AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416280 MtrunA17_Chr5g0442361 97.107 242 6 1 1 242 1 241 2.26e-175 481
Msa1416280 MtrunA17_Chr3g0095441 65.217 230 78 1 1 230 1 228 1.24e-111 320
Msa1416280 MtrunA17_Chr8g0387631 47.418 213 107 2 30 239 42 252 8.22e-69 212
Msa1416280 MtrunA17_Chr8g0348131 44.286 210 111 2 34 239 53 260 2.69e-62 196
Msa1416280 MtrunA17_Chr1g0202401 40.306 196 115 2 42 237 50 243 2.89e-54 175
Msa1416280 MtrunA17_Chr8g0376101 40.500 200 111 2 43 239 21 215 1.54e-52 169
Msa1416280 MtrunA17_Chr1g0209261 36.181 199 115 4 43 239 10 198 2.44e-40 137
Msa1416280 MtrunA17_Chr3g0108661 32.979 188 124 1 41 228 45 230 7.21e-34 122
Msa1416280 MtrunA17_Chr4g0005701 33.163 196 129 1 41 236 5 198 1.30e-29 110
Msa1416280 MtrunA17_Chr6g0453331 31.111 180 122 1 60 239 14 191 5.13e-27 103
Msa1416280 MtrunA17_Chr5g0402811 30.939 181 123 1 55 235 29 207 9.85e-24 95.1
Msa1416280 MtrunA17_Chr1g0208091 33.511 188 123 1 50 237 9 194 1.38e-23 94.4
Msa1416280 MtrunA17_Chr5g0402701 33.333 144 94 1 62 205 344 485 2.91e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416280 AT3G10260.1 56.710 231 96 3 10 240 14 240 2.06e-97 285
Msa1416280 AT3G10260.2 56.710 231 96 3 10 240 14 240 2.06e-97 285
Msa1416280 AT3G10260.3 56.710 231 96 3 10 240 34 260 4.43e-97 285
Msa1416280 AT2G46170.1 45.098 204 110 1 34 237 43 244 6.39e-66 205
Msa1416280 AT3G61560.1 44.118 204 112 1 34 237 43 244 2.10e-64 201
Msa1416280 AT3G61560.2 44.118 204 112 1 34 237 43 244 2.10e-64 201
Msa1416280 AT1G64090.1 40.758 211 119 2 33 239 38 246 1.52e-58 186
Msa1416280 AT4G23630.1 39.899 198 117 1 42 239 72 267 5.89e-58 185
Msa1416280 AT4G23630.2 39.899 198 117 1 42 239 72 267 5.89e-58 185
Msa1416280 AT4G11220.1 37.374 198 122 1 42 239 68 263 2.90e-57 183
Msa1416280 AT5G41600.1 41.089 202 113 3 42 239 51 250 9.10e-56 179
Msa1416280 AT1G64090.2 38.222 225 117 3 35 239 40 262 1.36e-54 177
Msa1416280 AT3G18260.1 38.191 199 121 1 41 239 21 217 7.01e-50 163
Msa1416280 AT4G01230.2 38.916 203 119 1 35 237 46 243 7.96e-50 164
Msa1416280 AT3G61560.3 45.570 158 84 1 34 191 43 198 1.26e-47 157
Msa1416280 AT4G01230.1 37.931 203 119 2 35 237 46 241 1.69e-46 155
Msa1416280 AT2G46170.2 41.912 136 77 1 34 169 43 176 1.17e-35 125
Msa1416280 AT3G10915.2 30.348 201 138 1 37 237 19 217 1.09e-34 124
Msa1416280 AT3G10915.7 29.808 208 144 1 29 236 36 241 1.65e-34 124
Msa1416280 AT3G10915.4 30.198 202 138 2 37 237 19 218 6.27e-33 119
Msa1416280 AT2G15280.1 33.158 190 125 1 47 236 2 189 1.23e-32 118
Msa1416280 AT1G68230.2 33.161 193 121 3 50 240 22 208 4.95e-28 106
Msa1416280 AT3G10915.5 27.232 224 138 3 37 237 19 240 1.59e-27 106
Msa1416280 AT3G10915.6 28.415 183 129 1 54 236 4 184 1.06e-26 102
Msa1416280 AT3G19460.1 31.073 177 120 1 51 227 14 188 1.09e-26 102
Msa1416280 AT3G19460.5 31.073 177 120 1 51 227 14 188 1.09e-26 102
Msa1416280 AT3G19460.4 31.073 177 120 1 51 227 14 188 1.09e-26 102
Msa1416280 AT3G10915.3 28.652 178 125 1 59 236 8 183 1.77e-26 102
Msa1416280 AT3G54120.1 28.708 209 142 3 36 243 1 203 7.00e-22 90.1
Msa1416280 AT3G19460.3 27.103 214 114 5 51 227 14 222 3.62e-20 86.3
Msa1416280 AT3G19460.7 27.103 214 114 5 51 227 14 222 3.62e-20 86.3
Msa1416280 AT1G68230.1 33.793 145 88 3 50 192 22 160 4.77e-17 76.3
Msa1416280 AT3G10915.1 31.200 125 84 1 42 166 24 146 7.68e-17 75.9
Msa1416280 AT2G23640.1 24.713 174 129 1 61 234 18 189 7.15e-15 71.2
Msa1416280 AT2G15280.2 23.684 190 104 2 47 236 2 150 1.23e-11 61.6

Find 67 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCACTTGTGATGAAAT+TGG 0.144159 tig0024335:+52485 Msa1416280:three_prime_UTR
TAGATTCATGTTTATGTAAA+TGG 0.146269 tig0024335:+52444 Msa1416280:exon
TGCAGGTTGTAGTATGCTTA+TGG 0.271495 tig0024335:+51784 Msa1416280:intron
TCATGTCTGTACAGTTTCTT+TGG 0.274156 tig0024335:+51090 Msa1416280:CDS
CTGAGGTTAACCGTGGTTTA+AGG 0.278401 tig0024335:+51326 Msa1416280:CDS
ACTTCCCTCTGCTCGCATTC+TGG 0.281803 tig0024335:+49017 Msa1416280:five_prime_UTR
TATCCAAGCTTCTTTCCTTT+GGG 0.285834 tig0024335:-52423 None:intergenic
TATAATTAAGCCATTCAAAA+AGG 0.291332 tig0024335:-51031 None:intergenic
CAGTATAGGAAGGTGGATTC+TGG 0.314712 tig0024335:+52384 Msa1416280:CDS
CTATCCAAGCTTCTTTCCTT+TGG 0.317711 tig0024335:-52424 None:intergenic
TATTAACAAAGAAATCTTTC+GGG 0.323201 tig0024335:-51285 None:intergenic
CAGAATCCACCTTCCTATAC+TGG 0.327594 tig0024335:-52383 None:intergenic
GTCCAAACAGTTTATTGAAC+TGG 0.330990 tig0024335:-50799 None:intergenic
TAACCGCTGCAACAACTATA+TGG 0.340621 tig0024335:+51006 Msa1416280:CDS
TTCTCACTTGTGATGAAATT+GGG 0.354995 tig0024335:+52486 Msa1416280:three_prime_UTR
ATATTAACAAAGAAATCTTT+CGG 0.374090 tig0024335:-51286 None:intergenic
CTGGTGCTGTGATTGGGAAC+TGG 0.386885 tig0024335:+51808 Msa1416280:CDS
ATGCTTCCGGCGTGTTTAGC+AGG 0.400253 tig0024335:+51117 Msa1416280:CDS
TCCCAGTTCAATAAACTGTT+TGG 0.402640 tig0024335:+50797 Msa1416280:CDS
TTATGGGCTGGTGCTGTGAT+TGG 0.407728 tig0024335:+51801 Msa1416280:CDS
TTTCTTTGGACAAATGCTTC+CGG 0.425537 tig0024335:+51104 Msa1416280:CDS
GCCATCAAAAGCTCCTCGTT+TGG 0.430625 tig0024335:+51258 Msa1416280:CDS
TCATACCTTTCGTAGAGAAC+CGG 0.437296 tig0024335:-52312 None:intergenic
GCAGGTTGTAGTATGCTTAT+GGG 0.447620 tig0024335:+51785 Msa1416280:intron
TATGGGCTGGTGCTGTGATT+GGG 0.451379 tig0024335:+51802 Msa1416280:CDS
ATCCAAGCTTCTTTCCTTTG+GGG 0.455010 tig0024335:-52422 None:intergenic
GAGCTAGGCATAGAAGTGAT+AGG 0.455942 tig0024335:-51058 None:intergenic
CTTCAAAATGTTTCATGTGG+AGG 0.472512 tig0024335:+51352 Msa1416280:CDS
AAAGCTTCTGAACACCTTCG+TGG 0.484982 tig0024335:+50709 Msa1416280:CDS
AGTTGTTGCAGCGGTTAAAA+CGG 0.489432 tig0024335:-51000 None:intergenic
AGCAATGAAGTGAAAAGTTA+CGG 0.492166 tig0024335:-48983 None:intergenic
ATCCCCAAAGGAAAGAAGCT+TGG 0.496516 tig0024335:+52420 Msa1416280:CDS
ATCAGATGCAAAACCAGTAT+AGG 0.499744 tig0024335:+52370 Msa1416280:CDS
CTTGGCGAGAGGCAAAAGTC+TGG 0.502330 tig0024335:+50737 Msa1416280:CDS
TTTGAAGAAACCTTAAACCA+CGG 0.502721 tig0024335:-51336 None:intergenic
AGTTTGCCTTCACTTCTACA+TGG 0.505250 tig0024335:-50766 None:intergenic
TCAAACCAGAATGCGAGCAG+AGG 0.526828 tig0024335:-49022 None:intergenic
TGTTGCTGCACATACACTCC+CGG 0.528499 tig0024335:+52293 Msa1416280:CDS
TCCAAACAGTTTATTGAACT+GGG 0.530900 tig0024335:-50798 None:intergenic
GTTAATATTGCAACTGCGGT+TGG 0.530904 tig0024335:+51301 Msa1416280:CDS
GATTGATAACTTCGTGTACA+AGG 0.536766 tig0024335:+52341 Msa1416280:CDS
AACACCTTCGTGGAAACACT+TGG 0.537056 tig0024335:+50719 Msa1416280:CDS
TTTCTTCAAAATGTTTCATG+TGG 0.542392 tig0024335:+51349 Msa1416280:CDS
CCACCTAAAATATGGTGCAC+AGG 0.562386 tig0024335:-50830 None:intergenic
GTTGTAGTATGCTTATGGGC+TGG 0.564353 tig0024335:+51789 Msa1416280:CDS
CATACCTTTCGTAGAGAACC+GGG 0.565792 tig0024335:-52311 None:intergenic
TAGCTGCTGATGTCATGTTG+TGG 0.573484 tig0024335:+50955 Msa1416280:intron
TGCAACTGCGGTTGGTACTG+AGG 0.575677 tig0024335:+51309 Msa1416280:CDS
CTTTGTTAATATTGCAACTG+CGG 0.576367 tig0024335:+51297 Msa1416280:CDS
TTCATTCCATGTAGAAGTGA+AGG 0.576828 tig0024335:+50760 Msa1416280:CDS
CACTCCCGGTTCTCTACGAA+AGG 0.578629 tig0024335:+52307 Msa1416280:CDS
CTGCTGATGTCATGTTGTGG+AGG 0.578920 tig0024335:+50958 Msa1416280:CDS
CAAACCAGAATGCGAGCAGA+GGG 0.599111 tig0024335:-49021 None:intergenic
TTTCTTTCCGTAGTGACAGG+AGG 0.604290 tig0024335:+51236 Msa1416280:intron
TGCTGATGTCATGTTGTGGA+GGG 0.606274 tig0024335:+50959 Msa1416280:CDS
ACATGACAAGAACAAGAGCT+AGG 0.612406 tig0024335:-51073 None:intergenic
CTCGCCAAGTGTTTCCACGA+AGG 0.615062 tig0024335:-50723 None:intergenic
GATGCAAAACCAGTATAGGA+AGG 0.625408 tig0024335:+52374 Msa1416280:CDS
GCAAAACCAGTATAGGAAGG+TGG 0.628367 tig0024335:+52377 Msa1416280:CDS
GAGCCATATAGTTGTTGCAG+CGG 0.636566 tig0024335:-51009 None:intergenic
TCGTGGAAACACTTGGCGAG+AGG 0.645330 tig0024335:+50726 Msa1416280:CDS
TTGCTTAGCAAAATCCCCAA+AGG 0.645417 tig0024335:+52408 Msa1416280:CDS
GTTGGTACTGAGGTTAACCG+TGG 0.658377 tig0024335:+51319 Msa1416280:CDS
GAATAACCTGCTAAACACGC+CGG 0.683282 tig0024335:-51123 None:intergenic
AGATAATTCAGAAAAGTGTG+TGG 0.684590 tig0024335:-48949 None:intergenic
AAACAGTTTATTGAACTGGG+AGG 0.721336 tig0024335:-50795 None:intergenic
TCTTTCGGGAGAACCAAACG+AGG 0.723179 tig0024335:-51271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTATAAAAAAAT+TGG - tig0024335:49393-49412 None:intergenic 0.0%
!! CATTTAGATAAAAATAAAAT+AGG - tig0024335:51181-51200 None:intergenic 10.0%
!!! TTTATTTTTATCTAAATGTA+TGG + tig0024335:51183-51202 Msa1416280:intron 10.0%
!!! TATTTAGAGATAATATTTTT+AGG - tig0024335:51969-51988 None:intergenic 10.0%
!! ATATAAATGATATAATGACA+TGG - tig0024335:49276-49295 None:intergenic 15.0%
!! ATATTAACAAAGAAATCTTT+CGG - tig0024335:51289-51308 None:intergenic 15.0%
!! ACACATGAATTAAAAAAAAT+TGG - tig0024335:51666-51685 None:intergenic 15.0%
!!! TTTTTTAATTCATGTGTTTT+AGG + tig0024335:51669-51688 Msa1416280:intron 15.0%
!!! TATGATTTTATATTTAGAGA+CGG + tig0024335:51695-51714 Msa1416280:intron 15.0%
!!! AATAATTTCTTTTTCTATGT+TGG + tig0024335:52546-52565 Msa1416280:three_prime_UTR 15.0%
!! GAAAGAGATGAAAAAAAAAT+GGG - tig0024335:49056-49075 None:intergenic 20.0%
!! TGAAAGAGATGAAAAAAAAA+TGG - tig0024335:49057-49076 None:intergenic 20.0%
!! TTGAAAAGGATAAAAGAAAA+TGG - tig0024335:49082-49101 None:intergenic 20.0%
!! AAAACATGAATAGATTGAAA+AGG - tig0024335:49096-49115 None:intergenic 20.0%
!! AAAGTCTAGAAATAAATGTA+AGG + tig0024335:49533-49552 Msa1416280:intron 20.0%
!!! CATTTTCGCTAAAAATAAAA+TGG - tig0024335:49610-49629 None:intergenic 20.0%
!! AATCATGGAAAAAATCATAA+TGG - tig0024335:50574-50593 None:intergenic 20.0%
!! TATAATTAAGCCATTCAAAA+AGG - tig0024335:51034-51053 None:intergenic 20.0%
!! TATTAACAAAGAAATCTTTC+GGG - tig0024335:51288-51307 None:intergenic 20.0%
!! GATTATAAATGACAAAACAA+AGG - tig0024335:51425-51444 None:intergenic 20.0%
!!! GTATGTTTTAAGCATAAATA+TGG - tig0024335:51447-51466 None:intergenic 20.0%
!!! TTTCATTGTCCTTTTTTAAA+AGG + tig0024335:51503-51522 Msa1416280:intron 20.0%
!! ATGTAGTTGAAAATTTGAAA+GGG - tig0024335:51530-51549 None:intergenic 20.0%
!! AATGTAGTTGAAAATTTGAA+AGG - tig0024335:51531-51550 None:intergenic 20.0%
!! CAACATAATTAGAGATATAA+TGG - tig0024335:51567-51586 None:intergenic 20.0%
!! AATAATTAGAGAAAACATCA+TGG - tig0024335:51903-51922 None:intergenic 20.0%
!!! GTTTTCTCTAATTATTAAGT+TGG + tig0024335:51907-51926 Msa1416280:intron 20.0%
!!! GTTAAAACTTTGTTATGTTA+CGG + tig0024335:52211-52230 Msa1416280:intron 20.0%
!! TAGATTCATGTTTATGTAAA+TGG + tig0024335:52444-52463 Msa1416280:exon 20.0%
!! GAGATAAAAAGAGAATTTTG+TGG + tig0024335:49338-49357 Msa1416280:intron 25.0%
! TAGAAATAAATGTAAGGACA+TGG + tig0024335:49539-49558 Msa1416280:intron 25.0%
! AGAAATAAATGTAAGGACAT+GGG + tig0024335:49540-49559 Msa1416280:intron 25.0%
! TGACATAATTCAATGTAATC+AGG - tig0024335:49732-49751 None:intergenic 25.0%
!!! TTGTTTTTAAAAACCTTGAG+TGG + tig0024335:49994-50013 Msa1416280:intron 25.0%
!!! TGTTTTTAAAAACCTTGAGT+GGG + tig0024335:49995-50014 Msa1416280:intron 25.0%
! ATAAGAGAGAATAAAAGCAA+CGG - tig0024335:50181-50200 None:intergenic 25.0%
! GTATCATCTGAATTACATAA+TGG - tig0024335:50467-50486 None:intergenic 25.0%
! GTATCATCTGAATTACATAA+TGG - tig0024335:50467-50486 None:intergenic 25.0%
! TCCTGTAAAATCTATCATAT+TGG + tig0024335:50888-50907 Msa1416280:intron 25.0%
! TTTCTTCAAAATGTTTCATG+TGG + tig0024335:51349-51368 Msa1416280:CDS 25.0%
! TGTAGTTGAAAATTTGAAAG+GGG - tig0024335:51529-51548 None:intergenic 25.0%
! TTGAAAAACAGAAACATTGA+CGG + tig0024335:51736-51755 Msa1416280:intron 25.0%
!!! TTTTTTACTGTCGTGTATAT+CGG + tig0024335:51837-51856 Msa1416280:CDS 25.0%
! ACACATTGTATCAACAAAAA+AGG - tig0024335:51877-51896 None:intergenic 25.0%
!! TTTTTGTTGATACAATGTGT+TGG + tig0024335:51877-51896 Msa1416280:intron 25.0%
! CTGTTGAAATAGTATTTCAT+CGG + tig0024335:52004-52023 Msa1416280:intron 25.0%
!!! CTTTGTTTTGTTATGTCTTA+AGG + tig0024335:52267-52286 Msa1416280:intron 25.0%
! AGATAATTCAGAAAAGTGTG+TGG - tig0024335:48952-48971 None:intergenic 30.0%
AGCAATGAAGTGAAAAGTTA+CGG - tig0024335:48986-49005 None:intergenic 30.0%
TCTGAAAAACTGTTTGAATG+TGG + tig0024335:49204-49223 Msa1416280:intron 30.0%
TCTTATGAATCACAATTCAG+AGG - tig0024335:49320-49339 None:intergenic 30.0%
TTGAAAGCAGAAAAGCAAAA+GGG - tig0024335:49367-49386 None:intergenic 30.0%
TTTGAAAGCAGAAAAGCAAA+AGG - tig0024335:49368-49387 None:intergenic 30.0%
AAAAGCAAAGTTGAAGAACA+AGG - tig0024335:49442-49461 None:intergenic 30.0%
TAGCGAAAATGAAAAGCAAA+TGG + tig0024335:49619-49638 Msa1416280:intron 30.0%
AGCGAAAATGAAAAGCAAAT+GGG + tig0024335:49620-49639 Msa1416280:intron 30.0%
! CATGATTTTCTGCATTTTCA+AGG - tig0024335:49893-49912 None:intergenic 30.0%
CTTGAAAATGCAGAAAATCA+TGG + tig0024335:49891-49910 Msa1416280:intron 30.0%
!! TTGTGTCGACTTAATCATAA+TGG + tig0024335:50227-50246 Msa1416280:intron 30.0%
! TCAACAATTGAAAGCCTTAT+AGG + tig0024335:50409-50428 Msa1416280:intron 30.0%
CAAACATCAATCACTAATCA+TGG - tig0024335:50589-50608 None:intergenic 30.0%
TTAGTGATTGATGTTTGCAA+CGG + tig0024335:50592-50611 Msa1416280:intron 30.0%
TCCAAACAGTTTATTGAACT+GGG - tig0024335:50801-50820 None:intergenic 30.0%
! ATTTTCCACCACCTAAAATA+TGG - tig0024335:50841-50860 None:intergenic 30.0%
! GCCAATATGATAGATTTTAC+AGG - tig0024335:50892-50911 None:intergenic 30.0%
CAAAAGAAGAAATTCAAGGA+TGG - tig0024335:51151-51170 None:intergenic 30.0%
CAGACAAAAGAAGAAATTCA+AGG - tig0024335:51155-51174 None:intergenic 30.0%
CTTTGTTAATATTGCAACTG+CGG + tig0024335:51297-51316 Msa1416280:CDS 30.0%
TTTGAAGAAACCTTAAACCA+CGG - tig0024335:51339-51358 None:intergenic 30.0%
GACAATGAAAAATCTCAAGA+GGG - tig0024335:51493-51512 None:intergenic 30.0%
! GATTTTATATTTAGAGACGG+AGG + tig0024335:51698-51717 Msa1416280:intron 30.0%
CATTGTATCAACAAAAAAGG+AGG - tig0024335:51874-51893 None:intergenic 30.0%
TCAAGAATTCTCTCTTTGTT+TGG - tig0024335:52050-52069 None:intergenic 30.0%
TTTCTCACTTGTGATGAAAT+TGG + tig0024335:52485-52504 Msa1416280:three_prime_UTR 30.0%
TTCTCACTTGTGATGAAATT+GGG + tig0024335:52486-52505 Msa1416280:three_prime_UTR 30.0%
!!! TGTGTTTGTTGCTTTTACTT+TGG + tig0024335:52516-52535 Msa1416280:three_prime_UTR 30.0%
!! CTTTTCACTTCATTGCTGTT+TGG + tig0024335:48989-49008 Msa1416280:five_prime_UTR 35.0%
TTTGAATGTGGTTGTGAGAA+GGG + tig0024335:49216-49235 Msa1416280:intron 35.0%
! ATCACAATTCAGAGGCATAA+AGG - tig0024335:49312-49331 None:intergenic 35.0%
ATGGAAAGCAAATTCAACCA+TGG - tig0024335:49591-49610 None:intergenic 35.0%
GCTTAAAAACCTTGATGTTG+CGG + tig0024335:49952-49971 Msa1416280:intron 35.0%
!!! GACCTTTTTGGTTTGTGAAA+CGG + tig0024335:50029-50048 Msa1416280:intron 35.0%
! GTCAAACTTTTAGCAAAGCT+CGG - tig0024335:50254-50273 None:intergenic 35.0%
TTCATTCCATGTAGAAGTGA+AGG + tig0024335:50760-50779 Msa1416280:CDS 35.0%
AAACAGTTTATTGAACTGGG+AGG - tig0024335:50798-50817 None:intergenic 35.0%
TCCCAGTTCAATAAACTGTT+TGG + tig0024335:50797-50816 Msa1416280:CDS 35.0%
GTCCAAACAGTTTATTGAAC+TGG - tig0024335:50802-50821 None:intergenic 35.0%
! AAACCTGTGCACCATATTTT+AGG + tig0024335:50827-50846 Msa1416280:CDS 35.0%
! CTATATGGCTCCTTTTTGAA+TGG + tig0024335:51021-51040 Msa1416280:CDS 35.0%
TCATGTCTGTACAGTTTCTT+TGG + tig0024335:51090-51109 Msa1416280:CDS 35.0%
TTTCTTTGGACAAATGCTTC+CGG + tig0024335:51104-51123 Msa1416280:CDS 35.0%
CTTCAAAATGTTTCATGTGG+AGG + tig0024335:51352-51371 Msa1416280:CDS 35.0%
GGACAATGAAAAATCTCAAG+AGG - tig0024335:51494-51513 None:intergenic 35.0%
!! TGAAAGGGGCCTTTTAAAAA+AGG - tig0024335:51515-51534 None:intergenic 35.0%
TTTATATTTAGAGACGGAGG+TGG + tig0024335:51701-51720 Msa1416280:intron 35.0%
ATCATGCTTAAAACATCTGC+AGG + tig0024335:51767-51786 Msa1416280:intron 35.0%
AACAGCAAACTCGGTTAATT+GGG - tig0024335:52116-52135 None:intergenic 35.0%
TAACAGCAAACTCGGTTAAT+TGG - tig0024335:52117-52136 None:intergenic 35.0%
TTACCACGAAACACTTAACA+AGG - tig0024335:52179-52198 None:intergenic 35.0%
! GATTGATAACTTCGTGTACA+AGG + tig0024335:52341-52360 Msa1416280:CDS 35.0%
ATCAGATGCAAAACCAGTAT+AGG + tig0024335:52370-52389 Msa1416280:CDS 35.0%
TATCCAAGCTTCTTTCCTTT+GGG - tig0024335:52426-52445 None:intergenic 35.0%
GTTTGAATGTGGTTGTGAGA+AGG + tig0024335:49215-49234 Msa1416280:intron 40.0%
TGTGAGAAGGGAATTGACTA+TGG + tig0024335:49228-49247 Msa1416280:intron 40.0%
TCAACCATGGAAAGACACTT+TGG - tig0024335:49578-49597 None:intergenic 40.0%
TCCTAATGTCTGACATGCAT+CGG + tig0024335:49680-49699 Msa1416280:intron 40.0%
TATACCCGTGCTTCATAGAT+GGG + tig0024335:49835-49854 Msa1416280:intron 40.0%
TAATCAATGCAGCCTCAATG+TGG + tig0024335:49921-49940 Msa1416280:intron 40.0%
AAGCTTCTACAACCACATTG+AGG - tig0024335:49936-49955 None:intergenic 40.0%
! GAATGCTGTCTTGACCTTTT+TGG + tig0024335:50017-50036 Msa1416280:intron 40.0%
GTCCGTTTCACAAACCAAAA+AGG - tig0024335:50034-50053 None:intergenic 40.0%
TTATCATAAAGACCAGCCTG+TGG + tig0024335:50197-50216 Msa1416280:intron 40.0%
! CGACTTGTGACTTTTGTGAT+TGG - tig0024335:50337-50356 None:intergenic 40.0%
TTGATGTTTGCAACGGTGTT+AGG + tig0024335:50599-50618 Msa1416280:intron 40.0%
AGTTTGCCTTCACTTCTACA+TGG - tig0024335:50769-50788 None:intergenic 40.0%
AGTTGTTGCAGCGGTTAAAA+CGG - tig0024335:51003-51022 None:intergenic 40.0%
TAACCGCTGCAACAACTATA+TGG + tig0024335:51006-51025 Msa1416280:CDS 40.0%
ACATGACAAGAACAAGAGCT+AGG - tig0024335:51076-51095 None:intergenic 40.0%
! TTGTTTCTTTCCGTAGTGAC+AGG + tig0024335:51233-51252 Msa1416280:intron 40.0%
GTTAATATTGCAACTGCGGT+TGG + tig0024335:51301-51320 Msa1416280:CDS 40.0%
TCAAGAGGGTCCTATATTTG+GGG - tig0024335:51479-51498 None:intergenic 40.0%
CTCAAGAGGGTCCTATATTT+GGG - tig0024335:51480-51499 None:intergenic 40.0%
TCTCAAGAGGGTCCTATATT+TGG - tig0024335:51481-51500 None:intergenic 40.0%
! TGTTCTGCTACTTGCAATGA+TGG + tig0024335:51592-51611 Msa1416280:intron 40.0%
TGCAGGTTGTAGTATGCTTA+TGG + tig0024335:51784-51803 Msa1416280:intron 40.0%
GCAGGTTGTAGTATGCTTAT+GGG + tig0024335:51785-51804 Msa1416280:intron 40.0%
!! AACCGAGTTTGCTGTTATCT+CGG + tig0024335:52120-52139 Msa1416280:intron 40.0%
TCACCTTGTTAAGTGTTTCG+TGG + tig0024335:52173-52192 Msa1416280:intron 40.0%
TCATACCTTTCGTAGAGAAC+CGG - tig0024335:52315-52334 None:intergenic 40.0%
GATGCAAAACCAGTATAGGA+AGG + tig0024335:52374-52393 Msa1416280:CDS 40.0%
TTGCTTAGCAAAATCCCCAA+AGG + tig0024335:52408-52427 Msa1416280:CDS 40.0%
ATCCAAGCTTCTTTCCTTTG+GGG - tig0024335:52425-52444 None:intergenic 40.0%
CTATCCAAGCTTCTTTCCTT+TGG - tig0024335:52427-52446 None:intergenic 40.0%
ATTAGGACACGCCTAATCCA+AGG - tig0024335:49667-49686 None:intergenic 45.0%
ACCGATGCATGTCAGACATT+AGG - tig0024335:49684-49703 None:intergenic 45.0%
GTGTCTGTGTCTATACTGTC+TGG + tig0024335:49802-49821 Msa1416280:intron 45.0%
CTATACCCGTGCTTCATAGA+TGG + tig0024335:49834-49853 Msa1416280:intron 45.0%
TGTTCCCATCTATGAAGCAC+GGG - tig0024335:49842-49861 None:intergenic 45.0%
GTGTTCCCATCTATGAAGCA+CGG - tig0024335:49843-49862 None:intergenic 45.0%
GTGCTTCATAGATGGGAACA+CGG + tig0024335:49842-49861 Msa1416280:intron 45.0%
ACAATCTGCAACCGCAATTG+CGG - tig0024335:49978-49997 None:intergenic 45.0%
! AGCCTTATAGGCTCTAGTTG+AGG + tig0024335:50421-50440 Msa1416280:intron 45.0%
! GCCTTATAGGCTCTAGTTGA+GGG + tig0024335:50422-50441 Msa1416280:intron 45.0%
ACCCTCAACTAGAGCCTATA+AGG - tig0024335:50426-50445 None:intergenic 45.0%
! GGTGTTCAGAAGCTTTTCAG+CGG - tig0024335:50705-50724 None:intergenic 45.0%
AAAGCTTCTGAACACCTTCG+TGG + tig0024335:50709-50728 Msa1416280:CDS 45.0%
AACACCTTCGTGGAAACACT+TGG + tig0024335:50719-50738 Msa1416280:CDS 45.0%
CCACCTAAAATATGGTGCAC+AGG - tig0024335:50833-50852 None:intergenic 45.0%
!! CCTGTGCACCATATTTTAGG+TGG + tig0024335:50830-50849 Msa1416280:CDS 45.0%
!! GTGCACCATATTTTAGGTGG+TGG + tig0024335:50833-50852 Msa1416280:CDS 45.0%
TAGCTGCTGATGTCATGTTG+TGG + tig0024335:50955-50974 Msa1416280:intron 45.0%
TGCTGATGTCATGTTGTGGA+GGG + tig0024335:50959-50978 Msa1416280:CDS 45.0%
GAGCCATATAGTTGTTGCAG+CGG - tig0024335:51012-51031 None:intergenic 45.0%
GAGCTAGGCATAGAAGTGAT+AGG - tig0024335:51061-51080 None:intergenic 45.0%
GAATAACCTGCTAAACACGC+CGG - tig0024335:51126-51145 None:intergenic 45.0%
TTTCTTTCCGTAGTGACAGG+AGG + tig0024335:51236-51255 Msa1416280:intron 45.0%
! ACCAAACGAGGAGCTTTTGA+TGG - tig0024335:51262-51281 None:intergenic 45.0%
CTGAGGTTAACCGTGGTTTA+AGG + tig0024335:51326-51345 Msa1416280:CDS 45.0%
CAAGAGGGTCCTATATTTGG+GGG - tig0024335:51478-51497 None:intergenic 45.0%
GTTGTAGTATGCTTATGGGC+TGG + tig0024335:51789-51808 Msa1416280:CDS 45.0%
CACCGAGATAACAGCAAACT+CGG - tig0024335:52125-52144 None:intergenic 45.0%
!! TTTGCTGTTATCTCGGTGTG+TGG + tig0024335:52127-52146 Msa1416280:intron 45.0%
CATACCTTTCGTAGAGAACC+GGG - tig0024335:52314-52333 None:intergenic 45.0%
GCAAAACCAGTATAGGAAGG+TGG + tig0024335:52377-52396 Msa1416280:CDS 45.0%
CAGAATCCACCTTCCTATAC+TGG - tig0024335:52386-52405 None:intergenic 45.0%
! CAGTATAGGAAGGTGGATTC+TGG + tig0024335:52384-52403 Msa1416280:CDS 45.0%
ATCCCCAAAGGAAAGAAGCT+TGG + tig0024335:52420-52439 Msa1416280:CDS 45.0%
CAAACCAGAATGCGAGCAGA+GGG - tig0024335:49024-49043 None:intergenic 50.0%
TCAAACCAGAATGCGAGCAG+AGG - tig0024335:49025-49044 None:intergenic 50.0%
CCATGGAAAGACACTTTGGC+AGG - tig0024335:49574-49593 None:intergenic 50.0%
! CCTGCCAAAGTGTCTTTCCA+TGG + tig0024335:49571-49590 Msa1416280:intron 50.0%
!! AAGGAGCGTCTCTGCTTCAT+AGG - tig0024335:49648-49667 None:intergenic 50.0%
TATGAAGCAGAGACGCTCCT+TGG + tig0024335:49647-49666 Msa1416280:intron 50.0%
! TGTCAGTGTCGTGTTGGTGT+CGG - tig0024335:49709-49728 None:intergenic 50.0%
ATCAGGTGTCAGTGTCGTGT+TGG - tig0024335:49715-49734 None:intergenic 50.0%
GTTTCTGTGTGTGTCGTGTC+TGG + tig0024335:49780-49799 Msa1416280:intron 50.0%
CAAGACAGCATTCCCACTCA+AGG - tig0024335:50010-50029 None:intergenic 50.0%
TCCAGTCAAGTGCAGGAATC+TGG + tig0024335:50148-50167 Msa1416280:intron 50.0%
CCAGTCAAGTGCAGGAATCT+GGG + tig0024335:50149-50168 Msa1416280:intron 50.0%
TCGACACAATCACACACCAC+AGG - tig0024335:50216-50235 None:intergenic 50.0%
! TGCAACGGTGTTAGGCATGA+TGG + tig0024335:50607-50626 Msa1416280:intron 50.0%
CTGCTGATGTCATGTTGTGG+AGG + tig0024335:50958-50977 Msa1416280:CDS 50.0%
! TTGATGGCCTCCTGTCACTA+CGG - tig0024335:51246-51265 None:intergenic 50.0%
GCCATCAAAAGCTCCTCGTT+TGG + tig0024335:51258-51277 Msa1416280:CDS 50.0%
TCTTTCGGGAGAACCAAACG+AGG - tig0024335:51274-51293 None:intergenic 50.0%
! GTTGGTACTGAGGTTAACCG+TGG + tig0024335:51319-51338 Msa1416280:CDS 50.0%
!! TTATGGGCTGGTGCTGTGAT+TGG + tig0024335:51801-51820 Msa1416280:CDS 50.0%
!! TATGGGCTGGTGCTGTGATT+GGG + tig0024335:51802-51821 Msa1416280:CDS 50.0%
TGTTGCTGCACATACACTCC+CGG + tig0024335:52293-52312 Msa1416280:CDS 50.0%
ACTTCCCTCTGCTCGCATTC+TGG + tig0024335:49017-49036 Msa1416280:five_prime_UTR 55.0%
GCAGAGACGCTCCTTGGATT+AGG + tig0024335:49653-49672 Msa1416280:intron 55.0%
CAATTGCGGCCGCAACATCA+AGG - tig0024335:49964-49983 None:intergenic 55.0%
TGATGTTGCGGCCGCAATTG+CGG + tig0024335:49964-49983 Msa1416280:intron 55.0%
TGCACAGTCCAGTCAAGTGC+AGG + tig0024335:50141-50160 Msa1416280:intron 55.0%
CCCAGATTCCTGCACTTGAC+TGG - tig0024335:50152-50171 None:intergenic 55.0%
CACAATCACACACCACAGGC+TGG - tig0024335:50212-50231 None:intergenic 55.0%
CTCGCCAAGTGTTTCCACGA+AGG - tig0024335:50726-50745 None:intergenic 55.0%
TCGTGGAAACACTTGGCGAG+AGG + tig0024335:50726-50745 Msa1416280:CDS 55.0%
CTTGGCGAGAGGCAAAAGTC+TGG + tig0024335:50737-50756 Msa1416280:CDS 55.0%
ATGCTTCCGGCGTGTTTAGC+AGG + tig0024335:51117-51136 Msa1416280:CDS 55.0%
! TGCAACTGCGGTTGGTACTG+AGG + tig0024335:51309-51328 Msa1416280:CDS 55.0%
CTACCTCCGCCCCCAAATAT+AGG + tig0024335:51466-51485 Msa1416280:intron 55.0%
GAGGGTCCTATATTTGGGGG+CGG - tig0024335:51475-51494 None:intergenic 55.0%
!! CTGGTGCTGTGATTGGGAAC+TGG + tig0024335:51808-51827 Msa1416280:CDS 55.0%
CACTCCCGGTTCTCTACGAA+AGG + tig0024335:52307-52326 Msa1416280:CDS 55.0%
GGTCCTATATTTGGGGGCGG+AGG - tig0024335:51472-51491 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024335 gene 48935 52578 48935 ID=Msa1416280;Name=Msa1416280
tig0024335 mRNA 48935 52578 48935 ID=Msa1416280-mRNA-1;Parent=Msa1416280;Name=Msa1416280-mRNA-1;_AED=0.17;_eAED=0.17;_QI=118|1|1|1|0.8|0.66|6|132|243
tig0024335 exon 48935 49038 48935 ID=Msa1416280-mRNA-1:exon:22833;Parent=Msa1416280-mRNA-1
tig0024335 exon 50672 50860 50672 ID=Msa1416280-mRNA-1:exon:22834;Parent=Msa1416280-mRNA-1
tig0024335 exon 50958 51138 50958 ID=Msa1416280-mRNA-1:exon:22835;Parent=Msa1416280-mRNA-1
tig0024335 exon 51249 51396 51249 ID=Msa1416280-mRNA-1:exon:22836;Parent=Msa1416280-mRNA-1
tig0024335 exon 51789 51858 51789 ID=Msa1416280-mRNA-1:exon:22837;Parent=Msa1416280-mRNA-1
tig0024335 exon 52289 52578 52289 ID=Msa1416280-mRNA-1:exon:22838;Parent=Msa1416280-mRNA-1
tig0024335 five_prime_UTR 48935 49038 48935 ID=Msa1416280-mRNA-1:five_prime_utr;Parent=Msa1416280-mRNA-1
tig0024335 five_prime_UTR 50672 50685 50672 ID=Msa1416280-mRNA-1:five_prime_utr;Parent=Msa1416280-mRNA-1
tig0024335 CDS 50686 50860 50686 ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1
tig0024335 CDS 50958 51138 50958 ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1
tig0024335 CDS 51249 51396 51249 ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1
tig0024335 CDS 51789 51858 51789 ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1
tig0024335 CDS 52289 52446 52289 ID=Msa1416280-mRNA-1:cds;Parent=Msa1416280-mRNA-1
tig0024335 three_prime_UTR 52447 52578 52447 ID=Msa1416280-mRNA-1:three_prime_utr;Parent=Msa1416280-mRNA-1
Gene Sequence

>Msa1416280

ATGTCTGAGAATTTTACCGCTGAAAAGCTTCTGAACACCTTCGTGGAAACACTTGGCGAGAGGCAAAAGTCTGGTTCATTCCATGTAGAAGTGAAGGCAAACTCAATGACCTCCCAGTTCAATAAACTGTTTGGACGCGAGAAACCTGTGCACCATATTTTAGGTGGTGGAAAATCTGCTGATGTCATGTTGTGGAGGGACAAGAAGATCTCTGCAGCCGTTTTAACCGCTGCAACAACTATATGGCTCCTTTTTGAATGGCTTAATTATAATTTCCTATCACTTCTATGCCTAGCTCTTGTTCTTGTCATGTCTGTACAGTTTCTTTGGACAAATGCTTCCGGCGTGTTTAGCAGTGACAGGAGGCCATCAAAAGCTCCTCGTTTGGTTCTCCCGAAAGATTTCTTTGTTAATATTGCAACTGCGGTTGGTACTGAGGTTAACCGTGGTTTAAGGTTTCTTCAAAATGTTTCATGTGGAGGAAACTTGAAGCAATTTGTTATTGTTGTAGTATGCTTATGGGCTGGTGCTGTGATTGGGAACTGGTTCAATTTTTTTACTGTCGTGTATATCGGTTTTGTTGCTGCACATACACTCCCGGTTCTCTACGAAAGGTATGATGATCAGATTGATAACTTCGTGTACAAGGTACTTGATCAGATGCAAAACCAGTATAGGAAGGTGGATTCTGGTTTGCTTAGCAAAATCCCCAAAGGAAAGAAGCTTGGATAG

Protein sequence

>Msa1416280

MSENFTAEKLLNTFVETLGERQKSGSFHVEVKANSMTSQFNKLFGREKPVHHILGGGKSADVMLWRDKKISAAVLTAATTIWLLFEWLNYNFLSLLCLALVLVMSVQFLWTNASGVFSSDRRPSKAPRLVLPKDFFVNIATAVGTEVNRGLRFLQNVSCGGNLKQFVIVVVCLWAGAVIGNWFNFFTVVYIGFVAAHTLPVLYERYDDQIDNFVYKVLDQMQNQYRKVDSGLLSKIPKGKKLG*