AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415190 MtrunA17_Chr4g0069391 74.937 395 44 5 1 340 1 395 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415190 AT1G29940.1 54.622 357 121 2 24 340 15 370 2.17e-128 395

Find 67 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGTGCAAGGCTTGGTTTC+TGG 0.195259 tig0024176:+78192 Msa1415190:CDS
TTTCTGAGATCATGCATAAT+TGG 0.229170 tig0024176:-78752 None:intergenic
CCTCGAGTATTCAAGCTATC+AGG 0.238751 tig0024176:-79512 None:intergenic
CAAGCAAAACTCACATATTC+AGG 0.244547 tig0024176:+75357 Msa1415190:CDS
GAGTTTGATGGATTTGAAAA+TGG 0.259640 tig0024176:-74990 None:intergenic
GTAACAAACCTGTAGCATTA+TGG 0.280077 tig0024176:-75460 None:intergenic
AACTTTATTACCTTCGTAAT+GGG 0.326822 tig0024176:+78171 Msa1415190:CDS
GAACTACATATTTGTTCATC+TGG 0.335336 tig0024176:+79236 Msa1415190:CDS
CAAGGAAGAGGCATCGGAAA+TGG 0.360830 tig0024176:+76845 Msa1415190:CDS
TAACAAACCTGTAGCATTAT+GGG 0.363680 tig0024176:-75459 None:intergenic
TCAAATTTACATAAATTTCT+CGG 0.373209 tig0024176:-78502 None:intergenic
TTCCGATGCCTCTTCCTTGT+AGG 0.374406 tig0024176:-76841 None:intergenic
TTCGATCATTTGATTGAAGC+TGG 0.393885 tig0024176:+74959 Msa1415190:CDS
GGTTCACGAGTTTCTTTGTC+TGG 0.403347 tig0024176:-74848 None:intergenic
CTTCAATGTCTAGAATATAT+TGG 0.405292 tig0024176:+78641 Msa1415190:CDS
TCATTTGATTGAAGCTGGAT+TGG 0.413717 tig0024176:+74964 Msa1415190:CDS
ATGCACAACGACGAGTTTGA+TGG 0.421460 tig0024176:-75002 None:intergenic
GAAAAGGGAAAGGGCGTTGT+TGG 0.421686 tig0024176:+78548 Msa1415190:CDS
TGTTTAGTCAGATTATTGAT+AGG 0.423915 tig0024176:-74869 None:intergenic
AAACTTTATTACCTTCGTAA+TGG 0.425499 tig0024176:+78170 Msa1415190:CDS
TCCAGTTACTTCATCGTGAA+TGG 0.427058 tig0024176:+77134 Msa1415190:intron
TTATAATGAAAAGTATGAAA+AGG 0.451296 tig0024176:+78532 Msa1415190:CDS
GCAGTTTCCCATAATGCTAC+AGG 0.456087 tig0024176:+75452 Msa1415190:CDS
TGCCCTTTCACCAACAAGCT+GGG 0.456100 tig0024176:-78573 None:intergenic
TATAATGAAAAGTATGAAAA+GGG 0.463600 tig0024176:+78533 Msa1415190:CDS
TTGCCCTTTCACCAACAAGC+TGG 0.464006 tig0024176:-78574 None:intergenic
GTTGTTGGGACCCAGCTTGT+TGG 0.469302 tig0024176:+78563 Msa1415190:CDS
GACCCAGCTTGTTGGTGAAA+GGG 0.472523 tig0024176:+78571 Msa1415190:CDS
TGAGATCATGCATAATTGGT+TGG 0.473528 tig0024176:-78748 None:intergenic
AAGGAAGAGGCATCGGAAAT+GGG 0.483388 tig0024176:+76846 Msa1415190:CDS
GACCTATAATTCTATCAAAA+CGG 0.485327 tig0024176:+77174 Msa1415190:CDS
TTCAAGCTATCAGGGTTATC+CGG 0.486032 tig0024176:-79503 None:intergenic
AAAAGGGAAAGGGCGTTGTT+GGG 0.486687 tig0024176:+78549 Msa1415190:CDS
GGACCCAGCTTGTTGGTGAA+AGG 0.490200 tig0024176:+78570 Msa1415190:CDS
GAAAAGTATGAAAAGGGAAA+GGG 0.494371 tig0024176:+78539 Msa1415190:CDS
TGAAAAGTATGAAAAGGGAA+AGG 0.521308 tig0024176:+78538 Msa1415190:CDS
CGTAATGGGAGTGCAAGGCT+TGG 0.527022 tig0024176:+78185 Msa1415190:CDS
AAGTTCATTTAGTGAGAGGC+GGG 0.528625 tig0024176:+77419 Msa1415190:CDS
AAGAGGCATCGGAAATGGGC+GGG 0.530360 tig0024176:+76850 Msa1415190:CDS
CTCGAGTATTCAAGCTATCA+GGG 0.546538 tig0024176:-79511 None:intergenic
TCGGTCAGTGGTGTCAATGA+GGG 0.548017 tig0024176:-78483 None:intergenic
TACATAAATTTCTCGGTCAG+TGG 0.557275 tig0024176:-78495 None:intergenic
TCGGAAACTTGTGTCCTACA+AGG 0.566048 tig0024176:+76827 Msa1415190:CDS
CTCGGTCAGTGGTGTCAATG+AGG 0.567179 tig0024176:-78484 None:intergenic
ACCTTCGTAATGGGAGTGCA+AGG 0.573683 tig0024176:+78180 Msa1415190:CDS
TGATCGAAGGATTCGATGTG+TGG 0.574232 tig0024176:-74944 None:intergenic
GTCCTACAAGGAAGAGGCAT+CGG 0.576712 tig0024176:+76839 Msa1415190:CDS
TGCGAAGTTCATTTAGTGAG+AGG 0.589204 tig0024176:+77415 Msa1415190:CDS
ACTTGTGTCCTACAAGGAAG+AGG 0.591750 tig0024176:+76833 Msa1415190:CDS
AAGAGAGTACATGCTTCCTG+TGG 0.595392 tig0024176:+78346 Msa1415190:CDS
ACTTGAGAGACTTTCCTCCT+CGG 0.599985 tig0024176:+76808 Msa1415190:CDS
CCTGATAGCTTGAATACTCG+AGG 0.604738 tig0024176:+79512 Msa1415190:CDS
GAAGAGGCATCGGAAATGGG+CGG 0.605929 tig0024176:+76849 Msa1415190:CDS
TCATTTAGTGAGAGGCGGGA+AGG 0.606069 tig0024176:+77423 Msa1415190:CDS
AGCTTCAATCAAATGATCGA+AGG 0.606444 tig0024176:-74957 None:intergenic
TGTAGATCAGACATCAGTGC+CGG 0.608947 tig0024176:+79484 Msa1415190:CDS
GAAGTTCATTTAGTGAGAGG+CGG 0.614172 tig0024176:+77418 Msa1415190:CDS
GAACTTCGCACTGTACTCAT+CGG 0.618330 tig0024176:-77402 None:intergenic
TTGTAGGACACAAGTTTCCG+AGG 0.620494 tig0024176:-76825 None:intergenic
TAGGTCGAATACATCTCTCA+AGG 0.626077 tig0024176:-77157 None:intergenic
AAGCAAAACTCACATATTCA+GGG 0.627750 tig0024176:+75358 Msa1415190:CDS
ACCTTCAAAAGAATGCCCAC+AGG 0.639312 tig0024176:-78362 None:intergenic
AGAGAGTACATGCTTCCTGT+GGG 0.642359 tig0024176:+78347 Msa1415190:CDS
ATAAAGTTTCACTGTTAACG+AGG 0.669717 tig0024176:-78156 None:intergenic
GCCTTGCACTCCCATTACGA+AGG 0.680942 tig0024176:-78181 None:intergenic
TAGGACACAAGTTTCCGAGG+AGG 0.715281 tig0024176:-76822 None:intergenic
CAAAACTCACATATTCAGGG+AGG 0.739537 tig0024176:+75361 Msa1415190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATTAAGTTATTG+AGG + tig0024176:75889-75908 Msa1415190:intron 10.0%
!!! TTTTTTAATTAAGTTATTGA+GGG + tig0024176:75890-75909 Msa1415190:intron 10.0%
!!! TAAATTCTAAATTTTTATTG+GGG - tig0024176:77622-77641 None:intergenic 10.0%
!!! CTAAATTCTAAATTTTTATT+GGG - tig0024176:77623-77642 None:intergenic 10.0%
!!! ACTAAATTCTAAATTTTTAT+TGG - tig0024176:77624-77643 None:intergenic 10.0%
!!! AATAAATATTCTTAACATTT+TGG - tig0024176:78040-78059 None:intergenic 10.0%
!!! TAATTTTTTATTTGAAATTC+AGG + tig0024176:78716-78735 Msa1415190:intron 10.0%
!! AAAAATTTAAATGAAGAAAA+AGG + tig0024176:80053-80072 Msa1415190:intron 10.0%
!! AAAATTTAAATGAAGAAAAA+GGG + tig0024176:80054-80073 Msa1415190:intron 10.0%
!! ATTACATATAATTAGATATT+TGG + tig0024176:81286-81305 Msa1415190:intron 10.0%
!! AAATTATTGAACTGAAAAAA+AGG - tig0024176:75057-75076 None:intergenic 15.0%
!!! TTAAGAGAAACTTTTAATTT+TGG + tig0024176:75429-75448 Msa1415190:CDS 15.0%
!!! TAAGAGAAACTTTTAATTTT+GGG + tig0024176:75430-75449 Msa1415190:CDS 15.0%
!!! GTTATATTGTTTGAATTTTT+TGG + tig0024176:75640-75659 Msa1415190:intron 15.0%
!! AAAATTATAGAATATTGTCT+TGG + tig0024176:76182-76201 Msa1415190:intron 15.0%
!! AAATTATAGAATATTGTCTT+GGG + tig0024176:76183-76202 Msa1415190:intron 15.0%
!! ATCAATTATTATCAGTTATA+AGG - tig0024176:76612-76631 None:intergenic 15.0%
!! TTAGAATTTAGTATAAACAT+AGG + tig0024176:77632-77651 Msa1415190:intron 15.0%
!! TCAAATTTACATAAATTTCT+CGG - tig0024176:78505-78524 None:intergenic 15.0%
!!! TTATAATGAAAAGTATGAAA+AGG + tig0024176:78532-78551 Msa1415190:CDS 15.0%
!!! TATAATGAAAAGTATGAAAA+GGG + tig0024176:78533-78552 Msa1415190:CDS 15.0%
!! ATTATATGACATGATAAAAT+AGG - tig0024176:78800-78819 None:intergenic 15.0%
!!! TATTTTATCATGTCATATAA+TGG + tig0024176:78799-78818 Msa1415190:intron 15.0%
!!! ATTTTATCATGTCATATAAT+GGG + tig0024176:78800-78819 Msa1415190:intron 15.0%
!!! GTTTTTCAAAATATAATAAG+CGG + tig0024176:79066-79085 Msa1415190:intron 15.0%
!! TCATAAAACTATTAATTGAA+GGG - tig0024176:80022-80041 None:intergenic 15.0%
!! TTCATAAAACTATTAATTGA+AGG - tig0024176:80023-80042 None:intergenic 15.0%
!!! ATAAAATATTGATAGTTGTA+CGG + tig0024176:81251-81270 Msa1415190:intron 15.0%
!!! ATTAGGATTAAGAATTTTAA+TGG + tig0024176:81421-81440 Msa1415190:intron 15.0%
!!! TTAGGATTAAGAATTTTAAT+GGG + tig0024176:81422-81441 Msa1415190:intron 15.0%
!!! AAAGGATATTAATGAGTTTT+TGG - tig0024176:75039-75058 None:intergenic 20.0%
!!! ACATTTACTTTTGAAATTTC+CGG + tig0024176:75494-75513 Msa1415190:intron 20.0%
!! ATACTTACTTTGCATAATAA+TGG + tig0024176:75570-75589 Msa1415190:intron 20.0%
!! AAAATGCAAACAAATCATTA+AGG - tig0024176:76585-76604 None:intergenic 20.0%
!!! ATTATATGTCACTTTTACAA+TGG - tig0024176:76707-76726 None:intergenic 20.0%
!! TATCTATCTTCGAAAATATA+TGG + tig0024176:76738-76757 Msa1415190:intron 20.0%
!! AAAAAATAATTGATGAGCAA+TGG - tig0024176:77360-77379 None:intergenic 20.0%
!! TTTATTGGGGAATTATAATT+GGG - tig0024176:77609-77628 None:intergenic 20.0%
!!! TTTTATTGGGGAATTATAAT+TGG - tig0024176:77610-77629 None:intergenic 20.0%
!! AAATGAAAAAAACTATGCAT+AGG - tig0024176:77867-77886 None:intergenic 20.0%
!! ATAAAGTCTTGAAGAAAAAA+AGG - tig0024176:78101-78120 None:intergenic 20.0%
!! ATCAAAATATCACATAGAAA+AGG - tig0024176:79309-79328 None:intergenic 20.0%
!! TCTGATTACAATTTATCTTA+AGG + tig0024176:79557-79576 Msa1415190:intron 20.0%
!!! TTCTTACTACTACTTTTTTT+GGG - tig0024176:79647-79666 None:intergenic 20.0%
!!! TTTTTGTTTAAATTCGAGTA+TGG - tig0024176:79920-79939 None:intergenic 20.0%
!! AAACAAAAAACAAGTCATAT+TGG + tig0024176:79931-79950 Msa1415190:intron 20.0%
!!! TTTCCCAAATTTGTTATATT+TGG + tig0024176:80136-80155 Msa1415190:intron 20.0%
!!! CAAAATGAAAGATTAAGTTT+TGG - tig0024176:80304-80323 None:intergenic 20.0%
!!! AACTTAATCTTTCATTTTGA+TGG + tig0024176:80305-80324 Msa1415190:intron 20.0%
!!! ACTTAATCTTTCATTTTGAT+GGG + tig0024176:80306-80325 Msa1415190:intron 20.0%
!! AACTGTATGTATATGTTTAT+TGG + tig0024176:80859-80878 Msa1415190:intron 20.0%
!! AAGAATGTACTTATCATTTA+AGG - tig0024176:80988-81007 None:intergenic 20.0%
!! TATGATTAGAAAATAACTTC+TGG + tig0024176:81448-81467 Msa1415190:intron 20.0%
! TGTTTAGTCAGATTATTGAT+AGG - tig0024176:74872-74891 None:intergenic 25.0%
! TACTGTGTTTATTCTTAACT+TGG + tig0024176:75124-75143 Msa1415190:intron 25.0%
!! AAATTGAAACTTGCTTCAAA+CGG - tig0024176:75231-75250 None:intergenic 25.0%
!!! GTGTGTTTTAAATATGATGA+CGG + tig0024176:75396-75415 Msa1415190:CDS 25.0%
! ACTTATGTGTATAGTCAAAT+TGG + tig0024176:75530-75549 Msa1415190:intron 25.0%
! AAATTTACCATTTCGACTAT+TGG + tig0024176:75606-75625 Msa1415190:intron 25.0%
! GAAAAATAGTTATCATGCTT+AGG + tig0024176:75808-75827 Msa1415190:intron 25.0%
! TAGAAATGATGATATTGTGA+AGG + tig0024176:76082-76101 Msa1415190:intron 25.0%
! AGATATTGAGAAATAGATAG+AGG + tig0024176:76264-76283 Msa1415190:intron 25.0%
!! AATCAACAAAAGAGTTCTAA+CGG + tig0024176:76963-76982 Msa1415190:intron 25.0%
! GACCTATAATTCTATCAAAA+CGG + tig0024176:77174-77193 Msa1415190:CDS 25.0%
!!! TTCCGTTTTGATAGAATTAT+AGG - tig0024176:77179-77198 None:intergenic 25.0%
!!! GAAATTTGTTATACTAGTCT+AGG + tig0024176:77288-77307 Msa1415190:intron 25.0%
! TTAAAATCCATTATCAACCT+TGG - tig0024176:77328-77347 None:intergenic 25.0%
!!! GCTCATCAATTATTTTTTTC+TGG + tig0024176:77362-77381 Msa1415190:intron 25.0%
! AATCAATAACACTGAATTCA+AGG - tig0024176:77677-77696 None:intergenic 25.0%
! AAATGAAAAACACTATGCAT+GGG - tig0024176:77808-77827 None:intergenic 25.0%
! CATAGGATGTATAATTAGAT+TGG - tig0024176:77850-77869 None:intergenic 25.0%
! TTGTCCAATTTGACTAAAAT+TGG + tig0024176:77885-77904 Msa1415190:intron 25.0%
!!! TCTTCCAATTTTAGTCAAAT+TGG - tig0024176:77892-77911 None:intergenic 25.0%
! CAGCATAAACTAATTTCTAT+AGG - tig0024176:78014-78033 None:intergenic 25.0%
! ACTTTATATTTCACTTGTTC+AGG + tig0024176:78114-78133 Msa1415190:intron 25.0%
! AAACTTTATTACCTTCGTAA+TGG + tig0024176:78170-78189 Msa1415190:CDS 25.0%
! AACTTTATTACCTTCGTAAT+GGG + tig0024176:78171-78190 Msa1415190:CDS 25.0%
!!! ACTTTTTTAGGCTAAAATGA+GGG - tig0024176:78266-78285 None:intergenic 25.0%
!!! AAAATCATAGCCACTTTTTT+AGG - tig0024176:78278-78297 None:intergenic 25.0%
!! AAAAAAGTGGCTATGATTTT+AGG + tig0024176:78278-78297 Msa1415190:intron 25.0%
!! TCATCATAATATCATTTTGC+AGG + tig0024176:78315-78334 Msa1415190:intron 25.0%
! TTCTTCAAATACTTTGTAAC+AGG + tig0024176:78460-78479 Msa1415190:intron 25.0%
!! CTTCAATGTCTAGAATATAT+TGG + tig0024176:78641-78660 Msa1415190:CDS 25.0%
! GAATTGATCAAGAAAACAAA+GGG - tig0024176:78682-78701 None:intergenic 25.0%
! TGAATTGATCAAGAAAACAA+AGG - tig0024176:78683-78702 None:intergenic 25.0%
!!! TGTAATTTTTTAAGAGGGAA+GGG - tig0024176:78865-78884 None:intergenic 25.0%
! ATTTAAATCTCAGGAGAAAT+CGG - tig0024176:78890-78909 None:intergenic 25.0%
!! TTACCCTTCATTAATTTGAT+TGG + tig0024176:79124-79143 Msa1415190:intron 25.0%
! TCTCCAATCAAATTAATGAA+GGG - tig0024176:79130-79149 None:intergenic 25.0%
! TTCTCCAATCAAATTAATGA+AGG - tig0024176:79131-79150 None:intergenic 25.0%
!! CATTAATTTGATTGGAGAAA+AGG + tig0024176:79132-79151 Msa1415190:intron 25.0%
! TAGTCAGAATTCAGAAATAA+GGG - tig0024176:79167-79186 None:intergenic 25.0%
! TTAGTCAGAATTCAGAAATA+AGG - tig0024176:79168-79187 None:intergenic 25.0%
!!! TATGAGTTCCTTTATTTTCT+AGG + tig0024176:79194-79213 Msa1415190:intron 25.0%
!!! GTTCTTACTACTACTTTTTT+TGG - tig0024176:79648-79667 None:intergenic 25.0%
! TTCAATTGTATTTCAGTATC+AGG + tig0024176:79697-79716 Msa1415190:intron 25.0%
! GTTCAAACCAAAATTCTAAA+TGG - tig0024176:79805-79824 None:intergenic 25.0%
!!! TATTAATTGAAGGGTACTTT+TGG - tig0024176:80013-80032 None:intergenic 25.0%
! TATTGAACATTCAAATTCTG+TGG - tig0024176:80266-80285 None:intergenic 25.0%
!! TTACAAGATTTTCACTGTTA+GGG - tig0024176:80465-80484 None:intergenic 25.0%
!! TTTACAAGATTTTCACTGTT+AGG - tig0024176:80466-80485 None:intergenic 25.0%
! AAAATCCTTATACAAAGAAG+TGG - tig0024176:80589-80608 None:intergenic 25.0%
! ACTTTATAACAGCAGTTATT+AGG + tig0024176:81404-81423 Msa1415190:intron 25.0%
!! GAGTTTGATGGATTTGAAAA+TGG - tig0024176:74993-75012 None:intergenic 30.0%
!!! ATGAGTTTTTGGAATGTTGT+AGG - tig0024176:75028-75047 None:intergenic 30.0%
AAGCAAAACTCACATATTCA+GGG + tig0024176:75358-75377 Msa1415190:CDS 30.0%
!!! TGTTTTAAATATGATGACGG+TGG + tig0024176:75399-75418 Msa1415190:CDS 30.0%
!!! GTTTTAAATATGATGACGGT+GGG + tig0024176:75400-75419 Msa1415190:CDS 30.0%
!!! TTTTAAATATGATGACGGTG+GGG + tig0024176:75401-75420 Msa1415190:CDS 30.0%
TAACAAACCTGTAGCATTAT+GGG - tig0024176:75462-75481 None:intergenic 30.0%
AATCTTCTCATCACAACAAA+TGG - tig0024176:75719-75738 None:intergenic 30.0%
AGATATTCTGAGTGTGATAT+GGG + tig0024176:75783-75802 Msa1415190:intron 30.0%
TGTTGTATGTAAACGAATGT+TGG + tig0024176:75861-75880 Msa1415190:intron 30.0%
GTTACTTGAAGTAGCAAAAT+AGG + tig0024176:75951-75970 Msa1415190:intron 30.0%
AAGATCAATGTAGAGTTGTT+TGG - tig0024176:75990-76009 None:intergenic 30.0%
ATTGATCTTACGAGCTTATA+TGG + tig0024176:76001-76020 Msa1415190:intron 30.0%
TTATAGAATATTGTCTTGGG+TGG + tig0024176:76186-76205 Msa1415190:intron 30.0%
! CTATTTCTCAATATCTGTCT+GGG - tig0024176:76260-76279 None:intergenic 30.0%
! TCTATTTCTCAATATCTGTC+TGG - tig0024176:76261-76280 None:intergenic 30.0%
AGAAATAGATAGAGGTAAAC+TGG + tig0024176:76272-76291 Msa1415190:intron 30.0%
CTAAATCTCTCTTAATGGTT+TGG - tig0024176:76325-76344 None:intergenic 30.0%
! CTGTTCTAAATCTCTCTTAA+TGG - tig0024176:76330-76349 None:intergenic 30.0%
! TTAAGAGAGATTTAGAACAG+AGG + tig0024176:76330-76349 Msa1415190:intron 30.0%
! TAAGAGAGATTTAGAACAGA+GGG + tig0024176:76331-76350 Msa1415190:intron 30.0%
! TTCTAATGAAGTAAAAGTGC+TGG + tig0024176:76671-76690 Msa1415190:intron 30.0%
!! TCTAATGAAGTAAAAGTGCT+GGG + tig0024176:76672-76691 Msa1415190:intron 30.0%
TTATCTAATCCAACATCAGT+AGG - tig0024176:76911-76930 None:intergenic 30.0%
! ATTCAGAATTGATTCACTGA+TGG - tig0024176:76946-76965 None:intergenic 30.0%
GTCAGCTACAGAAAATAATT+AGG - tig0024176:77076-77095 None:intergenic 30.0%
ACTCAAACAGAAACTAATCT+AGG - tig0024176:77267-77286 None:intergenic 30.0%
!! CTGATAAAGCAGTTGTTTTA+AGG + tig0024176:77451-77470 Msa1415190:CDS 30.0%
! GAATTCAGTGTTATTGATTG+CGG + tig0024176:77678-77697 Msa1415190:intron 30.0%
AATTGTGGCTTAAAAATAGC+GGG - tig0024176:77722-77741 None:intergenic 30.0%
GAATTGTGGCTTAAAAATAG+CGG - tig0024176:77723-77742 None:intergenic 30.0%
CAAATGAAAAACACTATGCA+TGG - tig0024176:77809-77828 None:intergenic 30.0%
! CATGCATAGTGTTTTTCATT+TGG + tig0024176:77807-77826 Msa1415190:intron 30.0%
TTGTGTAGTATATGTTTGCA+AGG + tig0024176:77962-77981 Msa1415190:intron 30.0%
ATAAAGTTTCACTGTTAACG+AGG - tig0024176:78159-78178 None:intergenic 30.0%
!!! CACTTTTTTAGGCTAAAATG+AGG - tig0024176:78267-78286 None:intergenic 30.0%
!! CTCATTTTAGCCTAAAAAAG+TGG + tig0024176:78265-78284 Msa1415190:intron 30.0%
! ATATCATTTTGCAGGATACA+CGG + tig0024176:78323-78342 Msa1415190:intron 30.0%
TGAAGTTCAGTTGTATAACA+TGG + tig0024176:78437-78456 Msa1415190:intron 30.0%
! TGAAAAGTATGAAAAGGGAA+AGG + tig0024176:78538-78557 Msa1415190:CDS 30.0%
! GAAAAGTATGAAAAGGGAAA+GGG + tig0024176:78539-78558 Msa1415190:CDS 30.0%
!! TTTCTGAGATCATGCATAAT+TGG - tig0024176:78755-78774 None:intergenic 30.0%
!!! GTGTAATTTTTTAAGAGGGA+AGG - tig0024176:78866-78885 None:intergenic 30.0%
!!! CGGAGTGTAATTTTTTAAGA+GGG - tig0024176:78870-78889 None:intergenic 30.0%
!!! TCGGAGTGTAATTTTTTAAG+AGG - tig0024176:78871-78890 None:intergenic 30.0%
GTGAAGCATATTTAAATCTC+AGG - tig0024176:78899-78918 None:intergenic 30.0%
AAGATAAGAAGCTTTGCTTT+GGG - tig0024176:78973-78992 None:intergenic 30.0%
GAACTACATATTTGTTCATC+TGG + tig0024176:79236-79255 Msa1415190:CDS 30.0%
! TTATGGGCAACTATTTTACT+TGG + tig0024176:79353-79372 Msa1415190:intron 30.0%
!!! AGGTTTATTTTTTACTCCCT+GGG + tig0024176:79532-79551 Msa1415190:intron 30.0%
!! TCTGGTTCCATTTAGAATTT+TGG + tig0024176:79795-79814 Msa1415190:intron 30.0%
GTTTGAACTCTATTTAAGCA+TGG + tig0024176:79817-79836 Msa1415190:intron 30.0%
AACTCTATTTAAGCATGGAA+TGG + tig0024176:79822-79841 Msa1415190:intron 30.0%
ACTCTATTTAAGCATGGAAT+GGG + tig0024176:79823-79842 Msa1415190:intron 30.0%
GGAACTTGATCAATTCAAAA+AGG - tig0024176:79881-79900 None:intergenic 30.0%
TATGGAGGGAATATGTAATA+AGG - tig0024176:79902-79921 None:intergenic 30.0%
TGTTTAAATTCGAGTATGGA+GGG - tig0024176:79916-79935 None:intergenic 30.0%
TTGTTTAAATTCGAGTATGG+AGG - tig0024176:79917-79936 None:intergenic 30.0%
CAAAAAACAAGTCATATTGG+TGG + tig0024176:79934-79953 Msa1415190:intron 30.0%
GGGCCAAATATAACAAATTT+GGG - tig0024176:80142-80161 None:intergenic 30.0%
AAGATATGTAGTAGAAACTG+TGG - tig0024176:80225-80244 None:intergenic 30.0%
CAAATTCTGTGGTTAAAAAC+TGG - tig0024176:80255-80274 None:intergenic 30.0%
!! TTAAGTTTTGGCAAATGTTG+TGG - tig0024176:80292-80311 None:intergenic 30.0%
AATGTGTTACCCAATACTAT+GGG + tig0024176:80488-80507 Msa1415190:intron 30.0%
! GTTTTCCACTTCTTTGTATA+AGG + tig0024176:80581-80600 Msa1415190:intron 30.0%
! CCTCTAAAAAAACTGTGTAT+TGG - tig0024176:80663-80682 None:intergenic 30.0%
!!! CCAATACACAGTTTTTTTAG+AGG + tig0024176:80660-80679 Msa1415190:intron 30.0%
! ATGGAGATAAGTTTGATTTC+AGG + tig0024176:80836-80855 Msa1415190:intron 30.0%
TAGAACAATATGAGAATGCA+AGG - tig0024176:80904-80923 None:intergenic 30.0%
TTGGAAAAAAATCATGCAAG+CGG + tig0024176:81078-81097 Msa1415190:intron 30.0%
! ATTGAAAGTATGTTGACAAC+TGG + tig0024176:81114-81133 Msa1415190:intron 30.0%
AGAAAAAAATTATCAAGCGC+TGG - tig0024176:81188-81207 None:intergenic 30.0%
! TTTTCTCAGTATGTATTTGC+TGG + tig0024176:81202-81221 Msa1415190:intron 30.0%
TTTCTCAGTATGTATTTGCT+GGG + tig0024176:81203-81222 Msa1415190:intron 30.0%
ACTTATGAAACAGAGACAAT+CGG - tig0024176:81231-81250 None:intergenic 30.0%
TTTCCTAATTAACAACCAGA+AGG - tig0024176:81370-81389 None:intergenic 30.0%
AGCTTCAATCAAATGATCGA+AGG - tig0024176:74960-74979 None:intergenic 35.0%
TTCGATCATTTGATTGAAGC+TGG + tig0024176:74959-74978 Msa1415190:CDS 35.0%
TCATTTGATTGAAGCTGGAT+TGG + tig0024176:74964-74983 Msa1415190:CDS 35.0%
AACTTGGATCTTACTTACGT+TGG + tig0024176:75140-75159 Msa1415190:intron 35.0%
CAAGCAAAACTCACATATTC+AGG + tig0024176:75357-75376 Msa1415190:CDS 35.0%
GTAACAAACCTGTAGCATTA+TGG - tig0024176:75463-75482 None:intergenic 35.0%
ATAAGTGCATTCTCATAAGC+CGG - tig0024176:75516-75535 None:intergenic 35.0%
TTGTTGTGATGAGAAGATTG+AGG + tig0024176:75720-75739 Msa1415190:intron 35.0%
TGTTGTGATGAGAAGATTGA+GGG + tig0024176:75721-75740 Msa1415190:intron 35.0%
TCCAAGTAGAGTGAATGAAA+TGG + tig0024176:75760-75779 Msa1415190:intron 35.0%
TCCATTTCATTCACTCTACT+TGG - tig0024176:75764-75783 None:intergenic 35.0%
GAGATATTCTGAGTGTGATA+TGG + tig0024176:75782-75801 Msa1415190:intron 35.0%
TATGTAAACGAATGTTGGAG+AGG + tig0024176:75866-75885 Msa1415190:intron 35.0%
TAAGACACCAAGACTCTTTA+TGG - tig0024176:76064-76083 None:intergenic 35.0%
TGATGATATTGTGAAGGATG+AGG + tig0024176:76088-76107 Msa1415190:intron 35.0%
GATGATATTGTGAAGGATGA+GGG + tig0024176:76089-76108 Msa1415190:intron 35.0%
! TATAATTTTCCCAACCACAG+GGG - tig0024176:76171-76190 None:intergenic 35.0%
! CTATAATTTTCCCAACCACA+GGG - tig0024176:76172-76191 None:intergenic 35.0%
! TCTATAATTTTCCCAACCAC+AGG - tig0024176:76173-76192 None:intergenic 35.0%
AATATTGTCTTGGGTGGTTT+GGG + tig0024176:76192-76211 Msa1415190:intron 35.0%
AGATAGAGGTAAACTGGTAA+AGG + tig0024176:76278-76297 Msa1415190:intron 35.0%
GATAGAGGTAAACTGGTAAA+GGG + tig0024176:76279-76298 Msa1415190:intron 35.0%
!! TCTCTTAATGGTTTGGTCTA+CGG - tig0024176:76318-76337 None:intergenic 35.0%
AAGTTTAAGTGGCACAAACA+TGG - tig0024176:76888-76907 None:intergenic 35.0%
ACATCAGTAGGAAGTTTAAG+TGG - tig0024176:76899-76918 None:intergenic 35.0%
CTTAAACTTCCTACTGATGT+TGG + tig0024176:76899-76918 Msa1415190:intron 35.0%
!! ATGTTGACCAAGGTTGATAA+TGG + tig0024176:77318-77337 Msa1415190:intron 35.0%
! TTAAGGTTTGTTCTATCTGC+TGG + tig0024176:77468-77487 Msa1415190:intron 35.0%
TGTGGTCAATTAGTGAAAGA+TGG - tig0024176:77770-77789 None:intergenic 35.0%
GCAATTGTACTTGATATGCA+TGG + tig0024176:77926-77945 Msa1415190:intron 35.0%
GCAAGTAGTATTCAAAATCG+AGG - tig0024176:78079-78098 None:intergenic 35.0%
CAAGCATGGGAAAAATAAAG+GGG - tig0024176:78413-78432 None:intergenic 35.0%
CCAAGCATGGGAAAAATAAA+GGG - tig0024176:78414-78433 None:intergenic 35.0%
ACCAAGCATGGGAAAAATAA+AGG - tig0024176:78415-78434 None:intergenic 35.0%
TGAACTTCAAAACCAAGCAT+GGG - tig0024176:78426-78445 None:intergenic 35.0%
TACATAAATTTCTCGGTCAG+TGG - tig0024176:78498-78517 None:intergenic 35.0%
TGAGATCATGCATAATTGGT+TGG - tig0024176:78751-78770 None:intergenic 35.0%
!!! AATTTTTTAAGAGGGAAGGG+TGG - tig0024176:78862-78881 None:intergenic 35.0%
AGATAAGAAGCTTTGCTTTG+GGG - tig0024176:78972-78991 None:intergenic 35.0%
GAAGATAAGAAGCTTTGCTT+TGG - tig0024176:78974-78993 None:intergenic 35.0%
AGATAAAATGGGTCACACTT+TGG - tig0024176:79032-79051 None:intergenic 35.0%
! TGTGACCCATTTTATCTCAA+GGG + tig0024176:79035-79054 Msa1415190:intron 35.0%
ACTACCCCTTGAGATAAAAT+GGG - tig0024176:79043-79062 None:intergenic 35.0%
TATAATAAGCGGCAAAACCT+TGG + tig0024176:79077-79096 Msa1415190:intron 35.0%
ATCAGCGACCTAGAAAATAA+AGG - tig0024176:79205-79224 None:intergenic 35.0%
!! TCGCACTATGTTGTTTCTTA+TGG + tig0024176:79336-79355 Msa1415190:intron 35.0%
!! CGCACTATGTTGTTTCTTAT+GGG + tig0024176:79337-79356 Msa1415190:intron 35.0%
! GCAACTATTTTACTTGGTAC+AGG + tig0024176:79359-79378 Msa1415190:intron 35.0%
AAGGTCAAATACTAGACTGT+GGG - tig0024176:79411-79430 None:intergenic 35.0%
TCTGCAACATGAATCTGAAA+GGG - tig0024176:79451-79470 None:intergenic 35.0%
TTCTGCAACATGAATCTGAA+AGG - tig0024176:79452-79471 None:intergenic 35.0%
!!! GAGGTTTATTTTTTACTCCC+TGG + tig0024176:79531-79550 Msa1415190:intron 35.0%
AAATTGTAATCAGATGCCCA+GGG - tig0024176:79551-79570 None:intergenic 35.0%
TAAATTGTAATCAGATGCCC+AGG - tig0024176:79552-79571 None:intergenic 35.0%
ATTGTATTTCAGTATCAGGC+TGG + tig0024176:79701-79720 Msa1415190:intron 35.0%
! CAGAGAAAAAGTACAAGCAT+AGG - tig0024176:79779-79798 None:intergenic 35.0%
!!! CTATGCTTGTACTTTTTCTC+TGG + tig0024176:79777-79796 Msa1415190:intron 35.0%
GGGGCCAAATATAACAAATT+TGG - tig0024176:80143-80162 None:intergenic 35.0%
! ATGGGTTATTGAAAAGTGAC+GGG - tig0024176:80163-80182 None:intergenic 35.0%
! CATGGGTTATTGAAAAGTGA+CGG - tig0024176:80164-80183 None:intergenic 35.0%
GACGTTAGTACTTCAAACAT+GGG - tig0024176:80181-80200 None:intergenic 35.0%
TGACGTTAGTACTTCAAACA+TGG - tig0024176:80182-80201 None:intergenic 35.0%
CAAAGTGTAGTAGTCAATAG+CGG + tig0024176:80330-80349 Msa1415190:intron 35.0%
GAGTTTGACGTAGAAACTAA+GGG - tig0024176:80376-80395 None:intergenic 35.0%
TACTCAAAATCGCAATGCAA+TGG - tig0024176:80398-80417 None:intergenic 35.0%
CAATGTGTTACCCAATACTA+TGG + tig0024176:80487-80506 Msa1415190:intron 35.0%
TACAAAGAAGTGGAAAACAG+AGG - tig0024176:80579-80598 None:intergenic 35.0%
GAGCTGTATTGCATAAACTT+TGG + tig0024176:80619-80638 Msa1415190:intron 35.0%
!! TTTTAGAGGCAACAATACAC+AGG + tig0024176:80674-80693 Msa1415190:intron 35.0%
CTTCTTGACGAGATTAAAAG+AGG + tig0024176:80796-80815 Msa1415190:intron 35.0%
TTGACGAGATTAAAAGAGGA+GGG + tig0024176:80800-80819 Msa1415190:intron 35.0%
ATTAAAAGAGGAGGGAAGAT+TGG + tig0024176:80808-80827 Msa1415190:intron 35.0%
! GTCTGTAAATTTTTCCCACT+CGG + tig0024176:81027-81046 Msa1415190:intron 35.0%
TAATCACGTCAAGAAAGTCT+TGG + tig0024176:81059-81078 Msa1415190:intron 35.0%
AAAGTATGTTGACAACTGGA+AGG + tig0024176:81118-81137 Msa1415190:intron 35.0%
TTTGGCATATTCCTTCATGA+TGG + tig0024176:81304-81323 Msa1415190:intron 35.0%
CTGACTCATTTATAGACCAT+TGG - tig0024176:81346-81365 None:intergenic 35.0%
TATAAATGAGTCAGACCTTC+TGG + tig0024176:81352-81371 Msa1415190:intron 35.0%
! AGACCTTCTGGTTGTTAATT+AGG + tig0024176:81364-81383 Msa1415190:intron 35.0%
!!! TTCTGAGGCGAGAGTATTTT+AGG - tig0024176:75171-75190 None:intergenic 40.0%
TAAAATACTCTCGCCTCAGA+AGG + tig0024176:75170-75189 Msa1415190:intron 40.0%
CAAAACTCACATATTCAGGG+AGG + tig0024176:75361-75380 Msa1415190:CDS 40.0%
ACCATTTCGACTATTGGATC+TGG + tig0024176:75612-75631 Msa1415190:intron 40.0%
TCCAGATCCAATAGTCGAAA+TGG - tig0024176:75616-75635 None:intergenic 40.0%
TCACTCTACTTGGATCCTAT+AGG - tig0024176:75754-75773 None:intergenic 40.0%
GACCTTACCATAAAGAGTCT+TGG + tig0024176:76054-76073 Msa1415190:intron 40.0%
CACCAAGACTCTTTATGGTA+AGG - tig0024176:76059-76078 None:intergenic 40.0%
CAAAATTAGAATGACCCCTG+TGG + tig0024176:76154-76173 Msa1415190:intron 40.0%
GAATATTGTCTTGGGTGGTT+TGG + tig0024176:76191-76210 Msa1415190:intron 40.0%
!! GTTTTTGGAGGACACTAGTT+GGG - tig0024176:76457-76476 None:intergenic 40.0%
GCTTAGACTGCATTAGTAAC+AGG - tig0024176:76782-76801 None:intergenic 40.0%
TCACGATGAAGTAACTGGAA+AGG - tig0024176:77133-77152 None:intergenic 40.0%
TCCAGTTACTTCATCGTGAA+TGG + tig0024176:77134-77153 Msa1415190:intron 40.0%
TAGGTCGAATACATCTCTCA+AGG - tig0024176:77160-77179 None:intergenic 40.0%
ATACTTTGCTGCAAGTGAAC+AGG + tig0024176:77229-77248 Msa1415190:intron 40.0%
AGGAACAGATATGTTGACCA+AGG + tig0024176:77308-77327 Msa1415190:intron 40.0%
! CTCATCGGCTACAACATTTA+AGG - tig0024176:77390-77409 None:intergenic 40.0%
TGCGAAGTTCATTTAGTGAG+AGG + tig0024176:77415-77434 Msa1415190:CDS 40.0%
GAAGTTCATTTAGTGAGAGG+CGG + tig0024176:77418-77437 Msa1415190:CDS 40.0%
AAGTTCATTTAGTGAGAGGC+GGG + tig0024176:77419-77438 Msa1415190:CDS 40.0%
! TCAGTGTTATTGATTGCGGA+TGG + tig0024176:77682-77701 Msa1415190:intron 40.0%
GGTCAATTAGTGAAAGATGG+CGG - tig0024176:77767-77786 None:intergenic 40.0%
CTTTCACTAATTGACCACAG+CGG + tig0024176:77771-77790 Msa1415190:intron 40.0%
!! GATTGGTGCTGTCAAAATTG+CGG - tig0024176:77833-77852 None:intergenic 40.0%
ATCGAGGAGTGAAACATTAC+AGG - tig0024176:78063-78082 None:intergenic 40.0%
!! TTGGTTTCTGGTAAGAAGTC+TGG + tig0024176:78204-78223 Msa1415190:intron 40.0%
GTTTATGCAAAAGACCCAAC+AGG + tig0024176:78226-78245 Msa1415190:intron 40.0%
CAGGAAAGATGATTCCTGTT+GGG - tig0024176:78243-78262 None:intergenic 40.0%
! TTTTAGGCTAAAATGAGGGC+AGG - tig0024176:78262-78281 None:intergenic 40.0%
!!! CCCTTTATTTTTCCCATGCT+TGG + tig0024176:78411-78430 Msa1415190:intron 40.0%
CTGAACTTCAAAACCAAGCA+TGG - tig0024176:78427-78446 None:intergenic 40.0%
TCAAATTCTTCGCAACTAGG+AGG - tig0024176:78947-78966 None:intergenic 40.0%
GCTTCAAATTCTTCGCAACT+AGG - tig0024176:78950-78969 None:intergenic 40.0%
! GTGTGACCCATTTTATCTCA+AGG + tig0024176:79034-79053 Msa1415190:intron 40.0%
! GTGACCCATTTTATCTCAAG+GGG + tig0024176:79036-79055 Msa1415190:intron 40.0%
CACTACCCCTTGAGATAAAA+TGG - tig0024176:79044-79063 None:intergenic 40.0%
GGCAAAACCTTGGATTTCAT+GGG + tig0024176:79087-79106 Msa1415190:intron 40.0%
CAAGGTCAAATACTAGACTG+TGG - tig0024176:79412-79431 None:intergenic 40.0%
CACAGTCTAGTATTTGACCT+TGG + tig0024176:79410-79429 Msa1415190:intron 40.0%
GAATCTGAAAGGGAGATGAA+AGG - tig0024176:79441-79460 None:intergenic 40.0%
TTCAAGCTATCAGGGTTATC+CGG - tig0024176:79506-79525 None:intergenic 40.0%
CTCGAGTATTCAAGCTATCA+GGG - tig0024176:79514-79533 None:intergenic 40.0%
TATTTCAGTATCAGGCTGGT+AGG + tig0024176:79705-79724 Msa1415190:intron 40.0%
AGGGTAGTTTACTGTGCAAT+TGG + tig0024176:80073-80092 Msa1415190:intron 40.0%
TGGGTTATTGAAAAGTGACG+GGG - tig0024176:80162-80181 None:intergenic 40.0%
CTGTGGTCAACAACACATAT+AGG - tig0024176:80208-80227 None:intergenic 40.0%
! CGCTATTGACTACTACACTT+TGG - tig0024176:80332-80351 None:intergenic 40.0%
GGAGTTTGACGTAGAAACTA+AGG - tig0024176:80377-80396 None:intergenic 40.0%
CTACTATAGTGGCCAAATAG+TGG + tig0024176:80430-80449 Msa1415190:intron 40.0%
TACCTAACACCAAGTGAAGA+GGG - tig0024176:80536-80555 None:intergenic 40.0%
ATACCTAACACCAAGTGAAG+AGG - tig0024176:80537-80556 None:intergenic 40.0%
!! TTCACTTGGTGTTAGGTATG+AGG + tig0024176:80538-80557 Msa1415190:intron 40.0%
ATTTCCTGCATCTATTGACG+TGG + tig0024176:80727-80746 Msa1415190:intron 40.0%
CTTGACGAGATTAAAAGAGG+AGG + tig0024176:80799-80818 Msa1415190:intron 40.0%
GATTAACTGCAATACCGAGT+GGG - tig0024176:81044-81063 None:intergenic 40.0%
TGATTAACTGCAATACCGAG+TGG - tig0024176:81045-81064 None:intergenic 40.0%
AAAAATCATGCAAGCGGAGT+CGG + tig0024176:81084-81103 Msa1415190:intron 40.0%
TATGTTGACAACTGGAAGGT+TGG + tig0024176:81122-81141 Msa1415190:intron 40.0%
CATCCAAGAGTTTGAACCAA+TGG + tig0024176:81327-81346 Msa1415190:intron 40.0%
!! AGACCATTGGTTCAAACTCT+TGG - tig0024176:81333-81352 None:intergenic 40.0%
GGTTCACGAGTTTCTTTGTC+TGG - tig0024176:74851-74870 None:intergenic 45.0%
TGATCGAAGGATTCGATGTG+TGG - tig0024176:74947-74966 None:intergenic 45.0%
ATGCACAACGACGAGTTTGA+TGG - tig0024176:75005-75024 None:intergenic 45.0%
GCAGTTTCCCATAATGCTAC+AGG + tig0024176:75452-75471 Msa1415190:CDS 45.0%
ATTGAGGGAGATGCACCTAT+AGG + tig0024176:75736-75755 Msa1415190:intron 45.0%
GGGATTGCACTAAGCAAGAT+AGG + tig0024176:76109-76128 Msa1415190:intron 45.0%
ATTAGAATGACCCCTGTGGT+TGG + tig0024176:76158-76177 Msa1415190:intron 45.0%
TTAGAATGACCCCTGTGGTT+GGG + tig0024176:76159-76178 Msa1415190:intron 45.0%
GGTTTGGGTATGCATGATGA+AGG + tig0024176:76207-76226 Msa1415190:intron 45.0%
AGGCATAGAAGCTTCGTTGA+AGG + tig0024176:76227-76246 Msa1415190:intron 45.0%
GGCATAGAAGCTTCGTTGAA+GGG + tig0024176:76228-76247 Msa1415190:intron 45.0%
! GTTTGGTCTACGGTTTTCGT+TGG - tig0024176:76308-76327 None:intergenic 45.0%
! AGTTGCAACATTTTCCCACG+AGG - tig0024176:76427-76446 None:intergenic 45.0%
!! GGTTTTTGGAGGACACTAGT+TGG - tig0024176:76458-76477 None:intergenic 45.0%
GTCCTCCAAAAACCCTACAA+CGG + tig0024176:76464-76483 Msa1415190:intron 45.0%
TCCTCCAAAAACCCTACAAC+GGG + tig0024176:76465-76484 Msa1415190:intron 45.0%
! TCATCCCGTTGTAGGGTTTT+TGG - tig0024176:76472-76491 None:intergenic 45.0%
!! GAAGTAAAAGTGCTGGGAAG+TGG + tig0024176:76678-76697 Msa1415190:intron 45.0%
ACTTGAGAGACTTTCCTCCT+CGG + tig0024176:76808-76827 Msa1415190:CDS 45.0%
TTGTAGGACACAAGTTTCCG+AGG - tig0024176:76828-76847 None:intergenic 45.0%
TCGGAAACTTGTGTCCTACA+AGG + tig0024176:76827-76846 Msa1415190:CDS 45.0%
ACTTGTGTCCTACAAGGAAG+AGG + tig0024176:76833-76852 Msa1415190:CDS 45.0%
!! AAGGAAGAGGCATCGGAAAT+GGG + tig0024176:76846-76865 Msa1415190:CDS 45.0%
GCCATTCACGATGAAGTAAC+TGG - tig0024176:77138-77157 None:intergenic 45.0%
GAACTTCGCACTGTACTCAT+CGG - tig0024176:77405-77424 None:intergenic 45.0%
! GTGTTATTGATTGCGGATGG+TGG + tig0024176:77685-77704 Msa1415190:intron 45.0%
!! TATTGATTGCGGATGGTGGA+AGG + tig0024176:77689-77708 Msa1415190:intron 45.0%
!! ATTGATTGCGGATGGTGGAA+GGG + tig0024176:77690-77709 Msa1415190:intron 45.0%
GCGTTCTATGACAGGAATTG+TGG - tig0024176:77737-77756 None:intergenic 45.0%
ATTCCTGTCATAGAACGCTG+TGG + tig0024176:77739-77758 Msa1415190:intron 45.0%
GCAGGAAAGATGATTCCTGT+TGG - tig0024176:78244-78263 None:intergenic 45.0%
! AAGAGAGTACATGCTTCCTG+TGG + tig0024176:78346-78365 Msa1415190:CDS 45.0%
! AGAGAGTACATGCTTCCTGT+GGG + tig0024176:78347-78366 Msa1415190:CDS 45.0%
! TCCTGTGGGCATTCTTTTGA+AGG + tig0024176:78361-78380 Msa1415190:CDS 45.0%
ACCTTCAAAAGAATGCCCAC+AGG - tig0024176:78365-78384 None:intergenic 45.0%
!! AAAAGGGAAAGGGCGTTGTT+GGG + tig0024176:78549-78568 Msa1415190:CDS 45.0%
CGGCAAAACCTTGGATTTCA+TGG + tig0024176:79086-79105 Msa1415190:intron 45.0%
CCTCAATCCCATGAAATCCA+AGG - tig0024176:79097-79116 None:intergenic 45.0%
CCTTGGATTTCATGGGATTG+AGG + tig0024176:79094-79113 Msa1415190:intron 45.0%
TGAAAGGGAGATGAAAGGAG+GGG - tig0024176:79436-79455 None:intergenic 45.0%
CTGAAAGGGAGATGAAAGGA+GGG - tig0024176:79437-79456 None:intergenic 45.0%
TCTGAAAGGGAGATGAAAGG+AGG - tig0024176:79438-79457 None:intergenic 45.0%
TGTAGATCAGACATCAGTGC+CGG + tig0024176:79484-79503 Msa1415190:CDS 45.0%
CCTCGAGTATTCAAGCTATC+AGG - tig0024176:79515-79534 None:intergenic 45.0%
CCTGATAGCTTGAATACTCG+AGG + tig0024176:79512-79531 Msa1415190:CDS 45.0%
! TAGGCATATGCTTACTGGCT+TGG + tig0024176:79724-79743 Msa1415190:intron 45.0%
AGTGTAGTAGTCAATAGCGG+CGG + tig0024176:80333-80352 Msa1415190:intron 45.0%
GCAGCATGACCCATAGTATT+GGG - tig0024176:80500-80519 None:intergenic 45.0%
ACCTAACACCAAGTGAAGAG+GGG - tig0024176:80535-80554 None:intergenic 45.0%
CATCTATTGACGTGGATCCT+AGG + tig0024176:80735-80754 Msa1415190:intron 45.0%
!!! CCACTCTTCTAGTTTTGCCT+AGG - tig0024176:80755-80774 None:intergenic 45.0%
CCTAGGCAAAACTAGAAGAG+TGG + tig0024176:80752-80771 Msa1415190:intron 45.0%
GGAGGGAAGATTGGCAAAAA+TGG + tig0024176:80817-80836 Msa1415190:intron 45.0%
GTTGGCTACAAGTATACCTC+TGG + tig0024176:81140-81159 Msa1415190:intron 45.0%
ACTCTTGGATGCCATCATGA+AGG - tig0024176:81318-81337 None:intergenic 45.0%
!! AAAATAATAAAAATGATAAT+TGG + tig0024176:77527-77546 Msa1415190:intron 5.0%
!! AAATAATAAAAATGATAATT+GGG + tig0024176:77528-77547 Msa1415190:intron 5.0%
ATACTCTCGCCTCAGAAGGA+TGG + tig0024176:75174-75193 Msa1415190:intron 50.0%
TTGGCGATTCCATCCTTCTG+AGG - tig0024176:75186-75205 None:intergenic 50.0%
! CAGAGTTTTGCGCGTTGTCT+TGG - tig0024176:75205-75224 None:intergenic 50.0%
! CAACATTTTCCCACGAGGTG+GGG - tig0024176:76422-76441 None:intergenic 50.0%
! GCAACATTTTCCCACGAGGT+GGG - tig0024176:76423-76442 None:intergenic 50.0%
! TGCAACATTTTCCCACGAGG+TGG - tig0024176:76424-76443 None:intergenic 50.0%
!! TCCCGTTGTAGGGTTTTTGG+AGG - tig0024176:76469-76488 None:intergenic 50.0%
CTAGCAGTCATCCCGTTGTA+GGG - tig0024176:76479-76498 None:intergenic 50.0%
TCTAGCAGTCATCCCGTTGT+AGG - tig0024176:76480-76499 None:intergenic 50.0%
TAGGACACAAGTTTCCGAGG+AGG - tig0024176:76825-76844 None:intergenic 50.0%
! GTCCTACAAGGAAGAGGCAT+CGG + tig0024176:76839-76858 Msa1415190:CDS 50.0%
TTCCGATGCCTCTTCCTTGT+AGG - tig0024176:76844-76863 None:intergenic 50.0%
!! CAAGGAAGAGGCATCGGAAA+TGG + tig0024176:76845-76864 Msa1415190:CDS 50.0%
GAAATGGGCGGGTACGTTAT+TGG + tig0024176:76861-76880 Msa1415190:intron 50.0%
TCATTTAGTGAGAGGCGGGA+AGG + tig0024176:77423-77442 Msa1415190:CDS 50.0%
CACTAATTGACCACAGCGGT+TGG + tig0024176:77775-77794 Msa1415190:intron 50.0%
! ACCTTCGTAATGGGAGTGCA+AGG + tig0024176:78180-78199 Msa1415190:CDS 50.0%
! TCGGTCAGTGGTGTCAATGA+GGG - tig0024176:78486-78505 None:intergenic 50.0%
!! GAAAAGGGAAAGGGCGTTGT+TGG + tig0024176:78548-78567 Msa1415190:CDS 50.0%
!! GACCCAGCTTGTTGGTGAAA+GGG + tig0024176:78571-78590 Msa1415190:CDS 50.0%
TGCCCTTTCACCAACAAGCT+GGG - tig0024176:78576-78595 None:intergenic 50.0%
TTGCCCTTTCACCAACAAGC+TGG - tig0024176:78577-78596 None:intergenic 50.0%
GCTGGTAGGCATATGCTTAC+TGG + tig0024176:79719-79738 Msa1415190:intron 50.0%
GCCTTGAGTTTCTCTGCTGA+AGG + tig0024176:79753-79772 Msa1415190:intron 50.0%
GCCTTCAGCAGAGAAACTCA+AGG - tig0024176:79757-79776 None:intergenic 50.0%
TAAGGGATGCTGCACTAGAG+CGG - tig0024176:80359-80378 None:intergenic 50.0%
! CACCTGCTGTGCTACTATAG+TGG + tig0024176:80419-80438 Msa1415190:intron 50.0%
GGCAGCATGACCCATAGTAT+TGG - tig0024176:80501-80520 None:intergenic 50.0%
TGAAGAGGGGACACATCAGA+TGG - tig0024176:80522-80541 None:intergenic 50.0%
TGATGTGTCCCCTCTTCACT+TGG + tig0024176:80524-80543 Msa1415190:intron 50.0%
!! TCCCCTCTTCACTTGGTGTT+AGG + tig0024176:80531-80550 Msa1415190:intron 50.0%
GGATCCACGTCAATAGATGC+AGG - tig0024176:80734-80753 None:intergenic 50.0%
GGCAAAACTAGAAGAGTGGC+TGG + tig0024176:80756-80775 Msa1415190:intron 50.0%
TATACCTCTGGATCTGCCTC+AGG + tig0024176:81152-81171 Msa1415190:intron 50.0%
! ATTTTCCCACGAGGTGGGGT+CGG - tig0024176:76418-76437 None:intergenic 55.0%
!! GAAGAGGCATCGGAAATGGG+CGG + tig0024176:76849-76868 Msa1415190:CDS 55.0%
!! AAGAGGCATCGGAAATGGGC+GGG + tig0024176:76850-76869 Msa1415190:CDS 55.0%
! GGGATTTTTGCCAACCGCTG+TGG - tig0024176:77788-77807 None:intergenic 55.0%
GCCTTGCACTCCCATTACGA+AGG - tig0024176:78184-78203 None:intergenic 55.0%
! CGTAATGGGAGTGCAAGGCT+TGG + tig0024176:78185-78204 Msa1415190:CDS 55.0%
! GGAGTGCAAGGCTTGGTTTC+TGG + tig0024176:78192-78211 Msa1415190:CDS 55.0%
! CTCGGTCAGTGGTGTCAATG+AGG - tig0024176:78487-78506 None:intergenic 55.0%
GTTGTTGGGACCCAGCTTGT+TGG + tig0024176:78563-78582 Msa1415190:CDS 55.0%
!! GGACCCAGCTTGTTGGTGAA+AGG + tig0024176:78570-78589 Msa1415190:CDS 55.0%
GGCCACTATAGTAGCACAGC+AGG - tig0024176:80424-80443 None:intergenic 55.0%
GGGCTGCTACAGCCACTATT+TGG - tig0024176:80445-80464 None:intergenic 55.0%
ACTAGAAGAGTGGCTGGCGA+AGG + tig0024176:80762-80781 Msa1415190:intron 55.0%
CTAGAAGAGTGGCTGGCGAA+GGG + tig0024176:80763-80782 Msa1415190:intron 55.0%
TAGAAGAGTGGCTGGCGAAG+GGG + tig0024176:80764-80783 Msa1415190:intron 55.0%
CATACCTGAGGCAGATCCAG+AGG - tig0024176:81159-81178 None:intergenic 55.0%
CTCTGGATCTGCCTCAGGTA+TGG + tig0024176:81157-81176 Msa1415190:intron 55.0%
! ACGAGGTGGGGTCGGTTTCA+GGG - tig0024176:76410-76429 None:intergenic 60.0%
TGAAACCGACCCCACCTCGT+GGG + tig0024176:76410-76429 Msa1415190:intron 60.0%
GCGCCACAGCGTTCTATGAC+AGG - tig0024176:77745-77764 None:intergenic 60.0%
GGAGATGAAAGGAGGGGCCA+AGG - tig0024176:79430-79449 None:intergenic 60.0%
CGCTGGCAAGTCCATACCTG+AGG - tig0024176:81171-81190 None:intergenic 60.0%
! CACGAGGTGGGGTCGGTTTC+AGG - tig0024176:76411-76430 None:intergenic 65.0%
CTGAAACCGACCCCACCTCG+TGG + tig0024176:76409-76428 Msa1415190:intron 65.0%
Chromosome Type Strat End Strand Name
tig0024176 gene 74845 81518 74845 ID=Msa1415190;Name=Msa1415190
tig0024176 mRNA 74845 81518 74845 ID=Msa1415190-mRNA-1;Parent=Msa1415190;Name=Msa1415190-mRNA-1;_AED=0.13;_eAED=0.28;_QI=0|0.81|0.75|0.91|0.90|1|12|0|342
tig0024176 exon 74845 75018 74845 ID=Msa1415190-mRNA-1:exon:22197;Parent=Msa1415190-mRNA-1
tig0024176 exon 75351 75473 75351 ID=Msa1415190-mRNA-1:exon:22198;Parent=Msa1415190-mRNA-1
tig0024176 exon 76795 76871 76795 ID=Msa1415190-mRNA-1:exon:22199;Parent=Msa1415190-mRNA-1
tig0024176 exon 77139 77202 77139 ID=Msa1415190-mRNA-1:exon:22200;Parent=Msa1415190-mRNA-1
tig0024176 exon 77402 77472 77402 ID=Msa1415190-mRNA-1:exon:22201;Parent=Msa1415190-mRNA-1
tig0024176 exon 78136 78213 78136 ID=Msa1415190-mRNA-1:exon:22202;Parent=Msa1415190-mRNA-1
tig0024176 exon 78337 78382 78337 ID=Msa1415190-mRNA-1:exon:22203;Parent=Msa1415190-mRNA-1
tig0024176 exon 78482 78662 78482 ID=Msa1415190-mRNA-1:exon:22204;Parent=Msa1415190-mRNA-1
tig0024176 exon 78738 78790 78738 ID=Msa1415190-mRNA-1:exon:22205;Parent=Msa1415190-mRNA-1
tig0024176 exon 79216 79289 79216 ID=Msa1415190-mRNA-1:exon:22206;Parent=Msa1415190-mRNA-1
tig0024176 exon 79457 79533 79457 ID=Msa1415190-mRNA-1:exon:22207;Parent=Msa1415190-mRNA-1
tig0024176 exon 81511 81518 81511 ID=Msa1415190-mRNA-1:exon:22208;Parent=Msa1415190-mRNA-1
tig0024176 CDS 74845 75018 74845 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 75351 75473 75351 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 76795 76871 76795 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 77139 77202 77139 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 77402 77472 77402 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 78136 78213 78136 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 78337 78382 78337 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 78482 78662 78482 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 78738 78790 78738 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 79216 79289 79216 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 79457 79533 79457 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
tig0024176 CDS 81511 81518 81511 ID=Msa1415190-mRNA-1:cds;Parent=Msa1415190-mRNA-1
Gene Sequence

>Msa1415190

ATGCCAGACAAAGAAACTCGTGAACCTATCAATAATCTGACTAAACAATCGAATTCGCTCGACAACTTGAACTTCGATGCTCTCAAAGTGCTTTTCAAACCACACATCGAATCCTTCGATCATTTGATTGAAGCTGGATTGGAAACCATTTTCAAATCCATCAAACTCGTCGTTTGTAGACAAGCAAAACTCACATATTCAGGGAGGTTCACAGCAGATGTGTGTTTTAAATATGATGACGGTGGGGCTATTTTAAGAGAAACTTTTAATTTTGGGCAGTTTCCCATAATGCTACAGTCTAAGCGATGCAACTTGAGAGACTTTCCTCCTCGGAAACTTGTGTCCTACAAGGAAGAGGCATCGGAAATGGGCGGTTACTTCATCGTGAATGGCCTTGAGAGATGTATTCGACCTATAATTCTATCAAAACGGAATTATCCGATGAGTACAGTGCGAAGTTCATTTAGTGAGAGGCGGGAAGGATATACTGATAAAGCAGTTGTTTTAAGGTGTGTAAGAGCTGATCAAACCTCGTTAACAGTGAAACTTTATTACCTTCGTAATGGGAGTGCAAGGCTTGGTTTCTGGATACACGGAAGAGAGTACATGCTTCCTGTGGGCATTCTTTTGAAGGCCCTCATTGACACCACTGACCGAGAAATTTATGTAAATTTGACAAGCTGTTATAATGAAAAGTATGAAAAGGGAAAGGGCGTTGTTGGGACCCAGCTTGTTGGTGAAAGGGCAAAAATAATTTTAGATGAAGTTCGTGCTTTGTCTCTTTTCACTCGTCTTCAATGTCTAGAATATATTGGAGAGCATTTCCAACCAATTATGCATGATCTCAGAAATGAAAGTCATTATATTGTCGCTGATGATGTTCTGAAGAACTACATATTTGTTCATCTGGAGAACAATTTTGACAAGTTCAATCTGCTCATATTCATGTTGCAGAAACTTTTTTCACTTGTAGATCAGACATCAGTGCCGGATAACCCTGATAGCTTGAATACTCGAGAAGATAGG
Protein sequence

>Msa1415190

MPDKETREPINNLTKQSNSLDNLNFDALKVLFKPHIESFDHLIEAGLETIFKSIKLVVCRQAKLTYSGRFTADVCFKYDDGGAILRETFNFGQFPIMLQSKRCNLRDFPPRKLVSYKEEASEMGGYFIVNGLERCIRPIILSKRNYPMSTVRSSFSERREGYTDKAVVLRCVRADQTSLTVKLYYLRNGSARLGFWIHGREYMLPVGILLKALIDTTDREIYVNLTSCYNEKYEKGKGVVGTQLVGERAKIILDEVRALSLFTRLQCLEYIGEHFQPIMHDLRNESHYIVADDVLKNYIFVHLENNFDKFNLLIFMLQKLFSLVDQTSVPDNPDSLNTREDR