AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422290 MtrunA17_Chr5g0442361 97.107 242 6 1 37 278 1 241 4.48e-175 482
Msa1422290 MtrunA17_Chr3g0095441 65.217 230 78 1 37 266 1 228 5.12e-111 320
Msa1422290 MtrunA17_Chr8g0387631 47.418 213 107 2 66 275 42 252 2.41e-68 213
Msa1422290 MtrunA17_Chr8g0348131 44.286 210 111 2 70 275 53 260 1.43e-61 195
Msa1422290 MtrunA17_Chr1g0202401 40.306 196 115 2 78 273 50 243 1.02e-53 174
Msa1422290 MtrunA17_Chr8g0376101 40.500 200 111 2 79 275 21 215 6.92e-52 169
Msa1422290 MtrunA17_Chr1g0209261 36.181 199 115 4 79 275 10 198 1.19e-39 137
Msa1422290 MtrunA17_Chr3g0108661 32.979 188 124 1 77 264 45 230 1.30e-33 122
Msa1422290 MtrunA17_Chr4g0005701 33.163 196 129 1 77 272 5 198 4.32e-29 109
Msa1422290 MtrunA17_Chr6g0453331 31.111 180 122 1 96 275 14 191 1.73e-26 102
Msa1422290 MtrunA17_Chr5g0402811 30.939 181 123 1 91 271 29 207 1.69e-23 95.5
Msa1422290 MtrunA17_Chr1g0208091 33.511 188 123 1 86 273 9 194 4.10e-23 94.0
Msa1422290 MtrunA17_Chr5g0402701 33.333 144 94 1 98 241 344 485 3.89e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422290 AT3G10260.1 56.710 231 96 3 46 276 14 240 1.55e-96 284
Msa1422290 AT3G10260.2 56.710 231 96 3 46 276 14 240 1.55e-96 284
Msa1422290 AT3G10260.3 56.710 231 96 3 46 276 34 260 2.93e-96 284
Msa1422290 AT2G46170.1 45.098 204 110 1 70 273 43 244 2.42e-65 205
Msa1422290 AT3G61560.1 44.118 204 112 1 70 273 43 244 1.18e-63 201
Msa1422290 AT3G61560.2 44.118 204 112 1 70 273 43 244 1.18e-63 201
Msa1422290 AT1G64090.1 41.148 209 117 2 71 275 40 246 4.14e-58 186
Msa1422290 AT4G23630.1 39.899 198 117 1 78 275 72 267 1.67e-57 186
Msa1422290 AT4G23630.2 39.899 198 117 1 78 275 72 267 1.67e-57 186
Msa1422290 AT4G11220.1 37.374 198 122 1 78 275 68 263 9.04e-57 183
Msa1422290 AT5G41600.1 41.089 202 113 3 78 275 51 250 4.66e-55 179
Msa1422290 AT1G64090.2 38.222 225 117 3 71 275 40 262 3.79e-54 177
Msa1422290 AT3G18260.1 38.191 199 121 1 77 275 21 217 2.60e-49 163
Msa1422290 AT4G01230.2 38.916 203 119 1 71 273 46 243 2.83e-49 163
Msa1422290 AT3G61560.3 45.570 158 84 1 70 227 43 198 4.73e-47 156
Msa1422290 AT4G01230.1 37.931 203 119 2 71 273 46 241 7.64e-46 154
Msa1422290 AT2G46170.2 41.912 136 77 1 70 205 43 176 1.86e-35 126
Msa1422290 AT3G10915.7 29.808 208 144 1 65 272 36 241 4.77e-34 124
Msa1422290 AT3G10915.2 30.612 196 134 1 78 273 24 217 6.57e-34 123
Msa1422290 AT3G10915.4 30.457 197 134 2 78 273 24 218 3.79e-32 119
Msa1422290 AT2G15280.1 33.158 190 125 1 83 272 2 189 4.09e-32 117
Msa1422290 AT1G68230.2 33.161 193 121 3 86 276 22 208 1.46e-27 106
Msa1422290 AT3G10915.5 27.523 218 133 3 78 272 24 239 7.63e-27 105
Msa1422290 AT3G19460.1 31.073 177 120 1 87 263 14 188 2.94e-26 102
Msa1422290 AT3G19460.5 31.073 177 120 1 87 263 14 188 2.94e-26 102
Msa1422290 AT3G19460.4 31.073 177 120 1 87 263 14 188 2.94e-26 102
Msa1422290 AT3G10915.6 28.415 183 129 1 90 272 4 184 4.07e-26 102
Msa1422290 AT3G10915.3 28.652 178 125 1 95 272 8 183 6.64e-26 101
Msa1422290 AT3G54120.1 28.708 209 142 3 72 279 1 203 1.91e-21 89.7
Msa1422290 AT3G19460.3 27.103 214 114 5 87 263 14 222 6.00e-20 86.7
Msa1422290 AT3G19460.7 27.103 214 114 5 87 263 14 222 6.00e-20 86.7
Msa1422290 AT1G68230.1 33.793 145 88 3 86 228 22 160 1.14e-16 75.9
Msa1422290 AT3G10915.1 31.200 125 84 1 78 202 24 146 1.74e-16 75.5
Msa1422290 AT2G23640.1 24.713 174 129 1 97 270 18 189 1.54e-14 71.2
Msa1422290 AT2G15280.2 23.684 190 104 2 83 272 2 150 2.32e-11 61.2

Find 67 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCACTTGTGATGAAAT+TGG 0.144159 tig0025360:+12986 Msa1422290:three_prime_UTR
TAGATTCATGTTTATGTAAA+TGG 0.146269 tig0025360:+12945 Msa1422290:exon
ACTTCCCTCTGCTCTCATTC+TGG 0.230194 tig0025360:+9554 Msa1422290:CDS
TGCAGGTTGTAGTATGCTTA+TGG 0.271495 tig0025360:+12285 Msa1422290:intron
TCATGTCTGTACAGTTTCTT+TGG 0.274156 tig0025360:+11622 Msa1422290:CDS
CTGAGGTTAACCGTGGTTTA+AGG 0.278401 tig0025360:+11858 Msa1422290:CDS
TATCCAAGCTTCTTTCCTTT+GGG 0.285834 tig0025360:-12924 None:intergenic
TATAATTAAGCCATTCAAAA+AGG 0.291332 tig0025360:-11563 None:intergenic
CAGTATAGGAAGGTGGATTC+TGG 0.314712 tig0025360:+12885 Msa1422290:CDS
CTATCCAAGCTTCTTTCCTT+TGG 0.317711 tig0025360:-12925 None:intergenic
TATTAACAAAGAAATCTTTC+GGG 0.323201 tig0025360:-11817 None:intergenic
CAGAATCCACCTTCCTATAC+TGG 0.327594 tig0025360:-12884 None:intergenic
GTCCAAACAGTTTATTGAAC+TGG 0.330990 tig0025360:-11331 None:intergenic
TAACCGCTGCAACAACTATA+TGG 0.340621 tig0025360:+11538 Msa1422290:CDS
TTCTCACTTGTGATGAAATT+GGG 0.354995 tig0025360:+12987 Msa1422290:three_prime_UTR
ATATTAACAAAGAAATCTTT+CGG 0.374090 tig0025360:-11818 None:intergenic
CTGGTGCTGTGATTGGGAAC+TGG 0.386885 tig0025360:+12309 Msa1422290:CDS
ATGCTTCCGGCGTGTTTAGC+AGG 0.400253 tig0025360:+11649 Msa1422290:CDS
TCCCAGTTCAATAAACTGTT+TGG 0.402640 tig0025360:+11329 Msa1422290:CDS
TTATGGGCTGGTGCTGTGAT+TGG 0.407728 tig0025360:+12302 Msa1422290:CDS
TTTCTTTGGACAAATGCTTC+CGG 0.425537 tig0025360:+11636 Msa1422290:CDS
GCCATCAAAAGCTCCTCGTT+TGG 0.430625 tig0025360:+11790 Msa1422290:CDS
GCAGGTTGTAGTATGCTTAT+GGG 0.447620 tig0025360:+12286 Msa1422290:intron
TCATACCTTTCGTAGAGAAC+CGG 0.450625 tig0025360:-12813 None:intergenic
TATGGGCTGGTGCTGTGATT+GGG 0.451379 tig0025360:+12303 Msa1422290:CDS
ATCCAAGCTTCTTTCCTTTG+GGG 0.455010 tig0025360:-12923 None:intergenic
GAGCTAGGCATAGAAGTGAT+AGG 0.455942 tig0025360:-11590 None:intergenic
GCAATGAAGTGAAAAGTTAA+CGG 0.456612 tig0025360:-9519 None:intergenic
CTTCAAAATGTTTCATGTGG+AGG 0.472512 tig0025360:+11884 Msa1422290:CDS
AAAGCTTCTGAACACCTTCG+TGG 0.484982 tig0025360:+11241 Msa1422290:CDS
AGTTGTTGCAGCGGTTAAAA+CGG 0.489432 tig0025360:-11532 None:intergenic
ATCCCCAAAGGAAAGAAGCT+TGG 0.496516 tig0025360:+12921 Msa1422290:CDS
ATCAGATGCAAAACCAGTAT+AGG 0.499744 tig0025360:+12871 Msa1422290:CDS
CTTGGCGAGAGGCAAAAGTC+TGG 0.502330 tig0025360:+11269 Msa1422290:CDS
TTTGAAGAAACCTTAAACCA+CGG 0.502721 tig0025360:-11868 None:intergenic
AGTTTGCCTTCACTTCTACA+TGG 0.505250 tig0025360:-11298 None:intergenic
TGTTGCTGCACATACACTCC+CGG 0.528499 tig0025360:+12794 Msa1422290:CDS
TCCAAACAGTTTATTGAACT+GGG 0.530900 tig0025360:-11330 None:intergenic
GTTAATATTGCAACTGCGGT+TGG 0.530904 tig0025360:+11833 Msa1422290:CDS
GATTGATAACTTCGTGTACA+AGG 0.536766 tig0025360:+12842 Msa1422290:CDS
AACACCTTCGTGGAAACACT+TGG 0.537056 tig0025360:+11251 Msa1422290:CDS
TTTCTTCAAAATGTTTCATG+TGG 0.542392 tig0025360:+11881 Msa1422290:CDS
TCAAACCAGAATGAGAGCAG+AGG 0.557384 tig0025360:-9559 None:intergenic
CCACCTAAAATATGGTGCAC+AGG 0.562386 tig0025360:-11362 None:intergenic
GTTGTAGTATGCTTATGGGC+TGG 0.564353 tig0025360:+12290 Msa1422290:CDS
CATACCTTTCGTAGAGAACC+GGG 0.571222 tig0025360:-12812 None:intergenic
TAGCTGCTGATGTCATGTTG+TGG 0.573484 tig0025360:+11487 Msa1422290:intron
TGCAACTGCGGTTGGTACTG+AGG 0.575677 tig0025360:+11841 Msa1422290:CDS
CTTTGTTAATATTGCAACTG+CGG 0.576367 tig0025360:+11829 Msa1422290:CDS
TTCATTCCATGTAGAAGTGA+AGG 0.576828 tig0025360:+11292 Msa1422290:CDS
CACTCCCGGTTCTCTACGAA+AGG 0.578629 tig0025360:+12808 Msa1422290:CDS
CTGCTGATGTCATGTTGTGG+AGG 0.578920 tig0025360:+11490 Msa1422290:CDS
CAAACCAGAATGAGAGCAGA+GGG 0.581385 tig0025360:-9558 None:intergenic
TTTCTTTCCGTAGTGACAGG+AGG 0.604290 tig0025360:+11768 Msa1422290:intron
TGCTGATGTCATGTTGTGGA+GGG 0.606274 tig0025360:+11491 Msa1422290:CDS
ACATGACAAGAACAAGAGCT+AGG 0.612406 tig0025360:-11605 None:intergenic
CTCGCCAAGTGTTTCCACGA+AGG 0.615062 tig0025360:-11255 None:intergenic
GATGCAAAACCAGTATAGGA+AGG 0.625408 tig0025360:+12875 Msa1422290:CDS
GCAAAACCAGTATAGGAAGG+TGG 0.628367 tig0025360:+12878 Msa1422290:CDS
GAGCCATATAGTTGTTGCAG+CGG 0.636566 tig0025360:-11541 None:intergenic
TCGTGGAAACACTTGGCGAG+AGG 0.645330 tig0025360:+11258 Msa1422290:CDS
TTGCTTAGCAAAATCCCCAA+AGG 0.645417 tig0025360:+12909 Msa1422290:CDS
GTTGGTACTGAGGTTAACCG+TGG 0.658377 tig0025360:+11851 Msa1422290:CDS
GAATAACCTGCTAAACACGC+CGG 0.683282 tig0025360:-11655 None:intergenic
AGATAATTCAGAAAAGTGTG+TGG 0.684590 tig0025360:-9485 None:intergenic
AAACAGTTTATTGAACTGGG+AGG 0.721336 tig0025360:-11327 None:intergenic
TCTTTCGGGAGAACCAAACG+AGG 0.723179 tig0025360:-11803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTTTATAAAAAAAT+TGG - tig0025360:9923-9942 None:intergenic 0.0%
!! CATTTAGATAAAAATAAAAT+AGG - tig0025360:11713-11732 None:intergenic 10.0%
!!! TTTATTTTTATCTAAATGTA+TGG + tig0025360:11715-11734 Msa1422290:intron 10.0%
!! ATATTAACAAAGAAATCTTT+CGG - tig0025360:11821-11840 None:intergenic 15.0%
!! ACACATGAATTAAAAAAAAT+TGG - tig0025360:12167-12186 None:intergenic 15.0%
!!! TTTTTTAATTCATGTGTTTT+AGG + tig0025360:12170-12189 Msa1422290:intron 15.0%
!!! TATGATTTTATATTTAGAGA+CGG + tig0025360:12196-12215 Msa1422290:intron 15.0%
!! AATAATTAGAGAAAATATCA+TGG - tig0025360:12404-12423 None:intergenic 15.0%
!!! ATTTTCTCTAATTATTAAGT+TGG + tig0025360:12408-12427 Msa1422290:intron 15.0%
!!! TATTTAGGGATAATATTTTT+AGG - tig0025360:12470-12489 None:intergenic 15.0%
!!! AATAATTTCTTTTTCTATGT+TGG + tig0025360:13047-13066 Msa1422290:three_prime_UTR 15.0%
!! ATGAAAGAGATGAAAAAAAT+GGG - tig0025360:9593-9612 None:intergenic 20.0%
!! AATGAAAGAGATGAAAAAAA+TGG - tig0025360:9594-9613 None:intergenic 20.0%
!! TTGAAAAGGATAAAAGAAAA+TGG - tig0025360:9617-9636 None:intergenic 20.0%
!! AAAACATGAATAGATTGAAA+AGG - tig0025360:9631-9650 None:intergenic 20.0%
!! TCAAAAAGTGATAATAATTG+AGG - tig0025360:9680-9699 None:intergenic 20.0%
!! ATATAAATGATATAACGACA+TGG - tig0025360:9806-9825 None:intergenic 20.0%
!! AAAGTCTAGAAATAAATGTA+AGG + tig0025360:10062-10081 Msa1422290:intron 20.0%
!!! CATTTTCGCTAAAAATAAAA+TGG - tig0025360:10139-10158 None:intergenic 20.0%
!! ATCTGAATTACATTACATAA+TGG - tig0025360:11051-11070 None:intergenic 20.0%
!! AATCATGGAAAAAATCATAA+TGG - tig0025360:11106-11125 None:intergenic 20.0%
!! TATAATTAAGCCATTCAAAA+AGG - tig0025360:11566-11585 None:intergenic 20.0%
!! TATTAACAAAGAAATCTTTC+GGG - tig0025360:11820-11839 None:intergenic 20.0%
!! GATTATAAATGACAAAACAA+AGG - tig0025360:11957-11976 None:intergenic 20.0%
!!! GTATGTTTTAAGCATAAATA+TGG - tig0025360:11979-11998 None:intergenic 20.0%
!!! TTTCATTGTCCTTTTTTAAA+AGG + tig0025360:12035-12054 Msa1422290:intron 20.0%
!! ATGTAGTTGAAAATTTGAAA+GGG - tig0025360:12062-12081 None:intergenic 20.0%
!! AATGTAGTTGAAAATTTGAA+AGG - tig0025360:12063-12082 None:intergenic 20.0%
!! CAACATAATTAGAGATATAA+TGG - tig0025360:12099-12118 None:intergenic 20.0%
!! TTCAACTATTCACTTATTTA+GGG - tig0025360:12484-12503 None:intergenic 20.0%
!! TTTCAACTATTCACTTATTT+AGG - tig0025360:12485-12504 None:intergenic 20.0%
!!! GTTAAAACTTTGTTATGTTA+CGG + tig0025360:12712-12731 Msa1422290:intron 20.0%
!! TAGATTCATGTTTATGTAAA+TGG + tig0025360:12945-12964 Msa1422290:exon 20.0%
!! GAGATAAAAAGAGAATTTTG+TGG + tig0025360:9868-9887 Msa1422290:intron 25.0%
! TAGAAATAAATGTAAGGACA+TGG + tig0025360:10068-10087 Msa1422290:intron 25.0%
! AGAAATAAATGTAAGGACAT+GGG + tig0025360:10069-10088 Msa1422290:intron 25.0%
! TGACATAATTCAATGTAATC+AGG - tig0025360:10261-10280 None:intergenic 25.0%
!!! TTGTTTTTAAAAACCTTGAG+TGG + tig0025360:10521-10540 Msa1422290:intron 25.0%
!!! TGTTTTTAAAAACCTTGAGT+GGG + tig0025360:10522-10541 Msa1422290:intron 25.0%
! ATAAGAGAGAATAAAAGCAA+CGG - tig0025360:10708-10727 None:intergenic 25.0%
! GTATCATCTGAATTACATAA+TGG - tig0025360:10994-11013 None:intergenic 25.0%
! TCCTGTAAAATCTATCATAT+TGG + tig0025360:11420-11439 Msa1422290:intron 25.0%
! TTTCTTCAAAATGTTTCATG+TGG + tig0025360:11881-11900 Msa1422290:CDS 25.0%
! TGTAGTTGAAAATTTGAAAG+GGG - tig0025360:12061-12080 None:intergenic 25.0%
! TTGAAAAACAGAAACATTGA+CGG + tig0025360:12237-12256 Msa1422290:intron 25.0%
!!! TTTTTTACTGTCGTGTATAT+CGG + tig0025360:12338-12357 Msa1422290:CDS 25.0%
! ACACATTGTATCAACAAAAA+AGG - tig0025360:12378-12397 None:intergenic 25.0%
!! TTTTTGTTGATACAATGTGT+TGG + tig0025360:12378-12397 Msa1422290:intron 25.0%
! CTGTTGAAATAGTATTTCAT+CGG + tig0025360:12505-12524 Msa1422290:intron 25.0%
!!! CTTTGTTTTGTTATGTCTTA+AGG + tig0025360:12768-12787 Msa1422290:intron 25.0%
! AGATAATTCAGAAAAGTGTG+TGG - tig0025360:9488-9507 None:intergenic 30.0%
GCAATGAAGTGAAAAGTTAA+CGG - tig0025360:9522-9541 None:intergenic 30.0%
TCTGAAAAACTGTTTGAATG+TGG + tig0025360:9734-9753 Msa1422290:intron 30.0%
TCTTATGAATCACAATTCAG+AGG - tig0025360:9850-9869 None:intergenic 30.0%
TTGAAAGCAGAAAAGCAAAA+GGG - tig0025360:9897-9916 None:intergenic 30.0%
TTTGAAAGCAGAAAAGCAAA+AGG - tig0025360:9898-9917 None:intergenic 30.0%
AAAAGCAAAGTTGAAGAACA+AGG - tig0025360:9971-9990 None:intergenic 30.0%
TAGCGAAAATGAAAAGCAAA+TGG + tig0025360:10148-10167 Msa1422290:intron 30.0%
AGCGAAAATGAAAAGCAAAT+GGG + tig0025360:10149-10168 Msa1422290:intron 30.0%
! CATGATTTTCTGCATTTTCA+AGG - tig0025360:10420-10439 None:intergenic 30.0%
CTTGAAAATGCAGAAAATCA+TGG + tig0025360:10418-10437 Msa1422290:intron 30.0%
!! TTGTGTCGACTTAATCATAA+TGG + tig0025360:10754-10773 Msa1422290:intron 30.0%
! TCAACAATTGAAAGCCTTAT+AGG + tig0025360:10936-10955 Msa1422290:intron 30.0%
CAAACATCAATCACTAATCA+TGG - tig0025360:11121-11140 None:intergenic 30.0%
TTAGTGATTGATGTTTGCAA+CGG + tig0025360:11124-11143 Msa1422290:intron 30.0%
TCCAAACAGTTTATTGAACT+GGG - tig0025360:11333-11352 None:intergenic 30.0%
! ATTTTCCACCACCTAAAATA+TGG - tig0025360:11373-11392 None:intergenic 30.0%
! GCCAATATGATAGATTTTAC+AGG - tig0025360:11424-11443 None:intergenic 30.0%
CAAAAGAAGAAATTCAAGGA+TGG - tig0025360:11683-11702 None:intergenic 30.0%
CAGACAAAAGAAGAAATTCA+AGG - tig0025360:11687-11706 None:intergenic 30.0%
CTTTGTTAATATTGCAACTG+CGG + tig0025360:11829-11848 Msa1422290:CDS 30.0%
TTTGAAGAAACCTTAAACCA+CGG - tig0025360:11871-11890 None:intergenic 30.0%
GACAATGAAAAATCTCAAGA+GGG - tig0025360:12025-12044 None:intergenic 30.0%
! GATTTTATATTTAGAGACGG+AGG + tig0025360:12199-12218 Msa1422290:intron 30.0%
CATTGTATCAACAAAAAAGG+AGG - tig0025360:12375-12394 None:intergenic 30.0%
TCAAGAATTCTCTCTTTGTT+TGG - tig0025360:12551-12570 None:intergenic 30.0%
TTTCTCACTTGTGATGAAAT+TGG + tig0025360:12986-13005 Msa1422290:three_prime_UTR 30.0%
TTCTCACTTGTGATGAAATT+GGG + tig0025360:12987-13006 Msa1422290:three_prime_UTR 30.0%
!!! TGTGTTTGTTGCTTTTACTT+TGG + tig0025360:13017-13036 Msa1422290:three_prime_UTR 30.0%
!! CTTTTCACTTCATTGCTGTT+TGG + tig0025360:9526-9545 Msa1422290:CDS 35.0%
TTTGAATGTGGTTGTGAGAA+GGG + tig0025360:9746-9765 Msa1422290:intron 35.0%
! ATCACAATTCAGAGGCATAA+AGG - tig0025360:9842-9861 None:intergenic 35.0%
ATGGAAAGCAAATTCAACCA+TGG - tig0025360:10120-10139 None:intergenic 35.0%
GCTTAAAAACCTTGATGTTG+CGG + tig0025360:10479-10498 Msa1422290:intron 35.0%
!!! GACCTTTTTGGTTTGTGAAA+CGG + tig0025360:10556-10575 Msa1422290:intron 35.0%
TTCATTCCATGTAGAAGTGA+AGG + tig0025360:11292-11311 Msa1422290:CDS 35.0%
AAACAGTTTATTGAACTGGG+AGG - tig0025360:11330-11349 None:intergenic 35.0%
TCCCAGTTCAATAAACTGTT+TGG + tig0025360:11329-11348 Msa1422290:CDS 35.0%
GTCCAAACAGTTTATTGAAC+TGG - tig0025360:11334-11353 None:intergenic 35.0%
! AAACCTGTGCACCATATTTT+AGG + tig0025360:11359-11378 Msa1422290:CDS 35.0%
! CTATATGGCTCCTTTTTGAA+TGG + tig0025360:11553-11572 Msa1422290:CDS 35.0%
TCATGTCTGTACAGTTTCTT+TGG + tig0025360:11622-11641 Msa1422290:CDS 35.0%
TTTCTTTGGACAAATGCTTC+CGG + tig0025360:11636-11655 Msa1422290:CDS 35.0%
CTTCAAAATGTTTCATGTGG+AGG + tig0025360:11884-11903 Msa1422290:CDS 35.0%
GGACAATGAAAAATCTCAAG+AGG - tig0025360:12026-12045 None:intergenic 35.0%
!! TGAAAGGGGCCTTTTAAAAA+AGG - tig0025360:12047-12066 None:intergenic 35.0%
TTTATATTTAGAGACGGAGG+TGG + tig0025360:12202-12221 Msa1422290:intron 35.0%
ATCATGCTTAAAACATCTGC+AGG + tig0025360:12268-12287 Msa1422290:intron 35.0%
AACAGCAAACTCGGTTAATT+GGG - tig0025360:12617-12636 None:intergenic 35.0%
TAACAGCAAACTCGGTTAAT+TGG - tig0025360:12618-12637 None:intergenic 35.0%
TTACCACGAAACACTTAACA+AGG - tig0025360:12680-12699 None:intergenic 35.0%
! GATTGATAACTTCGTGTACA+AGG + tig0025360:12842-12861 Msa1422290:CDS 35.0%
ATCAGATGCAAAACCAGTAT+AGG + tig0025360:12871-12890 Msa1422290:CDS 35.0%
TATCCAAGCTTCTTTCCTTT+GGG - tig0025360:12927-12946 None:intergenic 35.0%
GTTTGAATGTGGTTGTGAGA+AGG + tig0025360:9745-9764 Msa1422290:intron 40.0%
TGTGAGAAGGGAATTGACTA+TGG + tig0025360:9758-9777 Msa1422290:intron 40.0%
TCAACCATGGAAAGACACTT+TGG - tig0025360:10107-10126 None:intergenic 40.0%
TCCTAATGTCTGACATGCAT+CGG + tig0025360:10209-10228 Msa1422290:intron 40.0%
TATACCCGTGCTTCATAGAT+GGG + tig0025360:10362-10381 Msa1422290:intron 40.0%
AAGCTTCTACAACCACATTG+AGG - tig0025360:10463-10482 None:intergenic 40.0%
! GAATGCTGTCTTGACCTTTT+TGG + tig0025360:10544-10563 Msa1422290:intron 40.0%
GTCCGTTTCACAAACCAAAA+AGG - tig0025360:10561-10580 None:intergenic 40.0%
TTATCATAAAGACCAGCCTG+TGG + tig0025360:10724-10743 Msa1422290:intron 40.0%
ACCGAGCTTTGCTAAAAGTT+TGG + tig0025360:10777-10796 Msa1422290:intron 40.0%
! GCCAAACTTTTAGCAAAGCT+CGG - tig0025360:10781-10800 None:intergenic 40.0%
! CGACTTGTGACTTTTGTGAT+TGG - tig0025360:10864-10883 None:intergenic 40.0%
TTGATGTTTGCAACGGTGTT+AGG + tig0025360:11131-11150 Msa1422290:intron 40.0%
AGTTTGCCTTCACTTCTACA+TGG - tig0025360:11301-11320 None:intergenic 40.0%
AGTTGTTGCAGCGGTTAAAA+CGG - tig0025360:11535-11554 None:intergenic 40.0%
TAACCGCTGCAACAACTATA+TGG + tig0025360:11538-11557 Msa1422290:CDS 40.0%
ACATGACAAGAACAAGAGCT+AGG - tig0025360:11608-11627 None:intergenic 40.0%
! TTGTTTCTTTCCGTAGTGAC+AGG + tig0025360:11765-11784 Msa1422290:intron 40.0%
GTTAATATTGCAACTGCGGT+TGG + tig0025360:11833-11852 Msa1422290:CDS 40.0%
TCAAGAGGGTCCTATATTTG+GGG - tig0025360:12011-12030 None:intergenic 40.0%
CTCAAGAGGGTCCTATATTT+GGG - tig0025360:12012-12031 None:intergenic 40.0%
TCTCAAGAGGGTCCTATATT+TGG - tig0025360:12013-12032 None:intergenic 40.0%
TGCAGGTTGTAGTATGCTTA+TGG + tig0025360:12285-12304 Msa1422290:intron 40.0%
GCAGGTTGTAGTATGCTTAT+GGG + tig0025360:12286-12305 Msa1422290:intron 40.0%
!! AACCGAGTTTGCTGTTATCT+CGG + tig0025360:12621-12640 Msa1422290:intron 40.0%
TCACCTTGTTAAGTGTTTCG+TGG + tig0025360:12674-12693 Msa1422290:intron 40.0%
TCATACCTTTCGTAGAGAAC+CGG - tig0025360:12816-12835 None:intergenic 40.0%
GATGCAAAACCAGTATAGGA+AGG + tig0025360:12875-12894 Msa1422290:CDS 40.0%
TTGCTTAGCAAAATCCCCAA+AGG + tig0025360:12909-12928 Msa1422290:CDS 40.0%
ATCCAAGCTTCTTTCCTTTG+GGG - tig0025360:12926-12945 None:intergenic 40.0%
CTATCCAAGCTTCTTTCCTT+TGG - tig0025360:12928-12947 None:intergenic 40.0%
CAAACCAGAATGAGAGCAGA+GGG - tig0025360:9561-9580 None:intergenic 45.0%
TCAAACCAGAATGAGAGCAG+AGG - tig0025360:9562-9581 None:intergenic 45.0%
ATTAGGACACGCCTAATCCA+AGG - tig0025360:10196-10215 None:intergenic 45.0%
ACCGATGCATGTCAGACATT+AGG - tig0025360:10213-10232 None:intergenic 45.0%
! ATGTTTCTGTGTGTCGTGTC+TGG + tig0025360:10307-10326 Msa1422290:intron 45.0%
GTGTCTGTGTCTATACTGTC+TGG + tig0025360:10329-10348 Msa1422290:intron 45.0%
CTATACCCGTGCTTCATAGA+TGG + tig0025360:10361-10380 Msa1422290:intron 45.0%
TGTTCCCATCTATGAAGCAC+GGG - tig0025360:10369-10388 None:intergenic 45.0%
GTGTTCCCATCTATGAAGCA+CGG - tig0025360:10370-10389 None:intergenic 45.0%
GTGCTTCATAGATGGGAACA+CGG + tig0025360:10369-10388 Msa1422290:intron 45.0%
TAGTCAATGCAGCCTCAATG+TGG + tig0025360:10448-10467 Msa1422290:intron 45.0%
ACAATCTGCAACCGCAATTG+CGG - tig0025360:10505-10524 None:intergenic 45.0%
! AGCCTTATAGGCTCTAGTTG+AGG + tig0025360:10948-10967 Msa1422290:intron 45.0%
! GCCTTATAGGCTCTAGTTGA+GGG + tig0025360:10949-10968 Msa1422290:intron 45.0%
ACCCTCAACTAGAGCCTATA+AGG - tig0025360:10953-10972 None:intergenic 45.0%
! GGTGTTCAGAAGCTTTTCAG+CGG - tig0025360:11237-11256 None:intergenic 45.0%
AAAGCTTCTGAACACCTTCG+TGG + tig0025360:11241-11260 Msa1422290:CDS 45.0%
AACACCTTCGTGGAAACACT+TGG + tig0025360:11251-11270 Msa1422290:CDS 45.0%
CCACCTAAAATATGGTGCAC+AGG - tig0025360:11365-11384 None:intergenic 45.0%
!! CCTGTGCACCATATTTTAGG+TGG + tig0025360:11362-11381 Msa1422290:CDS 45.0%
!! GTGCACCATATTTTAGGTGG+TGG + tig0025360:11365-11384 Msa1422290:CDS 45.0%
TAGCTGCTGATGTCATGTTG+TGG + tig0025360:11487-11506 Msa1422290:intron 45.0%
TGCTGATGTCATGTTGTGGA+GGG + tig0025360:11491-11510 Msa1422290:CDS 45.0%
GAGCCATATAGTTGTTGCAG+CGG - tig0025360:11544-11563 None:intergenic 45.0%
GAGCTAGGCATAGAAGTGAT+AGG - tig0025360:11593-11612 None:intergenic 45.0%
GAATAACCTGCTAAACACGC+CGG - tig0025360:11658-11677 None:intergenic 45.0%
TTTCTTTCCGTAGTGACAGG+AGG + tig0025360:11768-11787 Msa1422290:intron 45.0%
! ACCAAACGAGGAGCTTTTGA+TGG - tig0025360:11794-11813 None:intergenic 45.0%
CTGAGGTTAACCGTGGTTTA+AGG + tig0025360:11858-11877 Msa1422290:CDS 45.0%
CAAGAGGGTCCTATATTTGG+GGG - tig0025360:12010-12029 None:intergenic 45.0%
GTTGTAGTATGCTTATGGGC+TGG + tig0025360:12290-12309 Msa1422290:CDS 45.0%
CACCGAGATAACAGCAAACT+CGG - tig0025360:12626-12645 None:intergenic 45.0%
!! TTTGCTGTTATCTCGGTGTG+TGG + tig0025360:12628-12647 Msa1422290:intron 45.0%
CATACCTTTCGTAGAGAACC+GGG - tig0025360:12815-12834 None:intergenic 45.0%
GCAAAACCAGTATAGGAAGG+TGG + tig0025360:12878-12897 Msa1422290:CDS 45.0%
CAGAATCCACCTTCCTATAC+TGG - tig0025360:12887-12906 None:intergenic 45.0%
! CAGTATAGGAAGGTGGATTC+TGG + tig0025360:12885-12904 Msa1422290:CDS 45.0%
ATCCCCAAAGGAAAGAAGCT+TGG + tig0025360:12921-12940 Msa1422290:CDS 45.0%
ACTTCCCTCTGCTCTCATTC+TGG + tig0025360:9554-9573 Msa1422290:CDS 50.0%
CCATGGAAAGACACTTTGGC+AGG - tig0025360:10103-10122 None:intergenic 50.0%
! CCTGCCAAAGTGTCTTTCCA+TGG + tig0025360:10100-10119 Msa1422290:intron 50.0%
!! AAGGAGCGTCTCAGCTTCAT+AGG - tig0025360:10177-10196 None:intergenic 50.0%
TATGAAGCTGAGACGCTCCT+TGG + tig0025360:10176-10195 Msa1422290:intron 50.0%
! TGTCAGTGTCGTGTTGGTGT+CGG - tig0025360:10238-10257 None:intergenic 50.0%
ATCAGGTGTCAGTGTCGTGT+TGG - tig0025360:10244-10263 None:intergenic 50.0%
CAAGACAGCATTCCCACTCA+AGG - tig0025360:10537-10556 None:intergenic 50.0%
TCCAGTCAAGTGCAGGAATC+TGG + tig0025360:10675-10694 Msa1422290:intron 50.0%
CCAGTCAAGTGCAGGAATCT+GGG + tig0025360:10676-10695 Msa1422290:intron 50.0%
TCGACACAATCACACACCAC+AGG - tig0025360:10743-10762 None:intergenic 50.0%
CTGCTGATGTCATGTTGTGG+AGG + tig0025360:11490-11509 Msa1422290:CDS 50.0%
! TTGATGGCCTCCTGTCACTA+CGG - tig0025360:11778-11797 None:intergenic 50.0%
GCCATCAAAAGCTCCTCGTT+TGG + tig0025360:11790-11809 Msa1422290:CDS 50.0%
TCTTTCGGGAGAACCAAACG+AGG - tig0025360:11806-11825 None:intergenic 50.0%
! GTTGGTACTGAGGTTAACCG+TGG + tig0025360:11851-11870 Msa1422290:CDS 50.0%
!! TTATGGGCTGGTGCTGTGAT+TGG + tig0025360:12302-12321 Msa1422290:CDS 50.0%
!! TATGGGCTGGTGCTGTGATT+GGG + tig0025360:12303-12322 Msa1422290:CDS 50.0%
TGTTGCTGCACATACACTCC+CGG + tig0025360:12794-12813 Msa1422290:CDS 50.0%
GCTGAGACGCTCCTTGGATT+AGG + tig0025360:10182-10201 Msa1422290:intron 55.0%
CAATTGCGGCCGCAACATCA+AGG - tig0025360:10491-10510 None:intergenic 55.0%
TGATGTTGCGGCCGCAATTG+CGG + tig0025360:10491-10510 Msa1422290:intron 55.0%
TGCACAGTCCAGTCAAGTGC+AGG + tig0025360:10668-10687 Msa1422290:intron 55.0%
CCCAGATTCCTGCACTTGAC+TGG - tig0025360:10679-10698 None:intergenic 55.0%
CACAATCACACACCACAGGC+TGG - tig0025360:10739-10758 None:intergenic 55.0%
CTCGCCAAGTGTTTCCACGA+AGG - tig0025360:11258-11277 None:intergenic 55.0%
TCGTGGAAACACTTGGCGAG+AGG + tig0025360:11258-11277 Msa1422290:CDS 55.0%
CTTGGCGAGAGGCAAAAGTC+TGG + tig0025360:11269-11288 Msa1422290:CDS 55.0%
ATGCTTCCGGCGTGTTTAGC+AGG + tig0025360:11649-11668 Msa1422290:CDS 55.0%
! TGCAACTGCGGTTGGTACTG+AGG + tig0025360:11841-11860 Msa1422290:CDS 55.0%
CTACCTCCGCCCCCAAATAT+AGG + tig0025360:11998-12017 Msa1422290:intron 55.0%
GAGGGTCCTATATTTGGGGG+CGG - tig0025360:12007-12026 None:intergenic 55.0%
!! CTGGTGCTGTGATTGGGAAC+TGG + tig0025360:12309-12328 Msa1422290:CDS 55.0%
CACTCCCGGTTCTCTACGAA+AGG + tig0025360:12808-12827 Msa1422290:CDS 55.0%
GGTCCTATATTTGGGGGCGG+AGG - tig0025360:12004-12023 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0025360 gene 9471 13079 9471 ID=Msa1422290;Name=Msa1422290
tig0025360 mRNA 9471 13079 9471 ID=Msa1422290-mRNA-1;Parent=Msa1422290;Name=Msa1422290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=11|1|1|1|0.8|0.66|6|132|279
tig0025360 exon 9471 9575 9471 ID=Msa1422290-mRNA-1:exon:2495;Parent=Msa1422290-mRNA-1
tig0025360 exon 11204 11392 11204 ID=Msa1422290-mRNA-1:exon:2496;Parent=Msa1422290-mRNA-1
tig0025360 exon 11490 11670 11490 ID=Msa1422290-mRNA-1:exon:2497;Parent=Msa1422290-mRNA-1
tig0025360 exon 11781 11928 11781 ID=Msa1422290-mRNA-1:exon:2498;Parent=Msa1422290-mRNA-1
tig0025360 exon 12290 12359 12290 ID=Msa1422290-mRNA-1:exon:2499;Parent=Msa1422290-mRNA-1
tig0025360 exon 12790 13079 12790 ID=Msa1422290-mRNA-1:exon:2500;Parent=Msa1422290-mRNA-1
tig0025360 five_prime_UTR 9471 9481 9471 ID=Msa1422290-mRNA-1:five_prime_utr;Parent=Msa1422290-mRNA-1
tig0025360 CDS 9482 9575 9482 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 CDS 11204 11392 11204 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 CDS 11490 11670 11490 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 CDS 11781 11928 11781 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 CDS 12290 12359 12290 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 CDS 12790 12947 12790 ID=Msa1422290-mRNA-1:cds;Parent=Msa1422290-mRNA-1
tig0025360 three_prime_UTR 12948 13079 12948 ID=Msa1422290-mRNA-1:three_prime_utr;Parent=Msa1422290-mRNA-1
Gene Sequence

>Msa1422290

ATGCCACACACTTTTCTGAATTATCTTAGCTTCTTCTCCGTTAACTTTTCACTTCATTGCTGTTTGGCTTCTACTTCCCTCTGCTCTCATTCTGATTTTACAGAAACAATGTCTGAGAATTTTACCGCTGAAAAGCTTCTGAACACCTTCGTGGAAACACTTGGCGAGAGGCAAAAGTCTGGTTCATTCCATGTAGAAGTGAAGGCAAACTCAATGACCTCCCAGTTCAATAAACTGTTTGGACGCGAGAAACCTGTGCACCATATTTTAGGTGGTGGAAAATCTGCTGATGTCATGTTGTGGAGGGACAAGAAGATCTCTGCAGCCGTTTTAACCGCTGCAACAACTATATGGCTCCTTTTTGAATGGCTTAATTATAATTTCCTATCACTTCTATGCCTAGCTCTTGTTCTTGTCATGTCTGTACAGTTTCTTTGGACAAATGCTTCCGGCGTGTTTAGCAGTGACAGGAGGCCATCAAAAGCTCCTCGTTTGGTTCTCCCGAAAGATTTCTTTGTTAATATTGCAACTGCGGTTGGTACTGAGGTTAACCGTGGTTTAAGGTTTCTTCAAAATGTTTCATGTGGAGGAAACTTGAAGCAATTTGTTATTGTTGTAGTATGCTTATGGGCTGGTGCTGTGATTGGGAACTGGTTCAATTTTTTTACTGTCGTGTATATCGGTTTTGTTGCTGCACATACACTCCCGGTTCTCTACGAAAGGTATGACGATCAGATTGATAACTTCGTGTACAAGGTACTTGATCAGATGCAAAACCAGTATAGGAAGGTGGATTCTGGTTTGCTTAGCAAAATCCCCAAAGGAAAGAAGCTTGGATAG

Protein sequence

>Msa1422290

MPHTFLNYLSFFSVNFSLHCCLASTSLCSHSDFTETMSENFTAEKLLNTFVETLGERQKSGSFHVEVKANSMTSQFNKLFGREKPVHHILGGGKSADVMLWRDKKISAAVLTAATTIWLLFEWLNYNFLSLLCLALVLVMSVQFLWTNASGVFSSDRRPSKAPRLVLPKDFFVNIATAVGTEVNRGLRFLQNVSCGGNLKQFVIVVVCLWAGAVIGNWFNFFTVVYIGFVAAHTLPVLYERYDDQIDNFVYKVLDQMQNQYRKVDSGLLSKIPKGKKLG*