Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422290 | sp|Q9SS37|RTNLH_ARATH | 56.710 | 231 | 96 | 3 | 46 | 276 | 14 | 240 | 1.52e-95 | 284 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422290 | G7KD07 | 92.086 | 278 | 19 | 2 | 1 | 278 | 15 | 289 | 4.62e-175 | 494 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1386160 | Msa1422290 | 0.810482 | 1.127734e-50 | -8.615850e-47 |
Msa1416280 | Msa1422290 | 0.858194 | 9.738747e-63 | -8.615850e-47 |
Msa0143180 | Msa1422290 | 0.804353 | 2.249614e-49 | -8.615850e-47 |
Msa1164660 | Msa1422290 | 0.802068 | 6.686920e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422290 | MtrunA17_Chr5g0442361 | 97.107 | 242 | 6 | 1 | 37 | 278 | 1 | 241 | 4.48e-175 | 482 |
Msa1422290 | MtrunA17_Chr3g0095441 | 65.217 | 230 | 78 | 1 | 37 | 266 | 1 | 228 | 5.12e-111 | 320 |
Msa1422290 | MtrunA17_Chr8g0387631 | 47.418 | 213 | 107 | 2 | 66 | 275 | 42 | 252 | 2.41e-68 | 213 |
Msa1422290 | MtrunA17_Chr8g0348131 | 44.286 | 210 | 111 | 2 | 70 | 275 | 53 | 260 | 1.43e-61 | 195 |
Msa1422290 | MtrunA17_Chr1g0202401 | 40.306 | 196 | 115 | 2 | 78 | 273 | 50 | 243 | 1.02e-53 | 174 |
Msa1422290 | MtrunA17_Chr8g0376101 | 40.500 | 200 | 111 | 2 | 79 | 275 | 21 | 215 | 6.92e-52 | 169 |
Msa1422290 | MtrunA17_Chr1g0209261 | 36.181 | 199 | 115 | 4 | 79 | 275 | 10 | 198 | 1.19e-39 | 137 |
Msa1422290 | MtrunA17_Chr3g0108661 | 32.979 | 188 | 124 | 1 | 77 | 264 | 45 | 230 | 1.30e-33 | 122 |
Msa1422290 | MtrunA17_Chr4g0005701 | 33.163 | 196 | 129 | 1 | 77 | 272 | 5 | 198 | 4.32e-29 | 109 |
Msa1422290 | MtrunA17_Chr6g0453331 | 31.111 | 180 | 122 | 1 | 96 | 275 | 14 | 191 | 1.73e-26 | 102 |
Msa1422290 | MtrunA17_Chr5g0402811 | 30.939 | 181 | 123 | 1 | 91 | 271 | 29 | 207 | 1.69e-23 | 95.5 |
Msa1422290 | MtrunA17_Chr1g0208091 | 33.511 | 188 | 123 | 1 | 86 | 273 | 9 | 194 | 4.10e-23 | 94.0 |
Msa1422290 | MtrunA17_Chr5g0402701 | 33.333 | 144 | 94 | 1 | 98 | 241 | 344 | 485 | 3.89e-15 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422290 | AT3G10260.1 | 56.710 | 231 | 96 | 3 | 46 | 276 | 14 | 240 | 1.55e-96 | 284 |
Msa1422290 | AT3G10260.2 | 56.710 | 231 | 96 | 3 | 46 | 276 | 14 | 240 | 1.55e-96 | 284 |
Msa1422290 | AT3G10260.3 | 56.710 | 231 | 96 | 3 | 46 | 276 | 34 | 260 | 2.93e-96 | 284 |
Msa1422290 | AT2G46170.1 | 45.098 | 204 | 110 | 1 | 70 | 273 | 43 | 244 | 2.42e-65 | 205 |
Msa1422290 | AT3G61560.1 | 44.118 | 204 | 112 | 1 | 70 | 273 | 43 | 244 | 1.18e-63 | 201 |
Msa1422290 | AT3G61560.2 | 44.118 | 204 | 112 | 1 | 70 | 273 | 43 | 244 | 1.18e-63 | 201 |
Msa1422290 | AT1G64090.1 | 41.148 | 209 | 117 | 2 | 71 | 275 | 40 | 246 | 4.14e-58 | 186 |
Msa1422290 | AT4G23630.1 | 39.899 | 198 | 117 | 1 | 78 | 275 | 72 | 267 | 1.67e-57 | 186 |
Msa1422290 | AT4G23630.2 | 39.899 | 198 | 117 | 1 | 78 | 275 | 72 | 267 | 1.67e-57 | 186 |
Msa1422290 | AT4G11220.1 | 37.374 | 198 | 122 | 1 | 78 | 275 | 68 | 263 | 9.04e-57 | 183 |
Msa1422290 | AT5G41600.1 | 41.089 | 202 | 113 | 3 | 78 | 275 | 51 | 250 | 4.66e-55 | 179 |
Msa1422290 | AT1G64090.2 | 38.222 | 225 | 117 | 3 | 71 | 275 | 40 | 262 | 3.79e-54 | 177 |
Msa1422290 | AT3G18260.1 | 38.191 | 199 | 121 | 1 | 77 | 275 | 21 | 217 | 2.60e-49 | 163 |
Msa1422290 | AT4G01230.2 | 38.916 | 203 | 119 | 1 | 71 | 273 | 46 | 243 | 2.83e-49 | 163 |
Msa1422290 | AT3G61560.3 | 45.570 | 158 | 84 | 1 | 70 | 227 | 43 | 198 | 4.73e-47 | 156 |
Msa1422290 | AT4G01230.1 | 37.931 | 203 | 119 | 2 | 71 | 273 | 46 | 241 | 7.64e-46 | 154 |
Msa1422290 | AT2G46170.2 | 41.912 | 136 | 77 | 1 | 70 | 205 | 43 | 176 | 1.86e-35 | 126 |
Msa1422290 | AT3G10915.7 | 29.808 | 208 | 144 | 1 | 65 | 272 | 36 | 241 | 4.77e-34 | 124 |
Msa1422290 | AT3G10915.2 | 30.612 | 196 | 134 | 1 | 78 | 273 | 24 | 217 | 6.57e-34 | 123 |
Msa1422290 | AT3G10915.4 | 30.457 | 197 | 134 | 2 | 78 | 273 | 24 | 218 | 3.79e-32 | 119 |
Msa1422290 | AT2G15280.1 | 33.158 | 190 | 125 | 1 | 83 | 272 | 2 | 189 | 4.09e-32 | 117 |
Msa1422290 | AT1G68230.2 | 33.161 | 193 | 121 | 3 | 86 | 276 | 22 | 208 | 1.46e-27 | 106 |
Msa1422290 | AT3G10915.5 | 27.523 | 218 | 133 | 3 | 78 | 272 | 24 | 239 | 7.63e-27 | 105 |
Msa1422290 | AT3G19460.1 | 31.073 | 177 | 120 | 1 | 87 | 263 | 14 | 188 | 2.94e-26 | 102 |
Msa1422290 | AT3G19460.5 | 31.073 | 177 | 120 | 1 | 87 | 263 | 14 | 188 | 2.94e-26 | 102 |
Msa1422290 | AT3G19460.4 | 31.073 | 177 | 120 | 1 | 87 | 263 | 14 | 188 | 2.94e-26 | 102 |
Msa1422290 | AT3G10915.6 | 28.415 | 183 | 129 | 1 | 90 | 272 | 4 | 184 | 4.07e-26 | 102 |
Msa1422290 | AT3G10915.3 | 28.652 | 178 | 125 | 1 | 95 | 272 | 8 | 183 | 6.64e-26 | 101 |
Msa1422290 | AT3G54120.1 | 28.708 | 209 | 142 | 3 | 72 | 279 | 1 | 203 | 1.91e-21 | 89.7 |
Msa1422290 | AT3G19460.3 | 27.103 | 214 | 114 | 5 | 87 | 263 | 14 | 222 | 6.00e-20 | 86.7 |
Msa1422290 | AT3G19460.7 | 27.103 | 214 | 114 | 5 | 87 | 263 | 14 | 222 | 6.00e-20 | 86.7 |
Msa1422290 | AT1G68230.1 | 33.793 | 145 | 88 | 3 | 86 | 228 | 22 | 160 | 1.14e-16 | 75.9 |
Msa1422290 | AT3G10915.1 | 31.200 | 125 | 84 | 1 | 78 | 202 | 24 | 146 | 1.74e-16 | 75.5 |
Msa1422290 | AT2G23640.1 | 24.713 | 174 | 129 | 1 | 97 | 270 | 18 | 189 | 1.54e-14 | 71.2 |
Msa1422290 | AT2G15280.2 | 23.684 | 190 | 104 | 2 | 83 | 272 | 2 | 150 | 2.32e-11 | 61.2 |
Find 67 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTCACTTGTGATGAAAT+TGG | 0.144159 | tig0025360:+12986 | Msa1422290:three_prime_UTR |
TAGATTCATGTTTATGTAAA+TGG | 0.146269 | tig0025360:+12945 | Msa1422290:exon |
ACTTCCCTCTGCTCTCATTC+TGG | 0.230194 | tig0025360:+9554 | Msa1422290:CDS |
TGCAGGTTGTAGTATGCTTA+TGG | 0.271495 | tig0025360:+12285 | Msa1422290:intron |
TCATGTCTGTACAGTTTCTT+TGG | 0.274156 | tig0025360:+11622 | Msa1422290:CDS |
CTGAGGTTAACCGTGGTTTA+AGG | 0.278401 | tig0025360:+11858 | Msa1422290:CDS |
TATCCAAGCTTCTTTCCTTT+GGG | 0.285834 | tig0025360:-12924 | None:intergenic |
TATAATTAAGCCATTCAAAA+AGG | 0.291332 | tig0025360:-11563 | None:intergenic |
CAGTATAGGAAGGTGGATTC+TGG | 0.314712 | tig0025360:+12885 | Msa1422290:CDS |
CTATCCAAGCTTCTTTCCTT+TGG | 0.317711 | tig0025360:-12925 | None:intergenic |
TATTAACAAAGAAATCTTTC+GGG | 0.323201 | tig0025360:-11817 | None:intergenic |
CAGAATCCACCTTCCTATAC+TGG | 0.327594 | tig0025360:-12884 | None:intergenic |
GTCCAAACAGTTTATTGAAC+TGG | 0.330990 | tig0025360:-11331 | None:intergenic |
TAACCGCTGCAACAACTATA+TGG | 0.340621 | tig0025360:+11538 | Msa1422290:CDS |
TTCTCACTTGTGATGAAATT+GGG | 0.354995 | tig0025360:+12987 | Msa1422290:three_prime_UTR |
ATATTAACAAAGAAATCTTT+CGG | 0.374090 | tig0025360:-11818 | None:intergenic |
CTGGTGCTGTGATTGGGAAC+TGG | 0.386885 | tig0025360:+12309 | Msa1422290:CDS |
ATGCTTCCGGCGTGTTTAGC+AGG | 0.400253 | tig0025360:+11649 | Msa1422290:CDS |
TCCCAGTTCAATAAACTGTT+TGG | 0.402640 | tig0025360:+11329 | Msa1422290:CDS |
TTATGGGCTGGTGCTGTGAT+TGG | 0.407728 | tig0025360:+12302 | Msa1422290:CDS |
TTTCTTTGGACAAATGCTTC+CGG | 0.425537 | tig0025360:+11636 | Msa1422290:CDS |
GCCATCAAAAGCTCCTCGTT+TGG | 0.430625 | tig0025360:+11790 | Msa1422290:CDS |
GCAGGTTGTAGTATGCTTAT+GGG | 0.447620 | tig0025360:+12286 | Msa1422290:intron |
TCATACCTTTCGTAGAGAAC+CGG | 0.450625 | tig0025360:-12813 | None:intergenic |
TATGGGCTGGTGCTGTGATT+GGG | 0.451379 | tig0025360:+12303 | Msa1422290:CDS |
ATCCAAGCTTCTTTCCTTTG+GGG | 0.455010 | tig0025360:-12923 | None:intergenic |
GAGCTAGGCATAGAAGTGAT+AGG | 0.455942 | tig0025360:-11590 | None:intergenic |
GCAATGAAGTGAAAAGTTAA+CGG | 0.456612 | tig0025360:-9519 | None:intergenic |
CTTCAAAATGTTTCATGTGG+AGG | 0.472512 | tig0025360:+11884 | Msa1422290:CDS |
AAAGCTTCTGAACACCTTCG+TGG | 0.484982 | tig0025360:+11241 | Msa1422290:CDS |
AGTTGTTGCAGCGGTTAAAA+CGG | 0.489432 | tig0025360:-11532 | None:intergenic |
ATCCCCAAAGGAAAGAAGCT+TGG | 0.496516 | tig0025360:+12921 | Msa1422290:CDS |
ATCAGATGCAAAACCAGTAT+AGG | 0.499744 | tig0025360:+12871 | Msa1422290:CDS |
CTTGGCGAGAGGCAAAAGTC+TGG | 0.502330 | tig0025360:+11269 | Msa1422290:CDS |
TTTGAAGAAACCTTAAACCA+CGG | 0.502721 | tig0025360:-11868 | None:intergenic |
AGTTTGCCTTCACTTCTACA+TGG | 0.505250 | tig0025360:-11298 | None:intergenic |
TGTTGCTGCACATACACTCC+CGG | 0.528499 | tig0025360:+12794 | Msa1422290:CDS |
TCCAAACAGTTTATTGAACT+GGG | 0.530900 | tig0025360:-11330 | None:intergenic |
GTTAATATTGCAACTGCGGT+TGG | 0.530904 | tig0025360:+11833 | Msa1422290:CDS |
GATTGATAACTTCGTGTACA+AGG | 0.536766 | tig0025360:+12842 | Msa1422290:CDS |
AACACCTTCGTGGAAACACT+TGG | 0.537056 | tig0025360:+11251 | Msa1422290:CDS |
TTTCTTCAAAATGTTTCATG+TGG | 0.542392 | tig0025360:+11881 | Msa1422290:CDS |
TCAAACCAGAATGAGAGCAG+AGG | 0.557384 | tig0025360:-9559 | None:intergenic |
CCACCTAAAATATGGTGCAC+AGG | 0.562386 | tig0025360:-11362 | None:intergenic |
GTTGTAGTATGCTTATGGGC+TGG | 0.564353 | tig0025360:+12290 | Msa1422290:CDS |
CATACCTTTCGTAGAGAACC+GGG | 0.571222 | tig0025360:-12812 | None:intergenic |
TAGCTGCTGATGTCATGTTG+TGG | 0.573484 | tig0025360:+11487 | Msa1422290:intron |
TGCAACTGCGGTTGGTACTG+AGG | 0.575677 | tig0025360:+11841 | Msa1422290:CDS |
CTTTGTTAATATTGCAACTG+CGG | 0.576367 | tig0025360:+11829 | Msa1422290:CDS |
TTCATTCCATGTAGAAGTGA+AGG | 0.576828 | tig0025360:+11292 | Msa1422290:CDS |
CACTCCCGGTTCTCTACGAA+AGG | 0.578629 | tig0025360:+12808 | Msa1422290:CDS |
CTGCTGATGTCATGTTGTGG+AGG | 0.578920 | tig0025360:+11490 | Msa1422290:CDS |
CAAACCAGAATGAGAGCAGA+GGG | 0.581385 | tig0025360:-9558 | None:intergenic |
TTTCTTTCCGTAGTGACAGG+AGG | 0.604290 | tig0025360:+11768 | Msa1422290:intron |
TGCTGATGTCATGTTGTGGA+GGG | 0.606274 | tig0025360:+11491 | Msa1422290:CDS |
ACATGACAAGAACAAGAGCT+AGG | 0.612406 | tig0025360:-11605 | None:intergenic |
CTCGCCAAGTGTTTCCACGA+AGG | 0.615062 | tig0025360:-11255 | None:intergenic |
GATGCAAAACCAGTATAGGA+AGG | 0.625408 | tig0025360:+12875 | Msa1422290:CDS |
GCAAAACCAGTATAGGAAGG+TGG | 0.628367 | tig0025360:+12878 | Msa1422290:CDS |
GAGCCATATAGTTGTTGCAG+CGG | 0.636566 | tig0025360:-11541 | None:intergenic |
TCGTGGAAACACTTGGCGAG+AGG | 0.645330 | tig0025360:+11258 | Msa1422290:CDS |
TTGCTTAGCAAAATCCCCAA+AGG | 0.645417 | tig0025360:+12909 | Msa1422290:CDS |
GTTGGTACTGAGGTTAACCG+TGG | 0.658377 | tig0025360:+11851 | Msa1422290:CDS |
GAATAACCTGCTAAACACGC+CGG | 0.683282 | tig0025360:-11655 | None:intergenic |
AGATAATTCAGAAAAGTGTG+TGG | 0.684590 | tig0025360:-9485 | None:intergenic |
AAACAGTTTATTGAACTGGG+AGG | 0.721336 | tig0025360:-11327 | None:intergenic |
TCTTTCGGGAGAACCAAACG+AGG | 0.723179 | tig0025360:-11803 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATATATTTTATAAAAAAAT+TGG | - | tig0025360:9923-9942 | None:intergenic | 0.0% |
!! | CATTTAGATAAAAATAAAAT+AGG | - | tig0025360:11713-11732 | None:intergenic | 10.0% |
!!! | TTTATTTTTATCTAAATGTA+TGG | + | tig0025360:11715-11734 | Msa1422290:intron | 10.0% |
!! | ATATTAACAAAGAAATCTTT+CGG | - | tig0025360:11821-11840 | None:intergenic | 15.0% |
!! | ACACATGAATTAAAAAAAAT+TGG | - | tig0025360:12167-12186 | None:intergenic | 15.0% |
!!! | TTTTTTAATTCATGTGTTTT+AGG | + | tig0025360:12170-12189 | Msa1422290:intron | 15.0% |
!!! | TATGATTTTATATTTAGAGA+CGG | + | tig0025360:12196-12215 | Msa1422290:intron | 15.0% |
!! | AATAATTAGAGAAAATATCA+TGG | - | tig0025360:12404-12423 | None:intergenic | 15.0% |
!!! | ATTTTCTCTAATTATTAAGT+TGG | + | tig0025360:12408-12427 | Msa1422290:intron | 15.0% |
!!! | TATTTAGGGATAATATTTTT+AGG | - | tig0025360:12470-12489 | None:intergenic | 15.0% |
!!! | AATAATTTCTTTTTCTATGT+TGG | + | tig0025360:13047-13066 | Msa1422290:three_prime_UTR | 15.0% |
!! | ATGAAAGAGATGAAAAAAAT+GGG | - | tig0025360:9593-9612 | None:intergenic | 20.0% |
!! | AATGAAAGAGATGAAAAAAA+TGG | - | tig0025360:9594-9613 | None:intergenic | 20.0% |
!! | TTGAAAAGGATAAAAGAAAA+TGG | - | tig0025360:9617-9636 | None:intergenic | 20.0% |
!! | AAAACATGAATAGATTGAAA+AGG | - | tig0025360:9631-9650 | None:intergenic | 20.0% |
!! | TCAAAAAGTGATAATAATTG+AGG | - | tig0025360:9680-9699 | None:intergenic | 20.0% |
!! | ATATAAATGATATAACGACA+TGG | - | tig0025360:9806-9825 | None:intergenic | 20.0% |
!! | AAAGTCTAGAAATAAATGTA+AGG | + | tig0025360:10062-10081 | Msa1422290:intron | 20.0% |
!!! | CATTTTCGCTAAAAATAAAA+TGG | - | tig0025360:10139-10158 | None:intergenic | 20.0% |
!! | ATCTGAATTACATTACATAA+TGG | - | tig0025360:11051-11070 | None:intergenic | 20.0% |
!! | AATCATGGAAAAAATCATAA+TGG | - | tig0025360:11106-11125 | None:intergenic | 20.0% |
!! | TATAATTAAGCCATTCAAAA+AGG | - | tig0025360:11566-11585 | None:intergenic | 20.0% |
!! | TATTAACAAAGAAATCTTTC+GGG | - | tig0025360:11820-11839 | None:intergenic | 20.0% |
!! | GATTATAAATGACAAAACAA+AGG | - | tig0025360:11957-11976 | None:intergenic | 20.0% |
!!! | GTATGTTTTAAGCATAAATA+TGG | - | tig0025360:11979-11998 | None:intergenic | 20.0% |
!!! | TTTCATTGTCCTTTTTTAAA+AGG | + | tig0025360:12035-12054 | Msa1422290:intron | 20.0% |
!! | ATGTAGTTGAAAATTTGAAA+GGG | - | tig0025360:12062-12081 | None:intergenic | 20.0% |
!! | AATGTAGTTGAAAATTTGAA+AGG | - | tig0025360:12063-12082 | None:intergenic | 20.0% |
!! | CAACATAATTAGAGATATAA+TGG | - | tig0025360:12099-12118 | None:intergenic | 20.0% |
!! | TTCAACTATTCACTTATTTA+GGG | - | tig0025360:12484-12503 | None:intergenic | 20.0% |
!! | TTTCAACTATTCACTTATTT+AGG | - | tig0025360:12485-12504 | None:intergenic | 20.0% |
!!! | GTTAAAACTTTGTTATGTTA+CGG | + | tig0025360:12712-12731 | Msa1422290:intron | 20.0% |
!! | TAGATTCATGTTTATGTAAA+TGG | + | tig0025360:12945-12964 | Msa1422290:exon | 20.0% |
!! | GAGATAAAAAGAGAATTTTG+TGG | + | tig0025360:9868-9887 | Msa1422290:intron | 25.0% |
! | TAGAAATAAATGTAAGGACA+TGG | + | tig0025360:10068-10087 | Msa1422290:intron | 25.0% |
! | AGAAATAAATGTAAGGACAT+GGG | + | tig0025360:10069-10088 | Msa1422290:intron | 25.0% |
! | TGACATAATTCAATGTAATC+AGG | - | tig0025360:10261-10280 | None:intergenic | 25.0% |
!!! | TTGTTTTTAAAAACCTTGAG+TGG | + | tig0025360:10521-10540 | Msa1422290:intron | 25.0% |
!!! | TGTTTTTAAAAACCTTGAGT+GGG | + | tig0025360:10522-10541 | Msa1422290:intron | 25.0% |
! | ATAAGAGAGAATAAAAGCAA+CGG | - | tig0025360:10708-10727 | None:intergenic | 25.0% |
! | GTATCATCTGAATTACATAA+TGG | - | tig0025360:10994-11013 | None:intergenic | 25.0% |
! | TCCTGTAAAATCTATCATAT+TGG | + | tig0025360:11420-11439 | Msa1422290:intron | 25.0% |
! | TTTCTTCAAAATGTTTCATG+TGG | + | tig0025360:11881-11900 | Msa1422290:CDS | 25.0% |
! | TGTAGTTGAAAATTTGAAAG+GGG | - | tig0025360:12061-12080 | None:intergenic | 25.0% |
! | TTGAAAAACAGAAACATTGA+CGG | + | tig0025360:12237-12256 | Msa1422290:intron | 25.0% |
!!! | TTTTTTACTGTCGTGTATAT+CGG | + | tig0025360:12338-12357 | Msa1422290:CDS | 25.0% |
! | ACACATTGTATCAACAAAAA+AGG | - | tig0025360:12378-12397 | None:intergenic | 25.0% |
!! | TTTTTGTTGATACAATGTGT+TGG | + | tig0025360:12378-12397 | Msa1422290:intron | 25.0% |
! | CTGTTGAAATAGTATTTCAT+CGG | + | tig0025360:12505-12524 | Msa1422290:intron | 25.0% |
!!! | CTTTGTTTTGTTATGTCTTA+AGG | + | tig0025360:12768-12787 | Msa1422290:intron | 25.0% |
! | AGATAATTCAGAAAAGTGTG+TGG | - | tig0025360:9488-9507 | None:intergenic | 30.0% |
GCAATGAAGTGAAAAGTTAA+CGG | - | tig0025360:9522-9541 | None:intergenic | 30.0% | |
TCTGAAAAACTGTTTGAATG+TGG | + | tig0025360:9734-9753 | Msa1422290:intron | 30.0% | |
TCTTATGAATCACAATTCAG+AGG | - | tig0025360:9850-9869 | None:intergenic | 30.0% | |
TTGAAAGCAGAAAAGCAAAA+GGG | - | tig0025360:9897-9916 | None:intergenic | 30.0% | |
TTTGAAAGCAGAAAAGCAAA+AGG | - | tig0025360:9898-9917 | None:intergenic | 30.0% | |
AAAAGCAAAGTTGAAGAACA+AGG | - | tig0025360:9971-9990 | None:intergenic | 30.0% | |
TAGCGAAAATGAAAAGCAAA+TGG | + | tig0025360:10148-10167 | Msa1422290:intron | 30.0% | |
AGCGAAAATGAAAAGCAAAT+GGG | + | tig0025360:10149-10168 | Msa1422290:intron | 30.0% | |
! | CATGATTTTCTGCATTTTCA+AGG | - | tig0025360:10420-10439 | None:intergenic | 30.0% |
CTTGAAAATGCAGAAAATCA+TGG | + | tig0025360:10418-10437 | Msa1422290:intron | 30.0% | |
!! | TTGTGTCGACTTAATCATAA+TGG | + | tig0025360:10754-10773 | Msa1422290:intron | 30.0% |
! | TCAACAATTGAAAGCCTTAT+AGG | + | tig0025360:10936-10955 | Msa1422290:intron | 30.0% |
CAAACATCAATCACTAATCA+TGG | - | tig0025360:11121-11140 | None:intergenic | 30.0% | |
TTAGTGATTGATGTTTGCAA+CGG | + | tig0025360:11124-11143 | Msa1422290:intron | 30.0% | |
TCCAAACAGTTTATTGAACT+GGG | - | tig0025360:11333-11352 | None:intergenic | 30.0% | |
! | ATTTTCCACCACCTAAAATA+TGG | - | tig0025360:11373-11392 | None:intergenic | 30.0% |
! | GCCAATATGATAGATTTTAC+AGG | - | tig0025360:11424-11443 | None:intergenic | 30.0% |
CAAAAGAAGAAATTCAAGGA+TGG | - | tig0025360:11683-11702 | None:intergenic | 30.0% | |
CAGACAAAAGAAGAAATTCA+AGG | - | tig0025360:11687-11706 | None:intergenic | 30.0% | |
CTTTGTTAATATTGCAACTG+CGG | + | tig0025360:11829-11848 | Msa1422290:CDS | 30.0% | |
TTTGAAGAAACCTTAAACCA+CGG | - | tig0025360:11871-11890 | None:intergenic | 30.0% | |
GACAATGAAAAATCTCAAGA+GGG | - | tig0025360:12025-12044 | None:intergenic | 30.0% | |
! | GATTTTATATTTAGAGACGG+AGG | + | tig0025360:12199-12218 | Msa1422290:intron | 30.0% |
CATTGTATCAACAAAAAAGG+AGG | - | tig0025360:12375-12394 | None:intergenic | 30.0% | |
TCAAGAATTCTCTCTTTGTT+TGG | - | tig0025360:12551-12570 | None:intergenic | 30.0% | |
TTTCTCACTTGTGATGAAAT+TGG | + | tig0025360:12986-13005 | Msa1422290:three_prime_UTR | 30.0% | |
TTCTCACTTGTGATGAAATT+GGG | + | tig0025360:12987-13006 | Msa1422290:three_prime_UTR | 30.0% | |
!!! | TGTGTTTGTTGCTTTTACTT+TGG | + | tig0025360:13017-13036 | Msa1422290:three_prime_UTR | 30.0% |
!! | CTTTTCACTTCATTGCTGTT+TGG | + | tig0025360:9526-9545 | Msa1422290:CDS | 35.0% |
TTTGAATGTGGTTGTGAGAA+GGG | + | tig0025360:9746-9765 | Msa1422290:intron | 35.0% | |
! | ATCACAATTCAGAGGCATAA+AGG | - | tig0025360:9842-9861 | None:intergenic | 35.0% |
ATGGAAAGCAAATTCAACCA+TGG | - | tig0025360:10120-10139 | None:intergenic | 35.0% | |
GCTTAAAAACCTTGATGTTG+CGG | + | tig0025360:10479-10498 | Msa1422290:intron | 35.0% | |
!!! | GACCTTTTTGGTTTGTGAAA+CGG | + | tig0025360:10556-10575 | Msa1422290:intron | 35.0% |
TTCATTCCATGTAGAAGTGA+AGG | + | tig0025360:11292-11311 | Msa1422290:CDS | 35.0% | |
AAACAGTTTATTGAACTGGG+AGG | - | tig0025360:11330-11349 | None:intergenic | 35.0% | |
TCCCAGTTCAATAAACTGTT+TGG | + | tig0025360:11329-11348 | Msa1422290:CDS | 35.0% | |
GTCCAAACAGTTTATTGAAC+TGG | - | tig0025360:11334-11353 | None:intergenic | 35.0% | |
! | AAACCTGTGCACCATATTTT+AGG | + | tig0025360:11359-11378 | Msa1422290:CDS | 35.0% |
! | CTATATGGCTCCTTTTTGAA+TGG | + | tig0025360:11553-11572 | Msa1422290:CDS | 35.0% |
TCATGTCTGTACAGTTTCTT+TGG | + | tig0025360:11622-11641 | Msa1422290:CDS | 35.0% | |
TTTCTTTGGACAAATGCTTC+CGG | + | tig0025360:11636-11655 | Msa1422290:CDS | 35.0% | |
CTTCAAAATGTTTCATGTGG+AGG | + | tig0025360:11884-11903 | Msa1422290:CDS | 35.0% | |
GGACAATGAAAAATCTCAAG+AGG | - | tig0025360:12026-12045 | None:intergenic | 35.0% | |
!! | TGAAAGGGGCCTTTTAAAAA+AGG | - | tig0025360:12047-12066 | None:intergenic | 35.0% |
TTTATATTTAGAGACGGAGG+TGG | + | tig0025360:12202-12221 | Msa1422290:intron | 35.0% | |
ATCATGCTTAAAACATCTGC+AGG | + | tig0025360:12268-12287 | Msa1422290:intron | 35.0% | |
AACAGCAAACTCGGTTAATT+GGG | - | tig0025360:12617-12636 | None:intergenic | 35.0% | |
TAACAGCAAACTCGGTTAAT+TGG | - | tig0025360:12618-12637 | None:intergenic | 35.0% | |
TTACCACGAAACACTTAACA+AGG | - | tig0025360:12680-12699 | None:intergenic | 35.0% | |
! | GATTGATAACTTCGTGTACA+AGG | + | tig0025360:12842-12861 | Msa1422290:CDS | 35.0% |
ATCAGATGCAAAACCAGTAT+AGG | + | tig0025360:12871-12890 | Msa1422290:CDS | 35.0% | |
TATCCAAGCTTCTTTCCTTT+GGG | - | tig0025360:12927-12946 | None:intergenic | 35.0% | |
GTTTGAATGTGGTTGTGAGA+AGG | + | tig0025360:9745-9764 | Msa1422290:intron | 40.0% | |
TGTGAGAAGGGAATTGACTA+TGG | + | tig0025360:9758-9777 | Msa1422290:intron | 40.0% | |
TCAACCATGGAAAGACACTT+TGG | - | tig0025360:10107-10126 | None:intergenic | 40.0% | |
TCCTAATGTCTGACATGCAT+CGG | + | tig0025360:10209-10228 | Msa1422290:intron | 40.0% | |
TATACCCGTGCTTCATAGAT+GGG | + | tig0025360:10362-10381 | Msa1422290:intron | 40.0% | |
AAGCTTCTACAACCACATTG+AGG | - | tig0025360:10463-10482 | None:intergenic | 40.0% | |
! | GAATGCTGTCTTGACCTTTT+TGG | + | tig0025360:10544-10563 | Msa1422290:intron | 40.0% |
GTCCGTTTCACAAACCAAAA+AGG | - | tig0025360:10561-10580 | None:intergenic | 40.0% | |
TTATCATAAAGACCAGCCTG+TGG | + | tig0025360:10724-10743 | Msa1422290:intron | 40.0% | |
ACCGAGCTTTGCTAAAAGTT+TGG | + | tig0025360:10777-10796 | Msa1422290:intron | 40.0% | |
! | GCCAAACTTTTAGCAAAGCT+CGG | - | tig0025360:10781-10800 | None:intergenic | 40.0% |
! | CGACTTGTGACTTTTGTGAT+TGG | - | tig0025360:10864-10883 | None:intergenic | 40.0% |
TTGATGTTTGCAACGGTGTT+AGG | + | tig0025360:11131-11150 | Msa1422290:intron | 40.0% | |
AGTTTGCCTTCACTTCTACA+TGG | - | tig0025360:11301-11320 | None:intergenic | 40.0% | |
AGTTGTTGCAGCGGTTAAAA+CGG | - | tig0025360:11535-11554 | None:intergenic | 40.0% | |
TAACCGCTGCAACAACTATA+TGG | + | tig0025360:11538-11557 | Msa1422290:CDS | 40.0% | |
ACATGACAAGAACAAGAGCT+AGG | - | tig0025360:11608-11627 | None:intergenic | 40.0% | |
! | TTGTTTCTTTCCGTAGTGAC+AGG | + | tig0025360:11765-11784 | Msa1422290:intron | 40.0% |
GTTAATATTGCAACTGCGGT+TGG | + | tig0025360:11833-11852 | Msa1422290:CDS | 40.0% | |
TCAAGAGGGTCCTATATTTG+GGG | - | tig0025360:12011-12030 | None:intergenic | 40.0% | |
CTCAAGAGGGTCCTATATTT+GGG | - | tig0025360:12012-12031 | None:intergenic | 40.0% | |
TCTCAAGAGGGTCCTATATT+TGG | - | tig0025360:12013-12032 | None:intergenic | 40.0% | |
TGCAGGTTGTAGTATGCTTA+TGG | + | tig0025360:12285-12304 | Msa1422290:intron | 40.0% | |
GCAGGTTGTAGTATGCTTAT+GGG | + | tig0025360:12286-12305 | Msa1422290:intron | 40.0% | |
!! | AACCGAGTTTGCTGTTATCT+CGG | + | tig0025360:12621-12640 | Msa1422290:intron | 40.0% |
TCACCTTGTTAAGTGTTTCG+TGG | + | tig0025360:12674-12693 | Msa1422290:intron | 40.0% | |
TCATACCTTTCGTAGAGAAC+CGG | - | tig0025360:12816-12835 | None:intergenic | 40.0% | |
GATGCAAAACCAGTATAGGA+AGG | + | tig0025360:12875-12894 | Msa1422290:CDS | 40.0% | |
TTGCTTAGCAAAATCCCCAA+AGG | + | tig0025360:12909-12928 | Msa1422290:CDS | 40.0% | |
ATCCAAGCTTCTTTCCTTTG+GGG | - | tig0025360:12926-12945 | None:intergenic | 40.0% | |
CTATCCAAGCTTCTTTCCTT+TGG | - | tig0025360:12928-12947 | None:intergenic | 40.0% | |
CAAACCAGAATGAGAGCAGA+GGG | - | tig0025360:9561-9580 | None:intergenic | 45.0% | |
TCAAACCAGAATGAGAGCAG+AGG | - | tig0025360:9562-9581 | None:intergenic | 45.0% | |
ATTAGGACACGCCTAATCCA+AGG | - | tig0025360:10196-10215 | None:intergenic | 45.0% | |
ACCGATGCATGTCAGACATT+AGG | - | tig0025360:10213-10232 | None:intergenic | 45.0% | |
! | ATGTTTCTGTGTGTCGTGTC+TGG | + | tig0025360:10307-10326 | Msa1422290:intron | 45.0% |
GTGTCTGTGTCTATACTGTC+TGG | + | tig0025360:10329-10348 | Msa1422290:intron | 45.0% | |
CTATACCCGTGCTTCATAGA+TGG | + | tig0025360:10361-10380 | Msa1422290:intron | 45.0% | |
TGTTCCCATCTATGAAGCAC+GGG | - | tig0025360:10369-10388 | None:intergenic | 45.0% | |
GTGTTCCCATCTATGAAGCA+CGG | - | tig0025360:10370-10389 | None:intergenic | 45.0% | |
GTGCTTCATAGATGGGAACA+CGG | + | tig0025360:10369-10388 | Msa1422290:intron | 45.0% | |
TAGTCAATGCAGCCTCAATG+TGG | + | tig0025360:10448-10467 | Msa1422290:intron | 45.0% | |
ACAATCTGCAACCGCAATTG+CGG | - | tig0025360:10505-10524 | None:intergenic | 45.0% | |
! | AGCCTTATAGGCTCTAGTTG+AGG | + | tig0025360:10948-10967 | Msa1422290:intron | 45.0% |
! | GCCTTATAGGCTCTAGTTGA+GGG | + | tig0025360:10949-10968 | Msa1422290:intron | 45.0% |
ACCCTCAACTAGAGCCTATA+AGG | - | tig0025360:10953-10972 | None:intergenic | 45.0% | |
! | GGTGTTCAGAAGCTTTTCAG+CGG | - | tig0025360:11237-11256 | None:intergenic | 45.0% |
AAAGCTTCTGAACACCTTCG+TGG | + | tig0025360:11241-11260 | Msa1422290:CDS | 45.0% | |
AACACCTTCGTGGAAACACT+TGG | + | tig0025360:11251-11270 | Msa1422290:CDS | 45.0% | |
CCACCTAAAATATGGTGCAC+AGG | - | tig0025360:11365-11384 | None:intergenic | 45.0% | |
!! | CCTGTGCACCATATTTTAGG+TGG | + | tig0025360:11362-11381 | Msa1422290:CDS | 45.0% |
!! | GTGCACCATATTTTAGGTGG+TGG | + | tig0025360:11365-11384 | Msa1422290:CDS | 45.0% |
TAGCTGCTGATGTCATGTTG+TGG | + | tig0025360:11487-11506 | Msa1422290:intron | 45.0% | |
TGCTGATGTCATGTTGTGGA+GGG | + | tig0025360:11491-11510 | Msa1422290:CDS | 45.0% | |
GAGCCATATAGTTGTTGCAG+CGG | - | tig0025360:11544-11563 | None:intergenic | 45.0% | |
GAGCTAGGCATAGAAGTGAT+AGG | - | tig0025360:11593-11612 | None:intergenic | 45.0% | |
GAATAACCTGCTAAACACGC+CGG | - | tig0025360:11658-11677 | None:intergenic | 45.0% | |
TTTCTTTCCGTAGTGACAGG+AGG | + | tig0025360:11768-11787 | Msa1422290:intron | 45.0% | |
! | ACCAAACGAGGAGCTTTTGA+TGG | - | tig0025360:11794-11813 | None:intergenic | 45.0% |
CTGAGGTTAACCGTGGTTTA+AGG | + | tig0025360:11858-11877 | Msa1422290:CDS | 45.0% | |
CAAGAGGGTCCTATATTTGG+GGG | - | tig0025360:12010-12029 | None:intergenic | 45.0% | |
GTTGTAGTATGCTTATGGGC+TGG | + | tig0025360:12290-12309 | Msa1422290:CDS | 45.0% | |
CACCGAGATAACAGCAAACT+CGG | - | tig0025360:12626-12645 | None:intergenic | 45.0% | |
!! | TTTGCTGTTATCTCGGTGTG+TGG | + | tig0025360:12628-12647 | Msa1422290:intron | 45.0% |
CATACCTTTCGTAGAGAACC+GGG | - | tig0025360:12815-12834 | None:intergenic | 45.0% | |
GCAAAACCAGTATAGGAAGG+TGG | + | tig0025360:12878-12897 | Msa1422290:CDS | 45.0% | |
CAGAATCCACCTTCCTATAC+TGG | - | tig0025360:12887-12906 | None:intergenic | 45.0% | |
! | CAGTATAGGAAGGTGGATTC+TGG | + | tig0025360:12885-12904 | Msa1422290:CDS | 45.0% |
ATCCCCAAAGGAAAGAAGCT+TGG | + | tig0025360:12921-12940 | Msa1422290:CDS | 45.0% | |
ACTTCCCTCTGCTCTCATTC+TGG | + | tig0025360:9554-9573 | Msa1422290:CDS | 50.0% | |
CCATGGAAAGACACTTTGGC+AGG | - | tig0025360:10103-10122 | None:intergenic | 50.0% | |
! | CCTGCCAAAGTGTCTTTCCA+TGG | + | tig0025360:10100-10119 | Msa1422290:intron | 50.0% |
!! | AAGGAGCGTCTCAGCTTCAT+AGG | - | tig0025360:10177-10196 | None:intergenic | 50.0% |
TATGAAGCTGAGACGCTCCT+TGG | + | tig0025360:10176-10195 | Msa1422290:intron | 50.0% | |
! | TGTCAGTGTCGTGTTGGTGT+CGG | - | tig0025360:10238-10257 | None:intergenic | 50.0% |
ATCAGGTGTCAGTGTCGTGT+TGG | - | tig0025360:10244-10263 | None:intergenic | 50.0% | |
CAAGACAGCATTCCCACTCA+AGG | - | tig0025360:10537-10556 | None:intergenic | 50.0% | |
TCCAGTCAAGTGCAGGAATC+TGG | + | tig0025360:10675-10694 | Msa1422290:intron | 50.0% | |
CCAGTCAAGTGCAGGAATCT+GGG | + | tig0025360:10676-10695 | Msa1422290:intron | 50.0% | |
TCGACACAATCACACACCAC+AGG | - | tig0025360:10743-10762 | None:intergenic | 50.0% | |
CTGCTGATGTCATGTTGTGG+AGG | + | tig0025360:11490-11509 | Msa1422290:CDS | 50.0% | |
! | TTGATGGCCTCCTGTCACTA+CGG | - | tig0025360:11778-11797 | None:intergenic | 50.0% |
GCCATCAAAAGCTCCTCGTT+TGG | + | tig0025360:11790-11809 | Msa1422290:CDS | 50.0% | |
TCTTTCGGGAGAACCAAACG+AGG | - | tig0025360:11806-11825 | None:intergenic | 50.0% | |
! | GTTGGTACTGAGGTTAACCG+TGG | + | tig0025360:11851-11870 | Msa1422290:CDS | 50.0% |
!! | TTATGGGCTGGTGCTGTGAT+TGG | + | tig0025360:12302-12321 | Msa1422290:CDS | 50.0% |
!! | TATGGGCTGGTGCTGTGATT+GGG | + | tig0025360:12303-12322 | Msa1422290:CDS | 50.0% |
TGTTGCTGCACATACACTCC+CGG | + | tig0025360:12794-12813 | Msa1422290:CDS | 50.0% | |
GCTGAGACGCTCCTTGGATT+AGG | + | tig0025360:10182-10201 | Msa1422290:intron | 55.0% | |
CAATTGCGGCCGCAACATCA+AGG | - | tig0025360:10491-10510 | None:intergenic | 55.0% | |
TGATGTTGCGGCCGCAATTG+CGG | + | tig0025360:10491-10510 | Msa1422290:intron | 55.0% | |
TGCACAGTCCAGTCAAGTGC+AGG | + | tig0025360:10668-10687 | Msa1422290:intron | 55.0% | |
CCCAGATTCCTGCACTTGAC+TGG | - | tig0025360:10679-10698 | None:intergenic | 55.0% | |
CACAATCACACACCACAGGC+TGG | - | tig0025360:10739-10758 | None:intergenic | 55.0% | |
CTCGCCAAGTGTTTCCACGA+AGG | - | tig0025360:11258-11277 | None:intergenic | 55.0% | |
TCGTGGAAACACTTGGCGAG+AGG | + | tig0025360:11258-11277 | Msa1422290:CDS | 55.0% | |
CTTGGCGAGAGGCAAAAGTC+TGG | + | tig0025360:11269-11288 | Msa1422290:CDS | 55.0% | |
ATGCTTCCGGCGTGTTTAGC+AGG | + | tig0025360:11649-11668 | Msa1422290:CDS | 55.0% | |
! | TGCAACTGCGGTTGGTACTG+AGG | + | tig0025360:11841-11860 | Msa1422290:CDS | 55.0% |
CTACCTCCGCCCCCAAATAT+AGG | + | tig0025360:11998-12017 | Msa1422290:intron | 55.0% | |
GAGGGTCCTATATTTGGGGG+CGG | - | tig0025360:12007-12026 | None:intergenic | 55.0% | |
!! | CTGGTGCTGTGATTGGGAAC+TGG | + | tig0025360:12309-12328 | Msa1422290:CDS | 55.0% |
CACTCCCGGTTCTCTACGAA+AGG | + | tig0025360:12808-12827 | Msa1422290:CDS | 55.0% | |
GGTCCTATATTTGGGGGCGG+AGG | - | tig0025360:12004-12023 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0025360 | gene | 9471 | 13079 | 9471 | ID=Msa1422290;Name=Msa1422290 |
tig0025360 | mRNA | 9471 | 13079 | 9471 | ID=Msa1422290-mRNA-1;Parent=Msa1422290;Name=Msa1422290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=11|1|1|1|0.8|0.66|6|132|279 |
tig0025360 | exon | 9471 | 9575 | 9471 | ID=Msa1422290-mRNA-1:exon:2495;Parent=Msa1422290-mRNA-1 |
tig0025360 | exon | 11204 | 11392 | 11204 | ID=Msa1422290-mRNA-1:exon:2496;Parent=Msa1422290-mRNA-1 |
tig0025360 | exon | 11490 | 11670 | 11490 | ID=Msa1422290-mRNA-1:exon:2497;Parent=Msa1422290-mRNA-1 |
tig0025360 | exon | 11781 | 11928 | 11781 | ID=Msa1422290-mRNA-1:exon:2498;Parent=Msa1422290-mRNA-1 |
tig0025360 | exon | 12290 | 12359 | 12290 | ID=Msa1422290-mRNA-1:exon:2499;Parent=Msa1422290-mRNA-1 |
tig0025360 | exon | 12790 | 13079 | 12790 | ID=Msa1422290-mRNA-1:exon:2500;Parent=Msa1422290-mRNA-1 |
tig0025360 | five_prime_UTR | 9471 | 9481 | 9471 | ID=Msa1422290-mRNA-1:five_prime_utr;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 9482 | 9575 | 9482 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 11204 | 11392 | 11204 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 11490 | 11670 | 11490 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 11781 | 11928 | 11781 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 12290 | 12359 | 12290 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | CDS | 12790 | 12947 | 12790 | ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1 |
tig0025360 | three_prime_UTR | 12948 | 13079 | 12948 | ID=Msa1422290-mRNA-1:three_prime_utr;Parent=Msa1422290-mRNA-1 |
Gene Sequence |
Protein sequence |