0024137:+2482 Msa1414550:CDS
TCGAGGCGCTGGCCTTGTGC+GGG 0.432528 tig0024137:+3045 Msa1414550:three_prime_UTR
GGATGCACTCTTCATTCTCT+TGG 0.433249 tig0024137:+2640 Msa1414550:three_prime_UTR
GAGACATAAAGCTATGTAGA+TGG 0.436287 tig0024137:-6860 None:intergenic
TTTGAGAACTCGATCCTCTT+CGG 0.437801 tig0024137:-2349 None:intergenic
TGAAACTGCAGCTGGAAGAT+TGG 0.439610 tig0024137:+3102 Msa1414550:three_prime_UTR
TCCTTGTATACGCTGGTGAA+TGG 0.441337 tig0024137:+2527 Msa1414550:exon
ATCTTCAAAGAGTGTGGATC+AGG 0.443588 tig0024137:-2809 None:intergenic
GGTTAGGGTTTCGGACCTTA+GGG 0.445994 tig0024137:-2457 None:intergenic
AATGATTGGCATCGAGGCGC+TGG 0.454876 tig0024137:+3034 Msa1414550:three_prime_UTR
AGGGTGTCGTGCCTAGGGTT+AGG 0.455729 tig0024137:-2284 None:intergenic
ATGGCGATGATGTCGGAATC+GGG 0.458714 tig0024137:-2417 None:intergenic
GATGGCGATGATGTCGGAAT+CGG 0.462322 tig0024137:-2418 None:intergenic
GACAATGACATGTCTTTGGC+GGG 0.463963 tig0024137:-2252 None:intergenic
ATGTCTTTGGCGGGGCGAAA+CGG 0.465556 tig0024137:-2243 None:intergenic
CCTTGTATACGCTGGTGAAT+GGG 0.466018 tig0024137:+2528 Msa1414550:exon
TGCATTGTTGTCTCCGCGGA+GGG 0.467661 tig0024137:+2722 Msa1414550:three_prime_UTR
CCCATTCACCAGCGTATACA+AGG 0.468089 tig0024137:-2528 None:intergenic
GGACAGAACAAGCCTAAAAC+AGG 0.472087 tig0024137:-2788 None:intergenic
TTCGGAGGACTTGAAATTGT+AGG 0.473232 tig0024137:-2331 None:intergenic
ACAGATGACTCTCTCATAAA+GGG 0.474215 tig0024137:+6646 Msa1414550:intron
GGGAATGCTGAGGAATCTTT+GGG 0.476526 tig0024137:+1512 Msa1414550:CDS
TACAAGGAGGTGAGAGGATG+AGG 0.483339 tig0024137:-2512 None:intergenic
AAACTTACCATATTAGCAAA+TGG 0.487913 tig0024137:-3140 None:intergenic
TCCACACTCTTTGAAGATGT+TGG 0.489309 tig0024137:+2814 Msa1414550:three_prime_UTR
TGCTTATTCCCAAAACTGCT+GGG 0.495886 tig0024137:+2606 Msa1414550:three_prime_UTR
CAACTCCCTCCCTTGTCCCC+GGG 0.496137 tig0024137:+2483 Msa1414550:CDS
AGGAATCTTTGGGTGGTGAA+TGG 0.496516 tig0024137:+1522 Msa1414550:CDS
TCCGTGACAACTTCAGAATC+GGG 0.521018 tig0024137:-2665 None:intergenic
ATTAGAGATTCGCTAAGCTA+AGG 0.523273 tig0024137:+6684 Msa1414550:three_prime_UTR
GGTTTCGGACCTTCTGAGGA+TGG 0.523443 tig0024137:-2436 None:intergenic
AGTGGATAAATGTATGACAT+TGG 0.524659 tig0024137:+6770 Msa1414550:three_prime_UTR
TTAGGGTTTCGGACCTTCTG+AGG 0.525088 tig0024137:-2440 None:intergenic
GTTGACATCCTTCGTAGTCA+TGG 0.527480 tig0024137:-2925 None:intergenic
GCATGATTTATTGACGAGGA+TGG 0.530653 tig0024137:+2748 Msa1414550:three_prime_UTR
TGTTTAGCCATAATATCCGT+TGG 0.534362 tig0024137:-2882 None:intergenic
GGAGTAATCGAAATCGATGT+TGG 0.535752 tig0024137:-2211 None:intergenic
GGTATAGGGTGTCGTGCCTA+GGG 0.537226 tig0024137:-2289 None:intergenic
TTTGCCAATGAAACTGCAGC+TGG 0.548133 tig0024137:+3094 Msa1414550:three_prime_UTR
TCAACTCGATGGGGCAATCG+AGG 0.552612 tig0024137:-2377 None:intergenic
CAACTCGATGGGGCAATCGA+GGG 0.555444 tig0024137:-2376 None:intergenic
GCCTAGGGTTAGGTCATCGA+TGG 0.562009 tig0024137:-2274 None:intergenic
GGACAATGACATGTCTTTGG+CGG 0.562071 tig0024137:-2253 None:intergenic
ATTGTAGGTACGGACGATGT+CGG 0.566546 tig0024137:-2316 None:intergenic
TCTGAGGATGGCGATGATGT+CGG 0.567295 tig0024137:-2424 None:intergenic
GGGCTAAGATCGTATTTGAC+AGG 0.567662 tig0024137:+3065 Msa1414550:three_prime_UTR
GGACAAGGGAGGGAGTTGCC+CGG 0.568305 tig0024137:-2478 None:intergenic
CAGAGACCGCGACTTACAAG+AGG 0.573675 tig0024137:+1556 Msa1414550:CDS
GCCAACATCTTCAAAGAGTG+TGG 0.579804 tig0024137:-2815 None:intergenic
ATGTGAAGTATGTTGAGGGT+GGG 0.580231 tig0024137:+2552 Msa1414550:three_prime_UTR
GTGCATTGTTGTCTCCGCGG+AGG 0.580543 tig0024137:+2721 Msa1414550:three_prime_UTR
CCTTGTCTTTCAACTCGATG+GGG 0.581073 tig0024137:-2386 None:intergenic
TCAGAAGGTCCGAAACCCTA+AGG 0.581601 tig0024137:+2442 Msa1414550:CDS
GCCCGATTCTGAAGTTGTCA+CGG 0.584874 tig0024137:+2664 Msa1414550:three_prime_UTR
GGGAATGTGAAGTATGTTGA+GGG 0.587975 tig0024137:+2548 Msa1414550:three_prime_UTR
TCCTCGTCAATAAATCATGC+GGG 0.591692 tig0024137:-2745 None:intergenic
CCCCATCGAGTTGAAAGACA+AGG 0.592066 tig0024137:+2386 Msa1414550:CDS
ACTCTCTCATAAAGGGTGCA+AGG 0.595414 tig0024137:+6653 Msa1414550:three_prime_UTR
AGGACTTGAAATTGTAGGTA+CGG 0.596272 tig0024137:-2326 None:intergenic
AACTGCTGGGAAAATGGAGA+CGG 0.599966 tig0024137:+2619 Msa1414550:three_prime_UTR
ACATCATCGCCATCCTCAGA+AGG 0.600402 tig0024137:+2427 Msa1414550:CDS
ATCCTCGTCAATAAATCATG+CGG 0.604578 tig0024137:-2746 None:intergenic
TAGTCATGGAGAAGCTAAGA+CGG 0.606739 tig0024137:-2911 None:intergenic
TAAGCGAATGATTGGCATCG+AGG 0.609995 tig0024137:+3028 Msa1414550:three_prime_UTR
GGTACGGACGATGTCGGCGA+TGG 0.611616 tig0024137:-2310 None:intergenic
AATGTGAAGTATGTTGAGGG+TGG 0.612589 tig0024137:+2551 Msa1414550:three_prime_UTR
GTGGCTGGGGATTAGGCCAA+CGG 0.613578 tig0024137:+2866 Msa1414550:three_prime_UTR
CAATTTCAAGTCCTCCGAAG+AGG 0.619873 tig0024137:+2335 Msa1414550:CDS
GAAGAGGATCGAGTTCTCAA+AGG 0.629337 tig0024137:+2351 Msa1414550:CDS
ATACGATCTTAGCCCGCACA+AGG 0.631726 tig0024137:-3057 None:intergenic
GGGGCGAAACGGACACTCGT+CGG 0.633441 tig0024137:-2232 None:intergenic
TAAGGTCCGAAACCCTAACC+GGG 0.636155 tig0024137:+2460 Msa1414550:CDS
TGAATTCACAAACAAACGCA+TGG 0.636482 tig0024137:+2155 Msa1414550:CDS
TGGAAGATTGGATTTGACGC+TGG 0.637032 tig0024137:+3114 Msa1414550:three_prime_UTR
AGCGTATACAAGGAGGTGAG+AGG 0.640027 tig0024137:-2518 None:intergenic
AATCTTCGATTTCTCCGACA+AGG 0.640474 tig0024137:+2188 Msa1414550:CDS
TCTCACCTCCTTGTATACGC+TGG 0.641192 tig0024137:+2520 Msa1414550:CDS
TGTCATCCTCTTGTAAGTCG+CGG 0.641299 tig0024137:-1562 None:intergenic
GAGAACTCGATCCTCTTCGG+AGG 0.643408 tig0024137:-2346 None:intergenic
TCCATCGATGACCTAACCCT+AGG 0.644597 tig0024137:+2273 Msa1414550:CDS
CTTTGGTTTCGGTTTCTGTG+TGG 0.651643 tig0024137:-2121 None:intergenic
TAAATCATGCGGGCCCTCCG+CGG 0.662412 tig0024137:-2735 None:intergenic
ACAATGCACTGAAAGCGTTG+AGG 0.669088 tig0024137:-2707 None:intergenic
GCCCGCATGATTTATTGACG+AGG 0.673429 tig0024137:+2744 Msa1414550:three_prime_UTR
AATGCTGAGGAATCTTTGGG+TGG 0.676642 tig0024137:+1515 Msa1414550:CDS
ACAATGACATGTCTTTGGCG+GGG 0.677367 tig0024137:-2251 None:intergenic
TGGGAATGTGAAGTATGTTG+AGG 0.677521 tig0024137:+2547 Msa1414550:three_prime_UTR
TAGCTTCTCCATGACTACGA+AGG 0.687861 tig0024137:+2917 Msa1414550:three_prime_UTR
TCAGTGCATTGTTGTCTCCG+CGG 0.702717 tig0024137:+2718 Msa1414550:three_prime_UTR
ATGTATGTGAGACACATCCG+CGG 0.731227 tig0024137:+1620 Msa1414550:CDS
ATTCACCAGCGTATACAAGG+AGG 0.740788 tig0024137:-2525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTGACTTTTTTTAAA+AGG + tig0024137:6744-6763 Msa1414550:three_prime_UTR 10.0%
!!! TTTTGTTTCTTATACTAATA+AGG - tig0024137:1944-1963 None:intergenic 15.0%
!!! TATGAATCTTTTATTTGAAT+AGG + tig0024137:4075-4094 Msa1414550:intron 15.0%
!! AGAAAAACATAGAAAAAAAA+AGG - tig0024137:4139-4158 None:intergenic 15.0%
!!! TATATTTTTCTAACCAAAAT+TGG + tig0024137:4604-4623 Msa1414550:intron 15.0%
!! TAGTAATTATAATGATGATT+GGG + tig0024137:5142-5161 Msa1414550:intron 15.0%
!! CATGATATATTATTATTTCA+TGG + tig0024137:6807-6826 Msa1414550:three_prime_UTR 15.0%
!!! ATTATTATTTCATGGATTAA+TGG + tig0024137:6815-6834 Msa1414550:three_prime_UTR 15.0%
!! ACAAAGTTAAATTTCCAAAA+CGG - tig0024137:1697-1716 None:intergenic 20.0%
!!! GGCTTTTTATATTTATGTTA+TGG + tig0024137:1751-1770 Msa1414550:intron 20.0%
!!! TTTTTTTCGGATAATTTTGT+TGG - tig0024137:1812-1831 None:intergenic 20.0%
!! AAAAATCAAAGATTGTGAAA+GGG - tig0024137:3310-3329 None:intergenic 20.0%
!! TAAAAATCAAAGATTGTGAA+AGG - tig0024137:3311-3330 None:intergenic 20.0%
!!! ATGTTCAATTAACTTTTCTA+GGG + tig0024137:3697-3716 Msa1414550:intron 20.0%
!! ACATTAAGGAAAAATGTATA+TGG - tig0024137:3861-3880 None:intergenic 20.0%
!! TATATCACAGTAAAACATTA+AGG - tig0024137:3875-3894 None:intergenic 20.0%
!! TATATGTTATCAATCTCAAT+TGG + tig0024137:4000-4019 Msa1414550:intron 20.0%
!!! AATTGTTTCTTGTGTAAATT+TGG + tig0024137:4214-4233 Msa1414550:intron 20.0%
!!! TTATTTTTAGTTGTCTTTTG+CGG + tig0024137:4382-4401 Msa1414550:intron 20.0%
!!! GGTTTTGATTATTATTACAA+GGG - tig0024137:4558-4577 None:intergenic 20.0%
!!! TGGTTTTGATTATTATTACA+AGG - tig0024137:4559-4578 None:intergenic 20.0%
!!! ACCATATATAAGGTATTTTT+CGG - tig0024137:4750-4769 None:intergenic 20.0%
!! CTAGTAATTATAATGATGAT+TGG + tig0024137:5141-5160 Msa1414550:intron 20.0%
!! AGTAATTATAATGATGATTG+GGG + tig0024137:5143-5162 Msa1414550:intron 20.0%
!!! TATTGGATTATTTCTCTTTA+TGG + tig0024137:5744-5763 Msa1414550:intron 20.0%
!! ATAACAATAGAGCAAATTAA+AGG - tig0024137:6165-6184 None:intergenic 20.0%
!! AAAAAATTCGACACATAAAA+GGG - tig0024137:6618-6637 None:intergenic 20.0%
!! TAAAAAATTCGACACATAAA+AGG - tig0024137:6619-6638 None:intergenic 20.0%
!!! ACTTTTTTTAAAAGGATTAG+TGG + tig0024137:6752-6771 Msa1414550:three_prime_UTR 20.0%
! ATTTGGTATGTTATGAATCA+TGG + tig0024137:1730-1749 Msa1414550:intron 25.0%
! TTTCTTATACTAATAAGGAC+AGG - tig0024137:1939-1958 None:intergenic 25.0%
! GAAACATTAATCCTATCAAT+TGG + tig0024137:2080-2099 Msa1414550:intron 25.0%
!!! CACTTAATTTTTCAAACAAG+TGG - tig0024137:2849-2868 None:intergenic 25.0%
! CACTTGTTTGAAAAATTAAG+TGG + tig0024137:2847-2866 Msa1414550:three_prime_UTR 25.0%
! ATCCTTTAACACATCTTTAA+CGG - tig0024137:2952-2971 None:intergenic 25.0%
! AAACTTACCATATTAGCAAA+TGG - tig0024137:3143-3162 None:intergenic 25.0%
! TTCTTACTAGTATGAATTGT+CGG + tig0024137:3615-3634 Msa1414550:intron 25.0%
!!! GAAAATAAAGTTTTTTGCCT+CGG + tig0024137:3637-3656 Msa1414550:intron 25.0%
!! GATGTTCAATTAACTTTTCT+AGG + tig0024137:3696-3715 Msa1414550:intron 25.0%
! TTAAACACGTTGAAACAATT+AGG - tig0024137:4162-4181 None:intergenic 25.0%
! TGTAAATTTGGACAGAATTT+GGG + tig0024137:4226-4245 Msa1414550:intron 25.0%
!! TTTTGCGGTCTTTTATAATT+TGG + tig0024137:4397-4416 Msa1414550:intron 25.0%
!! ATTTGTGTGTTTAAGATTAG+TGG + tig0024137:4518-4537 Msa1414550:intron 25.0%
!! TTTGTGTGTTTAAGATTAGT+GGG + tig0024137:4519-4538 Msa1414550:intron 25.0%
! TTATTCAAATGAACTTGAAG+TGG - tig0024137:4579-4598 None:intergenic 25.0%
! TCTAAATTTACACCTAGATA+AGG - tig0024137:4639-4658 None:intergenic 25.0%
!!! TAGTTGATTTGAAGTTAATC+AGG + tig0024137:4663-4682 Msa1414550:intron 25.0%
! GATTCATACAAAATAGTTAC+CGG + tig0024137:4978-4997 Msa1414550:intron 25.0%
! ATGATGCTTATGTAAATGTA+TGG + tig0024137:5009-5028 Msa1414550:intron 25.0%
! TGATGCTTATGTAAATGTAT+GGG + tig0024137:5010-5029 Msa1414550:intron 25.0%
!!! TCATTTTCTAGTTTAGTAAC+AGG - tig0024137:5206-5225 None:intergenic 25.0%
!! ATGAACCATCTTCAAAATTT+TGG + tig0024137:5222-5241 Msa1414550:intron 25.0%
!! TGAACCATCTTCAAAATTTT+GGG + tig0024137:5223-5242 Msa1414550:intron 25.0%
!! GTTGATCTATATACCATTTT+GGG - tig0024137:5309-5328 None:intergenic 25.0%
!! AGTTGATCTATATACCATTT+TGG - tig0024137:5310-5329 None:intergenic 25.0%
!! ATCAACTTATTTCTTTCACT+TGG + tig0024137:5323-5342 Msa1414550:intron 25.0%
! ATTTCTTTCACTTGGTTTAT+AGG + tig0024137:5331-5350 Msa1414550:intron 25.0%
! GTGTTGTGTAAAATTTGAAT+TGG + tig0024137:5472-5491 Msa1414550:intron 25.0%
! TGTGTAAAATTTGAATTGGA+AGG + tig0024137:5476-5495 Msa1414550:intron 25.0%
! GTGTAAAATTTGAATTGGAA+GGG + tig0024137:5477-5496 Msa1414550:intron 25.0%
! ATTTGTGAAATTAGCAACAA+GGG + tig0024137:5551-5570 Msa1414550:intron 25.0%
! ACAAGGGATATACAAAAAAT+TGG + tig0024137:5567-5586 Msa1414550:intron 25.0%
! GATTCAACTATGATATTTAG+AGG + tig0024137:5647-5666 Msa1414550:intron 25.0%
! ACTTTGATGAATGAAATTCA+CGG + tig0024137:5797-5816 Msa1414550:intron 25.0%
! TGAGGAATTATTTCATATCA+TGG + tig0024137:6020-6039 Msa1414550:intron 25.0%
! ATTTGCTCTATTGTTATCTA+TGG + tig0024137:6168-6187 Msa1414550:intron 25.0%
!! AATGGGATTTTATAGAAACT+TGG - tig0024137:6287-6306 None:intergenic 25.0%
!!! TGATATGTTTGGAATGTTTT+TGG - tig0024137:6390-6409 None:intergenic 25.0%
! CATTCCAAACATATCAATAT+TGG + tig0024137:6394-6413 Msa1414550:intron 25.0%
! ACAACCAATATTGATATGTT+TGG - tig0024137:6401-6420 None:intergenic 25.0%
!!! ATATTGGTTGTCATTTTATC+TGG + tig0024137:6410-6429 Msa1414550:intron 25.0%
!!! TATTGGTTGTCATTTTATCT+GGG + tig0024137:6411-6430 Msa1414550:intron 25.0%
! AAAAATTCGACACATAAAAG+GGG - tig0024137:6617-6636 None:intergenic 25.0%
TTAACTTTGTAGACCTATCT+AGG + tig0024137:1707-1726 Msa1414550:intron 30.0%
TAACATACCAAATCCTAGAT+AGG - tig0024137:1723-1742 None:intergenic 30.0%
!!! GGATGGATTTTGCTTTTTTT+CGG - tig0024137:1825-1844 None:intergenic 30.0%
TTATACTAATAAGGACAGGA+GGG - tig0024137:1935-1954 None:intergenic 30.0%
TGAATTGTCTACCAATTGAT+AGG - tig0024137:2094-2113 None:intergenic 30.0%
CATACGATAGATTGTTCAAT+AGG + tig0024137:2575-2594 Msa1414550:three_prime_UTR 30.0%
TTTCAAACAAGTGGCATAAA+AGG - tig0024137:2840-2859 None:intergenic 30.0%
TGTTTGAAAAATTAAGTGGC+TGG + tig0024137:2851-2870 Msa1414550:three_prime_UTR 30.0%
GTTTGAAAAATTAAGTGGCT+GGG + tig0024137:2852-2871 Msa1414550:three_prime_UTR 30.0%
TTTGAAAAATTAAGTGGCTG+GGG + tig0024137:2853-2872 Msa1414550:three_prime_UTR 30.0%
GATATTATGGCTAAACATTC+TGG + tig0024137:2888-2907 Msa1414550:three_prime_UTR 30.0%
! TTTTCAAAACTCGTCTAGAA+TGG + tig0024137:2976-2995 Msa1414550:three_prime_UTR 30.0%
GCATATTAGTGTTCTGATAT+TGG + tig0024137:3198-3217 Msa1414550:intron 30.0%
! GAAATTGAAAGGGAACTTTT+GGG + tig0024137:3553-3572 Msa1414550:intron 30.0%
ATAATTGCCAAAAGCCTTAA+TGG + tig0024137:3772-3791 Msa1414550:intron 30.0%
GTGTAAATTTGGACAGAATT+TGG + tig0024137:4225-4244 Msa1414550:intron 30.0%
! TTTGATTGAAGTACCATAGA+TGG - tig0024137:4289-4308 None:intergenic 30.0%
! GGTCTTTTATAATTTGGTTG+TGG + tig0024137:4403-4422 Msa1414550:intron 30.0%
! CTTTTATAATTTGGTTGTGG+AGG + tig0024137:4406-4425 Msa1414550:intron 30.0%
ATGTCAAAATGACATGTGAA+TGG - tig0024137:4480-4499 None:intergenic 30.0%
AACACACAAATGCAAAAAGT+AGG - tig0024137:4509-4528 None:intergenic 30.0%
! AAGGTTAGTAGTACCAATTT+TGG - tig0024137:4620-4639 None:intergenic 30.0%
!! AAATGATGGATGGATAATAC+CGG - tig0024137:4710-4729 None:intergenic 30.0%
TCAAAAGTAAGAGGAAATGA+TGG - tig0024137:4724-4743 None:intergenic 30.0%
GCCGAAAAATACCTTATATA+TGG + tig0024137:4746-4765 Msa1414550:intron 30.0%
GTCAGTTTAGACCATATATA+AGG - tig0024137:4760-4779 None:intergenic 30.0%
ACATTTACATAAGCATCATC+AGG - tig0024137:5008-5027 None:intergenic 30.0%
! GAACCATCTTCAAAATTTTG+GGG + tig0024137:5224-5243 Msa1414550:intron 30.0%
TGACATGTGAATAATCTTGA+TGG + tig0024137:5281-5300 Msa1414550:intron 30.0%
! TTATAGGAGTATGTTGGAAT+TGG + tig0024137:5347-5366 Msa1414550:intron 30.0%
TCATTGCATCACATATTGAA+AGG + tig0024137:5404-5423 Msa1414550:intron 30.0%
! ATCACATATTGAAAGGTATG+CGG + tig0024137:5411-5430 Msa1414550:intron 30.0%
GATTTGTGAAATTAGCAACA+AGG + tig0024137:5550-5569 Msa1414550:intron 30.0%
ATGAGACTATCGTTTATAGA+TGG + tig0024137:5622-5641 Msa1414550:intron 30.0%
! TATTTAGAGGTCTTGTATTC+TGG + tig0024137:5660-5679 Msa1414550:intron 30.0%
! TGGATTATTTCTCTTTATGG+AGG + tig0024137:5747-5766 Msa1414550:intron 30.0%
! GGATTATTTCTCTTTATGGA+GGG + tig0024137:5748-5767 Msa1414550:intron 30.0%
CATCAAAGTCAGAAAACTAT+TGG - tig0024137:5786-5805 None:intergenic 30.0%
CTTTGATGAATGAAATTCAC+GGG + tig0024137:5798-5817 Msa1414550:intron 30.0%
! AGCTTTTCCTTTTATGAGTA+TGG + tig0024137:5835-5854 Msa1414550:intron 30.0%
AAACGAACCATACTCATAAA+AGG - tig0024137:5845-5864 None:intergenic 30.0%
! CTTCAATACTGATAGTTTTC+TGG + tig0024137:5944-5963 Msa1414550:intron 30.0%
GGAATTATTTCATATCATGG+TGG + tig0024137:6023-6042 Msa1414550:intron 30.0%
! ATAAAATCCCATTGATAGCT+TGG + tig0024137:6294-6313 Msa1414550:intron 30.0%
TTGATTTCCAAGCTATCAAT+GGG - tig0024137:6304-6323 None:intergenic 30.0%
! TTTGATTTCCAAGCTATCAA+TGG - tig0024137:6305-6324 None:intergenic 30.0%
AGCTGATATGAACAAATTTG+AGG - tig0024137:6456-6475 None:intergenic 30.0%
! TAGTTTGTGCTTAGATAAGT+TGG + tig0024137:6717-6736 Msa1414550:three_prime_UTR 30.0%
AGTGGATAAATGTATGACAT+TGG + tig0024137:6770-6789 Msa1414550:three_prime_UTR 30.0%
!! TGTCTCACATACATTTTGGT+TGG - tig0024137:1614-1633 None:intergenic 35.0%
! GATGTGTCTCACATACATTT+TGG - tig0024137:1618-1637 None:intergenic 35.0%
!!! ACTTTTGGGATTGAAGATGA+TGG + tig0024137:1669-1688 Msa1414550:intron 35.0%
! TTGTAGACCTATCTAGGATT+TGG + tig0024137:1713-1732 Msa1414550:intron 35.0%
TATACTAATAAGGACAGGAG+GGG - tig0024137:1934-1953 None:intergenic 35.0%
CTTATACTAATAAGGACAGG+AGG - tig0024137:1936-1955 None:intergenic 35.0%
AATTCACTTGCTTTGTGCTT+TGG - tig0024137:2141-2160 None:intergenic 35.0%
TGAATTCACAAACAAACGCA+TGG + tig0024137:2155-2174 Msa1414550:CDS 35.0%
!! GAAATCGAAGATTTTGATGC+TGG - tig0024137:2181-2200 None:intergenic 35.0%
AGGACTTGAAATTGTAGGTA+CGG - tig0024137:2329-2348 None:intergenic 35.0%
ATCCTCGTCAATAAATCATG+CGG - tig0024137:2749-2768 None:intergenic 35.0%
! GAATTGAACTTGCCTGTTTT+AGG + tig0024137:2776-2795 Msa1414550:three_prime_UTR 35.0%
TGTTTAGCCATAATATCCGT+TGG - tig0024137:2885-2904 None:intergenic 35.0%
CACCGTTAAAGATGTGTTAA+AGG + tig0024137:2947-2966 Msa1414550:three_prime_UTR 35.0%
GCGTCAAGAATTGCAAAATT+TGG + tig0024137:2998-3017 Msa1414550:three_prime_UTR 35.0%
GTCAAGAATAAGCGAATGAT+TGG + tig0024137:3020-3039 Msa1414550:three_prime_UTR 35.0%
TGTCGATCTCAAAAAGCAAA+TGG - tig0024137:3358-3377 None:intergenic 35.0%
! GTTGACTTAAATAACCGATC+CGG - tig0024137:3502-3521 None:intergenic 35.0%
! GGAAATTGAAAGGGAACTTT+TGG + tig0024137:3552-3571 Msa1414550:intron 35.0%
AAAAGCAGTAAGAAGATGTG+AGG - tig0024137:3588-3607 None:intergenic 35.0%
TAGAAACTGAACCACCATTA+AGG - tig0024137:3789-3808 None:intergenic 35.0%
!! CAAGTGTTGAAAAAAACCTC+TGG + tig0024137:3825-3844 Msa1414550:intron 35.0%
GATTTGATAGAGTCATCGTT+TGG - tig0024137:4026-4045 None:intergenic 35.0%
!! AAAGTTTGAATGAGAGCATC+AGG - tig0024137:4105-4124 None:intergenic 35.0%
TCTGTTCTTCATTCCATCTA+TGG + tig0024137:4273-4292 Msa1414550:intron 35.0%
!! ACATTTTCCTTGATAGTTGC+AGG - tig0024137:4332-4351 None:intergenic 35.0%
TGCAACTATCAAGGAAAATG+TGG + tig0024137:4331-4350 Msa1414550:intron 35.0%
CTTCGTTCACTTAGTTACTT+TGG + tig0024137:4355-4374 Msa1414550:intron 35.0%
CAAGATTCAAGACCTATTTC+TGG + tig0024137:4451-4470 Msa1414550:intron 35.0%
TGTGAATGGAATCCAGAAAT+AGG - tig0024137:4466-4485 None:intergenic 35.0%
TGGTACTACTAACCTTATCT+AGG + tig0024137:4624-4643 Msa1414550:intron 35.0%
! AAGTAAGAGGAAATGATGGA+TGG - tig0024137:4720-4739 None:intergenic 35.0%
TTTCGGCTTTCAAAAGTAAG+AGG - tig0024137:4733-4752 None:intergenic 35.0%
TCATACAAAATAGTTACCGG+TGG + tig0024137:4981-5000 Msa1414550:intron 35.0%
!!! TTCCTTTCTTTGTTTTGACG+AGG + tig0024137:5058-5077 Msa1414550:intron 35.0%
TTCCTCGTCAAAACAAAGAA+AGG - tig0024137:5063-5082 None:intergenic 35.0%
!!! ATTGGGGTGTTTTTAGCTTT+AGG + tig0024137:5159-5178 Msa1414550:intron 35.0%
!!! TTGGGGTGTTTTTAGCTTTA+GGG + tig0024137:5160-5179 Msa1414550:intron 35.0%
!! GAACCCCAAAATTTTGAAGA+TGG - tig0024137:5230-5249 None:intergenic 35.0%
! AATCTTGATGGATCCCAAAA+TGG + tig0024137:5293-5312 Msa1414550:intron 35.0%
! CTTGGTTTATAGGAGTATGT+TGG + tig0024137:5341-5360 Msa1414550:intron 35.0%
TTGGCACAACATTTGACTAT+TGG + tig0024137:5727-5746 Msa1414550:intron 35.0%
AAATTCACGGGAATTTGAAG+TGG + tig0024137:5810-5829 Msa1414550:intron 35.0%
!!! TGGGCTTAGTTTTATTTGCA+AGG + tig0024137:5912-5931 Msa1414550:intron 35.0%
!!! GCTTAGTTTTATTTGCAAGG+TGG + tig0024137:5915-5934 Msa1414550:intron 35.0%
CTGGAGAAGAATTGAAAGAT+CGG + tig0024137:5981-6000 Msa1414550:intron 35.0%
! TATCATGGTGGAGTTTGATA+AGG + tig0024137:6035-6054 Msa1414550:intron 35.0%
! ATCATGGTGGAGTTTGATAA+GGG + tig0024137:6036-6055 Msa1414550:intron 35.0%
TAGCTTATCTCTTAGCAATG+TGG + tig0024137:6112-6131 Msa1414550:intron 35.0%
TGCTCTATTGTTATCTATGG+TGG + tig0024137:6171-6190 Msa1414550:intron 35.0%
CTTGTTGCGTATGTATGATA+AGG + tig0024137:6194-6213 Msa1414550:intron 35.0%
GTATGTATGATAAGGCAGTT+GGG + tig0024137:6202-6221 Msa1414550:intron 35.0%
CAACAATAACTCAGATGTGA+GGG - tig0024137:6348-6367 None:intergenic 35.0%
TCAACAATAACTCAGATGTG+AGG - tig0024137:6349-6368 None:intergenic 35.0%
ACACACCACATACATGTATA+TGG + tig0024137:6586-6605 Msa1414550:intron 35.0%
TCAGTCCATATACATGTATG+TGG - tig0024137:6594-6613 None:intergenic 35.0%
ACAGATGACTCTCTCATAAA+GGG + tig0024137:6646-6665 Msa1414550:intron 35.0%
ATTAGAGATTCGCTAAGCTA+AGG + tig0024137:6684-6703 Msa1414550:three_prime_UTR 35.0%
GAGACATAAAGCTATGTAGA+TGG - tig0024137:6863-6882 None:intergenic 35.0%
!!! CTCACATACATTTTGGTTGG+TGG - tig0024137:1611-1630 None:intergenic 40.0%
CTTTCATTGTTTACTGACCG+CGG - tig0024137:1640-1659 None:intergenic 40.0%
! TGAAAGGTAGCGCTTACTTT+TGG + tig0024137:1654-1673 Msa1414550:intron 40.0%
!! GAAAGGTAGCGCTTACTTTT+GGG + tig0024137:1655-1674 Msa1414550:intron 40.0%
ATACTAATAAGGACAGGAGG+GGG - tig0024137:1933-1952 None:intergenic 40.0%
! CTTGCTTTGTGCTTTGGTTT+CGG - tig0024137:2135-2154 None:intergenic 40.0%
AATCTTCGATTTCTCCGACA+AGG + tig0024137:2188-2207 Msa1414550:CDS 40.0%
GGAGTAATCGAAATCGATGT+TGG - tig0024137:2214-2233 None:intergenic 40.0%
GATGGACAATGACATGTCTT+TGG - tig0024137:2259-2278 None:intergenic 40.0%
TTCGGAGGACTTGAAATTGT+AGG - tig0024137:2334-2353 None:intergenic 40.0%
TTTGAGAACTCGATCCTCTT+CGG - tig0024137:2352-2371 None:intergenic 40.0%
TCCTTGTCTTTCAACTCGAT+GGG - tig0024137:2390-2409 None:intergenic 40.0%
TTCCTTGTCTTTCAACTCGA+TGG - tig0024137:2391-2410 None:intergenic 40.0%
TGGGAATGTGAAGTATGTTG+AGG + tig0024137:2547-2566 Msa1414550:three_prime_UTR 40.0%
GGGAATGTGAAGTATGTTGA+GGG + tig0024137:2548-2567 Msa1414550:three_prime_UTR 40.0%
AATGTGAAGTATGTTGAGGG+TGG + tig0024137:2551-2570 Msa1414550:three_prime_UTR 40.0%
ATGTGAAGTATGTTGAGGGT+GGG + tig0024137:2552-2571 Msa1414550:three_prime_UTR 40.0%
ATGCTTATTCCCAAAACTGC+TGG + tig0024137:2605-2624 Msa1414550:three_prime_UTR 40.0%
TGCTTATTCCCAAAACTGCT+GGG + tig0024137:2606-2625 Msa1414550:three_prime_UTR 40.0%
! TCCATTTTCCCAGCAGTTTT+GGG - tig0024137:2617-2636 None:intergenic 40.0%
TTCCGTGACAACTTCAGAAT+CGG - tig0024137:2669-2688 None:intergenic 40.0%
!! TTCTGAAGTTGTCACGGAAT+TGG + tig0024137:2670-2689 Msa1414550:three_prime_UTR 40.0%
TCCTCGTCAATAAATCATGC+GGG - tig0024137:2748-2767 None:intergenic 40.0%
GCATGATTTATTGACGAGGA+TGG + tig0024137:2748-2767 Msa1414550:three_prime_UTR 40.0%
! ATCTTCAAAGAGTGTGGATC+AGG - tig0024137:2812-2831 None:intergenic 40.0%
! TCCACACTCTTTGAAGATGT+TGG + tig0024137:2814-2833 Msa1414550:three_prime_UTR 40.0%
AAATTAAGTGGCTGGGGATT+AGG + tig0024137:2859-2878 Msa1414550:three_prime_UTR 40.0%
GATTAGGCCAACGGATATTA+TGG + tig0024137:2875-2894 Msa1414550:three_prime_UTR 40.0%
TAGTCATGGAGAAGCTAAGA+CGG - tig0024137:2914-2933 None:intergenic 40.0%
! CTGGTTGCCATTTGCTAATA+TGG + tig0024137:3133-3152 Msa1414550:three_prime_UTR 40.0%
TCAAAGATTGTGAAAGGGTC+TGG - tig0024137:3305-3324 None:intergenic 40.0%
! AAGCTAGCTTAGGTCAAGTT+AGG - tig0024137:3427-3446 None:intergenic 40.0%
ATATCTTCGTAATGCCGGAT+CGG + tig0024137:3485-3504 Msa1414550:intron 40.0%
ACGAAGTGGGGAAATTGAAA+GGG + tig0024137:3543-3562 Msa1414550:intron 40.0%
TTTGCCTCGGAAATGATTTG+CGG + tig0024137:3650-3669 Msa1414550:intron 40.0%
TAATGACCAGAAATGGTGAG+AGG + tig0024137:3724-3743 Msa1414550:intron 40.0%
ATTGCCAAAAGCCTTAATGG+TGG + tig0024137:3775-3794 Msa1414550:intron 40.0%
! TGAACCACCATTAAGGCTTT+TGG - tig0024137:3782-3801 None:intergenic 40.0%
ATATGGCATTAGTTAGCCAG+AGG - tig0024137:3844-3863 None:intergenic 40.0%
TGGGTTCTCAATGACAAAGA+TGG + tig0024137:4245-4264 Msa1414550:intron 40.0%
! TTGATAGTTGCAGGATGAGA+AGG - tig0024137:4323-4342 None:intergenic 40.0%
TTCTCATCCTGCAACTATCA+AGG + tig0024137:4322-4341 Msa1414550:intron 40.0%
ATTTATGTGTCTCAGCCAAC+CGG + tig0024137:4688-4707 Msa1414550:intron 40.0%
ATATGGTCTAAACTGACCTC+CGG + tig0024137:4763-4782 Msa1414550:intron 40.0%
GCCAACTATGGAGGAATAAT+CGG + tig0024137:4815-4834 Msa1414550:intron 40.0%
TCCGATTATTCCTCCATAGT+TGG - tig0024137:4819-4838 None:intergenic 40.0%
!! GAGCAATGCTTTGGGATATT+AGG + tig0024137:4877-4896 Msa1414550:intron 40.0%
AATGTATGGGAAGTTGAGAC+TGG + tig0024137:5023-5042 Msa1414550:intron 40.0%
!!! TGTTTTGACGAGGAAGACAT+TGG + tig0024137:5068-5087 Msa1414550:intron 40.0%
TGGTTCTTTCTGTGATGACA+TGG + tig0024137:5091-5110 Msa1414550:intron 40.0%
TGTGATGACATGGTTGTAGA+TGG + tig0024137:5101-5120 Msa1414550:intron 40.0%
!! TAGCTTTAGGGACTTCGATA+AGG + tig0024137:5172-5191 Msa1414550:intron 40.0%
! TAGGAGTATGTTGGAATTGG+TGG + tig0024137:5350-5369 Msa1414550:intron 40.0%
GTGTCTCAGTGTTATCTATG+TGG + tig0024137:5593-5612 Msa1414550:intron 40.0%
TCTGCATAACTGTAGATTGC+TGG + tig0024137:5885-5904 Msa1414550:intron 40.0%
CGATCTTTCAATTCTTCTCC+AGG - tig0024137:5983-6002 None:intergenic 40.0%
! TCATGGTGGAGTTTGATAAG+GGG + tig0024137:6037-6056 Msa1414550:intron 40.0%
!!! TCTGAGGTGTTTTTAGTGAC+AGG + tig0024137:6062-6081 Msa1414550:intron 40.0%
!!! GTGTTTTTAGTGACAGGAAC+TGG + tig0024137:6068-6087 Msa1414550:intron 40.0%
CGTATGTATGATAAGGCAGT+TGG + tig0024137:6201-6220 Msa1414550:intron 40.0%
!! ATAGGCAGTAACTTTGAGAC+TGG - tig0024137:6241-6260 None:intergenic 40.0%
CACAGATGACTCTCTCATAA+AGG + tig0024137:6645-6664 Msa1414550:intron 40.0%
GGGAATGCTGAGGAATCTTT+GGG + tig0024137:1512-1531 Msa1414550:CDS 45.0%
AATGCTGAGGAATCTTTGGG+TGG + tig0024137:1515-1534 Msa1414550:CDS 45.0%
AGGAATCTTTGGGTGGTGAA+TGG + tig0024137:1522-1541 Msa1414550:CDS 45.0%
TGTCATCCTCTTGTAAGTCG+CGG - tig0024137:1565-1584 None:intergenic 45.0%
ATGTATGTGAGACACATCCG+CGG + tig0024137:1620-1639 Msa1414550:CDS 45.0%
CGCGGTCAGTAAACAATGAA+AGG + tig0024137:1638-1657 Msa1414550:intron 45.0%
!!! TGAAGATGATGGAGCCGTTT+TGG + tig0024137:1680-1699 Msa1414550:intron 45.0%
TTATCAACCCGTGTTTCGCA+CGG - tig0024137:1847-1866 None:intergenic 45.0%
TTCGGTTTCTGTGTGGTGAA+TGG - tig0024137:2117-2136 None:intergenic 45.0%
! CTTTGGTTTCGGTTTCTGTG+TGG - tig0024137:2124-2143 None:intergenic 45.0%
!! GAAATCGATGTTGGCCTTGT+CGG - tig0024137:2205-2224 None:intergenic 45.0%
ACAATGACATGTCTTTGGCG+GGG - tig0024137:2254-2273 None:intergenic 45.0%
GACAATGACATGTCTTTGGC+GGG - tig0024137:2255-2274 None:intergenic 45.0%
GGACAATGACATGTCTTTGG+CGG - tig0024137:2256-2275 None:intergenic 45.0%
ATTGTAGGTACGGACGATGT+CGG - tig0024137:2319-2338 None:intergenic 45.0%
! CAATTTCAAGTCCTCCGAAG+AGG + tig0024137:2335-2354 Msa1414550:CDS 45.0%
GAAGAGGATCGAGTTCTCAA+AGG + tig0024137:2351-2370 Msa1414550:CDS 45.0%
CCTTGTCTTTCAACTCGATG+GGG - tig0024137:2389-2408 None:intergenic 45.0%
ATTCACCAGCGTATACAAGG+AGG - tig0024137:2528-2547 None:intergenic 45.0%
TCCTTGTATACGCTGGTGAA+TGG + tig0024137:2527-2546 Msa1414550:exon 45.0%
CCTTGTATACGCTGGTGAAT+GGG + tig0024137:2528-2547 Msa1414550:exon 45.0%
TCCCAAAACTGCTGGGAAAA+TGG + tig0024137:2613-2632 Msa1414550:three_prime_UTR 45.0%
! CTCCATTTTCCCAGCAGTTT+TGG - tig0024137:2618-2637 None:intergenic 45.0%
AACTGCTGGGAAAATGGAGA+CGG + tig0024137:2619-2638 Msa1414550:three_prime_UTR 45.0%
GGATGCACTCTTCATTCTCT+TGG + tig0024137:2640-2659 Msa1414550:three_prime_UTR 45.0%
TCCGTGACAACTTCAGAATC+GGG - tig0024137:2668-2687 None:intergenic 45.0%
!! ACAATGCACTGAAAGCGTTG+AGG - tig0024137:2710-2729 None:intergenic 45.0%
GGACAGAACAAGCCTAAAAC+AGG - tig0024137:2791-2810 None:intergenic 45.0%
GCCAACATCTTCAAAGAGTG+TGG - tig0024137:2818-2837 None:intergenic 45.0%
TAGCTTCTCCATGACTACGA+AGG + tig0024137:2917-2936 Msa1414550:three_prime_UTR 45.0%
GTTGACATCCTTCGTAGTCA+TGG - tig0024137:2928-2947 None:intergenic 45.0%
TAAGCGAATGATTGGCATCG+AGG + tig0024137:3028-3047 Msa1414550:three_prime_UTR 45.0%
GGGCTAAGATCGTATTTGAC+AGG + tig0024137:3065-3084 Msa1414550:three_prime_UTR 45.0%
TTTGCCAATGAAACTGCAGC+TGG + tig0024137:3094-3113 Msa1414550:three_prime_UTR 45.0%
TCTTCCAGCTGCAGTTTCAT+TGG - tig0024137:3101-3120 None:intergenic 45.0%
TGAAACTGCAGCTGGAAGAT+TGG + tig0024137:3102-3121 Msa1414550:three_prime_UTR 45.0%
TGGAAGATTGGATTTGACGC+TGG + tig0024137:3114-3133 Msa1414550:three_prime_UTR 45.0%
! GTCTGATGTCAAGCTAGCTT+AGG - tig0024137:3437-3456 None:intergenic 45.0%
GTCGCATATCTTCGTAATGC+CGG + tig0024137:3480-3499 Msa1414550:intron 45.0%
GACGAAGTGGGGAAATTGAA+AGG + tig0024137:3542-3561 Msa1414550:intron 45.0%
AACACCGCAAATCATTTCCG+AGG - tig0024137:3657-3676 None:intergenic 45.0%
! GGGAGTGTAATGACCAGAAA+TGG + tig0024137:3717-3736 Msa1414550:intron 45.0%
CAAACACCTCTCACCATTTC+TGG - tig0024137:3733-3752 None:intergenic 45.0%
GATGGATGGATAATACCGGT+TGG - tig0024137:4706-4725 None:intergenic 45.0%
TATGGTCTAAACTGACCTCC+GGG + tig0024137:4764-4783 Msa1414550:intron 45.0%
TGTCGCATAGAGCTGAAACT+AGG - tig0024137:4790-4809 None:intergenic 45.0%
!! AAAGCATTGCTCTGCAGTGT+AGG - tig0024137:4869-4888 None:intergenic 45.0%
TACACTGCAGAGCAATGCTT+TGG + tig0024137:4868-4887 Msa1414550:intron 45.0%
ACACTGCAGAGCAATGCTTT+GGG + tig0024137:4869-4888 Msa1414550:intron 45.0%
!! GCTATCGGTACTGGCTTTAA+TGG - tig0024137:4915-4934 None:intergenic 45.0%
ACCAGTAACTCGTTTGCACA+TGG + tig0024137:4956-4975 Msa1414550:intron 45.0%
TCCATGTGCAAACGAGTTAC+TGG - tig0024137:4960-4979 None:intergenic 45.0%
ATAAGCATCATCAGGTCCAC+CGG - tig0024137:5000-5019 None:intergenic 45.0%
TTTGACGAGGAAGACATTGG+TGG + tig0024137:5071-5090 Msa1414550:intron 45.0%
ACAAGTCCTTCCCAGTTAAC+TGG - tig0024137:5381-5400 None:intergenic 45.0%
! AGTGTCAAGTTGTTACGAGC+TGG + tig0024137:5446-5465 Msa1414550:intron 45.0%
! TCAAGTTGTTACGAGCTGGA+AGG + tig0024137:5450-5469 Msa1414550:intron 45.0%
AATTGGAAGGGTCTGACTGA+TGG + tig0024137:5489-5508 Msa1414550:intron 45.0%
TGTATTCTGGCGCAACACAT+TGG + tig0024137:5673-5692 Msa1414550:intron 45.0%
! ACATTGGTGTCTTTCTCAGC+AGG + tig0024137:5689-5708 Msa1414550:intron 45.0%
! CATTGGTGTCTTTCTCAGCA+GGG + tig0024137:5690-5709 Msa1414550:intron 45.0%
AACTGTAGATTGCTGGTGTG+TGG + tig0024137:5892-5911 Msa1414550:intron 45.0%
ACTGTAGATTGCTGGTGTGT+GGG + tig0024137:5893-5912 Msa1414550:intron 45.0%
GAAGAATTGAAAGATCGGCG+TGG + tig0024137:5986-6005 Msa1414550:intron 45.0%
! CATGGTGGAGTTTGATAAGG+GGG + tig0024137:6038-6057 Msa1414550:intron 45.0%
! ATGGTGGAGTTTGATAAGGG+GGG + tig0024137:6039-6058 Msa1414550:intron 45.0%
TAAGGCAGTTGGGACTGTAA+TGG + tig0024137:6212-6231 Msa1414550:intron 45.0%
! ACTCTCTCATAAAGGGTGCA+AGG + tig0024137:6653-6672 Msa1414550:three_prime_UTR 45.0%
!!! TGTTTTTTTTTTTTAATTTA+AGG + tig0024137:3171-3190 Msa1414550:intron 5.0%
AATCCATCCCGTGCGAAACA+CGG + tig0024137:1836-1855 Msa1414550:intron 50.0%
TATCAACCCGTGTTTCGCAC+GGG - tig0024137:1846-1865 None:intergenic 50.0%
TCCATCGATGACCTAACCCT+AGG + tig0024137:2273-2292 Msa1414550:CDS 50.0%
ACGATGTCGGCGATGGTATA+GGG - tig0024137:2306-2325 None:intergenic 50.0%
!! CCCCATCGAGTTGAAAGACA+AGG + tig0024137:2386-2405 Msa1414550:CDS 50.0%
ATGGCGATGATGTCGGAATC+GGG - tig0024137:2420-2439 None:intergenic 50.0%
GATGGCGATGATGTCGGAAT+CGG - tig0024137:2421-2440 None:intergenic 50.0%
TCTGAGGATGGCGATGATGT+CGG - tig0024137:2427-2446 None:intergenic 50.0%
ACATCATCGCCATCCTCAGA+AGG + tig0024137:2427-2446 Msa1414550:CDS 50.0%
TTAGGGTTTCGGACCTTCTG+AGG - tig0024137:2443-2462 None:intergenic 50.0%
TCAGAAGGTCCGAAACCCTA+AGG + tig0024137:2442-2461 Msa1414550:CDS 50.0%
GGTTTCGGACCTTAGGGTTT+CGG - tig0024137:2454-2473 None:intergenic 50.0%
GGTTAGGGTTTCGGACCTTA+GGG - tig0024137:2460-2479 None:intergenic 50.0%
CTAAGGTCCGAAACCCTAAC+CGG + tig0024137:2459-2478 Msa1414550:CDS 50.0%
TAAGGTCCGAAACCCTAACC+GGG + tig0024137:2460-2479 Msa1414550:CDS 50.0%
TACAAGGAGGTGAGAGGATG+AGG - tig0024137:2515-2534 None:intergenic 50.0%
AGCGTATACAAGGAGGTGAG+AGG - tig0024137:2521-2540 None:intergenic 50.0%
TCTCACCTCCTTGTATACGC+TGG + tig0024137:2520-2539 Msa1414550:CDS 50.0%
CCCATTCACCAGCGTATACA+AGG - tig0024137:2531-2550 None:intergenic 50.0%
!! GCCCGATTCTGAAGTTGTCA+CGG + tig0024137:2664-2683 Msa1414550:three_prime_UTR 50.0%
TCAGTGCATTGTTGTCTCCG+CGG + tig0024137:2718-2737 Msa1414550:three_prime_UTR 50.0%
GCCCGCATGATTTATTGACG+AGG + tig0024137:2744-2763 Msa1414550:three_prime_UTR 50.0%
ATACGATCTTAGCCCGCACA+AGG - tig0024137:3060-3079 None:intergenic 50.0%
!! CGTCGAAGGCATCATCTCTT+TGG - tig0024137:3526-3545 None:intergenic 50.0%
AGATGATGCCTTCGACGAAG+TGG + tig0024137:3529-3548 Msa1414550:intron 50.0%
GATGATGCCTTCGACGAAGT+GGG + tig0024137:3530-3549 Msa1414550:intron 50.0%
ATGATGCCTTCGACGAAGTG+GGG + tig0024137:3531-3550 Msa1414550:intron 50.0%
CAATTTCCCCACTTCGTCGA+AGG - tig0024137:3540-3559 None:intergenic 50.0%
CATAGAGCTGAAACTAGGCC+CGG - tig0024137:4785-4804 None:intergenic 50.0%
TGCGACATACTCGCCAACTA+TGG + tig0024137:4803-4822 Msa1414550:intron 50.0%
GACATACTCGCCAACTATGG+AGG + tig0024137:4806-4825 Msa1414550:intron 50.0%
TCTAACTCGGCTATCGGTAC+TGG - tig0024137:4924-4943 None:intergenic 50.0%
! GTACCGATAGCCGAGTTAGA+CGG + tig0024137:4924-4943 Msa1414550:intron 50.0%
TACCGATAGCCGAGTTAGAC+GGG + tig0024137:4925-4944 Msa1414550:intron 50.0%
TCCAGAATGCCCGTCTAACT+CGG - tig0024137:4937-4956 None:intergenic 50.0%
TGGTGGCTAAGCCAGTTAAC+TGG + tig0024137:5367-5386 Msa1414550:intron 50.0%
GGTGGCTAAGCCAGTTAACT+GGG + tig0024137:5368-5387 Msa1414550:intron 50.0%
GCTAAGCCAGTTAACTGGGA+AGG + tig0024137:5372-5391 Msa1414550:intron 50.0%
!! CAGGGTGCTGCTGATACTAT+TGG + tig0024137:5708-5727 Msa1414550:intron 50.0%
AGTTTGATAAGGGGGGTCTG+AGG + tig0024137:6046-6065 Msa1414550:intron 50.0%
AGTTACTGCCTATGTGAGCG+CGG + tig0024137:6248-6267 Msa1414550:intron 50.0%
! ATCTGGGAGTGTGTTCGTTC+TGG + tig0024137:6427-6446 Msa1414550:intron 50.0%
CAGAGACCGCGACTTACAAG+AGG + tig0024137:1556-1575 Msa1414550:CDS 55.0%
ATCCATCCCGTGCGAAACAC+GGG + tig0024137:1837-1856 Msa1414550:intron 55.0%
ATGTCTTTGGCGGGGCGAAA+CGG - tig0024137:2246-2265 None:intergenic 55.0%
GCCTAGGGTTAGGTCATCGA+TGG - tig0024137:2277-2296 None:intergenic 55.0%
!! GGTATAGGGTGTCGTGCCTA+GGG - tig0024137:2292-2311 None:intergenic 55.0%
!! TGGTATAGGGTGTCGTGCCT+AGG - tig0024137:2293-2312 None:intergenic 55.0%
GACGATGTCGGCGATGGTAT+AGG - tig0024137:2307-2326 None:intergenic 55.0%
GAGAACTCGATCCTCTTCGG+AGG - tig0024137:2349-2368 None:intergenic 55.0%
CAACTCGATGGGGCAATCGA+GGG - tig0024137:2379-2398 None:intergenic 55.0%
TCAACTCGATGGGGCAATCG+AGG - tig0024137:2380-2399 None:intergenic 55.0%
! GGTTTCGGACCTTCTGAGGA+TGG - tig0024137:2439-2458 None:intergenic 55.0%
CGGTTAGGGTTTCGGACCTT+AGG - tig0024137:2461-2480 None:intergenic 55.0%
GAGTTGCCCGGTTAGGGTTT+CGG - tig0024137:2469-2488 None:intergenic 55.0%
! AGAGGATGAGGCCTTTTCCC+GGG - tig0024137:2503-2522 None:intergenic 55.0%
! GAGAGGATGAGGCCTTTTCC+CGG - tig0024137:2504-2523 None:intergenic 55.0%
TGCATTGTTGTCTCCGCGGA+GGG + tig0024137:2722-2741 Msa1414550:three_prime_UTR 55.0%
! AATGATTGGCATCGAGGCGC+TGG + tig0024137:3034-3053 Msa1414550:three_prime_UTR 55.0%
TGCCCGTCTAACTCGGCTAT+CGG - tig0024137:4930-4949 None:intergenic 55.0%
! GAAGGGTCTGACTGATGGTG+CGG + tig0024137:5494-5513 Msa1414550:intron 55.0%
!! TCTGGAGTGTTGTAGCGTCC+TGG + tig0024137:5962-5981 Msa1414550:intron 55.0%
GGCGTGGATCGCATAGAATG+AGG + tig0024137:6002-6021 Msa1414550:intron 55.0%
TGCCTATGTGAGCGCGGATT+GGG + tig0024137:6254-6273 Msa1414550:intron 55.0%
AACCCGTGTTTCGCACGGGA+TGG - tig0024137:1842-1861 None:intergenic 60.0%
!! AGGGTGTCGTGCCTAGGGTT+AGG - tig0024137:2287-2306 None:intergenic 60.0%
! CTTTTCCCGGGGACAAGGGA+GGG - tig0024137:2491-2510 None:intergenic 60.0%
! AGGCCTTTTCCCGGGGACAA+GGG - tig0024137:2495-2514 None:intergenic 60.0%
! GAGGATGAGGCCTTTTCCCG+GGG - tig0024137:2502-2521 None:intergenic 60.0%
GTGCATTGTTGTCTCCGCGG+AGG + tig0024137:2721-2740 Msa1414550:three_prime_UTR 60.0%
TAAATCATGCGGGCCCTCCG+CGG - tig0024137:2738-2757 None:intergenic 60.0%
GTGGCTGGGGATTAGGCCAA+CGG + tig0024137:2866-2885 Msa1414550:three_prime_UTR 60.0%
AGAGCTGAAACTAGGCCCGG+AGG - tig0024137:4782-4801 None:intergenic 60.0%
GCCGAGTTAGACGGGCATTC+TGG + tig0024137:4933-4952 Msa1414550:intron 60.0%
CTGCCTATGTGAGCGCGGAT+TGG + tig0024137:6253-6272 Msa1414550:intron 60.0%
! GCCTATGTGAGCGCGGATTG+GGG + tig0024137:6255-6274 Msa1414550:intron 60.0%
TCCCCAATCCGCGCTCACAT+AGG - tig0024137:6259-6278 None:intergenic 60.0%
GGGGCGAAACGGACACTCGT+CGG - tig0024137:2235-2254 None:intergenic 65.0%
GGTACGGACGATGTCGGCGA+TGG - tig0024137:2313-2332 None:intergenic 65.0%
GGGAGGGAGTTGCCCGGTTA+GGG - tig0024137:2475-2494 None:intergenic 65.0%
AGGGAGGGAGTTGCCCGGTT+AGG - tig0024137:2476-2495 None:intergenic 65.0%
GGACAAGGGAGGGAGTTGCC+CGG - tig0024137:2481-2500 None:intergenic 65.0%
GCAACTCCCTCCCTTGTCCC+CGG + tig0024137:2482-2501 Msa1414550:CDS 65.0%
CAACTCCCTCCCTTGTCCCC+GGG + tig0024137:2483-2502 Msa1414550:CDS 65.0%
! CCTTTTCCCGGGGACAAGGG+AGG - tig0024137:2492-2511 None:intergenic 65.0%
CCTCCCTTGTCCCCGGGAAA+AGG + tig0024137:2489-2508 Msa1414550:CDS 65.0%
! GAGGCCTTTTCCCGGGGACA+AGG - tig0024137:2496-2515 None:intergenic 65.0%
!! ATCGAGGCGCTGGCCTTGTG+CGG + tig0024137:3044-3063 Msa1414550:three_prime_UTR 65.0%
!! TCGAGGCGCTGGCCTTGTGC+GGG + tig0024137:3045-3064 Msa1414550:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0024137 gene 1512 6903 1512 ID=Msa1414550;Name=Msa1414550
tig0024137 mRNA 1512 6903 1512 ID=Msa1414550-mRNA-1;Parent=Msa1414550;Name=Msa1414550-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.5|0.33|0.66|0.5|0|3|863|189
tig0024137 exon 1512 1641 1512 ID=Msa1414550-mRNA-1:exon:21889;Parent=Msa1414550-mRNA-1
tig0024137 exon 2106 3154 2106 ID=Msa1414550-mRNA-1:exon:21890;Parent=Msa1414550-mRNA-1
tig0024137 exon 6650 6903 6650 ID=Msa1414550-mRNA-1:exon:21891;Parent=Msa1414550-mRNA-1
tig0024137 CDS 1512 1641 1512 ID=Msa1414550-mRNA-1:cds;Parent=Msa1414550-mRNA-1
tig0024137 CDS 2106 2545 2106 ID=Msa1414550-mRNA-1:cds;Parent=Msa1414550-mRNA-1
tig0024137 three_prime_UTR 2546 3154 2546 ID=Msa1414550-mRNA-1:three_prime_utr;Parent=Msa1414550-mRNA-1
tig0024137 three_prime_UTR 6650 6903 6650 ID=Msa1414550-mRNA-1:three_prime_utr;Parent=Msa1414550-mRNA-1
Gene Sequence

>Msa1414550

GGGAATGCTGAGGAATCTTTGGGTGGTGAATGGTCTGAATTCGTCAGAGACCGCGACTTACAAGAGGATGACAAGTTGATCTTTGATTTAGAAGATCCACCAACCAAAATGTATGTGAGACACATCCGCGACAATTCACCATTCACCACACAGAAACCGAAACCAAAGCACAAAGCAAGTGAATTCACAAACAAACGCATGGCCAGCATCAAAATCTTCGATTTCTCCGACAAGGCCAACATCGATTTCGATTACTCCGACGAGTGTCCGTTTCGCCCCGCCAAAGACATGTCATTGTCCATCGATGACCTAACCCTAGGCACGACACCCTATACCATCGCCGACATCGTCCGTACCTACAATTTCAAGTCCTCCGAAGAGGATCGAGTTCTCAAAGGAGCCCTCGATTGCCCCATCGAGTTGAAAGACAAGGAAATCAAACCCGATTCCGACATCATCGCCATCCTCAGAAGGTCCGAAACCCTAAGGTCCGAAACCCTAACCGGGCAACTCCCTCCCTTGTCCCCGGGAAAAGGCCTCATCCTCTCACCTCCTTGTATACGCTGGTGA
Protein sequence

>Msa1414550

GNAEESLGGEWSEFVRDRDLQEDDKLIFDLEDPPTKMYVRHIRDNSPFTTQKPKPKHKASEFTNKRMASIKIFDFSDKANIDFDYSDECPFRPAKDMSLSIDDLTLGTTPYTIADIVRTYNFKSSEEDRVLKGALDCPIELKDKEIKPDSDIIAILRRSETLRSETLTGQLPPLSPGKGLILSPPCIRW*