Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1416280 | sp|Q9SS37|RTNLH_ARATH | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 2.02e-96 | 285 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1416280 | A0A396HYP0 | 97.107 | 242 | 6 | 1 | 1 | 242 | 1 | 241 | 1.17e-171 | 481 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1416280 | Msa1422290 | 0.858194 | 9.738747e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1416280 | MtrunA17_Chr5g0442361 | 97.107 | 242 | 6 | 1 | 1 | 242 | 1 | 241 | 2.26e-175 | 481 |
Msa1416280 | MtrunA17_Chr3g0095441 | 65.217 | 230 | 78 | 1 | 1 | 230 | 1 | 228 | 1.24e-111 | 320 |
Msa1416280 | MtrunA17_Chr8g0387631 | 47.418 | 213 | 107 | 2 | 30 | 239 | 42 | 252 | 8.22e-69 | 212 |
Msa1416280 | MtrunA17_Chr8g0348131 | 44.286 | 210 | 111 | 2 | 34 | 239 | 53 | 260 | 2.69e-62 | 196 |
Msa1416280 | MtrunA17_Chr1g0202401 | 40.306 | 196 | 115 | 2 | 42 | 237 | 50 | 243 | 2.89e-54 | 175 |
Msa1416280 | MtrunA17_Chr8g0376101 | 40.500 | 200 | 111 | 2 | 43 | 239 | 21 | 215 | 1.54e-52 | 169 |
Msa1416280 | MtrunA17_Chr1g0209261 | 36.181 | 199 | 115 | 4 | 43 | 239 | 10 | 198 | 2.44e-40 | 137 |
Msa1416280 | MtrunA17_Chr3g0108661 | 32.979 | 188 | 124 | 1 | 41 | 228 | 45 | 230 | 7.21e-34 | 122 |
Msa1416280 | MtrunA17_Chr4g0005701 | 33.163 | 196 | 129 | 1 | 41 | 236 | 5 | 198 | 1.30e-29 | 110 |
Msa1416280 | MtrunA17_Chr6g0453331 | 31.111 | 180 | 122 | 1 | 60 | 239 | 14 | 191 | 5.13e-27 | 103 |
Msa1416280 | MtrunA17_Chr5g0402811 | 30.939 | 181 | 123 | 1 | 55 | 235 | 29 | 207 | 9.85e-24 | 95.1 |
Msa1416280 | MtrunA17_Chr1g0208091 | 33.511 | 188 | 123 | 1 | 50 | 237 | 9 | 194 | 1.38e-23 | 94.4 |
Msa1416280 | MtrunA17_Chr5g0402701 | 33.333 | 144 | 94 | 1 | 62 | 205 | 344 | 485 | 2.91e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1416280 | AT3G10260.1 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 2.06e-97 | 285 |
Msa1416280 | AT3G10260.2 | 56.710 | 231 | 96 | 3 | 10 | 240 | 14 | 240 | 2.06e-97 | 285 |
Msa1416280 | AT3G10260.3 | 56.710 | 231 | 96 | 3 | 10 | 240 | 34 | 260 | 4.43e-97 | 285 |
Msa1416280 | AT2G46170.1 | 45.098 | 204 | 110 | 1 | 34 | 237 | 43 | 244 | 6.39e-66 | 205 |
Msa1416280 | AT3G61560.1 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.10e-64 | 201 |
Msa1416280 | AT3G61560.2 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.10e-64 | 201 |
Msa1416280 | AT1G64090.1 | 40.758 | 211 | 119 | 2 | 33 | 239 | 38 | 246 | 1.52e-58 | 186 |
Msa1416280 | AT4G23630.1 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.89e-58 | 185 |
Msa1416280 | AT4G23630.2 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.89e-58 | 185 |
Msa1416280 | AT4G11220.1 | 37.374 | 198 | 122 | 1 | 42 | 239 | 68 | 263 | 2.90e-57 | 183 |
Msa1416280 | AT5G41600.1 | 41.089 | 202 | 113 | 3 | 42 | 239 | 51 | 250 | 9.10e-56 | 179 |
Msa1416280 | AT1G64090.2 | 38.222 | 225 | 117 | 3 | 35 | 239 | 40 | 262 | 1.36e-54 | 177 |
Msa1416280 | AT3G18260.1 | 38.191 | 199 | 121 | 1 | 41 | 239 | 21 | 217 | 7.01e-50 | 163 |
Msa1416280 | AT4G01230.2 | 38.916 | 203 | 119 | 1 | 35 | 237 | 46 | 243 | 7.96e-50 | 164 |
Msa1416280 | AT3G61560.3 | 45.570 | 158 | 84 | 1 | 34 | 191 | 43 | 198 | 1.26e-47 | 157 |
Msa1416280 | AT4G01230.1 | 37.931 | 203 | 119 | 2 | 35 | 237 | 46 | 241 | 1.69e-46 | 155 |
Msa1416280 | AT2G46170.2 | 41.912 | 136 | 77 | 1 | 34 | 169 | 43 | 176 | 1.17e-35 | 125 |
Msa1416280 | AT3G10915.2 | 30.348 | 201 | 138 | 1 | 37 | 237 | 19 | 217 | 1.09e-34 | 124 |
Msa1416280 | AT3G10915.7 | 29.808 | 208 | 144 | 1 | 29 | 236 | 36 | 241 | 1.65e-34 | 124 |
Msa1416280 | AT3G10915.4 | 30.198 | 202 | 138 | 2 | 37 | 237 | 19 | 218 | 6.27e-33 | 119 |
Msa1416280 | AT2G15280.1 | 33.158 | 190 | 125 | 1 | 47 | 236 | 2 | 189 | 1.23e-32 | 118 |
Msa1416280 | AT1G68230.2 | 33.161 | 193 | 121 | 3 | 50 | 240 | 22 | 208 | 4.95e-28 | 106 |
Msa1416280 | AT3G10915.5 | 27.232 | 224 | 138 | 3 | 37 | 237 | 19 | 240 | 1.59e-27 | 106 |
Msa1416280 | AT3G10915.6 | 28.415 | 183 | 129 | 1 | 54 | 236 | 4 | 184 | 1.06e-26 | 102 |
Msa1416280 | AT3G19460.1 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.09e-26 | 102 |
Msa1416280 | AT3G19460.5 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.09e-26 | 102 |
Msa1416280 | AT3G19460.4 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.09e-26 | 102 |
Msa1416280 | AT3G10915.3 | 28.652 | 178 | 125 | 1 | 59 | 236 | 8 | 183 | 1.77e-26 | 102 |
Msa1416280 | AT3G54120.1 | 28.708 | 209 | 142 | 3 | 36 | 243 | 1 | 203 | 7.00e-22 | 90.1 |
Msa1416280 | AT3G19460.3 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.62e-20 | 86.3 |
Msa1416280 | AT3G19460.7 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.62e-20 | 86.3 |
Msa1416280 | AT1G68230.1 | 33.793 | 145 | 88 | 3 | 50 | 192 | 22 | 160 | 4.77e-17 | 76.3 |
Msa1416280 | AT3G10915.1 | 31.200 | 125 | 84 | 1 | 42 | 166 | 24 | 146 | 7.68e-17 | 75.9 |
Msa1416280 | AT2G23640.1 | 24.713 | 174 | 129 | 1 | 61 | 234 | 18 | 189 | 7.15e-15 | 71.2 |
Msa1416280 | AT2G15280.2 | 23.684 | 190 | 104 | 2 | 47 | 236 | 2 | 150 | 1.23e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCACTTGTGATGAAAT+TGG | 0.144159 | tig0024335:+52485 | Msa1416280:three_prime_UTR |
TAGATTCATGTTTATGTAAA+TGG | 0.146269 | tig0024335:+52444 | Msa1416280:exon |
TGCAGGTTGTAGTATGCTTA+TGG | 0.271495 | tig0024335:+51784 | Msa1416280:intron |
TCATGTCTGTACAGTTTCTT+TGG | 0.274156 | tig0024335:+51090 | Msa1416280:CDS |
CTGAGGTTAACCGTGGTTTA+AGG | 0.278401 | tig0024335:+51326 | Msa1416280:CDS |
ACTTCCCTCTGCTCGCATTC+TGG | 0.281803 | tig0024335:+49017 | Msa1416280:five_prime_UTR |
TATCCAAGCTTCTTTCCTTT+GGG | 0.285834 | tig0024335:-52423 | None:intergenic |
TATAATTAAGCCATTCAAAA+AGG | 0.291332 | tig0024335:-51031 | None:intergenic |
CAGTATAGGAAGGTGGATTC+TGG | 0.314712 | tig0024335:+52384 | Msa1416280:CDS |
CTATCCAAGCTTCTTTCCTT+TGG | 0.317711 | tig0024335:-52424 | None:intergenic |
TATTAACAAAGAAATCTTTC+GGG | 0.323201 | tig0024335:-51285 | None:intergenic |
CAGAATCCACCTTCCTATAC+TGG | 0.327594 | tig0024335:-52383 | None:intergenic |
GTCCAAACAGTTTATTGAAC+TGG | 0.330990 | tig0024335:-50799 | None:intergenic |
TAACCGCTGCAACAACTATA+TGG | 0.340621 | tig0024335:+51006 | Msa1416280:CDS |
TTCTCACTTGTGATGAAATT+GGG | 0.354995 | tig0024335:+52486 | Msa1416280:three_prime_UTR |
ATATTAACAAAGAAATCTTT+CGG | 0.374090 | tig0024335:-51286 | None:intergenic |
CTGGTGCTGTGATTGGGAAC+TGG | 0.386885 | tig0024335:+51808 | Msa1416280:CDS |
ATGCTTCCGGCGTGTTTAGC+AGG | 0.400253 | tig0024335:+51117 | Msa1416280:CDS |
TCCCAGTTCAATAAACTGTT+TGG | 0.402640 | tig0024335:+50797 | Msa1416280:CDS |
TTATGGGCTGGTGCTGTGAT+TGG | 0.407728 | tig0024335:+51801 | Msa1416280:CDS |
TTTCTTTGGACAAATGCTTC+CGG | 0.425537 | tig0024335:+51104 | Msa1416280:CDS |
GCCATCAAAAGCTCCTCGTT+TGG | 0.430625 | tig0024335:+51258 | Msa1416280:CDS |
TCATACCTTTCGTAGAGAAC+CGG | 0.437296 | tig0024335:-52312 | None:intergenic |
GCAGGTTGTAGTATGCTTAT+GGG | 0.447620 | tig0024335:+51785 | Msa1416280:intron |
TATGGGCTGGTGCTGTGATT+GGG | 0.451379 | tig0024335:+51802 | Msa1416280:CDS |
ATCCAAGCTTCTTTCCTTTG+GGG | 0.455010 | tig0024335:-52422 | None:intergenic |
GAGCTAGGCATAGAAGTGAT+AGG | 0.455942 | tig0024335:-51058 | None:intergenic |
CTTCAAAATGTTTCATGTGG+AGG | 0.472512 | tig0024335:+51352 | Msa1416280:CDS |
AAAGCTTCTGAACACCTTCG+TGG | 0.484982 | tig0024335:+50709 | Msa1416280:CDS |
AGTTGTTGCAGCGGTTAAAA+CGG | 0.489432 | tig0024335:-51000 | None:intergenic |
AGCAATGAAGTGAAAAGTTA+CGG | 0.492166 | tig0024335:-48983 | None:intergenic |
ATCCCCAAAGGAAAGAAGCT+TGG | 0.496516 | tig0024335:+52420 | Msa1416280:CDS |
ATCAGATGCAAAACCAGTAT+AGG | 0.499744 | tig0024335:+52370 | Msa1416280:CDS |
CTTGGCGAGAGGCAAAAGTC+TGG | 0.502330 | tig0024335:+50737 | Msa1416280:CDS |
TTTGAAGAAACCTTAAACCA+CGG | 0.502721 | tig0024335:-51336 | None:intergenic |
AGTTTGCCTTCACTTCTACA+TGG | 0.505250 | tig0024335:-50766 | None:intergenic |
TCAAACCAGAATGCGAGCAG+AGG | 0.526828 | tig0024335:-49022 | None:intergenic |
TGTTGCTGCACATACACTCC+CGG | 0.528499 | tig0024335:+52293 | Msa1416280:CDS |
TCCAAACAGTTTATTGAACT+GGG | 0.530900 | tig0024335:-50798 | None:intergenic |
GTTAATATTGCAACTGCGGT+TGG | 0.530904 | tig0024335:+51301 | Msa1416280:CDS |
GATTGATAACTTCGTGTACA+AGG | 0.536766 | tig0024335:+52341 | Msa1416280:CDS |
AACACCTTCGTGGAAACACT+TGG | 0.537056 | tig0024335:+50719 | Msa1416280:CDS |
TTTCTTCAAAATGTTTCATG+TGG | 0.542392 | tig0024335:+51349 | Msa1416280:CDS |
CCACCTAAAATATGGTGCAC+AGG | 0.562386 | tig0024335:-50830 | None:intergenic |
GTTGTAGTATGCTTATGGGC+TGG | 0.564353 | tig0024335:+51789 | Msa1416280:CDS |
CATACCTTTCGTAGAGAACC+GGG | 0.565792 | tig0024335:-52311 | None:intergenic |
TAGCTGCTGATGTCATGTTG+TGG | 0.573484 | tig0024335:+50955 | Msa1416280:intron |
TGCAACTGCGGTTGGTACTG+AGG | 0.575677 | tig0024335:+51309 | Msa1416280:CDS |
CTTTGTTAATATTGCAACTG+CGG | 0.576367 | tig0024335:+51297 | Msa1416280:CDS |
TTCATTCCATGTAGAAGTGA+AGG | 0.576828 | tig0024335:+50760 | Msa1416280:CDS |
CACTCCCGGTTCTCTACGAA+AGG | 0.578629 | tig0024335:+52307 | Msa1416280:CDS |
CTGCTGATGTCATGTTGTGG+AGG | 0.578920 | tig0024335:+50958 | Msa1416280:CDS |
CAAACCAGAATGCGAGCAGA+GGG | 0.599111 | tig0024335:-49021 | None:intergenic |
TTTCTTTCCGTAGTGACAGG+AGG | 0.604290 | tig0024335:+51236 | Msa1416280:intron |
TGCTGATGTCATGTTGTGGA+GGG | 0.606274 | tig0024335:+50959 | Msa1416280:CDS |
ACATGACAAGAACAAGAGCT+AGG | 0.612406 | tig0024335:-51073 | None:intergenic |
CTCGCCAAGTGTTTCCACGA+AGG | 0.615062 | tig0024335:-50723 | None:intergenic |
GATGCAAAACCAGTATAGGA+AGG | 0.625408 | tig0024335:+52374 | Msa1416280:CDS |
GCAAAACCAGTATAGGAAGG+TGG | 0.628367 | tig0024335:+52377 | Msa1416280:CDS |
GAGCCATATAGTTGTTGCAG+CGG | 0.636566 | tig0024335:-51009 | None:intergenic |
TCGTGGAAACACTTGGCGAG+AGG | 0.645330 | tig0024335:+50726 | Msa1416280:CDS |
TTGCTTAGCAAAATCCCCAA+AGG | 0.645417 | tig0024335:+52408 | Msa1416280:CDS |
GTTGGTACTGAGGTTAACCG+TGG | 0.658377 | tig0024335:+51319 | Msa1416280:CDS |
GAATAACCTGCTAAACACGC+CGG | 0.683282 | tig0024335:-51123 | None:intergenic |
AGATAATTCAGAAAAGTGTG+TGG | 0.684590 | tig0024335:-48949 | None:intergenic |
AAACAGTTTATTGAACTGGG+AGG | 0.721336 | tig0024335:-50795 | None:intergenic |
TCTTTCGGGAGAACCAAACG+AGG | 0.723179 | tig0024335:-51271 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTTTTATAAAAAAAT+TGG | - | tig0024335:49393-49412 | None:intergenic | 0.0% |
!! | CATTTAGATAAAAATAAAAT+AGG | - | tig0024335:51181-51200 | None:intergenic | 10.0% |
!!! | TTTATTTTTATCTAAATGTA+TGG | + | tig0024335:51183-51202 | Msa1416280:intron | 10.0% |
!!! | TATTTAGAGATAATATTTTT+AGG | - | tig0024335:51969-51988 | None:intergenic | 10.0% |
!! | ATATAAATGATATAATGACA+TGG | - | tig0024335:49276-49295 | None:intergenic | 15.0% |
!! | ATATTAACAAAGAAATCTTT+CGG | - | tig0024335:51289-51308 | None:intergenic | 15.0% |
!! | ACACATGAATTAAAAAAAAT+TGG | - | tig0024335:51666-51685 | None:intergenic | 15.0% |
!!! | TTTTTTAATTCATGTGTTTT+AGG | + | tig0024335:51669-51688 | Msa1416280:intron | 15.0% |
!!! | TATGATTTTATATTTAGAGA+CGG | + | tig0024335:51695-51714 | Msa1416280:intron | 15.0% |
!!! | AATAATTTCTTTTTCTATGT+TGG | + | tig0024335:52546-52565 | Msa1416280:three_prime_UTR | 15.0% |
!! | GAAAGAGATGAAAAAAAAAT+GGG | - | tig0024335:49056-49075 | None:intergenic | 20.0% |
!! | TGAAAGAGATGAAAAAAAAA+TGG | - | tig0024335:49057-49076 | None:intergenic | 20.0% |
!! | TTGAAAAGGATAAAAGAAAA+TGG | - | tig0024335:49082-49101 | None:intergenic | 20.0% |
!! | AAAACATGAATAGATTGAAA+AGG | - | tig0024335:49096-49115 | None:intergenic | 20.0% |
!! | AAAGTCTAGAAATAAATGTA+AGG | + | tig0024335:49533-49552 | Msa1416280:intron | 20.0% |
!!! | CATTTTCGCTAAAAATAAAA+TGG | - | tig0024335:49610-49629 | None:intergenic | 20.0% |
!! | AATCATGGAAAAAATCATAA+TGG | - | tig0024335:50574-50593 | None:intergenic | 20.0% |
!! | TATAATTAAGCCATTCAAAA+AGG | - | tig0024335:51034-51053 | None:intergenic | 20.0% |
!! | TATTAACAAAGAAATCTTTC+GGG | - | tig0024335:51288-51307 | None:intergenic | 20.0% |
!! | GATTATAAATGACAAAACAA+AGG | - | tig0024335:51425-51444 | None:intergenic | 20.0% |
!!! | GTATGTTTTAAGCATAAATA+TGG | - | tig0024335:51447-51466 | None:intergenic | 20.0% |
!!! | TTTCATTGTCCTTTTTTAAA+AGG | + | tig0024335:51503-51522 | Msa1416280:intron | 20.0% |
!! | ATGTAGTTGAAAATTTGAAA+GGG | - | tig0024335:51530-51549 | None:intergenic | 20.0% |
!! | AATGTAGTTGAAAATTTGAA+AGG | - | tig0024335:51531-51550 | None:intergenic | 20.0% |
!! | CAACATAATTAGAGATATAA+TGG | - | tig0024335:51567-51586 | None:intergenic | 20.0% |
!! | AATAATTAGAGAAAACATCA+TGG | - | tig0024335:51903-51922 | None:intergenic | 20.0% |
!!! | GTTTTCTCTAATTATTAAGT+TGG | + | tig0024335:51907-51926 | Msa1416280:intron | 20.0% |
!!! | GTTAAAACTTTGTTATGTTA+CGG | + | tig0024335:52211-52230 | Msa1416280:intron | 20.0% |
!! | TAGATTCATGTTTATGTAAA+TGG | + | tig0024335:52444-52463 | Msa1416280:exon | 20.0% |
!! | GAGATAAAAAGAGAATTTTG+TGG | + | tig0024335:49338-49357 | Msa1416280:intron | 25.0% |
! | TAGAAATAAATGTAAGGACA+TGG | + | tig0024335:49539-49558 | Msa1416280:intron | 25.0% |
! | AGAAATAAATGTAAGGACAT+GGG | + | tig0024335:49540-49559 | Msa1416280:intron | 25.0% |
! | TGACATAATTCAATGTAATC+AGG | - | tig0024335:49732-49751 | None:intergenic | 25.0% |
!!! | TTGTTTTTAAAAACCTTGAG+TGG | + | tig0024335:49994-50013 | Msa1416280:intron | 25.0% |
!!! | TGTTTTTAAAAACCTTGAGT+GGG | + | tig0024335:49995-50014 | Msa1416280:intron | 25.0% |
! | ATAAGAGAGAATAAAAGCAA+CGG | - | tig0024335:50181-50200 | None:intergenic | 25.0% |
! | GTATCATCTGAATTACATAA+TGG | - | tig0024335:50467-50486 | None:intergenic | 25.0% |
! | GTATCATCTGAATTACATAA+TGG | - | tig0024335:50467-50486 | None:intergenic | 25.0% |
! | TCCTGTAAAATCTATCATAT+TGG | + | tig0024335:50888-50907 | Msa1416280:intron | 25.0% |
! | TTTCTTCAAAATGTTTCATG+TGG | + | tig0024335:51349-51368 | Msa1416280:CDS | 25.0% |
! | TGTAGTTGAAAATTTGAAAG+GGG | - | tig0024335:51529-51548 | None:intergenic | 25.0% |
! | TTGAAAAACAGAAACATTGA+CGG | + | tig0024335:51736-51755 | Msa1416280:intron | 25.0% |
!!! | TTTTTTACTGTCGTGTATAT+CGG | + | tig0024335:51837-51856 | Msa1416280:CDS | 25.0% |
! | ACACATTGTATCAACAAAAA+AGG | - | tig0024335:51877-51896 | None:intergenic | 25.0% |
!! | TTTTTGTTGATACAATGTGT+TGG | + | tig0024335:51877-51896 | Msa1416280:intron | 25.0% |
! | CTGTTGAAATAGTATTTCAT+CGG | + | tig0024335:52004-52023 | Msa1416280:intron | 25.0% |
!!! | CTTTGTTTTGTTATGTCTTA+AGG | + | tig0024335:52267-52286 | Msa1416280:intron | 25.0% |
! | AGATAATTCAGAAAAGTGTG+TGG | - | tig0024335:48952-48971 | None:intergenic | 30.0% |
AGCAATGAAGTGAAAAGTTA+CGG | - | tig0024335:48986-49005 | None:intergenic | 30.0% | |
TCTGAAAAACTGTTTGAATG+TGG | + | tig0024335:49204-49223 | Msa1416280:intron | 30.0% | |
TCTTATGAATCACAATTCAG+AGG | - | tig0024335:49320-49339 | None:intergenic | 30.0% | |
TTGAAAGCAGAAAAGCAAAA+GGG | - | tig0024335:49367-49386 | None:intergenic | 30.0% | |
TTTGAAAGCAGAAAAGCAAA+AGG | - | tig0024335:49368-49387 | None:intergenic | 30.0% | |
AAAAGCAAAGTTGAAGAACA+AGG | - | tig0024335:49442-49461 | None:intergenic | 30.0% | |
TAGCGAAAATGAAAAGCAAA+TGG | + | tig0024335:49619-49638 | Msa1416280:intron | 30.0% | |
AGCGAAAATGAAAAGCAAAT+GGG | + | tig0024335:49620-49639 | Msa1416280:intron | 30.0% | |
! | CATGATTTTCTGCATTTTCA+AGG | - | tig0024335:49893-49912 | None:intergenic | 30.0% |
CTTGAAAATGCAGAAAATCA+TGG | + | tig0024335:49891-49910 | Msa1416280:intron | 30.0% | |
!! | TTGTGTCGACTTAATCATAA+TGG | + | tig0024335:50227-50246 | Msa1416280:intron | 30.0% |
! | TCAACAATTGAAAGCCTTAT+AGG | + | tig0024335:50409-50428 | Msa1416280:intron | 30.0% |
CAAACATCAATCACTAATCA+TGG | - | tig0024335:50589-50608 | None:intergenic | 30.0% | |
TTAGTGATTGATGTTTGCAA+CGG | + | tig0024335:50592-50611 | Msa1416280:intron | 30.0% | |
TCCAAACAGTTTATTGAACT+GGG | - | tig0024335:50801-50820 | None:intergenic | 30.0% | |
! | ATTTTCCACCACCTAAAATA+TGG | - | tig0024335:50841-50860 | None:intergenic | 30.0% |
! | GCCAATATGATAGATTTTAC+AGG | - | tig0024335:50892-50911 | None:intergenic | 30.0% |
CAAAAGAAGAAATTCAAGGA+TGG | - | tig0024335:51151-51170 | None:intergenic | 30.0% | |
CAGACAAAAGAAGAAATTCA+AGG | - | tig0024335:51155-51174 | None:intergenic | 30.0% | |
CTTTGTTAATATTGCAACTG+CGG | + | tig0024335:51297-51316 | Msa1416280:CDS | 30.0% | |
TTTGAAGAAACCTTAAACCA+CGG | - | tig0024335:51339-51358 | None:intergenic | 30.0% | |
GACAATGAAAAATCTCAAGA+GGG | - | tig0024335:51493-51512 | None:intergenic | 30.0% | |
! | GATTTTATATTTAGAGACGG+AGG | + | tig0024335:51698-51717 | Msa1416280:intron | 30.0% |
CATTGTATCAACAAAAAAGG+AGG | - | tig0024335:51874-51893 | None:intergenic | 30.0% | |
TCAAGAATTCTCTCTTTGTT+TGG | - | tig0024335:52050-52069 | None:intergenic | 30.0% | |
TTTCTCACTTGTGATGAAAT+TGG | + | tig0024335:52485-52504 | Msa1416280:three_prime_UTR | 30.0% | |
TTCTCACTTGTGATGAAATT+GGG | + | tig0024335:52486-52505 | Msa1416280:three_prime_UTR | 30.0% | |
!!! | TGTGTTTGTTGCTTTTACTT+TGG | + | tig0024335:52516-52535 | Msa1416280:three_prime_UTR | 30.0% |
!! | CTTTTCACTTCATTGCTGTT+TGG | + | tig0024335:48989-49008 | Msa1416280:five_prime_UTR | 35.0% |
TTTGAATGTGGTTGTGAGAA+GGG | + | tig0024335:49216-49235 | Msa1416280:intron | 35.0% | |
! | ATCACAATTCAGAGGCATAA+AGG | - | tig0024335:49312-49331 | None:intergenic | 35.0% |
ATGGAAAGCAAATTCAACCA+TGG | - | tig0024335:49591-49610 | None:intergenic | 35.0% | |
GCTTAAAAACCTTGATGTTG+CGG | + | tig0024335:49952-49971 | Msa1416280:intron | 35.0% | |
!!! | GACCTTTTTGGTTTGTGAAA+CGG | + | tig0024335:50029-50048 | Msa1416280:intron | 35.0% |
! | GTCAAACTTTTAGCAAAGCT+CGG | - | tig0024335:50254-50273 | None:intergenic | 35.0% |
TTCATTCCATGTAGAAGTGA+AGG | + | tig0024335:50760-50779 | Msa1416280:CDS | 35.0% | |
AAACAGTTTATTGAACTGGG+AGG | - | tig0024335:50798-50817 | None:intergenic | 35.0% | |
TCCCAGTTCAATAAACTGTT+TGG | + | tig0024335:50797-50816 | Msa1416280:CDS | 35.0% | |
GTCCAAACAGTTTATTGAAC+TGG | - | tig0024335:50802-50821 | None:intergenic | 35.0% | |
! | AAACCTGTGCACCATATTTT+AGG | + | tig0024335:50827-50846 | Msa1416280:CDS | 35.0% |
! | CTATATGGCTCCTTTTTGAA+TGG | + | tig0024335:51021-51040 | Msa1416280:CDS | 35.0% |
TCATGTCTGTACAGTTTCTT+TGG | + | tig0024335:51090-51109 | Msa1416280:CDS | 35.0% | |
TTTCTTTGGACAAATGCTTC+CGG | + | tig0024335:51104-51123 | Msa1416280:CDS | 35.0% | |
CTTCAAAATGTTTCATGTGG+AGG | + | tig0024335:51352-51371 | Msa1416280:CDS | 35.0% | |
GGACAATGAAAAATCTCAAG+AGG | - | tig0024335:51494-51513 | None:intergenic | 35.0% | |
!! | TGAAAGGGGCCTTTTAAAAA+AGG | - | tig0024335:51515-51534 | None:intergenic | 35.0% |
TTTATATTTAGAGACGGAGG+TGG | + | tig0024335:51701-51720 | Msa1416280:intron | 35.0% | |
ATCATGCTTAAAACATCTGC+AGG | + | tig0024335:51767-51786 | Msa1416280:intron | 35.0% | |
AACAGCAAACTCGGTTAATT+GGG | - | tig0024335:52116-52135 | None:intergenic | 35.0% | |
TAACAGCAAACTCGGTTAAT+TGG | - | tig0024335:52117-52136 | None:intergenic | 35.0% | |
TTACCACGAAACACTTAACA+AGG | - | tig0024335:52179-52198 | None:intergenic | 35.0% | |
! | GATTGATAACTTCGTGTACA+AGG | + | tig0024335:52341-52360 | Msa1416280:CDS | 35.0% |
ATCAGATGCAAAACCAGTAT+AGG | + | tig0024335:52370-52389 | Msa1416280:CDS | 35.0% | |
TATCCAAGCTTCTTTCCTTT+GGG | - | tig0024335:52426-52445 | None:intergenic | 35.0% | |
GTTTGAATGTGGTTGTGAGA+AGG | + | tig0024335:49215-49234 | Msa1416280:intron | 40.0% | |
TGTGAGAAGGGAATTGACTA+TGG | + | tig0024335:49228-49247 | Msa1416280:intron | 40.0% | |
TCAACCATGGAAAGACACTT+TGG | - | tig0024335:49578-49597 | None:intergenic | 40.0% | |
TCCTAATGTCTGACATGCAT+CGG | + | tig0024335:49680-49699 | Msa1416280:intron | 40.0% | |
TATACCCGTGCTTCATAGAT+GGG | + | tig0024335:49835-49854 | Msa1416280:intron | 40.0% | |
TAATCAATGCAGCCTCAATG+TGG | + | tig0024335:49921-49940 | Msa1416280:intron | 40.0% | |
AAGCTTCTACAACCACATTG+AGG | - | tig0024335:49936-49955 | None:intergenic | 40.0% | |
! | GAATGCTGTCTTGACCTTTT+TGG | + | tig0024335:50017-50036 | Msa1416280:intron | 40.0% |
GTCCGTTTCACAAACCAAAA+AGG | - | tig0024335:50034-50053 | None:intergenic | 40.0% | |
TTATCATAAAGACCAGCCTG+TGG | + | tig0024335:50197-50216 | Msa1416280:intron | 40.0% | |
! | CGACTTGTGACTTTTGTGAT+TGG | - | tig0024335:50337-50356 | None:intergenic | 40.0% |
TTGATGTTTGCAACGGTGTT+AGG | + | tig0024335:50599-50618 | Msa1416280:intron | 40.0% | |
AGTTTGCCTTCACTTCTACA+TGG | - | tig0024335:50769-50788 | None:intergenic | 40.0% | |
AGTTGTTGCAGCGGTTAAAA+CGG | - | tig0024335:51003-51022 | None:intergenic | 40.0% | |
TAACCGCTGCAACAACTATA+TGG | + | tig0024335:51006-51025 | Msa1416280:CDS | 40.0% | |
ACATGACAAGAACAAGAGCT+AGG | - | tig0024335:51076-51095 | None:intergenic | 40.0% | |
! | TTGTTTCTTTCCGTAGTGAC+AGG | + | tig0024335:51233-51252 | Msa1416280:intron | 40.0% |
GTTAATATTGCAACTGCGGT+TGG | + | tig0024335:51301-51320 | Msa1416280:CDS | 40.0% | |
TCAAGAGGGTCCTATATTTG+GGG | - | tig0024335:51479-51498 | None:intergenic | 40.0% | |
CTCAAGAGGGTCCTATATTT+GGG | - | tig0024335:51480-51499 | None:intergenic | 40.0% | |
TCTCAAGAGGGTCCTATATT+TGG | - | tig0024335:51481-51500 | None:intergenic | 40.0% | |
! | TGTTCTGCTACTTGCAATGA+TGG | + | tig0024335:51592-51611 | Msa1416280:intron | 40.0% |
TGCAGGTTGTAGTATGCTTA+TGG | + | tig0024335:51784-51803 | Msa1416280:intron | 40.0% | |
GCAGGTTGTAGTATGCTTAT+GGG | + | tig0024335:51785-51804 | Msa1416280:intron | 40.0% | |
!! | AACCGAGTTTGCTGTTATCT+CGG | + | tig0024335:52120-52139 | Msa1416280:intron | 40.0% |
TCACCTTGTTAAGTGTTTCG+TGG | + | tig0024335:52173-52192 | Msa1416280:intron | 40.0% | |
TCATACCTTTCGTAGAGAAC+CGG | - | tig0024335:52315-52334 | None:intergenic | 40.0% | |
GATGCAAAACCAGTATAGGA+AGG | + | tig0024335:52374-52393 | Msa1416280:CDS | 40.0% | |
TTGCTTAGCAAAATCCCCAA+AGG | + | tig0024335:52408-52427 | Msa1416280:CDS | 40.0% | |
ATCCAAGCTTCTTTCCTTTG+GGG | - | tig0024335:52425-52444 | None:intergenic | 40.0% | |
CTATCCAAGCTTCTTTCCTT+TGG | - | tig0024335:52427-52446 | None:intergenic | 40.0% | |
ATTAGGACACGCCTAATCCA+AGG | - | tig0024335:49667-49686 | None:intergenic | 45.0% | |
ACCGATGCATGTCAGACATT+AGG | - | tig0024335:49684-49703 | None:intergenic | 45.0% | |
GTGTCTGTGTCTATACTGTC+TGG | + | tig0024335:49802-49821 | Msa1416280:intron | 45.0% | |
CTATACCCGTGCTTCATAGA+TGG | + | tig0024335:49834-49853 | Msa1416280:intron | 45.0% | |
TGTTCCCATCTATGAAGCAC+GGG | - | tig0024335:49842-49861 | None:intergenic | 45.0% | |
GTGTTCCCATCTATGAAGCA+CGG | - | tig0024335:49843-49862 | None:intergenic | 45.0% | |
GTGCTTCATAGATGGGAACA+CGG | + | tig0024335:49842-49861 | Msa1416280:intron | 45.0% | |
ACAATCTGCAACCGCAATTG+CGG | - | tig0024335:49978-49997 | None:intergenic | 45.0% | |
! | AGCCTTATAGGCTCTAGTTG+AGG | + | tig0024335:50421-50440 | Msa1416280:intron | 45.0% |
! | GCCTTATAGGCTCTAGTTGA+GGG | + | tig0024335:50422-50441 | Msa1416280:intron | 45.0% |
ACCCTCAACTAGAGCCTATA+AGG | - | tig0024335:50426-50445 | None:intergenic | 45.0% | |
! | GGTGTTCAGAAGCTTTTCAG+CGG | - | tig0024335:50705-50724 | None:intergenic | 45.0% |
AAAGCTTCTGAACACCTTCG+TGG | + | tig0024335:50709-50728 | Msa1416280:CDS | 45.0% | |
AACACCTTCGTGGAAACACT+TGG | + | tig0024335:50719-50738 | Msa1416280:CDS | 45.0% | |
CCACCTAAAATATGGTGCAC+AGG | - | tig0024335:50833-50852 | None:intergenic | 45.0% | |
!! | CCTGTGCACCATATTTTAGG+TGG | + | tig0024335:50830-50849 | Msa1416280:CDS | 45.0% |
!! | GTGCACCATATTTTAGGTGG+TGG | + | tig0024335:50833-50852 | Msa1416280:CDS | 45.0% |
TAGCTGCTGATGTCATGTTG+TGG | + | tig0024335:50955-50974 | Msa1416280:intron | 45.0% | |
TGCTGATGTCATGTTGTGGA+GGG | + | tig0024335:50959-50978 | Msa1416280:CDS | 45.0% | |
GAGCCATATAGTTGTTGCAG+CGG | - | tig0024335:51012-51031 | None:intergenic | 45.0% | |
GAGCTAGGCATAGAAGTGAT+AGG | - | tig0024335:51061-51080 | None:intergenic | 45.0% | |
GAATAACCTGCTAAACACGC+CGG | - | tig0024335:51126-51145 | None:intergenic | 45.0% | |
TTTCTTTCCGTAGTGACAGG+AGG | + | tig0024335:51236-51255 | Msa1416280:intron | 45.0% | |
! | ACCAAACGAGGAGCTTTTGA+TGG | - | tig0024335:51262-51281 | None:intergenic | 45.0% |
CTGAGGTTAACCGTGGTTTA+AGG | + | tig0024335:51326-51345 | Msa1416280:CDS | 45.0% | |
CAAGAGGGTCCTATATTTGG+GGG | - | tig0024335:51478-51497 | None:intergenic | 45.0% | |
GTTGTAGTATGCTTATGGGC+TGG | + | tig0024335:51789-51808 | Msa1416280:CDS | 45.0% | |
CACCGAGATAACAGCAAACT+CGG | - | tig0024335:52125-52144 | None:intergenic | 45.0% | |
!! | TTTGCTGTTATCTCGGTGTG+TGG | + | tig0024335:52127-52146 | Msa1416280:intron | 45.0% |
CATACCTTTCGTAGAGAACC+GGG | - | tig0024335:52314-52333 | None:intergenic | 45.0% | |
GCAAAACCAGTATAGGAAGG+TGG | + | tig0024335:52377-52396 | Msa1416280:CDS | 45.0% | |
CAGAATCCACCTTCCTATAC+TGG | - | tig0024335:52386-52405 | None:intergenic | 45.0% | |
! | CAGTATAGGAAGGTGGATTC+TGG | + | tig0024335:52384-52403 | Msa1416280:CDS | 45.0% |
ATCCCCAAAGGAAAGAAGCT+TGG | + | tig0024335:52420-52439 | Msa1416280:CDS | 45.0% | |
CAAACCAGAATGCGAGCAGA+GGG | - | tig0024335:49024-49043 | None:intergenic | 50.0% | |
TCAAACCAGAATGCGAGCAG+AGG | - | tig0024335:49025-49044 | None:intergenic | 50.0% | |
CCATGGAAAGACACTTTGGC+AGG | - | tig0024335:49574-49593 | None:intergenic | 50.0% | |
! | CCTGCCAAAGTGTCTTTCCA+TGG | + | tig0024335:49571-49590 | Msa1416280:intron | 50.0% |
!! | AAGGAGCGTCTCTGCTTCAT+AGG | - | tig0024335:49648-49667 | None:intergenic | 50.0% |
TATGAAGCAGAGACGCTCCT+TGG | + | tig0024335:49647-49666 | Msa1416280:intron | 50.0% | |
! | TGTCAGTGTCGTGTTGGTGT+CGG | - | tig0024335:49709-49728 | None:intergenic | 50.0% |
ATCAGGTGTCAGTGTCGTGT+TGG | - | tig0024335:49715-49734 | None:intergenic | 50.0% | |
GTTTCTGTGTGTGTCGTGTC+TGG | + | tig0024335:49780-49799 | Msa1416280:intron | 50.0% | |
CAAGACAGCATTCCCACTCA+AGG | - | tig0024335:50010-50029 | None:intergenic | 50.0% | |
TCCAGTCAAGTGCAGGAATC+TGG | + | tig0024335:50148-50167 | Msa1416280:intron | 50.0% | |
CCAGTCAAGTGCAGGAATCT+GGG | + | tig0024335:50149-50168 | Msa1416280:intron | 50.0% | |
TCGACACAATCACACACCAC+AGG | - | tig0024335:50216-50235 | None:intergenic | 50.0% | |
! | TGCAACGGTGTTAGGCATGA+TGG | + | tig0024335:50607-50626 | Msa1416280:intron | 50.0% |
CTGCTGATGTCATGTTGTGG+AGG | + | tig0024335:50958-50977 | Msa1416280:CDS | 50.0% | |
! | TTGATGGCCTCCTGTCACTA+CGG | - | tig0024335:51246-51265 | None:intergenic | 50.0% |
GCCATCAAAAGCTCCTCGTT+TGG | + | tig0024335:51258-51277 | Msa1416280:CDS | 50.0% | |
TCTTTCGGGAGAACCAAACG+AGG | - | tig0024335:51274-51293 | None:intergenic | 50.0% | |
! | GTTGGTACTGAGGTTAACCG+TGG | + | tig0024335:51319-51338 | Msa1416280:CDS | 50.0% |
!! | TTATGGGCTGGTGCTGTGAT+TGG | + | tig0024335:51801-51820 | Msa1416280:CDS | 50.0% |
!! | TATGGGCTGGTGCTGTGATT+GGG | + | tig0024335:51802-51821 | Msa1416280:CDS | 50.0% |
TGTTGCTGCACATACACTCC+CGG | + | tig0024335:52293-52312 | Msa1416280:CDS | 50.0% | |
ACTTCCCTCTGCTCGCATTC+TGG | + | tig0024335:49017-49036 | Msa1416280:five_prime_UTR | 55.0% | |
GCAGAGACGCTCCTTGGATT+AGG | + | tig0024335:49653-49672 | Msa1416280:intron | 55.0% | |
CAATTGCGGCCGCAACATCA+AGG | - | tig0024335:49964-49983 | None:intergenic | 55.0% | |
TGATGTTGCGGCCGCAATTG+CGG | + | tig0024335:49964-49983 | Msa1416280:intron | 55.0% | |
TGCACAGTCCAGTCAAGTGC+AGG | + | tig0024335:50141-50160 | Msa1416280:intron | 55.0% | |
CCCAGATTCCTGCACTTGAC+TGG | - | tig0024335:50152-50171 | None:intergenic | 55.0% | |
CACAATCACACACCACAGGC+TGG | - | tig0024335:50212-50231 | None:intergenic | 55.0% | |
CTCGCCAAGTGTTTCCACGA+AGG | - | tig0024335:50726-50745 | None:intergenic | 55.0% | |
TCGTGGAAACACTTGGCGAG+AGG | + | tig0024335:50726-50745 | Msa1416280:CDS | 55.0% | |
CTTGGCGAGAGGCAAAAGTC+TGG | + | tig0024335:50737-50756 | Msa1416280:CDS | 55.0% | |
ATGCTTCCGGCGTGTTTAGC+AGG | + | tig0024335:51117-51136 | Msa1416280:CDS | 55.0% | |
! | TGCAACTGCGGTTGGTACTG+AGG | + | tig0024335:51309-51328 | Msa1416280:CDS | 55.0% |
CTACCTCCGCCCCCAAATAT+AGG | + | tig0024335:51466-51485 | Msa1416280:intron | 55.0% | |
GAGGGTCCTATATTTGGGGG+CGG | - | tig0024335:51475-51494 | None:intergenic | 55.0% | |
!! | CTGGTGCTGTGATTGGGAAC+TGG | + | tig0024335:51808-51827 | Msa1416280:CDS | 55.0% |
CACTCCCGGTTCTCTACGAA+AGG | + | tig0024335:52307-52326 | Msa1416280:CDS | 55.0% | |
GGTCCTATATTTGGGGGCGG+AGG | - | tig0024335:51472-51491 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024335 | gene | 48935 | 52578 | 48935 | ID=Msa1416280;Name=Msa1416280 |
tig0024335 | mRNA | 48935 | 52578 | 48935 | ID=Msa1416280-mRNA-1;Parent=Msa1416280;Name=Msa1416280-mRNA-1;_AED=0.17;_eAED=0.17;_QI=118|1|1|1|0.8|0.66|6|132|243 |
tig0024335 | exon | 48935 | 49038 | 48935 | ID=Msa1416280-mRNA-1:exon:22833;Parent=Msa1416280-mRNA-1 |
tig0024335 | exon | 50672 | 50860 | 50672 | ID=Msa1416280-mRNA-1:exon:22834;Parent=Msa1416280-mRNA-1 |
tig0024335 | exon | 50958 | 51138 | 50958 | ID=Msa1416280-mRNA-1:exon:22835;Parent=Msa1416280-mRNA-1 |
tig0024335 | exon | 51249 | 51396 | 51249 | ID=Msa1416280-mRNA-1:exon:22836;Parent=Msa1416280-mRNA-1 |
tig0024335 | exon | 51789 | 51858 | 51789 | ID=Msa1416280-mRNA-1:exon:22837;Parent=Msa1416280-mRNA-1 |
tig0024335 | exon | 52289 | 52578 | 52289 | ID=Msa1416280-mRNA-1:exon:22838;Parent=Msa1416280-mRNA-1 |
tig0024335 | five_prime_UTR | 48935 | 49038 | 48935 | ID=Msa1416280-mRNA-1:five_prime_utr;Parent=Msa1416280-mRNA-1 |
tig0024335 | five_prime_UTR | 50672 | 50685 | 50672 | ID=Msa1416280-mRNA-1:five_prime_utr;Parent=Msa1416280-mRNA-1 |
tig0024335 | CDS | 50686 | 50860 | 50686 | ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1 |
tig0024335 | CDS | 50958 | 51138 | 50958 | ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1 |
tig0024335 | CDS | 51249 | 51396 | 51249 | ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1 |
tig0024335 | CDS | 51789 | 51858 | 51789 | ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1 |
tig0024335 | CDS | 52289 | 52446 | 52289 | ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1 |
tig0024335 | three_prime_UTR | 52447 | 52578 | 52447 | ID=Msa1416280-mRNA-1:three_prime_utr;Parent=Msa1416280-mRNA-1 |
Gene Sequence |
Protein sequence |