Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419190 | A0A396I3C8 | 92.959 | 980 | 66 | 3 | 26 | 1003 | 1 | 979 | 0.0 | 1786 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0171850 | Msa1419190 | 0.807541 | 4.806195e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419190 | MtrunA17_Chr4g0011741 | 92.959 | 980 | 66 | 3 | 26 | 1003 | 1 | 979 | 0.0 | 1786 |
| Msa1419190 | MtrunA17_Chr6g0472201 | 51.942 | 412 | 170 | 5 | 562 | 967 | 29 | 418 | 1.79e-140 | 427 |
| Msa1419190 | MtrunA17_Chr3g0096851 | 57.377 | 244 | 96 | 2 | 562 | 800 | 29 | 269 | 9.24e-96 | 304 |
| Msa1419190 | MtrunA17_Chr7g0226581 | 68.900 | 209 | 57 | 2 | 722 | 930 | 1 | 201 | 6.57e-89 | 286 |
| Msa1419190 | MtrunA17_Chr5g0409781 | 77.519 | 129 | 29 | 0 | 634 | 762 | 47 | 175 | 7.05e-67 | 222 |
| Msa1419190 | MtrunA17_Chr2g0306531 | 41.270 | 189 | 89 | 6 | 748 | 930 | 2 | 174 | 2.72e-32 | 125 |
| Msa1419190 | MtrunA17_Chr2g0306521 | 46.316 | 95 | 50 | 1 | 585 | 678 | 236 | 330 | 2.58e-23 | 102 |
| Msa1419190 | MtrunA17_Chr7g0226591 | 41.007 | 139 | 62 | 5 | 202 | 327 | 62 | 193 | 6.14e-16 | 77.8 |
| Msa1419190 | MtrunA17_Chr7g0226591 | 44.928 | 138 | 55 | 7 | 471 | 594 | 70 | 200 | 4.83e-14 | 72.0 |
| Msa1419190 | MtrunA17_Chr2g0305311 | 24.308 | 325 | 220 | 10 | 619 | 939 | 183 | 485 | 2.79e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419190 | AT1G40087.1 | 27.037 | 270 | 171 | 9 | 620 | 867 | 73 | 338 | 1.13e-18 | 90.1 |
| Msa1419190 | AT3G30200.1 | 26.667 | 270 | 176 | 8 | 616 | 867 | 193 | 458 | 1.17e-18 | 91.3 |
Find 188 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTCCCCTTCTTCATTTA+AGG | 0.093712 | tig0024677:+59035 | None:intergenic |
| AACATCCACTTTATACTTTC+TGG | 0.100460 | tig0024677:+60757 | None:intergenic |
| TTGAATCACAAAGGTGATTT+TGG | 0.177757 | tig0024677:-56814 | Msa1419190:three_prime_UTR |
| TATCACAATGAAAGTAAATA+AGG | 0.196877 | tig0024677:-63743 | Msa1419190:CDS |
| CATTGATGATTTCAGGAAAT+TGG | 0.204677 | tig0024677:-58519 | Msa1419190:intron |
| GTCCTCTTACTTACACTAAT+TGG | 0.212199 | tig0024677:-58939 | Msa1419190:CDS |
| CATATATTCTCCTTCTTCTT+TGG | 0.215996 | tig0024677:+58907 | None:intergenic |
| TAGGAAATTAATGATTTATT+GGG | 0.227619 | tig0024677:-58630 | Msa1419190:CDS |
| CCATGGCAGCGCACTCTTCC+AGG | 0.230720 | tig0024677:+57794 | None:intergenic |
| AAAACTTACAATTGTGTTAC+TGG | 0.234856 | tig0024677:+57973 | None:intergenic |
| GCCCATTATTGTGGTCATTT+GGG | 0.242734 | tig0024677:+57522 | None:intergenic |
| TTAGGAAATTAATGATTTAT+TGG | 0.243216 | tig0024677:-58631 | Msa1419190:CDS |
| CCTTATGATAGCAAAGCTTA+TGG | 0.259101 | tig0024677:+58443 | None:intergenic |
| CACGATCGACAAGGTCCTTT+TGG | 0.259459 | tig0024677:+61891 | None:intergenic |
| AGCCCATTATTGTGGTCATT+TGG | 0.275452 | tig0024677:+57521 | None:intergenic |
| TTGAAAAGAAGTAAAGAAAT+TGG | 0.277839 | tig0024677:-57749 | Msa1419190:CDS |
| AGATACATTGTTCCTGAAAA+AGG | 0.278882 | tig0024677:-58791 | Msa1419190:CDS |
| GGAAATTGCAAGTTCTTCTA+AGG | 0.286199 | tig0024677:-57607 | Msa1419190:CDS |
| GATAAGAACACAAACCTTAT+AGG | 0.293069 | tig0024677:-57028 | Msa1419190:three_prime_UTR |
| ACCGATGTAAACATCATCTT+TGG | 0.298416 | tig0024677:+63445 | None:intergenic |
| CAAAGAAGAAGGAGAATATA+TGG | 0.298681 | tig0024677:-58906 | Msa1419190:CDS |
| GCAAAGTTCTAGTTTAAATC+AGG | 0.322392 | tig0024677:-63105 | Msa1419190:CDS |
| GATTCTATTATCAACCTATA+AGG | 0.323753 | tig0024677:+57014 | None:intergenic |
| ACCCCAAATGACCACAATAA+TGG | 0.333226 | tig0024677:-57524 | Msa1419190:CDS |
| ACCTTCCATTGGATTGTCAT+TGG | 0.333646 | tig0024677:+59694 | None:intergenic |
| GCCACTTGGATTGAACTTCC+AGG | 0.341080 | tig0024677:+62813 | None:intergenic |
| CAATTGTGTTACTGGTAACT+TGG | 0.347417 | tig0024677:+57981 | None:intergenic |
| CAAGATTTGATCGTAAATTC+TGG | 0.349141 | tig0024677:-57863 | Msa1419190:CDS |
| AGTGACACTGAGGGAATCTT+TGG | 0.349893 | tig0024677:+61842 | None:intergenic |
| TATCTTGGTCTGAATTGCTT+TGG | 0.356836 | tig0024677:+57573 | None:intergenic |
| AATTTCCTAAAGTCTGCTTC+TGG | 0.359358 | tig0024677:+58644 | None:intergenic |
| CCCCAAATGACCACAATAAT+GGG | 0.360164 | tig0024677:-57523 | Msa1419190:CDS |
| CAAGAGGACCTTGTTGATCA+TGG | 0.361988 | tig0024677:-59875 | Msa1419190:CDS |
| AACATACCTCATCATTATTT+AGG | 0.362058 | tig0024677:+57474 | None:intergenic |
| CCTTTGGTCATTCTTTAGAA+TGG | 0.364604 | tig0024677:+62854 | None:intergenic |
| TCAATGATTGTTGTATCCTT+TGG | 0.381600 | tig0024677:+62838 | None:intergenic |
| CTTATGATAGCAAAGCTTAT+GGG | 0.385281 | tig0024677:+58444 | None:intergenic |
| GCAGAGGACTTTGTAATGTC+TGG | 0.390946 | tig0024677:+63179 | None:intergenic |
| AAGCAATTCAGACCAAGATA+TGG | 0.396175 | tig0024677:-57570 | Msa1419190:CDS |
| CGTTTGATCATGCTTGAGAA+TGG | 0.397941 | tig0024677:+63004 | None:intergenic |
| GTAGGGGTGTTACCTTTCAT+TGG | 0.400408 | tig0024677:+61686 | None:intergenic |
| ACCTTTGTGATTCAACAATC+TGG | 0.402367 | tig0024677:+56822 | None:intergenic |
| CGTAAATTCTGGTCAGTCTT+CGG | 0.402447 | tig0024677:-57852 | Msa1419190:CDS |
| CCGTTGTTCATGCATGAGAA+TGG | 0.406746 | tig0024677:+60534 | None:intergenic |
| CCATAAGCTTTGCTATCATA+AGG | 0.406969 | tig0024677:-58443 | Msa1419190:CDS |
| ACATACCAGAAGCAGACTTT+AGG | 0.407882 | tig0024677:-58649 | Msa1419190:CDS |
| ATCACAATGAAAGTAAATAA+GGG | 0.408475 | tig0024677:-63742 | Msa1419190:CDS |
| ATTAACTCTGAAAGTGATAA+TGG | 0.409576 | tig0024677:-59764 | Msa1419190:CDS |
| TCAAAGATTGTTGTTTCCTC+AGG | 0.411003 | tig0024677:+60422 | None:intergenic |
| AAGTGACAAGATTCAAGAAA+TGG | 0.411534 | tig0024677:-57687 | Msa1419190:CDS |
| ACTTACAGTTCTCCACTAGA+AGG | 0.419485 | tig0024677:+60950 | None:intergenic |
| CTTCCCAGTCATGAAAAGAT+TGG | 0.424153 | tig0024677:+57112 | None:intergenic |
| CATCAGACAATTGTTCTTCA+AGG | 0.426301 | tig0024677:+57259 | None:intergenic |
| GGAAGATCAATCCAAGTTGC+AGG | 0.427190 | tig0024677:-62960 | Msa1419190:CDS |
| TAATCATCAAGTGACATTGA+TGG | 0.431600 | tig0024677:+59827 | None:intergenic |
| CTGTTGATCATGCTTGAGAA+TGG | 0.432349 | tig0024677:+60630 | None:intergenic |
| CCGATGTAAACATCATCTTT+GGG | 0.444317 | tig0024677:+63446 | None:intergenic |
| TTTCTTTACCGAAGATAGTT+CGG | 0.446641 | tig0024677:+57819 | None:intergenic |
| GGAAAAGGAGGCACGCGACT+TGG | 0.446853 | tig0024677:-63721 | Msa1419190:CDS |
| TCTGCTTCTGGTATGTTGTC+TGG | 0.448187 | tig0024677:+58656 | None:intergenic |
| AACTCGATAACGATGTCGTT+TGG | 0.451029 | tig0024677:-56899 | Msa1419190:three_prime_UTR |
| TTCCAATTAGTGTAAGTAAG+AGG | 0.461637 | tig0024677:+58937 | None:intergenic |
| GAAATCACCTTAAATGAAGA+AGG | 0.461651 | tig0024677:-59042 | Msa1419190:CDS |
| ACTAATGTAAACATCAGCTT+TGG | 0.464189 | tig0024677:+60997 | None:intergenic |
| CCCATTATTGTGGTCATTTG+GGG | 0.468524 | tig0024677:+57523 | None:intergenic |
| CTAGTGGGCCACTCTCGGTT+AGG | 0.470673 | tig0024677:-61947 | Msa1419190:intron |
| CCTGGAAGAGTGCGCTGCCA+TGG | 0.474546 | tig0024677:-57794 | Msa1419190:CDS |
| GAAGCATTCCGAACTATCTT+CGG | 0.475610 | tig0024677:-57827 | Msa1419190:CDS |
| AGCAATTCAGACCAAGATAT+GGG | 0.476590 | tig0024677:-57569 | Msa1419190:CDS |
| TCATCTTCCAAGTCATCAAA+AGG | 0.480538 | tig0024677:+57210 | None:intergenic |
| TCATTTCCAAAGTCATCAAA+AGG | 0.481346 | tig0024677:+57174 | None:intergenic |
| ATGCTATAATAAATGATGCT+TGG | 0.483767 | tig0024677:-58754 | Msa1419190:CDS |
| CTCATCATTATTTAGGCCAT+GGG | 0.484311 | tig0024677:+57481 | None:intergenic |
| CCTCATCATTATTTAGGCCA+TGG | 0.484321 | tig0024677:+57480 | None:intergenic |
| ATGAAAGTAAATAAGGGAAA+AGG | 0.485460 | tig0024677:-63736 | Msa1419190:CDS |
| TTCTTCTGCTCAATTCCAAA+AGG | 0.487887 | tig0024677:-61906 | Msa1419190:CDS |
| CCTCAGGTCATGCATGAGAA+TGG | 0.488919 | tig0024677:+60438 | None:intergenic |
| TTTGAGCAGATCCTGCAACT+TGG | 0.490867 | tig0024677:+62949 | None:intergenic |
| TTGAGAATGGATCGACTAGC+GGG | 0.493143 | tig0024677:+60643 | None:intergenic |
| ACATTAGTTCACAACTCAAA+CGG | 0.494455 | tig0024677:-60982 | Msa1419190:CDS |
| GGCCACTCTCGGTTAGGTGG+TGG | 0.496350 | tig0024677:-61941 | Msa1419190:CDS |
| GTAGGGGTGTTACCTTCCAT+TGG | 0.499221 | tig0024677:+59683 | None:intergenic |
| GTGGGCCGGTCTCAGTTCGT+TGG | 0.511416 | tig0024677:-59923 | Msa1419190:CDS |
| TTTGAGCAGATCCTGCCACT+TGG | 0.512670 | tig0024677:+60383 | None:intergenic |
| AAAGAAGAAGGAGAATATAT+GGG | 0.517336 | tig0024677:-58905 | Msa1419190:CDS |
| TTCTCCACTACAAGGTGGCA+TGG | 0.521633 | tig0024677:+63406 | None:intergenic |
| TTAAATTTATCTTACTTGAA+CGG | 0.522475 | tig0024677:+58598 | None:intergenic |
| AAACAACAATCTTTGACAGC+TGG | 0.523878 | tig0024677:-60415 | Msa1419190:CDS |
| ACATCGGTGCACAACTCAAA+CGG | 0.524605 | tig0024677:-63430 | Msa1419190:CDS |
| TTCTAGTTTAAATCAGGGGA+TGG | 0.525203 | tig0024677:-63099 | Msa1419190:CDS |
| CGTAATATTACCAGCTGCAG+AGG | 0.525968 | tig0024677:-63912 | Msa1419190:CDS |
| ATGACTACTATAGACTCTGC+TGG | 0.527721 | tig0024677:-63032 | Msa1419190:CDS |
| ATTTCTTCTCTTTCAGCAAG+TGG | 0.528393 | tig0024677:+59060 | None:intergenic |
| ATTACCATCACCTCTGCAGC+TGG | 0.531115 | tig0024677:+63902 | None:intergenic |
| AAAACTTCAGCTTGAGTAGG+AGG | 0.531759 | tig0024677:+58043 | None:intergenic |
| CAAAGTTCTAGTTTAAATCA+GGG | 0.532231 | tig0024677:-63104 | Msa1419190:CDS |
| GAAACACGACAAAGTAAGAA+AGG | 0.532579 | tig0024677:-58016 | Msa1419190:CDS |
| AAAGAGATGGCAGCAATGGA+GGG | 0.533542 | tig0024677:-57629 | Msa1419190:CDS |
| CATAAGCTTTGCTATCATAA+GGG | 0.534866 | tig0024677:-58442 | Msa1419190:CDS |
| TAAAAGAGAAGCTAATATCA+TGG | 0.537021 | tig0024677:-56945 | Msa1419190:three_prime_UTR |
| TTTGCGCAGATCCTGCCACT+TGG | 0.537377 | tig0024677:+62799 | None:intergenic |
| GGAAGTTCAATCCAAGTGGC+AGG | 0.538723 | tig0024677:-62810 | Msa1419190:CDS |
| TCTCCACTACAAGGTGGCAT+GGG | 0.539275 | tig0024677:+63407 | None:intergenic |
| AGTGATAATGGTGATGTTGA+GGG | 0.539299 | tig0024677:-59752 | Msa1419190:CDS |
| AGAACAACATACCGACGACT+TGG | 0.539872 | tig0024677:-57151 | Msa1419190:CDS |
| GGAAGTTCAAGCCAAGTGGC+AGG | 0.540366 | tig0024677:-60394 | Msa1419190:CDS |
| AGGAAATTAATGATTTATTG+GGG | 0.540538 | tig0024677:-58629 | Msa1419190:CDS |
| CCAAACTAGTGGGCCACTCT+CGG | 0.543416 | tig0024677:-61952 | Msa1419190:intron |
| AGGAGGCTCACAATCATCCT+TGG | 0.544300 | tig0024677:+58060 | None:intergenic |
| TTCTCCACTAGAAGGTTGCA+TGG | 0.545017 | tig0024677:+60958 | None:intergenic |
| GTTGGTGATGGTGATGGTGA+GGG | 0.545120 | tig0024677:-61755 | Msa1419190:CDS |
| GAAGGCTATACCAAAGAAGA+AGG | 0.545383 | tig0024677:-58917 | Msa1419190:CDS |
| ATTACCAGCTGCAGAGGTGA+TGG | 0.546186 | tig0024677:-63906 | Msa1419190:intron |
| TAAAGAGATGGCAGCAATGG+AGG | 0.548073 | tig0024677:-57630 | Msa1419190:CDS |
| GTCATCTTCTTCCAAGTCGT+CGG | 0.550197 | tig0024677:+57140 | None:intergenic |
| TAGTAAAGAGATGGCAGCAA+TGG | 0.550552 | tig0024677:-57633 | Msa1419190:CDS |
| TCAGATTGACTCATCAATGC+TGG | 0.550681 | tig0024677:-57075 | Msa1419190:exon |
| TTTATCCTGTAGGTAAATCA+CGG | 0.551659 | tig0024677:-57282 | Msa1419190:intron |
| TCTTACTTACACTAATTGGA+AGG | 0.551758 | tig0024677:-58935 | Msa1419190:CDS |
| AAAGGAGGCACGCGACTTGG+AGG | 0.552533 | tig0024677:-63718 | Msa1419190:CDS |
| TTAATCCAACGAACTGAGAC+CGG | 0.557213 | tig0024677:+59918 | None:intergenic |
| ATTAACTATGAAAATGATGA+TGG | 0.557967 | tig0024677:-61728 | Msa1419190:CDS |
| AACCTACCACTTGAAGTTGA+GGG | 0.558153 | tig0024677:-59791 | Msa1419190:CDS |
| AATGAAGAAGGGGAGCCCAT+TGG | 0.560442 | tig0024677:-59030 | Msa1419190:CDS |
| CTTCTGGTATGTTGTCTGGA+CGG | 0.561123 | tig0024677:+58660 | None:intergenic |
| CAAAAGGACCTTGTCGATCG+TGG | 0.562659 | tig0024677:-61890 | Msa1419190:CDS |
| AAATCACCTTAAATGAAGAA+GGG | 0.563337 | tig0024677:-59041 | Msa1419190:CDS |
| AAACAACAATCATTGACAGC+TGG | 0.563591 | tig0024677:-62981 | Msa1419190:CDS |
| CGGCCCATGCAACCTTCTAG+TGG | 0.563950 | tig0024677:-60962 | Msa1419190:CDS |
| CGGCCCATGCCACCTTGTAG+TGG | 0.564484 | tig0024677:-63410 | Msa1419190:CDS |
| TAACCTACCACTTGAAGTTG+AGG | 0.568282 | tig0024677:-59792 | Msa1419190:CDS |
| TGTTGGTGATGGTGATGGTG+AGG | 0.568841 | tig0024677:-61756 | Msa1419190:CDS |
| AAACGACATCGTTATCGAGT+TGG | 0.573943 | tig0024677:+56901 | None:intergenic |
| AGTATGACAACTTGCGTGAG+CGG | 0.575926 | tig0024677:-58691 | Msa1419190:CDS |
| AAGTGATAATGGTGATGTTG+AGG | 0.576279 | tig0024677:-59753 | Msa1419190:CDS |
| TAAGCAACAACTTGAAGTTG+AGG | 0.580484 | tig0024677:-61801 | Msa1419190:CDS |
| ACCAATGACAATCCAATGGA+AGG | 0.580607 | tig0024677:-59695 | Msa1419190:intron |
| ATAAACTATGAAAATGATGA+TGG | 0.581271 | tig0024677:-59725 | Msa1419190:CDS |
| ATATTCCAGAAAGTATAAAG+TGG | 0.583110 | tig0024677:-60762 | Msa1419190:CDS |
| CAGTTCTGCTCAATTTCAAG+AGG | 0.584026 | tig0024677:-59891 | Msa1419190:CDS |
| ACTAATGACACTCCAATGAA+AGG | 0.584851 | tig0024677:-61698 | Msa1419190:intron |
| AAAGTAAATAAGGGAAAAGG+AGG | 0.587085 | tig0024677:-63733 | Msa1419190:CDS |
| ATCAACCATGAAAATGATGT+TGG | 0.588199 | tig0024677:-61773 | Msa1419190:CDS |
| GAAAACCAATGACAATCCAA+TGG | 0.589221 | tig0024677:-59699 | Msa1419190:CDS |
| CATGTTAATGTGAACAATGA+TGG | 0.596679 | tig0024677:-63652 | Msa1419190:intron |
| AATTCAGAAAACAACGATGA+GGG | 0.597970 | tig0024677:-60482 | Msa1419190:CDS |
| ATATCACCCTCAACTTCAAG+TGG | 0.599635 | tig0024677:+59785 | None:intergenic |
| ATCCACCACCTAACCGAGAG+TGG | 0.601174 | tig0024677:+61939 | None:intergenic |
| AATCACCTTAAATGAAGAAG+GGG | 0.602115 | tig0024677:-59040 | Msa1419190:CDS |
| CATGAAAATGATGTTGGTGA+TGG | 0.604334 | tig0024677:-61767 | Msa1419190:CDS |
| AAAGTTCTAGTTTAAATCAG+GGG | 0.604848 | tig0024677:-63103 | Msa1419190:CDS |
| TAATAAATGATGCTTGGAGA+CGG | 0.606235 | tig0024677:-58748 | Msa1419190:CDS |
| AATGATGTTGGTGATGGTGA+TGG | 0.607681 | tig0024677:-61761 | Msa1419190:CDS |
| AAGGTGTTGTAACTCTTCCA+TGG | 0.608703 | tig0024677:+57777 | None:intergenic |
| ATGAATGTAGCCCATTATTG+TGG | 0.611135 | tig0024677:+57513 | None:intergenic |
| GTGGGCCACTCTCGGTTAGG+TGG | 0.613865 | tig0024677:-61944 | Msa1419190:CDS |
| TGACTACTATAGACTCTGCT+GGG | 0.622977 | tig0024677:-63031 | Msa1419190:CDS |
| TGACAAGATTCAAGAAATGG+AGG | 0.626506 | tig0024677:-57684 | Msa1419190:CDS |
| CCCAAAGATGATGTTTACAT+CGG | 0.630117 | tig0024677:-63446 | Msa1419190:CDS |
| GCAATTCAGACCAAGATATG+GGG | 0.632072 | tig0024677:-57568 | Msa1419190:CDS |
| CATTCATCTACATCTGCCCA+TGG | 0.633478 | tig0024677:-57497 | Msa1419190:CDS |
| CTTGAGAATGGATCGACTAG+CGG | 0.634905 | tig0024677:+60642 | None:intergenic |
| ACTTACGGTTCTCCACTACA+AGG | 0.637620 | tig0024677:+63398 | None:intergenic |
| TATGCTCGAGAATTCATGAT+CGG | 0.640321 | tig0024677:-59083 | Msa1419190:CDS |
| CCATGGCCTAAATAATGATG+AGG | 0.641883 | tig0024677:-57480 | Msa1419190:intron |
| CACCCTCAACTTCAAGTGGT+AGG | 0.642167 | tig0024677:+59789 | None:intergenic |
| AGCTGGAAGTTCAAGCCAAG+TGG | 0.642871 | tig0024677:-60398 | Msa1419190:CDS |
| TCTCCACTAGAAGGTTGCAT+GGG | 0.644391 | tig0024677:+60959 | None:intergenic |
| ACCTGGAAGTTCAATCCAAG+TGG | 0.651682 | tig0024677:-62814 | Msa1419190:CDS |
| AAATGATCAAGTGACACTGA+GGG | 0.652066 | tig0024677:+61833 | None:intergenic |
| ATACAACAATCATTGACACC+TGG | 0.652106 | tig0024677:-62831 | Msa1419190:CDS |
| GGAGGTAAAACATGAAACGA+TGG | 0.653175 | tig0024677:-57666 | Msa1419190:CDS |
| TGGAAGGTCCATGATCAACA+AGG | 0.654556 | tig0024677:+59867 | None:intergenic |
| GCCAGATTGTTGAATCACAA+AGG | 0.661508 | tig0024677:-56823 | Msa1419190:three_prime_UTR |
| CAATTCAGACCAAGATATGG+GGG | 0.664719 | tig0024677:-57567 | Msa1419190:CDS |
| CCATTCTCATGCATGACCTG+AGG | 0.667212 | tig0024677:-60438 | Msa1419190:CDS |
| AAATTCAGAAAACAACGATG+AGG | 0.669446 | tig0024677:-60483 | Msa1419190:CDS |
| AAAATGATCAAGTGACACTG+AGG | 0.669992 | tig0024677:+61832 | None:intergenic |
| CTATGTGTAGCGTGCAACCA+AGG | 0.673476 | tig0024677:-58077 | Msa1419190:intron |
| AAGAGATGGCAGCAATGGAG+GGG | 0.675148 | tig0024677:-57628 | Msa1419190:CDS |
| CCATTCTCATGCATGAACAA+CGG | 0.678870 | tig0024677:-60534 | Msa1419190:CDS |
| TGAGAATGGATCGACTAGCG+GGG | 0.689452 | tig0024677:+60644 | None:intergenic |
| AGCAGAATATTGCAACACAA+CGG | 0.691187 | tig0024677:+63936 | None:intergenic |
| CCATTCTAAAGAATGACCAA+AGG | 0.692103 | tig0024677:-62854 | Msa1419190:CDS |
| TTGATCATGGACCTTCCAAG+AGG | 0.695593 | tig0024677:-59862 | Msa1419190:CDS |
| TGAATGATCCACGATCGACA+AGG | 0.696041 | tig0024677:+61882 | None:intergenic |
| TTTGGTTCTTGATAGAGACG+AGG | 0.701174 | tig0024677:-61024 | Msa1419190:intron |
| TACGGTTCTCCACTACAAGG+TGG | 0.728989 | tig0024677:+63401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTTTTTTTTTTG+AGG | - | tig0024677:57367-57386 | Msa1419190:intron | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTGA+GGG | - | tig0024677:57368-57387 | Msa1419190:intron | 10.0% |
| !!! | CTTTATTTTTTGTTTTTTTT+TGG | - | tig0024677:59606-59625 | Msa1419190:intron | 10.0% |
| !! | AAATACATATATTAAATCAC+CGG | + | tig0024677:57083-57102 | None:intergenic | 15.0% |
| !!! | TTATACTTTTCAATTGATAA+AGG | - | tig0024677:57434-57453 | Msa1419190:intron | 15.0% |
| !! | TAAATAAATAGAATGAACAA+AGG | + | tig0024677:61124-61143 | None:intergenic | 15.0% |
| !! | TTAGGAAATTAATGATTTAT+TGG | - | tig0024677:62017-62036 | Msa1419190:intron | 15.0% |
| !! | TAGGAAATTAATGATTTATT+GGG | - | tig0024677:62018-62037 | Msa1419190:intron | 15.0% |
| !! | TTAAATTTATCTTACTTGAA+CGG | + | tig0024677:62053-62072 | None:intergenic | 15.0% |
| !! | GTTAAATTCTATTAAAAGTT+TGG | - | tig0024677:62267-62286 | Msa1419190:intron | 15.0% |
| !! | TATCACAATGAAAGTAAATA+AGG | - | tig0024677:56905-56924 | Msa1419190:three_prime_UTR | 20.0% |
| !! | ATCACAATGAAAGTAAATAA+GGG | - | tig0024677:56906-56925 | Msa1419190:three_prime_UTR | 20.0% |
| !! | AAAACTGAATTATCAAAAGA+AGG | - | tig0024677:57308-57327 | Msa1419190:intron | 20.0% |
| !! | AAAACATAATGTGTTCTAAT+AGG | + | tig0024677:57355-57374 | None:intergenic | 20.0% |
| !! | GAAAGGAGTAATAAAAATAA+TGG | + | tig0024677:57937-57956 | None:intergenic | 20.0% |
| !! | TATTACAATTTACCATACAA+TGG | - | tig0024677:58340-58359 | Msa1419190:intron | 20.0% |
| !! | ATTAACTATGAAAATGATGA+TGG | - | tig0024677:58920-58939 | Msa1419190:CDS | 20.0% |
| !! | GAAACAAAATGAATATACAA+AGG | + | tig0024677:59123-59142 | None:intergenic | 20.0% |
| !! | TAATTCATATATGAAATCAG+AGG | - | tig0024677:59288-59307 | Msa1419190:intron | 20.0% |
| !! | AGAAAGTTAATCAATAACTA+TGG | + | tig0024677:59454-59473 | None:intergenic | 20.0% |
| !!! | AGACAAAACTTCTTTTAAAA+GGG | - | tig0024677:59524-59543 | Msa1419190:intron | 20.0% |
| !!! | TTATACTTTTCAATTGAGAA+AGG | - | tig0024677:59856-59875 | Msa1419190:CDS | 20.0% |
| !!! | TTTCACTTGTTTTATGTTTT+AGG | - | tig0024677:60613-60632 | Msa1419190:CDS | 20.0% |
| !!! | TTCACTTGTTTTATGTTTTA+GGG | - | tig0024677:60614-60633 | Msa1419190:CDS | 20.0% |
| !! | ATAAACTATGAAAATGATGA+TGG | - | tig0024677:60923-60942 | Msa1419190:intron | 20.0% |
| !!! | ATTCTTTCTGTTTAAGTTAT+TGG | - | tig0024677:61172-61191 | Msa1419190:intron | 20.0% |
| !!! | CATATATAACTTGTTGATAT+TGG | - | tig0024677:61488-61507 | Msa1419190:intron | 20.0% |
| !! | AGGAAATTAATGATTTATTG+GGG | - | tig0024677:62019-62038 | Msa1419190:intron | 20.0% |
| !!! | TTTTTACTACTATTAGTGAA+TGG | - | tig0024677:62245-62264 | Msa1419190:intron | 20.0% |
| !! | ATTTAATTATTCGTCATTCA+GGG | + | tig0024677:62504-62523 | None:intergenic | 20.0% |
| !! | AATTTAATTATTCGTCATTC+AGG | + | tig0024677:62505-62524 | None:intergenic | 20.0% |
| !! | TTGAAAAGAAGTAAAGAAAT+TGG | - | tig0024677:62899-62918 | Msa1419190:CDS | 20.0% |
| ! | AAGTAACGAGTAAAAGAAAA+AGG | + | tig0024677:56780-56799 | None:intergenic | 25.0% |
| ! | ATGAAAGTAAATAAGGGAAA+AGG | - | tig0024677:56912-56931 | Msa1419190:three_prime_UTR | 25.0% |
| !!! | GAAATGAAAGTTTGTTTTTC+CGG | - | tig0024677:57061-57080 | Msa1419190:three_prime_UTR | 25.0% |
| ! | GAGATAAATGTATATACTAG+AGG | + | tig0024677:57138-57157 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTCAGTTTTGC+AGG | + | tig0024677:57306-57325 | None:intergenic | 25.0% |
| !!! | CAAAGTTCTAGTTTAAATCA+GGG | - | tig0024677:57544-57563 | Msa1419190:CDS | 25.0% |
| !!! | AAAGTTCTAGTTTAAATCAG+GGG | - | tig0024677:57545-57564 | Msa1419190:CDS | 25.0% |
| ! | AACATAAAAAACAAGATCAC+AGG | - | tig0024677:57875-57894 | Msa1419190:CDS | 25.0% |
| ! | AGATTGAGATACTATAAGTT+AGG | - | tig0024677:58034-58053 | Msa1419190:CDS | 25.0% |
| ! | ACATAAAGTCAATAATAGAG+TGG | + | tig0024677:58104-58123 | None:intergenic | 25.0% |
| ! | TGAAATAGCAGTAATAACAA+TGG | + | tig0024677:58185-58204 | None:intergenic | 25.0% |
| ! | GTATGGTAAATTGTAATAGT+TGG | + | tig0024677:58338-58357 | None:intergenic | 25.0% |
| !!! | TGTCACTTGATCATTTTAAA+AGG | - | tig0024677:58822-58841 | Msa1419190:intron | 25.0% |
| ! | TGAAACATAGTTAACTAGTA+GGG | + | tig0024677:58982-59001 | None:intergenic | 25.0% |
| ! | ATGAAACATAGTTAACTAGT+AGG | + | tig0024677:58983-59002 | None:intergenic | 25.0% |
| ! | TATCATATGTATATCATCAG+TGG | + | tig0024677:59034-59053 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTACATTCAGTT+AGG | - | tig0024677:59239-59258 | Msa1419190:intron | 25.0% |
| !! | GAGACAAAACTTCTTTTAAA+AGG | - | tig0024677:59523-59542 | Msa1419190:intron | 25.0% |
| !!! | GACAAAACTTCTTTTAAAAG+GGG | - | tig0024677:59525-59544 | Msa1419190:intron | 25.0% |
| !!! | ACAAAACTTCTTTTAAAAGG+GGG | - | tig0024677:59526-59545 | Msa1419190:intron | 25.0% |
| ! | AATGTATATAGTAGATGACA+AGG | + | tig0024677:59567-59586 | None:intergenic | 25.0% |
| ! | AAAATAAAGAATTTGAGCTG+TGG | + | tig0024677:59595-59614 | None:intergenic | 25.0% |
| !!! | GTTCAATTTCTTGTTGTTTA+AGG | - | tig0024677:59719-59738 | Msa1419190:CDS | 25.0% |
| !! | TGAGTTGAATTATCAAAAGA+AGG | - | tig0024677:59766-59785 | Msa1419190:CDS | 25.0% |
| !! | ATATTCCAGAAAGTATAAAG+TGG | - | tig0024677:59886-59905 | Msa1419190:CDS | 25.0% |
| !!! | ATAAAGTGGATGTTTTTGAA+AGG | - | tig0024677:59900-59919 | Msa1419190:CDS | 25.0% |
| ! | AACCAAAAAATCAGAAAACA+AGG | - | tig0024677:59967-59986 | Msa1419190:intron | 25.0% |
| !!! | ATCCTTGTTTTCTGATTTTT+TGG | + | tig0024677:59972-59991 | None:intergenic | 25.0% |
| !! | AATTTTTGCTTGGTTTAAAG+TGG | + | tig0024677:60150-60169 | None:intergenic | 25.0% |
| !! | TTGTTTTCTGAATTTTTGCT+TGG | + | tig0024677:60160-60179 | None:intergenic | 25.0% |
| ! | AATAAAGGACAAGTAATGAT+TGG | + | tig0024677:60339-60358 | None:intergenic | 25.0% |
| ! | GAAAGGAGCAAATATAATAA+AGG | + | tig0024677:60354-60373 | None:intergenic | 25.0% |
| ! | TGTTGAAAAATCAAACTAGT+GGG | - | tig0024677:60707-60726 | Msa1419190:CDS | 25.0% |
| !! | ATTAACTCTGAAAGTGATAA+TGG | - | tig0024677:60884-60903 | Msa1419190:intron | 25.0% |
| !! | TTTCTGTTTAAGTTATTGGT+TGG | - | tig0024677:61176-61195 | Msa1419190:intron | 25.0% |
| ! | TTTCATTTGTACTTTCAGTT+AGG | - | tig0024677:61220-61239 | Msa1419190:intron | 25.0% |
| ! | TTCATTTGTACTTTCAGTTA+GGG | - | tig0024677:61221-61240 | Msa1419190:intron | 25.0% |
| ! | GATAGCATAAGAGATATTTA+AGG | + | tig0024677:61395-61414 | None:intergenic | 25.0% |
| ! | TTGATATTGGAATGTATACT+AGG | - | tig0024677:61501-61520 | Msa1419190:intron | 25.0% |
| ! | TAGGAGAAACATCAAAAAAA+AGG | - | tig0024677:61520-61539 | Msa1419190:intron | 25.0% |
| ! | ACATCAAAAAAAAGGAAAAG+AGG | - | tig0024677:61528-61547 | Msa1419190:intron | 25.0% |
| ! | AAATCACCTTAAATGAAGAA+GGG | - | tig0024677:61607-61626 | Msa1419190:intron | 25.0% |
| !!! | TTCTGAATTCAGCAATTTTT+TGG | - | tig0024677:61659-61678 | Msa1419190:intron | 25.0% |
| !!! | TCTGAATTCAGCAATTTTTT+GGG | - | tig0024677:61660-61679 | Msa1419190:intron | 25.0% |
| ! | AAAGAAGAAGGAGAATATAT+GGG | - | tig0024677:61743-61762 | Msa1419190:CDS | 25.0% |
| ! | ATGCTATAATAAATGATGCT+TGG | - | tig0024677:61894-61913 | Msa1419190:CDS | 25.0% |
| ! | AAATATGAACACTTGTAGAA+TGG | - | tig0024677:62371-62390 | Msa1419190:intron | 25.0% |
| ! | AAAACTTACAATTGTGTTAC+TGG | + | tig0024677:62678-62697 | None:intergenic | 25.0% |
| !! | TAAAAAAAAGCATGCTATTG+AGG | - | tig0024677:62928-62947 | Msa1419190:CDS | 25.0% |
| ! | GAAAAAACATAGTAAAGAGA+TGG | - | tig0024677:63006-63025 | Msa1419190:CDS | 25.0% |
| ! | AACATACCTCATCATTATTT+AGG | + | tig0024677:63177-63196 | None:intergenic | 25.0% |
| ! | TTCATTACCATAAGGAATAT+TGG | - | tig0024677:63228-63247 | Msa1419190:intron | 25.0% |
| ! | TTATTAGTAGCTAAAATACG+AGG | - | tig0024677:63297-63316 | Msa1419190:intron | 25.0% |
| !!! | TCTTAGTATTTTTATCCTGT+AGG | - | tig0024677:63356-63375 | Msa1419190:intron | 25.0% |
| ! | GATTCTATTATCAACCTATA+AGG | + | tig0024677:63637-63656 | None:intergenic | 25.0% |
| ! | TAAAAGAGAAGCTAATATCA+TGG | - | tig0024677:63703-63722 | Msa1419190:CDS | 25.0% |
| !!! | TAATATCATGGTGTGTTTTT+TGG | - | tig0024677:63715-63734 | Msa1419190:CDS | 25.0% |
| AAAGTAAATAAGGGAAAAGG+AGG | - | tig0024677:56915-56934 | Msa1419190:three_prime_UTR | 30.0% | |
| CATGTTAATGTGAACAATGA+TGG | - | tig0024677:56996-57015 | Msa1419190:three_prime_UTR | 30.0% | |
| GAACCAAGAAATGAAACTTA+CGG | + | tig0024677:57268-57287 | None:intergenic | 30.0% | |
| TAAGTTTCATTTCTTGGTTC+AGG | - | tig0024677:57268-57287 | Msa1419190:CDS | 30.0% | |
| ATGTGTTCTAATAGGTGAAA+AGG | + | tig0024677:57347-57366 | None:intergenic | 30.0% | |
| !!! | ATTTTGATTCAATTCAGCAG+AGG | + | tig0024677:57488-57507 | None:intergenic | 30.0% |
| !! | GCAAAGTTCTAGTTTAAATC+AGG | - | tig0024677:57543-57562 | Msa1419190:CDS | 30.0% |
| TCAATGATTGTTGTATCCTT+TGG | + | tig0024677:57813-57832 | None:intergenic | 30.0% | |
| ATGGACAAGTATGATTGAAA+AGG | + | tig0024677:57918-57937 | None:intergenic | 30.0% | |
| ATGAAGATTACAGTGATGAA+AGG | + | tig0024677:57954-57973 | None:intergenic | 30.0% | |
| AAAGTCAATAATAGAGTGGT+GGG | + | tig0024677:58100-58119 | None:intergenic | 30.0% | |
| TAAAGTCAATAATAGAGTGG+TGG | + | tig0024677:58101-58120 | None:intergenic | 30.0% | |
| TTATAGATTGCCAAACATAG+TGG | + | tig0024677:58135-58154 | None:intergenic | 30.0% | |
| !! | CTGCTATTTCAACTGTAAAA+TGG | - | tig0024677:58194-58213 | Msa1419190:intron | 30.0% |
| ! | CTCCAGGATTAGTATAAATA+GGG | - | tig0024677:58218-58237 | Msa1419190:intron | 30.0% |
| ! | AATTGTAATAGTTGGCTCAA+AGG | + | tig0024677:58330-58349 | None:intergenic | 30.0% |
| ! | TTTCCCCATACTTTATGTTT+TGG | - | tig0024677:58604-58623 | Msa1419190:intron | 30.0% |
| ! | TTCCCCATACTTTATGTTTT+GGG | - | tig0024677:58605-58624 | Msa1419190:intron | 30.0% |
| TACCCCAAAACATAAAGTAT+GGG | + | tig0024677:58611-58630 | None:intergenic | 30.0% | |
| ATACCCCAAAACATAAAGTA+TGG | + | tig0024677:58612-58631 | None:intergenic | 30.0% | |
| TGTTGAAAAACCAAACTAGT+GGG | - | tig0024677:58686-58705 | Msa1419190:CDS | 30.0% | |
| ATCAACCATGAAAATGATGT+TGG | - | tig0024677:58875-58894 | Msa1419190:intron | 30.0% | |
| GAAACATAGTTAACTAGTAG+GGG | + | tig0024677:58981-59000 | None:intergenic | 30.0% | |
| ATAGCACTATAGTAACAGAA+GGG | + | tig0024677:59068-59087 | None:intergenic | 30.0% | |
| ACTCTTTCTGTTTCAGTTAT+TGG | - | tig0024677:59191-59210 | Msa1419190:intron | 30.0% | |
| ! | ATATGTGTAGTAACTTGCAT+AGG | - | tig0024677:59488-59507 | Msa1419190:intron | 30.0% |
| ! | TATGTGTAGTAACTTGCATA+GGG | - | tig0024677:59489-59508 | Msa1419190:intron | 30.0% |
| ACTAATGTAAACATCAGCTT+TGG | + | tig0024677:59654-59673 | None:intergenic | 30.0% | |
| ACATTAGTTCACAACTCAAA+CGG | - | tig0024677:59666-59685 | Msa1419190:intron | 30.0% | |
| AACATCCACTTTATACTTTC+TGG | + | tig0024677:59894-59913 | None:intergenic | 30.0% | |
| !!! | AAAGGATCTTTTTCAAAGCA+AGG | - | tig0024677:59918-59937 | Msa1419190:CDS | 30.0% |
| !!! | AAGGATCTTTTTCAAAGCAA+GGG | - | tig0024677:59919-59938 | Msa1419190:CDS | 30.0% |
| !!! | ATTTTTTGGTTGCTTTGAAG+TGG | + | tig0024677:59958-59977 | None:intergenic | 30.0% |
| AAATTCAGAAAACAACGATG+AGG | - | tig0024677:60165-60184 | Msa1419190:intron | 30.0% | |
| AATTCAGAAAACAACGATGA+GGG | - | tig0024677:60166-60185 | Msa1419190:intron | 30.0% | |
| AACATAAAAAGCAAGATCAC+AGG | - | tig0024677:60291-60310 | Msa1419190:intron | 30.0% | |
| TGTTAGTTAGTGCAACAAAA+TGG | + | tig0024677:60509-60528 | None:intergenic | 30.0% | |
| GTGTTGAAAAATCAAACTAG+TGG | - | tig0024677:60706-60725 | Msa1419190:CDS | 30.0% | |
| TAATCATCAAGTGACATTGA+TGG | + | tig0024677:60824-60843 | None:intergenic | 30.0% | |
| TGAAACATAGTTGAGTAGTA+GGG | + | tig0024677:60985-61004 | None:intergenic | 30.0% | |
| ATGAAACATAGTTGAGTAGT+AGG | + | tig0024677:60986-61005 | None:intergenic | 30.0% | |
| CATATCATATGTGTCATATG+TGG | + | tig0024677:61037-61056 | None:intergenic | 30.0% | |
| CAGAAAGAATGAACAACAAA+GGG | + | tig0024677:61162-61181 | None:intergenic | 30.0% | |
| ACAGAAAGAATGAACAACAA+AGG | + | tig0024677:61163-61182 | None:intergenic | 30.0% | |
| ACCAACTGAATGATACAAAT+GGG | + | tig0024677:61284-61303 | None:intergenic | 30.0% | |
| AACCAACTGAATGATACAAA+TGG | + | tig0024677:61285-61304 | None:intergenic | 30.0% | |
| ! | TTTTTCTGCTATCAATCAGT+TGG | - | tig0024677:61364-61383 | Msa1419190:intron | 30.0% |
| AAAAAAAGGAAAAGAGGAAG+AGG | - | tig0024677:61534-61553 | Msa1419190:intron | 30.0% | |
| GAAATCACCTTAAATGAAGA+AGG | - | tig0024677:61606-61625 | Msa1419190:intron | 30.0% | |
| AATCACCTTAAATGAAGAAG+GGG | - | tig0024677:61608-61627 | Msa1419190:intron | 30.0% | |
| !! | TCAGAAACTATCTTTTGAGT+TGG | + | tig0024677:61645-61664 | None:intergenic | 30.0% |
| TTCCAATTAGTGTAAGTAAG+AGG | + | tig0024677:61714-61733 | None:intergenic | 30.0% | |
| TCTTACTTACACTAATTGGA+AGG | - | tig0024677:61713-61732 | Msa1419190:CDS | 30.0% | |
| CATATATTCTCCTTCTTCTT+TGG | + | tig0024677:61744-61763 | None:intergenic | 30.0% | |
| CAAAGAAGAAGGAGAATATA+TGG | - | tig0024677:61742-61761 | Msa1419190:CDS | 30.0% | |
| AGATACATTGTTCCTGAAAA+AGG | - | tig0024677:61857-61876 | Msa1419190:CDS | 30.0% | |
| TAATAAATGATGCTTGGAGA+CGG | - | tig0024677:61900-61919 | Msa1419190:CDS | 30.0% | |
| ! | CATTGATGATTTCAGGAAAT+TGG | - | tig0024677:62129-62148 | Msa1419190:intron | 30.0% |
| CTTATGATAGCAAAGCTTAT+GGG | + | tig0024677:62207-62226 | None:intergenic | 30.0% | |
| ! | CATAAGCTTTGCTATCATAA+GGG | - | tig0024677:62206-62225 | Msa1419190:intron | 30.0% |
| TTTCATAAAGTCCATTCAGT+GGG | + | tig0024677:62353-62372 | None:intergenic | 30.0% | |
| ! | TTTTCATAAAGTCCATTCAG+TGG | + | tig0024677:62354-62373 | None:intergenic | 30.0% |
| !! | TTCTGATTTTGGTGAAGAAA+TGG | - | tig0024677:62423-62442 | Msa1419190:intron | 30.0% |
| !! | ATTTTGGTGAAGAAATGGAT+GGG | - | tig0024677:62428-62447 | Msa1419190:intron | 30.0% |
| GATTTAAGTGCCAATAATAC+TGG | + | tig0024677:62460-62479 | None:intergenic | 30.0% | |
| GTGATGATTTCTACTACTAT+TGG | - | tig0024677:62534-62553 | Msa1419190:intron | 30.0% | |
| ATAAAAACTTCAGCTTGAGT+AGG | + | tig0024677:62611-62630 | None:intergenic | 30.0% | |
| CAAGATTTGATCGTAAATTC+TGG | - | tig0024677:62785-62804 | Msa1419190:CDS | 30.0% | |
| TTTCTTTACCGAAGATAGTT+CGG | + | tig0024677:62832-62851 | None:intergenic | 30.0% | |
| !! | TTACTTCTTTTCAAGAGAGA+AGG | + | tig0024677:62893-62912 | None:intergenic | 30.0% |
| AAGTGACAAGATTCAAGAAA+TGG | - | tig0024677:62961-62980 | Msa1419190:CDS | 30.0% | |
| CCATTATTGTTGCAACTATA+AGG | + | tig0024677:63202-63221 | None:intergenic | 30.0% | |
| CCTTATAGTTGCAACAATAA+TGG | - | tig0024677:63199-63218 | Msa1419190:intron | 30.0% | |
| ! | TTCCTTATGGTAATGAATGT+AGG | + | tig0024677:63225-63244 | None:intergenic | 30.0% |
| !!! | AATGTTTTAGCTCTCAATGA+GGG | + | tig0024677:63257-63276 | None:intergenic | 30.0% |
| !!! | TAATGTTTTAGCTCTCAATG+AGG | + | tig0024677:63258-63277 | None:intergenic | 30.0% |
| TTTATCCTGTAGGTAAATCA+CGG | - | tig0024677:63366-63385 | Msa1419190:intron | 30.0% | |
| TCATTTCCAAAGTCATCAAA+AGG | + | tig0024677:63477-63496 | None:intergenic | 30.0% | |
| GATAAGAACACAAACCTTAT+AGG | - | tig0024677:63620-63639 | Msa1419190:intron | 30.0% | |
| ! | TACATCGAGCTTCTTTTTAT+AGG | - | tig0024677:63663-63682 | Msa1419190:CDS | 30.0% |
| ! | TTGAATCACAAAGGTGATTT+TGG | - | tig0024677:63834-63853 | Msa1419190:intron | 30.0% |
| AGCAGAATATTGCAACACAA+CGG | + | tig0024677:56715-56734 | None:intergenic | 35.0% | |
| ACACACATACATTACACTCT+GGG | + | tig0024677:56851-56870 | None:intergenic | 35.0% | |
| TACACACATACATTACACTC+TGG | + | tig0024677:56852-56871 | None:intergenic | 35.0% | |
| !! | TTGCATTTGTGTTGATTTGC+AGG | - | tig0024677:56872-56891 | Msa1419190:three_prime_UTR | 35.0% |
| CCGATGTAAACATCATCTTT+GGG | + | tig0024677:57205-57224 | None:intergenic | 35.0% | |
| CCCAAAGATGATGTTTACAT+CGG | - | tig0024677:57202-57221 | Msa1419190:CDS | 35.0% | |
| ACCGATGTAAACATCATCTT+TGG | + | tig0024677:57206-57225 | None:intergenic | 35.0% | |
| GAACCGTAAGTTTCATTTCT+TGG | - | tig0024677:57262-57281 | Msa1419190:CDS | 35.0% | |
| !! | TTCTAGTTTAAATCAGGGGA+TGG | - | tig0024677:57549-57568 | Msa1419190:CDS | 35.0% |
| AAACAACAATCATTGACAGC+TGG | - | tig0024677:57667-57686 | Msa1419190:CDS | 35.0% | |
| ! | CCTTTGGTCATTCTTTAGAA+TGG | + | tig0024677:57797-57816 | None:intergenic | 35.0% |
| ! | CCATTCTAAAGAATGACCAA+AGG | - | tig0024677:57794-57813 | Msa1419190:CDS | 35.0% |
| ATACAACAATCATTGACACC+TGG | - | tig0024677:57817-57836 | Msa1419190:CDS | 35.0% | |
| ! | AAAAGGCATGTTTGAAAACC+TGG | + | tig0024677:57901-57920 | None:intergenic | 35.0% |
| CACTGTAATCTTCATTTGTG+AGG | - | tig0024677:57959-57978 | Msa1419190:intron | 35.0% | |
| AGCAACCAAAAACATCACAA+AGG | + | tig0024677:57985-58004 | None:intergenic | 35.0% | |
| !!! | TGTTTTTGGTTGCTACATTC+TGG | - | tig0024677:57991-58010 | Msa1419190:CDS | 35.0% |
| CCTATTTATACTAATCCTGG+AGG | + | tig0024677:58220-58239 | None:intergenic | 35.0% | |
| ! | CCTCCAGGATTAGTATAAAT+AGG | - | tig0024677:58217-58236 | Msa1419190:intron | 35.0% |
| GTCCCTATTTATACTAATCC+TGG | + | tig0024677:58223-58242 | None:intergenic | 35.0% | |
| !! | TTGAACTTGTTAGTTAGTGC+AGG | + | tig0024677:58431-58450 | None:intergenic | 35.0% |
| ATGGAGGAAGTTTGTGTAAT+AGG | - | tig0024677:58526-58545 | Msa1419190:intron | 35.0% | |
| AGCATGAACAGTAAGTCAAT+AGG | + | tig0024677:58582-58601 | None:intergenic | 35.0% | |
| ! | TCCCCATACTTTATGTTTTG+GGG | - | tig0024677:58606-58625 | Msa1419190:intron | 35.0% |
| ACCCCAAAACATAAAGTATG+GGG | + | tig0024677:58610-58629 | None:intergenic | 35.0% | |
| GTAAGTCAGTAGCATAACAT+GGG | + | tig0024677:58640-58659 | None:intergenic | 35.0% | |
| AGTAAGTCAGTAGCATAACA+TGG | + | tig0024677:58641-58660 | None:intergenic | 35.0% | |
| GTGTTGAAAAACCAAACTAG+TGG | - | tig0024677:58685-58704 | Msa1419190:CDS | 35.0% | |
| TTCTTCTGCTCAATTCCAAA+AGG | - | tig0024677:58742-58761 | Msa1419190:CDS | 35.0% | |
| AAATGATCAAGTGACACTGA+GGG | + | tig0024677:58818-58837 | None:intergenic | 35.0% | |
| AAAATGATCAAGTGACACTG+AGG | + | tig0024677:58819-58838 | None:intergenic | 35.0% | |
| TAAGCAACAACTTGAAGTTG+AGG | - | tig0024677:58847-58866 | Msa1419190:intron | 35.0% | |
| ! | CATCACCAACATCATTTTCA+TGG | + | tig0024677:58883-58902 | None:intergenic | 35.0% |
| ! | CATGAAAATGATGTTGGTGA+TGG | - | tig0024677:58881-58900 | Msa1419190:intron | 35.0% |
| ACTAATGACACTCCAATGAA+AGG | - | tig0024677:58950-58969 | Msa1419190:CDS | 35.0% | |
| CATAGCACTATAGTAACAGA+AGG | + | tig0024677:59069-59088 | None:intergenic | 35.0% | |
| CTTCTGTTACTATAGTGCTA+TGG | - | tig0024677:59067-59086 | Msa1419190:CDS | 35.0% | |
| !!! | CTTCCTTGTTTCTACTGTTT+TGG | - | tig0024677:59094-59113 | Msa1419190:CDS | 35.0% |
| ACCTACTGAATGATGCAAAA+GGG | + | tig0024677:59268-59287 | None:intergenic | 35.0% | |
| AACCTACTGAATGATGCAAA+AGG | + | tig0024677:59269-59288 | None:intergenic | 35.0% | |
| TTCAGAATCATCTGTATACG+TGG | - | tig0024677:59316-59335 | Msa1419190:intron | 35.0% | |
| CAGCAGTATATAGCAGAAAA+AGG | + | tig0024677:59346-59365 | None:intergenic | 35.0% | |
| ACTGCTGTGTATCATTCAAT+TGG | - | tig0024677:59359-59378 | Msa1419190:intron | 35.0% | |
| !!! | TACACGGTCATTTTTTGCTT+CGG | + | tig0024677:59409-59428 | None:intergenic | 35.0% |
| ! | ATGTGTAGTAACTTGCATAG+GGG | - | tig0024677:59490-59509 | Msa1419190:intron | 35.0% |
| TGATAATTCAACTCAGCCAA+TGG | + | tig0024677:59761-59780 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTCAAAGCAAGGGA+TGG | - | tig0024677:59923-59942 | Msa1419190:CDS | 35.0% |
| !!! | ATTTTTTGCTTGCTGTGAAG+TGG | + | tig0024677:60054-60073 | None:intergenic | 35.0% |
| !! | TCAAAGATTGTTGTTTCCTC+AGG | + | tig0024677:60229-60248 | None:intergenic | 35.0% |
| AAACAACAATCTTTGACAGC+TGG | - | tig0024677:60233-60252 | Msa1419190:intron | 35.0% | |
| TAATGATTGGCAAAGCATGT+TGG | + | tig0024677:60326-60345 | None:intergenic | 35.0% | |
| ATGAAGATTGCAGTGATGAA+AGG | + | tig0024677:60371-60390 | None:intergenic | 35.0% | |
| AAAAAAGTAGCAGCCAACAA+TGG | + | tig0024677:60402-60421 | None:intergenic | 35.0% | |
| GTTGAGTACTATTACTACCA+TGG | - | tig0024677:60425-60444 | Msa1419190:CDS | 35.0% | |
| GTTAGTGCAACAAAATGGTT+AGG | + | tig0024677:60504-60523 | None:intergenic | 35.0% | |
| !! | AAGTGATAATGGTGATGTTG+AGG | - | tig0024677:60895-60914 | Msa1419190:intron | 35.0% |
| !! | AGTGATAATGGTGATGTTGA+GGG | - | tig0024677:60896-60915 | Msa1419190:intron | 35.0% |
| GAAAACCAATGACAATCCAA+TGG | - | tig0024677:60949-60968 | Msa1419190:intron | 35.0% | |
| GAAACATAGTTGAGTAGTAG+GGG | + | tig0024677:60984-61003 | None:intergenic | 35.0% | |
| ATCATATGTGTCATATGTGG+TGG | + | tig0024677:61034-61053 | None:intergenic | 35.0% | |
| !!! | CTCCTTGTTTTTGAATGCTT+TGG | - | tig0024677:61095-61114 | Msa1419190:intron | 35.0% |
| ! | CACCAAAGCATTCAAAAACA+AGG | + | tig0024677:61100-61119 | None:intergenic | 35.0% |
| !!! | CTTGTTTTTGAATGCTTTGG+TGG | - | tig0024677:61098-61117 | Msa1419190:intron | 35.0% |
| GGTTCCTCTTATCTATATTG+AGG | - | tig0024677:61255-61274 | Msa1419190:intron | 35.0% | |
| GCTACCTCAATATAGATAAG+AGG | + | tig0024677:61262-61281 | None:intergenic | 35.0% | |
| TATTCAGAATCATCTGCGTA+CGG | - | tig0024677:61330-61349 | Msa1419190:intron | 35.0% | |
| TATGCTCGAGAATTCATGAT+CGG | - | tig0024677:61565-61584 | Msa1419190:intron | 35.0% | |
| ATTTCTTCTCTTTCAGCAAG+TGG | + | tig0024677:61591-61610 | None:intergenic | 35.0% | |
| !!! | ATCTTTTGAGTTGGACCAAT+GGG | + | tig0024677:61636-61655 | None:intergenic | 35.0% |
| !!! | TATCTTTTGAGTTGGACCAA+TGG | + | tig0024677:61637-61656 | None:intergenic | 35.0% |
| !!! | ATTTTTTGGGATCAGTAGCA+AGG | - | tig0024677:61673-61692 | Msa1419190:intron | 35.0% |
| GTCCTCTTACTTACACTAAT+TGG | - | tig0024677:61709-61728 | Msa1419190:CDS | 35.0% | |
| AATTTCCTAAAGTCTGCTTC+TGG | + | tig0024677:62007-62026 | None:intergenic | 35.0% | |
| ! | TGACTCTCATTGATGATTTC+AGG | - | tig0024677:62122-62141 | Msa1419190:intron | 35.0% |
| ACAAAAATGTAGACATCGAG+CGG | - | tig0024677:62179-62198 | Msa1419190:intron | 35.0% | |
| CCTTATGATAGCAAAGCTTA+TGG | + | tig0024677:62208-62227 | None:intergenic | 35.0% | |
| ! | CCATAAGCTTTGCTATCATA+AGG | - | tig0024677:62205-62224 | Msa1419190:intron | 35.0% |
| TGCTATCATAAGGGAAAAAC+TGG | - | tig0024677:62215-62234 | Msa1419190:intron | 35.0% | |
| !! | GATTTTGGTGAAGAAATGGA+TGG | - | tig0024677:62427-62446 | Msa1419190:intron | 35.0% |
| GAAACACGACAAAGTAAGAA+AGG | - | tig0024677:62632-62651 | Msa1419190:intron | 35.0% | |
| ! | CAATTGTGTTACTGGTAACT+TGG | + | tig0024677:62670-62689 | None:intergenic | 35.0% |
| ATCTTCGGTAAAGAAAAACC+TGG | - | tig0024677:62836-62855 | Msa1419190:CDS | 35.0% | |
| TGACAAGATTCAAGAAATGG+AGG | - | tig0024677:62964-62983 | Msa1419190:CDS | 35.0% | |
| GGAAATTGCAAGTTCTTCTA+AGG | - | tig0024677:63041-63060 | Msa1419190:CDS | 35.0% | |
| TATCTTGGTCTGAATTGCTT+TGG | + | tig0024677:63078-63097 | None:intergenic | 35.0% | |
| AAGCAATTCAGACCAAGATA+TGG | - | tig0024677:63078-63097 | Msa1419190:CDS | 35.0% | |
| AGCAATTCAGACCAAGATAT+GGG | - | tig0024677:63079-63098 | Msa1419190:CDS | 35.0% | |
| ATGAATGTAGCCCATTATTG+TGG | + | tig0024677:63138-63157 | None:intergenic | 35.0% | |
| CTCATCATTATTTAGGCCAT+GGG | + | tig0024677:63170-63189 | None:intergenic | 35.0% | |
| CATCAGACAATTGTTCTTCA+AGG | + | tig0024677:63392-63411 | None:intergenic | 35.0% | |
| !! | AGAACAACCTTTTGATGACT+TGG | - | tig0024677:63431-63450 | Msa1419190:CDS | 35.0% |
| TCATCTTCCAAGTCATCAAA+AGG | + | tig0024677:63441-63460 | None:intergenic | 35.0% | |
| ! | AAGACCAATCTTTTCATGAC+TGG | - | tig0024677:63532-63551 | Msa1419190:intron | 35.0% |
| ! | AGACCAATCTTTTCATGACT+GGG | - | tig0024677:63533-63552 | Msa1419190:intron | 35.0% |
| ACCTTTGTGATTCAACAATC+TGG | + | tig0024677:63829-63848 | None:intergenic | 35.0% | |
| !!! | ACAAAGGTGATTTTGGAGTT+TGG | - | tig0024677:63841-63860 | Msa1419190:intron | 35.0% |
| !! | TTACACTCTGGGATTTCTCT+TGG | + | tig0024677:56840-56859 | None:intergenic | 40.0% |
| AAGAAAGAGAGAAACAGTGG+TGG | + | tig0024677:57113-57132 | None:intergenic | 40.0% | |
| ! | ACCACTGTTTCTCTCTTTCT+TGG | - | tig0024677:57112-57131 | Msa1419190:CDS | 40.0% |
| ATGACTACTATAGACTCTGC+TGG | - | tig0024677:57616-57635 | Msa1419190:CDS | 40.0% | |
| TGACTACTATAGACTCTGCT+GGG | - | tig0024677:57617-57636 | Msa1419190:CDS | 40.0% | |
| CGTTTGATCATGCTTGAGAA+TGG | + | tig0024677:57647-57666 | None:intergenic | 40.0% | |
| AAAAAACAAGATCACAGGCC+AGG | - | tig0024677:57880-57899 | Msa1419190:intron | 40.0% | |
| ! | TGAGGCCTTTGTGATGTTTT+TGG | - | tig0024677:57977-57996 | Msa1419190:intron | 40.0% |
| ! | TCAATAATAGAGTGGTGGGA+TGG | + | tig0024677:58096-58115 | None:intergenic | 40.0% |
| GTCAATCAAGCCACTATGTT+TGG | - | tig0024677:58122-58141 | Msa1419190:intron | 40.0% | |
| !!! | CCAGGTTTTGAACCATTGTA+TGG | + | tig0024677:58355-58374 | None:intergenic | 40.0% |
| CCATACAATGGTTCAAAACC+TGG | - | tig0024677:58352-58371 | Msa1419190:intron | 40.0% | |
| AAAAGCCTAGTCCAAGTCAT+AGG | + | tig0024677:58378-58397 | None:intergenic | 40.0% | |
| GTTAGTGCAGGAAGAAAGAT+GGG | + | tig0024677:58419-58438 | None:intergenic | 40.0% | |
| AGTTAGTGCAGGAAGAAAGA+TGG | + | tig0024677:58420-58439 | None:intergenic | 40.0% | |
| ! | AGAGAGTGCACGTTTGAAAA+TGG | - | tig0024677:58507-58526 | Msa1419190:CDS | 40.0% |
| !! | AATGATGTTGGTGATGGTGA+TGG | - | tig0024677:58887-58906 | Msa1419190:intron | 40.0% |
| CCACCAAAACAGTAGAAACA+AGG | + | tig0024677:59100-59119 | None:intergenic | 40.0% | |
| !!! | CCTTGTTTCTACTGTTTTGG+TGG | - | tig0024677:59097-59116 | Msa1419190:CDS | 40.0% |
| CAGAAAGAGTGAACAGCAAA+GGG | + | tig0024677:59181-59200 | None:intergenic | 40.0% | |
| ACAGAAAGAGTGAACAGCAA+AGG | + | tig0024677:59182-59201 | None:intergenic | 40.0% | |
| !! | TTTGGTTCTTGATAGAGACG+AGG | - | tig0024677:59624-59643 | Msa1419190:intron | 40.0% |
| ACTTACAGTTCTCCACTAGA+AGG | + | tig0024677:59701-59720 | None:intergenic | 40.0% | |
| CTGTTGATCATGCTTGAGAA+TGG | + | tig0024677:60021-60040 | None:intergenic | 40.0% | |
| CCATTCTCATGCATGAACAA+CGG | - | tig0024677:60114-60133 | Msa1419190:intron | 40.0% | |
| CACTGCAATCTTCATTTGTG+AGG | - | tig0024677:60376-60395 | Msa1419190:CDS | 40.0% | |
| TTCATTTGTGAGGCCATTGT+TGG | - | tig0024677:60386-60405 | Msa1419190:CDS | 40.0% | |
| TACTACCATGGTTCAAAACC+TGG | - | tig0024677:60437-60456 | Msa1419190:CDS | 40.0% | |
| ! | GAAAAATCAAACTAGTGGGC+CGG | - | tig0024677:60711-60730 | Msa1419190:CDS | 40.0% |
| TTAATCCAACGAACTGAGAC+CGG | + | tig0024677:60733-60752 | None:intergenic | 40.0% | |
| CAGTTCTGCTCAATTTCAAG+AGG | - | tig0024677:60757-60776 | Msa1419190:CDS | 40.0% | |
| ! | AACTTCTTTTGCCTCTTGGA+AGG | + | tig0024677:60800-60819 | None:intergenic | 40.0% |
| ! | TGGTAACTTCTTTTGCCTCT+TGG | + | tig0024677:60804-60823 | None:intergenic | 40.0% |
| TAACCTACCACTTGAAGTTG+AGG | - | tig0024677:60856-60875 | Msa1419190:intron | 40.0% | |
| AACCTACCACTTGAAGTTGA+GGG | - | tig0024677:60857-60876 | Msa1419190:intron | 40.0% | |
| ATATCACCCTCAACTTCAAG+TGG | + | tig0024677:60866-60885 | None:intergenic | 40.0% | |
| ACCAATGACAATCCAATGGA+AGG | - | tig0024677:60953-60972 | Msa1419190:intron | 40.0% | |
| ACCTTCCATTGGATTGTCAT+TGG | + | tig0024677:60957-60976 | None:intergenic | 40.0% | |
| ! | ATGTGGTGGTGATGATGAAA+TGG | + | tig0024677:61020-61039 | None:intergenic | 40.0% |
| ! | CTTTTGTTACTACAGTGCTC+TGG | - | tig0024677:61068-61087 | Msa1419190:intron | 40.0% |
| !! | GTTATTGGTTGGCTTTCTGT+TGG | - | tig0024677:61187-61206 | Msa1419190:intron | 40.0% |
| TTCAGTTAGGGTCCTATTGT+TGG | - | tig0024677:61233-61252 | Msa1419190:intron | 40.0% | |
| TCAGTTAGGGTCCTATTGTT+GGG | - | tig0024677:61234-61253 | Msa1419190:intron | 40.0% | |
| GATAAGAGGAACCCAACAAT+AGG | + | tig0024677:61248-61267 | None:intergenic | 40.0% | |
| GCCCATTTGTATCATTCAGT+TGG | - | tig0024677:61280-61299 | Msa1419190:intron | 40.0% | |
| GAAGGCTATACCAAAGAAGA+AGG | - | tig0024677:61731-61750 | Msa1419190:CDS | 40.0% | |
| TGTTCCTGAAAAAGGAGAGA+AGG | - | tig0024677:61865-61884 | Msa1419190:CDS | 40.0% | |
| ACATACCAGAAGCAGACTTT+AGG | - | tig0024677:61999-62018 | Msa1419190:intron | 40.0% | |
| CAAAAATGTAGACATCGAGC+GGG | - | tig0024677:62180-62199 | Msa1419190:intron | 40.0% | |
| !!! | ACTACTGATTTTTTGCCACC+CGG | - | tig0024677:62292-62311 | Msa1419190:intron | 40.0% |
| TGGGACTAAAATCCAAGCTT+CGG | + | tig0024677:62334-62353 | None:intergenic | 40.0% | |
| !! | TGGATTTTAGTCCCACTGAA+TGG | - | tig0024677:62339-62358 | Msa1419190:intron | 40.0% |
| ! | CTAGGGGAACATTCTGATTT+TGG | - | tig0024677:62412-62431 | Msa1419190:intron | 40.0% |
| TGGGATGACTCCAGTATTAT+TGG | - | tig0024677:62447-62466 | Msa1419190:intron | 40.0% | |
| AAAACTTCAGCTTGAGTAGG+AGG | + | tig0024677:62608-62627 | None:intergenic | 40.0% | |
| CGTAAATTCTGGTCAGTCTT+CGG | - | tig0024677:62796-62815 | Msa1419190:CDS | 40.0% | |
| ! | GAAGCATTCCGAACTATCTT+CGG | - | tig0024677:62821-62840 | Msa1419190:CDS | 40.0% |
| !! | AAGGTGTTGTAACTCTTCCA+TGG | + | tig0024677:62874-62893 | None:intergenic | 40.0% |
| GGAGGTAAAACATGAAACGA+TGG | - | tig0024677:62982-63001 | Msa1419190:CDS | 40.0% | |
| TAGTAAAGAGATGGCAGCAA+TGG | - | tig0024677:63015-63034 | Msa1419190:CDS | 40.0% | |
| GCAATTCAGACCAAGATATG+GGG | - | tig0024677:63080-63099 | Msa1419190:CDS | 40.0% | |
| CAATTCAGACCAAGATATGG+GGG | - | tig0024677:63081-63100 | Msa1419190:CDS | 40.0% | |
| ACCCCAAATGACCACAATAA+TGG | - | tig0024677:63124-63143 | Msa1419190:CDS | 40.0% | |
| CCCATTATTGTGGTCATTTG+GGG | + | tig0024677:63128-63147 | None:intergenic | 40.0% | |
| CCCCAAATGACCACAATAAT+GGG | - | tig0024677:63125-63144 | Msa1419190:CDS | 40.0% | |
| GCCCATTATTGTGGTCATTT+GGG | + | tig0024677:63129-63148 | None:intergenic | 40.0% | |
| AGCCCATTATTGTGGTCATT+TGG | + | tig0024677:63130-63149 | None:intergenic | 40.0% | |
| CCTCATCATTATTTAGGCCA+TGG | + | tig0024677:63171-63190 | None:intergenic | 40.0% | |
| CCATGGCCTAAATAATGATG+AGG | - | tig0024677:63168-63187 | Msa1419190:CDS | 40.0% | |
| GGCCTACATTCATTACCATA+AGG | - | tig0024677:63220-63239 | Msa1419190:intron | 40.0% | |
| AGGGTGACCAATATTCCTTA+TGG | + | tig0024677:63238-63257 | None:intergenic | 40.0% | |
| !! | GAGCAACCTTTTGATGACTT+TGG | - | tig0024677:63468-63487 | Msa1419190:intron | 40.0% |
| CTTCCCAGTCATGAAAAGAT+TGG | + | tig0024677:63539-63558 | None:intergenic | 40.0% | |
| ! | TCAGATTGACTCATCAATGC+TGG | - | tig0024677:63573-63592 | Msa1419190:intron | 40.0% |
| AAACGACATCGTTATCGAGT+TGG | + | tig0024677:63750-63769 | None:intergenic | 40.0% | |
| AACTCGATAACGATGTCGTT+TGG | - | tig0024677:63749-63768 | Msa1419190:CDS | 40.0% | |
| GCCAGATTGTTGAATCACAA+AGG | - | tig0024677:63825-63844 | Msa1419190:intron | 40.0% | |
| CGTAATATTACCAGCTGCAG+AGG | - | tig0024677:56736-56755 | Msa1419190:three_prime_UTR | 45.0% | |
| GCCAAGAAAGAGAGAAACAG+TGG | + | tig0024677:57116-57135 | None:intergenic | 45.0% | |
| ACATCGGTGCACAACTCAAA+CGG | - | tig0024677:57218-57237 | Msa1419190:CDS | 45.0% | |
| ACTTACGGTTCTCCACTACA+AGG | + | tig0024677:57253-57272 | None:intergenic | 45.0% | |
| GCAGAGGACTTTGTAATGTC+TGG | + | tig0024677:57472-57491 | None:intergenic | 45.0% | |
| GGAAGATCAATCCAAGTTGC+AGG | - | tig0024677:57688-57707 | Msa1419190:CDS | 45.0% | |
| TTTGAGCAGATCCTGCAACT+TGG | + | tig0024677:57702-57721 | None:intergenic | 45.0% | |
| ACCTGGAAGTTCAATCCAAG+TGG | - | tig0024677:57834-57853 | Msa1419190:CDS | 45.0% | |
| ATGGAGAAGCTAGCATGGTA+TGG | + | tig0024677:58077-58096 | None:intergenic | 45.0% | |
| TCAACTGTAAAATGGCCTCC+AGG | - | tig0024677:58202-58221 | Msa1419190:intron | 45.0% | |
| CTCATTTGAGAGCTAGAGAG+TGG | - | tig0024677:58292-58311 | Msa1419190:intron | 45.0% | |
| ! | CTAGAGAGTGGATTCTCTCT+TGG | - | tig0024677:58304-58323 | Msa1419190:intron | 45.0% |
| TCAAAACCTGGCCTATGACT+TGG | - | tig0024677:58364-58383 | Msa1419190:intron | 45.0% | |
| GAGTGCACGTTTGAAAATGG+AGG | - | tig0024677:58510-58529 | Msa1419190:intron | 45.0% | |
| TGAATGATCCACGATCGACA+AGG | + | tig0024677:58769-58788 | None:intergenic | 45.0% | |
| AGTGACACTGAGGGAATCTT+TGG | + | tig0024677:58809-58828 | None:intergenic | 45.0% | |
| !! | GTAGGGGTGTTACCTTTCAT+TGG | + | tig0024677:58965-58984 | None:intergenic | 45.0% |
| ! | GCCCTTTTGCATCATTCAGT+AGG | - | tig0024677:59264-59283 | Msa1419190:intron | 45.0% |
| GCAGACACATCGTTTGTACA+CGG | + | tig0024677:59425-59444 | None:intergenic | 45.0% | |
| TCTCCACTAGAAGGTTGCAT+GGG | + | tig0024677:59692-59711 | None:intergenic | 45.0% | |
| TTCTCCACTAGAAGGTTGCA+TGG | + | tig0024677:59693-59712 | None:intergenic | 45.0% | |
| AATTCAACTCAGCCAATGGC+TGG | + | tig0024677:59757-59776 | None:intergenic | 45.0% | |
| TTGAGAATGGATCGACTAGC+GGG | + | tig0024677:60008-60027 | None:intergenic | 45.0% | |
| CTTGAGAATGGATCGACTAG+CGG | + | tig0024677:60009-60028 | None:intergenic | 45.0% | |
| CCGTTGTTCATGCATGAGAA+TGG | + | tig0024677:60117-60136 | None:intergenic | 45.0% | |
| AAAAAGCAAGATCACAGGCC+AGG | - | tig0024677:60296-60315 | Msa1419190:intron | 45.0% | |
| GCAAAGCATGTTGGAAAACC+TGG | + | tig0024677:60317-60336 | None:intergenic | 45.0% | |
| !!! | ACATGCCAGGTTTTGAACCA+TGG | + | tig0024677:60445-60464 | None:intergenic | 45.0% |
| TGTAGTCAAAGTCACATGCC+AGG | + | tig0024677:60458-60477 | None:intergenic | 45.0% | |
| CAAGAGGACCTTGTTGATCA+TGG | - | tig0024677:60773-60792 | Msa1419190:CDS | 45.0% | |
| TGGAAGGTCCATGATCAACA+AGG | + | tig0024677:60784-60803 | None:intergenic | 45.0% | |
| TTGATCATGGACCTTCCAAG+AGG | - | tig0024677:60786-60805 | Msa1419190:intron | 45.0% | |
| GCAGACACATCGTTTGTACA+TGG | + | tig0024677:59425-59444 | None:intergenic | 45.0% | |
| ! | ACAGCCTTCTCTCCTTTTTC+AGG | + | tig0024677:61872-61891 | None:intergenic | 45.0% |
| AGTATGACAACTTGCGTGAG+CGG | - | tig0024677:61957-61976 | Msa1419190:intron | 45.0% | |
| CTTCTGGTATGTTGTCTGGA+CGG | + | tig0024677:61991-62010 | None:intergenic | 45.0% | |
| TCTGCTTCTGGTATGTTGTC+TGG | + | tig0024677:61995-62014 | None:intergenic | 45.0% | |
| !!! | CTACTGATTTTTTGCCACCC+GGG | - | tig0024677:62293-62312 | Msa1419190:intron | 45.0% |
| !!! | TACTGATTTTTTGCCACCCG+GGG | - | tig0024677:62294-62313 | Msa1419190:intron | 45.0% |
| CAGAATGTTCCCCTAGTAGT+TGG | + | tig0024677:62408-62427 | None:intergenic | 45.0% | |
| TAAAGAGATGGCAGCAATGG+AGG | - | tig0024677:63018-63037 | Msa1419190:CDS | 45.0% | |
| AAAGAGATGGCAGCAATGGA+GGG | - | tig0024677:63019-63038 | Msa1419190:CDS | 45.0% | |
| AGACCAAGATATGGGGGATT+TGG | - | tig0024677:63087-63106 | Msa1419190:CDS | 45.0% | |
| CATTCATCTACATCTGCCCA+TGG | - | tig0024677:63151-63170 | Msa1419190:CDS | 45.0% | |
| AGAACAACATACCGACGACT+TGG | - | tig0024677:63497-63516 | Msa1419190:intron | 45.0% | |
| GTCATCTTCTTCCAAGTCGT+CGG | + | tig0024677:63511-63530 | None:intergenic | 45.0% | |
| ATTACCAGCTGCAGAGGTGA+TGG | - | tig0024677:56742-56761 | Msa1419190:three_prime_UTR | 50.0% | |
| ATTACCATCACCTCTGCAGC+TGG | + | tig0024677:56749-56768 | None:intergenic | 50.0% | |
| TCTCCACTACAAGGTGGCAT+GGG | + | tig0024677:57244-57263 | None:intergenic | 50.0% | |
| TTCTCCACTACAAGGTGGCA+TGG | + | tig0024677:57245-57264 | None:intergenic | 50.0% | |
| TACGGTTCTCCACTACAAGG+TGG | + | tig0024677:57250-57269 | None:intergenic | 50.0% | |
| GCCACTTGGATTGAACTTCC+AGG | + | tig0024677:57838-57857 | None:intergenic | 50.0% | |
| GGAAGTTCAATCCAAGTGGC+AGG | - | tig0024677:57838-57857 | Msa1419190:CDS | 50.0% | |
| !! | CATGGTATGGTGGTGGCAAA+TGG | + | tig0024677:58064-58083 | None:intergenic | 50.0% |
| AAGCTAGCATGGTATGGTGG+TGG | + | tig0024677:58071-58090 | None:intergenic | 50.0% | |
| GAGAAGCTAGCATGGTATGG+TGG | + | tig0024677:58074-58093 | None:intergenic | 50.0% | |
| ! | CACGATCGACAAGGTCCTTT+TGG | + | tig0024677:58760-58779 | None:intergenic | 50.0% |
| CAAAAGGACCTTGTCGATCG+TGG | - | tig0024677:58758-58777 | Msa1419190:CDS | 50.0% | |
| !! | TGTTGGTGATGGTGATGGTG+AGG | - | tig0024677:58892-58911 | Msa1419190:intron | 50.0% |
| !! | GTTGGTGATGGTGATGGTGA+GGG | - | tig0024677:58893-58912 | Msa1419190:intron | 50.0% |
| AACACTGTTGCTCCAGCCAT+TGG | - | tig0024677:59742-59761 | Msa1419190:CDS | 50.0% | |
| TGAGAATGGATCGACTAGCG+GGG | + | tig0024677:60007-60026 | None:intergenic | 50.0% | |
| CCTCAGGTCATGCATGAGAA+TGG | + | tig0024677:60213-60232 | None:intergenic | 50.0% | |
| CCATTCTCATGCATGACCTG+AGG | - | tig0024677:60210-60229 | Msa1419190:intron | 50.0% | |
| AGCTGGAAGTTCAAGCCAAG+TGG | - | tig0024677:60250-60269 | Msa1419190:intron | 50.0% | |
| TTTGAGCAGATCCTGCCACT+TGG | + | tig0024677:60268-60287 | None:intergenic | 50.0% | |
| CACCCTCAACTTCAAGTGGT+AGG | + | tig0024677:60862-60881 | None:intergenic | 50.0% | |
| !! | GTAGGGGTGTTACCTTCCAT+TGG | + | tig0024677:60968-60987 | None:intergenic | 50.0% |
| GGGCTCCCCTTCTTCATTTA+AGG | + | tig0024677:61616-61635 | None:intergenic | 50.0% | |
| AATGAAGAAGGGGAGCCCAT+TGG | - | tig0024677:61618-61637 | Msa1419190:intron | 50.0% | |
| AGCTTCACAAGACCGAAGCT+TGG | - | tig0024677:62319-62338 | Msa1419190:intron | 50.0% | |
| AACCACCAGCTCCAACTACT+AGG | - | tig0024677:62394-62413 | Msa1419190:intron | 50.0% | |
| ACCACCAGCTCCAACTACTA+GGG | - | tig0024677:62395-62414 | Msa1419190:intron | 50.0% | |
| GCAAGCTTCACTGAGGTTGT+TGG | + | tig0024677:62482-62501 | None:intergenic | 50.0% | |
| ATTCAGGGCAAGCTTCACTG+AGG | + | tig0024677:62489-62508 | None:intergenic | 50.0% | |
| CTATGTGTAGCGTGCAACCA+AGG | - | tig0024677:62571-62590 | Msa1419190:intron | 50.0% | |
| AGGAGGCTCACAATCATCCT+TGG | + | tig0024677:62591-62610 | None:intergenic | 50.0% | |
| AAGAGATGGCAGCAATGGAG+GGG | - | tig0024677:63020-63039 | Msa1419190:CDS | 50.0% | |
| CTGCCAAATCCCCCATATCT+TGG | + | tig0024677:63093-63112 | None:intergenic | 50.0% | |
| CAAGGCCGTGATTTACCTAC+AGG | + | tig0024677:63374-63393 | None:intergenic | 50.0% | |
| TTTGCGCAGATCCTGCCACT+TGG | + | tig0024677:57852-57871 | None:intergenic | 55.0% | |
| GTGGGATGGAGAAGCTAGCA+TGG | + | tig0024677:58082-58101 | None:intergenic | 55.0% | |
| CCTAGTCCAAGTCATAGGCC+AGG | + | tig0024677:58373-58392 | None:intergenic | 55.0% | |
| ! | CCTGGCCTATGACTTGGACT+AGG | - | tig0024677:58370-58389 | Msa1419190:intron | 55.0% |
| ! | CCAAACTAGTGGGCCACTCT+CGG | - | tig0024677:58696-58715 | Msa1419190:CDS | 55.0% |
| ATCCACCACCTAACCGAGAG+TGG | + | tig0024677:58712-58731 | None:intergenic | 55.0% | |
| GGAAGTTCAAGCCAAGTGGC+AGG | - | tig0024677:60254-60273 | Msa1419190:intron | 55.0% | |
| CCACCAGCTCCAACTACTAG+GGG | - | tig0024677:62396-62415 | Msa1419190:intron | 55.0% | |
| GTTCCCCTAGTAGTTGGAGC+TGG | + | tig0024677:62402-62421 | None:intergenic | 55.0% | |
| ! | GGAAAAGGAGGCACGCGACT+TGG | - | tig0024677:56927-56946 | Msa1419190:three_prime_UTR | 60.0% |
| ! | AAAGGAGGCACGCGACTTGG+AGG | - | tig0024677:56930-56949 | Msa1419190:three_prime_UTR | 60.0% |
| CCGAGAGTGGCCCACTAGTT+TGG | + | tig0024677:58699-58718 | None:intergenic | 60.0% | |
| ! | CTAGTGGGCCACTCTCGGTT+AGG | - | tig0024677:58701-58720 | Msa1419190:CDS | 60.0% |
| CGGCCCATGCAACCTTCTAG+TGG | - | tig0024677:59686-59705 | Msa1419190:intron | 60.0% | |
| ! | GGTCTTGTGAAGCTTGCCCC+GGG | + | tig0024677:62313-62332 | None:intergenic | 60.0% |
| ! | CGGTCTTGTGAAGCTTGCCC+CGG | + | tig0024677:62314-62333 | None:intergenic | 60.0% |
| CCCCTAGTAGTTGGAGCTGG+TGG | + | tig0024677:62399-62418 | None:intergenic | 60.0% | |
| CGGCCCATGCCACCTTGTAG+TGG | - | tig0024677:57238-57257 | Msa1419190:CDS | 65.0% | |
| GTGGGCCACTCTCGGTTAGG+TGG | - | tig0024677:58704-58723 | Msa1419190:CDS | 65.0% | |
| GGCCACTCTCGGTTAGGTGG+TGG | - | tig0024677:58707-58726 | Msa1419190:CDS | 65.0% | |
| GTGGGCCGGTCTCAGTTCGT+TGG | - | tig0024677:60725-60744 | Msa1419190:CDS | 65.0% | |
| CTTGTGAAGCTTGCCCCGGG+TGG | + | tig0024677:62310-62329 | None:intergenic | 65.0% | |
| CCATGGCAGCGCACTCTTCC+AGG | + | tig0024677:62857-62876 | None:intergenic | 65.0% | |
| ! | CCTGGAAGAGTGCGCTGCCA+TGG | - | tig0024677:62854-62873 | Msa1419190:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024677 | gene | 56707 | 63963 | 56707 | ID=Msa1419190;Name=Msa1419190 |
| tig0024677 | mRNA | 56707 | 63963 | 56707 | ID=Msa1419190-mRNA-1;Parent=Msa1419190;Name=Msa1419190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.92|0.78|0.92|1|1|14|382|1003 |
| tig0024677 | exon | 56707 | 57292 | 56707 | ID=Msa1419190-mRNA-1:exon:795;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 57481 | 57894 | 57481 | ID=Msa1419190-mRNA-1:exon:794;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 57982 | 58089 | 57982 | ID=Msa1419190-mRNA-1:exon:793;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 58434 | 58526 | 58434 | ID=Msa1419190-mRNA-1:exon:792;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 58613 | 58816 | 58613 | ID=Msa1419190-mRNA-1:exon:791;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 58894 | 59147 | 58894 | ID=Msa1419190-mRNA-1:exon:790;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 59696 | 59944 | 59696 | ID=Msa1419190-mRNA-1:exon:789;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 60353 | 60792 | 60353 | ID=Msa1419190-mRNA-1:exon:788;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 60956 | 61031 | 60956 | ID=Msa1419190-mRNA-1:exon:787;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 61699 | 61965 | 61699 | ID=Msa1419190-mRNA-1:exon:786;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 62769 | 63214 | 62769 | ID=Msa1419190-mRNA-1:exon:785;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 63404 | 63479 | 63404 | ID=Msa1419190-mRNA-1:exon:784;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 63653 | 63776 | 63653 | ID=Msa1419190-mRNA-1:exon:783;Parent=Msa1419190-mRNA-1 |
| tig0024677 | exon | 63907 | 63963 | 63907 | ID=Msa1419190-mRNA-1:exon:782;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 63907 | 63963 | 63907 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 63653 | 63776 | 63653 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 63404 | 63479 | 63404 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 62769 | 63214 | 62769 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 61699 | 61965 | 61699 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 60956 | 61031 | 60956 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 60353 | 60792 | 60353 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 59696 | 59944 | 59696 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 58894 | 59147 | 58894 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 58613 | 58816 | 58613 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 58434 | 58526 | 58434 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 57982 | 58089 | 57982 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 57481 | 57894 | 57481 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | CDS | 57089 | 57292 | 57089 | ID=Msa1419190-mRNA-1:cds;Parent=Msa1419190-mRNA-1 |
| tig0024677 | three_prime_UTR | 56707 | 57088 | 56707 | ID=Msa1419190-mRNA-1:three_prime_utr;Parent=Msa1419190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
