Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420850 | sp|Q8L719|THO4B_ARATH | 50.000 | 74 | 29 | 1 | 4 | 69 | 118 | 191 | 1.85e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420850 | G7KWS7 | 94.545 | 55 | 3 | 0 | 15 | 69 | 39 | 93 | 6.42e-28 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0202960 | Msa1420850 | 0.900042 | 1.088283e-77 | -8.615850e-47 |
| Msa0284410 | Msa1420850 | 0.850533 | 1.597354e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420850 | MtrunA17_Chr7g0223041 | 64.773 | 88 | 28 | 1 | 15 | 102 | 104 | 188 | 2.30e-27 | 103 |
| Msa1420850 | MtrunA17_Chr4g0031081 | 38.144 | 97 | 52 | 1 | 4 | 92 | 104 | 200 | 1.64e-16 | 73.6 |
| Msa1420850 | MtrunA17_Chr3g0110401 | 36.047 | 86 | 47 | 1 | 1 | 78 | 36 | 121 | 6.85e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420850 | AT5G02530.2 | 50.000 | 74 | 29 | 1 | 4 | 69 | 118 | 191 | 1.63e-17 | 77.0 |
| Msa1420850 | AT5G02530.1 | 50.000 | 74 | 29 | 1 | 4 | 69 | 118 | 191 | 1.88e-17 | 76.6 |
| Msa1420850 | AT5G59950.2 | 43.750 | 80 | 36 | 2 | 4 | 74 | 32 | 111 | 1.23e-15 | 70.1 |
| Msa1420850 | AT5G59950.4 | 43.750 | 80 | 36 | 2 | 4 | 74 | 98 | 177 | 2.10e-15 | 70.1 |
| Msa1420850 | AT5G59950.5 | 43.750 | 80 | 36 | 2 | 4 | 74 | 98 | 177 | 2.89e-15 | 70.5 |
| Msa1420850 | AT5G59950.3 | 43.750 | 80 | 36 | 2 | 4 | 74 | 96 | 175 | 2.89e-15 | 70.1 |
| Msa1420850 | AT5G59950.1 | 43.750 | 80 | 36 | 2 | 4 | 74 | 98 | 177 | 3.06e-15 | 70.1 |
Find 184 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCATCTGGTTCGTATTC+TGG | 0.050300 | tig0024875:-24897 | Msa1420850:five_prime_UTR |
| AAATTCTTTATCCGGGTTTC+TGG | 0.114080 | tig0024875:-24420 | Msa1420850:five_prime_UTR |
| TCAGACTTGGTTACCAAATT+TGG | 0.149170 | tig0024875:-21211 | Msa1420850:intron |
| ACTTATAATGCGATGATTAA+TGG | 0.195435 | tig0024875:-23623 | Msa1420850:five_prime_UTR |
| AGTTATAATGTTATGATTAA+TGG | 0.206496 | tig0024875:-23728 | Msa1420850:five_prime_UTR |
| ACAGGGGCTTGAACCAAATT+TGG | 0.208304 | tig0024875:+21198 | None:intergenic |
| TTAATAGATGGAATCAAATT+AGG | 0.211510 | tig0024875:-24088 | Msa1420850:five_prime_UTR |
| CCGAATTGCTTCCAAGCTTT+TGG | 0.236972 | tig0024875:-22961 | Msa1420850:five_prime_UTR |
| TAACTCTATTCTTGATTGTT+TGG | 0.239488 | tig0024875:-23093 | Msa1420850:five_prime_UTR |
| TGCAACCAAATGAAGCTTTA+TGG | 0.245030 | tig0024875:-21437 | Msa1420850:CDS |
| CGGTTTCGGCTTTGGCGATT+TGG | 0.249754 | tig0024875:+24113 | None:intergenic |
| CGTTATACGTAAACTTCTTA+TGG | 0.257242 | tig0024875:+24484 | None:intergenic |
| TATTAAAACGGTTTCGGCTT+TGG | 0.258489 | tig0024875:+24105 | None:intergenic |
| AAGTGAAATGCAGTATAAAT+TGG | 0.282707 | tig0024875:+24249 | None:intergenic |
| AAGATGGCTTTAAGATCTTA+AGG | 0.294821 | tig0024875:-22926 | Msa1420850:five_prime_UTR |
| TGACTTGCACATTGTGGATA+TGG | 0.299360 | tig0024875:+24138 | None:intergenic |
| AACTCTATTCTTGATTGTTT+GGG | 0.302813 | tig0024875:-23092 | Msa1420850:five_prime_UTR |
| TCATGCTGCACAACCTTTGC+AGG | 0.303361 | tig0024875:-22995 | Msa1420850:five_prime_UTR |
| TACATGAACACGTTGGGTTT+TGG | 0.317243 | tig0024875:-23134 | Msa1420850:five_prime_UTR |
| ATCCATCTGGTTCGTATTCT+GGG | 0.321353 | tig0024875:-24896 | Msa1420850:five_prime_UTR |
| GAAAACTTCTGCTGTTCCTT+TGG | 0.326079 | tig0024875:+21499 | None:intergenic |
| AAATGCTTCAATCAGGAATA+AGG | 0.333272 | tig0024875:-23871 | Msa1420850:five_prime_UTR |
| TCCATCTATTAAAACGGTTT+CGG | 0.333443 | tig0024875:+24099 | None:intergenic |
| GTTCAAGCCCCTGTCAAGTT+TGG | 0.334517 | tig0024875:-21189 | Msa1420850:CDS |
| AAGTTGCTTTGTTGAACTTC+GGG | 0.341550 | tig0024875:-22793 | Msa1420850:five_prime_UTR |
| TTGACCTACAAACTGTTATT+CGG | 0.344224 | tig0024875:+21058 | None:intergenic |
| ATAACGCGTTGATGTTGTTT+AGG | 0.354555 | tig0024875:-23682 | Msa1420850:five_prime_UTR |
| ACTTACAACACATTAATTGA+TGG | 0.359448 | tig0024875:-24046 | Msa1420850:five_prime_UTR |
| TCCATTCATTACGATCAGTT+TGG | 0.363184 | tig0024875:-21527 | Msa1420850:CDS |
| TTTGGTTGGCCAAACTTGAC+AGG | 0.366575 | tig0024875:+21180 | None:intergenic |
| TGGGTCAGGTTTCATCCATC+TGG | 0.368024 | tig0024875:-24909 | Msa1420850:five_prime_UTR |
| AATTCTTTATCCGGGTTTCT+GGG | 0.371051 | tig0024875:-24419 | Msa1420850:five_prime_UTR |
| CTTATAATGCGATGATTAAT+GGG | 0.372076 | tig0024875:-23622 | Msa1420850:five_prime_UTR |
| AGAGGAGGAAATTCTTTATC+CGG | 0.373149 | tig0024875:-24428 | Msa1420850:five_prime_UTR |
| TCTTTCCATAAAGCTTCATT+TGG | 0.376217 | tig0024875:+21432 | None:intergenic |
| TCATTATGCCACAAGGCATT+TGG | 0.382705 | tig0024875:-22656 | Msa1420850:intron |
| CATGTAATCCAAATGCTTCA+TGG | 0.386424 | tig0024875:+23151 | None:intergenic |
| TGCAGGTGCCATGAAGCATT+TGG | 0.386701 | tig0024875:-23159 | Msa1420850:five_prime_UTR |
| AGCATGGAAGATATTGGCTT+TGG | 0.387898 | tig0024875:+21162 | None:intergenic |
| CATAAGAAGTTTACGTATAA+CGG | 0.391769 | tig0024875:-24483 | Msa1420850:five_prime_UTR |
| GAAAAGTTAAGTTGAAAATC+CGG | 0.394379 | tig0024875:-22845 | Msa1420850:five_prime_UTR |
| TTTGATGAAATGCTTCAATC+AGG | 0.397990 | tig0024875:-23878 | Msa1420850:five_prime_UTR |
| GCAGCGTCGTGGATTTGTTC+CGG | 0.401851 | tig0024875:-23654 | Msa1420850:five_prime_UTR |
| TCCTACAATTCATTAATGTC+TGG | 0.405547 | tig0024875:-23941 | Msa1420850:five_prime_UTR |
| CTATCTATGATCCATTCTTC+AGG | 0.411222 | tig0024875:-24856 | Msa1420850:intron |
| CCTCATTGCTTCACAAATCC+CGG | 0.411275 | tig0024875:-24308 | Msa1420850:five_prime_UTR |
| TTGGTTGCTTCTATTAAAGA+TGG | 0.413056 | tig0024875:-22942 | Msa1420850:five_prime_UTR |
| TGAGCTTGTTGGAACAAGAT+TGG | 0.415142 | tig0024875:-21399 | Msa1420850:CDS |
| TCTGGGGTAGCTTCTGATAG+AGG | 0.416544 | tig0024875:-24402 | Msa1420850:five_prime_UTR |
| CGTTGATAATCGAGTGATCA+TGG | 0.418820 | tig0024875:+24177 | None:intergenic |
| GTTGCTGCGTTGGTGAAGAC+GGG | 0.421289 | tig0024875:-23398 | Msa1420850:five_prime_UTR |
| CAATGATAAATTTGTTCTGC+GGG | 0.426603 | tig0024875:-23298 | Msa1420850:five_prime_UTR |
| GAAGTTGCTTTGTTGAACTT+CGG | 0.432318 | tig0024875:-22794 | Msa1420850:five_prime_UTR |
| ACATTGCAAATTGAGCTTGT+TGG | 0.438151 | tig0024875:-21410 | Msa1420850:CDS |
| CGTGCGATGCACTGCTAGAA+AGG | 0.439765 | tig0024875:+24376 | None:intergenic |
| CCAAAAGCTTGGAAGCAATT+CGG | 0.443375 | tig0024875:+22961 | None:intergenic |
| TTTGATTCCATCTATTAAAA+CGG | 0.446260 | tig0024875:+24093 | None:intergenic |
| ACCAGACATTAATGAATTGT+AGG | 0.448210 | tig0024875:+23940 | None:intergenic |
| AGATGGCTTTAAGATCTTAA+GGG | 0.448573 | tig0024875:-22925 | Msa1420850:five_prime_UTR |
| TGGTTTCGTGTTGTTGAATC+CGG | 0.450356 | tig0024875:+24274 | None:intergenic |
| TTCGGAATATTGTTGAGAGA+GGG | 0.464976 | tig0024875:-23772 | Msa1420850:five_prime_UTR |
| TGATGAGGTGTTGAGGTTGG+TGG | 0.468200 | tig0024875:-23264 | Msa1420850:five_prime_UTR |
| ATTGATGGTCTCACTACCTC+TGG | 0.468352 | tig0024875:-22885 | Msa1420850:five_prime_UTR |
| GGTTGCTGCGTTGGTGAAGA+CGG | 0.468793 | tig0024875:-23399 | Msa1420850:five_prime_UTR |
| TTCGTGTTGTTGAATCCGGT+TGG | 0.470292 | tig0024875:+24278 | None:intergenic |
| ATTAATGGTTTGTGTAAGAA+TGG | 0.471278 | tig0024875:-23713 | Msa1420850:five_prime_UTR |
| CTTGATTGTTTGGGTAAAGC+TGG | 0.473206 | tig0024875:-23083 | Msa1420850:five_prime_UTR |
| GAATCCGGTTGGGTTGGACC+CGG | 0.476196 | tig0024875:+24289 | None:intergenic |
| TCCAAACTGATCGTAATGAA+TGG | 0.476290 | tig0024875:+21526 | None:intergenic |
| TTGGATTACATGAACACGTT+GGG | 0.477428 | tig0024875:-23140 | Msa1420850:five_prime_UTR |
| TATAATCCATGGATTATGTA+AGG | 0.478298 | tig0024875:-23192 | Msa1420850:five_prime_UTR |
| AAAACACCATTCGCTTCCTC+CGG | 0.481781 | tig0024875:+23794 | None:intergenic |
| GAAAATCCGGGAGGCTCGAT+TGG | 0.482595 | tig0024875:-22832 | Msa1420850:five_prime_UTR |
| TTGGTTGGCCAAACTTGACA+GGG | 0.483090 | tig0024875:+21181 | None:intergenic |
| ACTCAAAGAGCTGTTATTGA+TGG | 0.484315 | tig0024875:-22900 | Msa1420850:five_prime_UTR |
| AATAGAAGCAACCAAAAGCT+TGG | 0.484532 | tig0024875:+22950 | None:intergenic |
| GGTGCCGAATAACAGTTTGT+AGG | 0.485071 | tig0024875:-21062 | Msa1420850:CDS |
| CTCAACAGAATGAAAGAAGC+TGG | 0.486073 | tig0024875:-23983 | Msa1420850:five_prime_UTR |
| ACCACAACACTATTGTTAAG+AGG | 0.489127 | tig0024875:-24446 | Msa1420850:five_prime_UTR |
| TCGTGTTGTTGAATCCGGTT+GGG | 0.489494 | tig0024875:+24279 | None:intergenic |
| GAGTGTGAATGCGAAGGACT+AGG | 0.489942 | tig0024875:+24344 | None:intergenic |
| CAACTCGTACGAATTGAGAA+AGG | 0.490013 | tig0024875:+24946 | None:intergenic |
| ATATTATAACTCCACACATC+AGG | 0.492736 | tig0024875:+23848 | None:intergenic |
| CGCGGTAACTGTCATTCAAA+GGG | 0.493742 | tig0024875:-22688 | Msa1420850:five_prime_UTR |
| GAGGAGGAAATTCTTTATCC+GGG | 0.494489 | tig0024875:-24427 | Msa1420850:five_prime_UTR |
| TGGGAGGTTGAAGCAAGGGT+TGG | 0.495509 | tig0024875:-23483 | Msa1420850:five_prime_UTR |
| AGCGGATGCAAGGAGGGTGC+TGG | 0.496260 | tig0024875:-23579 | Msa1420850:five_prime_UTR |
| ACTAGAAAATCAAAATTGCC+AGG | 0.502098 | tig0024875:-21097 | Msa1420850:CDS |
| TGCCATCCTTACATAATCCA+TGG | 0.502738 | tig0024875:+23186 | None:intergenic |
| GTGGTACAGGTAATCGCATT+CGG | 0.506627 | tig0024875:+23530 | None:intergenic |
| TATTGATTGTGCTGCAACGC+CGG | 0.508620 | tig0024875:+24975 | None:intergenic |
| TTGTACGGTGGTTGCTGCGT+TGG | 0.508731 | tig0024875:-23408 | Msa1420850:five_prime_UTR |
| ACACTTCATAACCGTGGTAC+AGG | 0.513756 | tig0024875:+23517 | None:intergenic |
| ACATTATAACTCGCCGTACT+CGG | 0.513940 | tig0024875:+23740 | None:intergenic |
| CTTTCTAGCAGTGCATCGCA+CGG | 0.514297 | tig0024875:-24375 | Msa1420850:five_prime_UTR |
| GGTGTGGGAGGTTGAAGCAA+GGG | 0.514715 | tig0024875:-23487 | Msa1420850:five_prime_UTR |
| CATTTGGTTGCACCTCCCGA+GGG | 0.515105 | tig0024875:+21448 | None:intergenic |
| TTGTGAAGCAATGAGGGAGG+AGG | 0.515873 | tig0024875:+24315 | None:intergenic |
| TGGAAGATATTGGCTTTGGT+TGG | 0.516574 | tig0024875:+21166 | None:intergenic |
| TCTGATGCTCTAGCAGCCCT+CGG | 0.517431 | tig0024875:-21464 | Msa1420850:CDS |
| TCGGAATATTGTTGAGAGAG+GGG | 0.517751 | tig0024875:-23771 | Msa1420850:five_prime_UTR |
| TCATTTGGTTGCACCTCCCG+AGG | 0.518833 | tig0024875:+21447 | None:intergenic |
| GTTGTTGAATCCGGTTGGGT+TGG | 0.520913 | tig0024875:+24283 | None:intergenic |
| AATCCGGTTGGGTTGGACCC+GGG | 0.522501 | tig0024875:+24290 | None:intergenic |
| AGTGTTGTGGTGAGATCTGT+TGG | 0.523836 | tig0024875:+24458 | None:intergenic |
| ATAGACACATACCTGAAGAA+TGG | 0.524136 | tig0024875:+24845 | None:intergenic |
| GTTTGATGAGGTGTTGAGGT+TGG | 0.526930 | tig0024875:-23267 | Msa1420850:five_prime_UTR |
| AATCCCGGGTCCAACCCAAC+CGG | 0.530153 | tig0024875:-24293 | Msa1420850:five_prime_UTR |
| TCCTCTTAACAATAGTGTTG+TGG | 0.530428 | tig0024875:+24445 | None:intergenic |
| TTTCGGAATATTGTTGAGAG+AGG | 0.530502 | tig0024875:-23773 | Msa1420850:five_prime_UTR |
| CTCATTGCTTCACAAATCCC+GGG | 0.533470 | tig0024875:-24307 | Msa1420850:five_prime_UTR |
| GAAGATGATGAGTAATGGTT+TGG | 0.537272 | tig0024875:-23345 | Msa1420850:five_prime_UTR |
| ACCCACACGATTATAATCCA+TGG | 0.538307 | tig0024875:-23203 | Msa1420850:five_prime_UTR |
| GTGTTGTAAGTGATAATGTC+AGG | 0.540093 | tig0024875:+24058 | None:intergenic |
| TTGTCGGGGATGAGGAGGAA+AGG | 0.540614 | tig0024875:-23455 | Msa1420850:five_prime_UTR |
| CTGATGCTCTAGCAGCCCTC+GGG | 0.542026 | tig0024875:-21463 | Msa1420850:CDS |
| AACTCGTACGAATTGAGAAA+GGG | 0.543238 | tig0024875:+24947 | None:intergenic |
| AGGTGTGGGAGGTTGAAGCA+AGG | 0.545402 | tig0024875:-23488 | Msa1420850:five_prime_UTR |
| CTGATTCTGATACATTAGTC+CGG | 0.546268 | tig0024875:-22720 | Msa1420850:five_prime_UTR |
| ATCCATGGATTATAATCGTG+TGG | 0.546587 | tig0024875:+23201 | None:intergenic |
| CAAGGAGGTTAGCGGATGCA+AGG | 0.547389 | tig0024875:-23589 | Msa1420850:five_prime_UTR |
| AAAAGTTAAGTTGAAAATCC+GGG | 0.549048 | tig0024875:-22844 | Msa1420850:five_prime_UTR |
| GAAGCATTTCATCAAACAGA+TGG | 0.549380 | tig0024875:+23885 | None:intergenic |
| ATTGCCAGGACATATTTGCT+TGG | 0.552419 | tig0024875:-21083 | Msa1420850:CDS |
| GGCACCAAGCAAATATGTCC+TGG | 0.552536 | tig0024875:+21079 | None:intergenic |
| ATCCATGGATTATGTAAGGA+TGG | 0.553586 | tig0024875:-23188 | Msa1420850:five_prime_UTR |
| CGGGATTTGTGAAGCAATGA+GGG | 0.554298 | tig0024875:+24309 | None:intergenic |
| GTATTATAAGAAGCAAGATC+CGG | 0.556711 | tig0024875:+23320 | None:intergenic |
| GATGATTAATGGGTTGTGTA+AGG | 0.559887 | tig0024875:-23612 | Msa1420850:five_prime_UTR |
| ATGCTCTAGCAGCCCTCGGG+AGG | 0.560805 | tig0024875:-21460 | Msa1420850:CDS |
| ATTTGTTCTGCGGGCAAGCG+AGG | 0.562499 | tig0024875:-23289 | Msa1420850:five_prime_UTR |
| GCATTATAAGTCAAAACCTC+CGG | 0.564745 | tig0024875:+23635 | None:intergenic |
| GAATTGTAGGAAACAACATC+AGG | 0.565322 | tig0024875:+23953 | None:intergenic |
| GGAACTTCTTAGCCCTGCAA+AGG | 0.567332 | tig0024875:+22982 | None:intergenic |
| TCGCGGTAACTGTCATTCAA+AGG | 0.568410 | tig0024875:-22689 | Msa1420850:five_prime_UTR |
| CGAGGTTTGATGAGGTGTTG+AGG | 0.569990 | tig0024875:-23271 | Msa1420850:five_prime_UTR |
| ACAATGATAAATTTGTTCTG+CGG | 0.570903 | tig0024875:-23299 | Msa1420850:five_prime_UTR |
| TTTAGGAATTTGCAGCGTCG+TGG | 0.578301 | tig0024875:-23665 | Msa1420850:five_prime_UTR |
| AATGCACCAATCGAGCCTCC+CGG | 0.578699 | tig0024875:+22826 | None:intergenic |
| TTTCTAGCAGTGCATCGCAC+GGG | 0.579665 | tig0024875:-24374 | Msa1420850:five_prime_UTR |
| GAGGTTAGCGGATGCAAGGA+GGG | 0.585852 | tig0024875:-23585 | Msa1420850:five_prime_UTR |
| CAATTCATTAATGTCTGGTG+CGG | 0.590692 | tig0024875:-23936 | Msa1420850:five_prime_UTR |
| ACTCAAACAATAGAAAACAT+TGG | 0.592068 | tig0024875:+21353 | None:intergenic |
| CAGAAGCTACCCCAGAAACC+CGG | 0.593072 | tig0024875:+24409 | None:intergenic |
| TGATGGGTTTGCGTATTGTA+CGG | 0.595165 | tig0024875:-23423 | Msa1420850:five_prime_UTR |
| GTGTAAGGCAAGGAGGTTAG+CGG | 0.596713 | tig0024875:-23597 | Msa1420850:five_prime_UTR |
| TGATATTGATAAAGCAGTGA+AGG | 0.596911 | tig0024875:-23060 | Msa1420850:five_prime_UTR |
| CCGGGATTTGTGAAGCAATG+AGG | 0.597981 | tig0024875:+24308 | None:intergenic |
| TGGTTGGCCAAACTTGACAG+GGG | 0.599024 | tig0024875:+21182 | None:intergenic |
| TCCATGGATTATAATCGTGT+GGG | 0.599262 | tig0024875:+23202 | None:intergenic |
| GATCAGTTTGGAAAATCCAA+AGG | 0.602613 | tig0024875:-21515 | Msa1420850:CDS |
| GCTGAGAAGATGATGAGTAA+TGG | 0.608252 | tig0024875:-23350 | Msa1420850:five_prime_UTR |
| AGGGGAGATTTATCCGAGTA+CGG | 0.609866 | tig0024875:-23753 | Msa1420850:five_prime_UTR |
| CATGCTGCACAACCTTTGCA+GGG | 0.611718 | tig0024875:-22994 | Msa1420850:five_prime_UTR |
| ATTCTTTATCCGGGTTTCTG+GGG | 0.612683 | tig0024875:-24418 | Msa1420850:five_prime_UTR |
| CAGGAATAAGGCCTGATGTG+TGG | 0.615515 | tig0024875:-23859 | Msa1420850:five_prime_UTR |
| CGGGCAAGCGAGGTTTGATG+AGG | 0.615754 | tig0024875:-23279 | Msa1420850:five_prime_UTR |
| GATGAGTAATGGTTTGGTGC+CGG | 0.616540 | tig0024875:-23339 | Msa1420850:five_prime_UTR |
| AAATGCAGTATAAATTGGAG+TGG | 0.620417 | tig0024875:+24254 | None:intergenic |
| GTAAATTACCAAATGCCTTG+TGG | 0.623294 | tig0024875:+22648 | None:intergenic |
| ATTCTGATACATTAGTCCGG+TGG | 0.624158 | tig0024875:-22717 | Msa1420850:five_prime_UTR |
| ATGGGTTGTGTAAGGCAAGG+AGG | 0.629416 | tig0024875:-23604 | Msa1420850:five_prime_UTR |
| TTTGGATTACATGAACACGT+TGG | 0.636070 | tig0024875:-23141 | Msa1420850:five_prime_UTR |
| AAGAAAGAGTGTGAATGCGA+AGG | 0.637488 | tig0024875:+24338 | None:intergenic |
| TACCCAGAATACGAACCAGA+TGG | 0.639310 | tig0024875:+24894 | None:intergenic |
| GGGAAACCGGAGGAAGCGAA+TGG | 0.642548 | tig0024875:-23800 | Msa1420850:five_prime_UTR |
| TTAATGGGTTGTGTAAGGCA+AGG | 0.651824 | tig0024875:-23607 | Msa1420850:five_prime_UTR |
| GTGGATGAGATAGAGAAACA+AGG | 0.658037 | tig0024875:-23245 | Msa1420850:five_prime_UTR |
| ACAACACTATTGTTAAGAGG+AGG | 0.659996 | tig0024875:-24443 | Msa1420850:five_prime_UTR |
| TTGGTTTGACTTGCACATTG+TGG | 0.660448 | tig0024875:+24132 | None:intergenic |
| TGTTGTAAGTGATAATGTCA+GGG | 0.663495 | tig0024875:+24059 | None:intergenic |
| GGAGGTTAGCGGATGCAAGG+AGG | 0.672556 | tig0024875:-23586 | Msa1420850:five_prime_UTR |
| AGTTACCGCGATCAAACCAC+CGG | 0.674327 | tig0024875:+22701 | None:intergenic |
| GCGTCGTGGATTTGTTCCGG+AGG | 0.677097 | tig0024875:-23651 | Msa1420850:five_prime_UTR |
| TTAGTCCGGTGGTTTGATCG+CGG | 0.677406 | tig0024875:-22706 | Msa1420850:five_prime_UTR |
| GATTTGTGAAGCAATGAGGG+AGG | 0.689065 | tig0024875:+24312 | None:intergenic |
| AAAATGACACTTCATAACCG+TGG | 0.694598 | tig0024875:+23511 | None:intergenic |
| AGTTGCTTTGTTGAACTTCG+GGG | 0.695094 | tig0024875:-22792 | Msa1420850:five_prime_UTR |
| TGGGTTTGCGTATTGTACGG+TGG | 0.697213 | tig0024875:-23420 | Msa1420850:five_prime_UTR |
| TTGCTGCGTTGGTGAAGACG+GGG | 0.699228 | tig0024875:-23397 | Msa1420850:five_prime_UTR |
| ACTGTTATCATTATGCCACA+AGG | 0.716067 | tig0024875:-22663 | Msa1420850:exon |
| GGCTTCATAGACAAGACCAG+AGG | 0.719244 | tig0024875:+22869 | None:intergenic |
| AGTTAAGTTGAAAATCCGGG+AGG | 0.734656 | tig0024875:-22841 | Msa1420850:five_prime_UTR |
| GAATGCGATTACCTGTACCA+CGG | 0.786567 | tig0024875:-23528 | Msa1420850:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTTTTTTTTTTTTTG+TGG | - | tig0024875:24372-24391 | Msa1420850:five_prime_UTR | 10.0% |
| !!! | TAACTTTTTTTTTTTTTTGT+GGG | - | tig0024875:24373-24392 | Msa1420850:five_prime_UTR | 10.0% |
| !!! | TTTTACTACTAATTTATATC+TGG | - | tig0024875:21289-21308 | Msa1420850:intron | 15.0% |
| !! | TTTACTACTAATTTATATCT+GGG | - | tig0024875:21290-21309 | Msa1420850:intron | 15.0% |
| !!! | TTTGCTTTTTTTTATCATTT+GGG | + | tig0024875:21830-21849 | None:intergenic | 15.0% |
| !!! | TTTTAATGCATTGTTATTTT+AGG | - | tig0024875:22201-22220 | Msa1420850:intron | 15.0% |
| !! | AGTTATAATGTTATGATTAA+TGG | - | tig0024875:22299-22318 | Msa1420850:intron | 15.0% |
| !! | TTTATTGTTTATAATGAGTT+TGG | - | tig0024875:23451-23470 | Msa1420850:five_prime_UTR | 15.0% |
| !! | AAAAGTTATAAAAAAAGACA+GGG | + | tig0024875:24361-24380 | None:intergenic | 15.0% |
| !! | AAAAAGTTATAAAAAAAGAC+AGG | + | tig0024875:24362-24381 | None:intergenic | 15.0% |
| !!! | AGTTGATTTTCACAAAATTT+GGG | - | tig0024875:21099-21118 | Msa1420850:CDS | 20.0% |
| !!! | GTCTATTTTAAAAAATTGCA+TGG | - | tig0024875:21199-21218 | Msa1420850:CDS | 20.0% |
| !! | TTCATTATCATATGACTAAT+GGG | + | tig0024875:21250-21269 | None:intergenic | 20.0% |
| !! | TTTCATTATCATATGACTAA+TGG | + | tig0024875:21251-21270 | None:intergenic | 20.0% |
| !! | TTACTACTAATTTATATCTG+GGG | - | tig0024875:21291-21310 | Msa1420850:intron | 20.0% |
| !! | TGCAAATTCAATATTACTTT+CGG | + | tig0024875:21488-21507 | None:intergenic | 20.0% |
| !!! | GTTTGCTTTTTTTTATCATT+TGG | + | tig0024875:21831-21850 | None:intergenic | 20.0% |
| !! | TTTGATTCCATCTATTAAAA+CGG | + | tig0024875:21937-21956 | None:intergenic | 20.0% |
| !! | TTAATAGATGGAATCAAATT+AGG | - | tig0024875:21939-21958 | Msa1420850:intron | 20.0% |
| !!! | ATTTTAATTGTTAATAGCTC+TGG | - | tig0024875:23603-23622 | Msa1420850:five_prime_UTR | 20.0% |
| !! | ATTAAAAATTATGCAGGAAA+TGG | + | tig0024875:23806-23825 | None:intergenic | 20.0% |
| !! | TTTCTATTGTTTGAGTAAAT+AGG | - | tig0024875:24681-24700 | Msa1420850:intron | 20.0% |
| !!! | GAGTTGATTTTCACAAAATT+TGG | - | tig0024875:21098-21117 | Msa1420850:CDS | 25.0% |
| ! | TCATTATCATATGACTAATG+GGG | + | tig0024875:21249-21268 | None:intergenic | 25.0% |
| ! | AAAGACCAAATATTTATGCA+GGG | + | tig0024875:21369-21388 | None:intergenic | 25.0% |
| ! | AATATTGAATTTGCAGATCT+TGG | - | tig0024875:21493-21512 | Msa1420850:CDS | 25.0% |
| ! | CATAAGAAGTTTACGTATAA+CGG | - | tig0024875:21544-21563 | Msa1420850:intron | 25.0% |
| ! | AAGTGAAATGCAGTATAAAT+TGG | + | tig0024875:21781-21800 | None:intergenic | 25.0% |
| ! | ACTTACAACACATTAATTGA+TGG | - | tig0024875:21981-22000 | Msa1420850:intron | 25.0% |
| !!! | ATGCATTGTTATTTTAGGTT+AGG | - | tig0024875:22206-22225 | Msa1420850:intron | 25.0% |
| !!! | TGCATTGTTATTTTAGGTTA+GGG | - | tig0024875:22207-22226 | Msa1420850:intron | 25.0% |
| !! | ATTAATGGTTTGTGTAAGAA+TGG | - | tig0024875:22314-22333 | Msa1420850:intron | 25.0% |
| ! | ACTTATAATGCGATGATTAA+TGG | - | tig0024875:22404-22423 | Msa1420850:intron | 25.0% |
| ! | CTTATAATGCGATGATTAAT+GGG | - | tig0024875:22405-22424 | Msa1420850:intron | 25.0% |
| !! | ACAATGATAAATTTGTTCTG+CGG | - | tig0024875:22728-22747 | Msa1420850:five_prime_UTR | 25.0% |
| !! | TATAATCCATGGATTATGTA+AGG | - | tig0024875:22835-22854 | Msa1420850:five_prime_UTR | 25.0% |
| ! | TAACTCTATTCTTGATTGTT+TGG | - | tig0024875:22934-22953 | Msa1420850:five_prime_UTR | 25.0% |
| ! | AACTCTATTCTTGATTGTTT+GGG | - | tig0024875:22935-22954 | Msa1420850:five_prime_UTR | 25.0% |
| !! | GATTTTCAACTTAACTTTTC+TGG | + | tig0024875:23182-23201 | None:intergenic | 25.0% |
| !!! | GAAAAGTTAAGTTGAAAATC+CGG | - | tig0024875:23182-23201 | Msa1420850:five_prime_UTR | 25.0% |
| !!! | AAAAGTTAAGTTGAAAATCC+GGG | - | tig0024875:23183-23202 | Msa1420850:five_prime_UTR | 25.0% |
| !! | CTGTTATATCTTTTGATGTT+TGG | - | tig0024875:23418-23437 | Msa1420850:five_prime_UTR | 25.0% |
| ! | ATATTAGAAACTTGAACCAA+AGG | + | tig0024875:23566-23585 | None:intergenic | 25.0% |
| ! | TTGAGAATATATGAAGTAGA+CGG | - | tig0024875:23739-23758 | Msa1420850:five_prime_UTR | 25.0% |
| ! | TGCACAATTAAAAATTATGC+AGG | + | tig0024875:23812-23831 | None:intergenic | 25.0% |
| ! | CTAGAACATATAGTTTACTT+TGG | - | tig0024875:24056-24075 | Msa1420850:five_prime_UTR | 25.0% |
| !! | ATAGTTTACTTTGGAGATAT+TGG | - | tig0024875:24065-24084 | Msa1420850:five_prime_UTR | 25.0% |
| ! | TTCAGAAATCAGATTGATAT+GGG | + | tig0024875:24175-24194 | None:intergenic | 25.0% |
| ! | ATTCAGAAATCAGATTGATA+TGG | + | tig0024875:24176-24195 | None:intergenic | 25.0% |
| !! | TACTTTTATGTTCTCTTTTG+AGG | - | tig0024875:24219-24238 | Msa1420850:five_prime_UTR | 25.0% |
| ! | TTCGATGAAGATCATTATAT+GGG | + | tig0024875:24323-24342 | None:intergenic | 25.0% |
| !!! | GAAAACATTGGTATTTTTGT+GGG | + | tig0024875:24665-24684 | None:intergenic | 25.0% |
| !!! | AGAAAACATTGGTATTTTTG+TGG | + | tig0024875:24666-24685 | None:intergenic | 25.0% |
| ! | ACTCAAACAATAGAAAACAT+TGG | + | tig0024875:24677-24696 | None:intergenic | 25.0% |
| ! | TATTGTTTGAGTAAATAGGT+CGG | - | tig0024875:24685-24704 | Msa1420850:intron | 25.0% |
| ! | GACTTTACTTATCTTAATAC+TGG | - | tig0024875:24759-24778 | Msa1420850:intron | 25.0% |
| ! | ATTTTCACAAAATTTGGGTC+AGG | - | tig0024875:21104-21123 | Msa1420850:CDS | 30.0% |
| CAAAGACCAAATATTTATGC+AGG | + | tig0024875:21370-21389 | None:intergenic | 30.0% | |
| TCAAAGACATAGTATGCATT+TGG | + | tig0024875:21444-21463 | None:intergenic | 30.0% | |
| CGTTATACGTAAACTTCTTA+TGG | + | tig0024875:21546-21565 | None:intergenic | 30.0% | |
| AAATGCAGTATAAATTGGAG+TGG | + | tig0024875:21776-21795 | None:intergenic | 30.0% | |
| TCCATCTATTAAAACGGTTT+CGG | + | tig0024875:21931-21950 | None:intergenic | 30.0% | |
| ! | TGTTGTAAGTGATAATGTCA+GGG | + | tig0024875:21971-21990 | None:intergenic | 30.0% |
| TCCTACAATTCATTAATGTC+TGG | - | tig0024875:22086-22105 | Msa1420850:intron | 30.0% | |
| ACCAGACATTAATGAATTGT+AGG | + | tig0024875:22090-22109 | None:intergenic | 30.0% | |
| TTTGATGAAATGCTTCAATC+AGG | - | tig0024875:22149-22168 | Msa1420850:intron | 30.0% | |
| AAATGCTTCAATCAGGAATA+AGG | - | tig0024875:22156-22175 | Msa1420850:intron | 30.0% | |
| ATATTATAACTCCACACATC+AGG | + | tig0024875:22182-22201 | None:intergenic | 30.0% | |
| !!! | TTATTTTAGGTTAGGGAAAC+CGG | - | tig0024875:22214-22233 | Msa1420850:intron | 30.0% |
| GTATTATAAGAAGCAAGATC+CGG | + | tig0024875:22710-22729 | None:intergenic | 30.0% | |
| ! | CAATGATAAATTTGTTCTGC+GGG | - | tig0024875:22729-22748 | Msa1420850:five_prime_UTR | 30.0% |
| !!! | GTTGGGTTTTGGTTTTAATT+TGG | - | tig0024875:22904-22923 | Msa1420850:five_prime_UTR | 30.0% |
| TGATATTGATAAAGCAGTGA+AGG | - | tig0024875:22967-22986 | Msa1420850:five_prime_UTR | 30.0% | |
| !! | AGTGAAGGTTTTTGATGATA+TGG | - | tig0024875:22982-23001 | Msa1420850:five_prime_UTR | 30.0% |
| TTGGTTGCTTCTATTAAAGA+TGG | - | tig0024875:23085-23104 | Msa1420850:five_prime_UTR | 30.0% | |
| !! | AAGATGGCTTTAAGATCTTA+AGG | - | tig0024875:23101-23120 | Msa1420850:five_prime_UTR | 30.0% |
| !! | AGATGGCTTTAAGATCTTAA+GGG | - | tig0024875:23102-23121 | Msa1420850:five_prime_UTR | 30.0% |
| ACATCAAAAGATATAACAGC+TGG | + | tig0024875:23417-23436 | None:intergenic | 30.0% | |
| GGCTTATATATATCATCATG+TGG | - | tig0024875:23624-23643 | Msa1420850:five_prime_UTR | 30.0% | |
| GGCTTATATATATCATCATG+TGG | - | tig0024875:23624-23643 | Msa1420850:five_prime_UTR | 30.0% | |
| AATTAAGTAGTAGCAGTACA+TGG | - | tig0024875:23780-23799 | Msa1420850:five_prime_UTR | 30.0% | |
| !!! | CATTTTGATTATGTGTAGTG+TGG | - | tig0024875:23893-23912 | Msa1420850:five_prime_UTR | 30.0% |
| ! | ATCATATCTTTTCCCTTTGT+TGG | - | tig0024875:23928-23947 | Msa1420850:five_prime_UTR | 30.0% |
| AAAATTGTTGCACCAACAAA+GGG | + | tig0024875:23943-23962 | None:intergenic | 30.0% | |
| TCAGAAATCAGATTGATATG+GGG | + | tig0024875:24174-24193 | None:intergenic | 30.0% | |
| CTTCGATGAAGATCATTATA+TGG | + | tig0024875:24324-24343 | None:intergenic | 30.0% | |
| TTATAAAAAAAGACAGGGTG+AGG | + | tig0024875:24356-24375 | None:intergenic | 30.0% | |
| ! | AGCAGAAGTTTTCTTTACTA+GGG | - | tig0024875:24538-24557 | Msa1420850:intron | 30.0% |
| TCTTTCCATAAAGCTTCATT+TGG | + | tig0024875:24598-24617 | None:intergenic | 30.0% | |
| TTCAAAACTTTGATCAGACT+TGG | - | tig0024875:24803-24822 | Msa1420850:intron | 30.0% | |
| ! | GTAAAAAGCATGGAAGATAT+TGG | + | tig0024875:24874-24893 | None:intergenic | 30.0% |
| ! | TCTGAAACAAGTAAAAAGCA+TGG | + | tig0024875:24884-24903 | None:intergenic | 30.0% |
| !! | TGCTTTTTACTTGTTTCAGA+TGG | - | tig0024875:24884-24903 | Msa1420850:five_prime_UTR | 30.0% |
| ACTAGAAAATCAAAATTGCC+AGG | - | tig0024875:24930-24949 | Msa1420850:five_prime_UTR | 30.0% | |
| TTGACCTACAAACTGTTATT+CGG | + | tig0024875:24972-24991 | None:intergenic | 30.0% | |
| AACTCGTACGAATTGAGAAA+GGG | + | tig0024875:21083-21102 | None:intergenic | 35.0% | |
| CTATCTATGATCCATTCTTC+AGG | - | tig0024875:21171-21190 | Msa1420850:CDS | 35.0% | |
| ATAGACACATACCTGAAGAA+TGG | + | tig0024875:21185-21204 | None:intergenic | 35.0% | |
| CTCGGTTCTCAGATAAAAAT+AGG | + | tig0024875:21317-21336 | None:intergenic | 35.0% | |
| ! | AACCGAGCTTCCAATTTTAT+AGG | - | tig0024875:21330-21349 | Msa1420850:intron | 35.0% |
| ! | ACCGAGCTTCCAATTTTATA+GGG | - | tig0024875:21331-21350 | Msa1420850:intron | 35.0% |
| TCCCTATAAAATTGGAAGCT+CGG | + | tig0024875:21335-21354 | None:intergenic | 35.0% | |
| ! | AGCTTCCAATTTTATAGGGA+CGG | - | tig0024875:21335-21354 | Msa1420850:intron | 35.0% |
| AATATTTATGCAGGGAAGCA+GGG | + | tig0024875:21361-21380 | None:intergenic | 35.0% | |
| AAATATTTATGCAGGGAAGC+AGG | + | tig0024875:21362-21381 | None:intergenic | 35.0% | |
| TGCTTCCCTGCATAAATATT+TGG | - | tig0024875:21361-21380 | Msa1420850:CDS | 35.0% | |
| ACCACAACACTATTGTTAAG+AGG | - | tig0024875:21581-21600 | Msa1420850:intron | 35.0% | |
| TCCTCTTAACAATAGTGTTG+TGG | + | tig0024875:21585-21604 | None:intergenic | 35.0% | |
| ACAACACTATTGTTAAGAGG+AGG | - | tig0024875:21584-21603 | Msa1420850:intron | 35.0% | |
| AGAGGAGGAAATTCTTTATC+CGG | - | tig0024875:21599-21618 | Msa1420850:intron | 35.0% | |
| AAATTCTTTATCCGGGTTTC+TGG | - | tig0024875:21607-21626 | Msa1420850:intron | 35.0% | |
| AATTCTTTATCCGGGTTTCT+GGG | - | tig0024875:21608-21627 | Msa1420850:intron | 35.0% | |
| TATTAAAACGGTTTCGGCTT+TGG | + | tig0024875:21925-21944 | None:intergenic | 35.0% | |
| ! | GTGTTGTAAGTGATAATGTC+AGG | + | tig0024875:21972-21991 | None:intergenic | 35.0% |
| GAATTGTAGGAAACAACATC+AGG | + | tig0024875:22077-22096 | None:intergenic | 35.0% | |
| CAATTCATTAATGTCTGGTG+CGG | - | tig0024875:22091-22110 | Msa1420850:intron | 35.0% | |
| ! | GAAGCATTTCATCAAACAGA+TGG | + | tig0024875:22145-22164 | None:intergenic | 35.0% |
| TTTCGGAATATTGTTGAGAG+AGG | - | tig0024875:22254-22273 | Msa1420850:intron | 35.0% | |
| TTCGGAATATTGTTGAGAGA+GGG | - | tig0024875:22255-22274 | Msa1420850:intron | 35.0% | |
| ! | ATAACGCGTTGATGTTGTTT+AGG | - | tig0024875:22345-22364 | Msa1420850:intron | 35.0% |
| GCATTATAAGTCAAAACCTC+CGG | + | tig0024875:22395-22414 | None:intergenic | 35.0% | |
| !! | GATGATTAATGGGTTGTGTA+AGG | - | tig0024875:22415-22434 | Msa1420850:intron | 35.0% |
| !! | CTGGATGAGTTTTGTGATTT+TGG | - | tig0024875:22467-22486 | Msa1420850:intron | 35.0% |
| AAAATGACACTTCATAACCG+TGG | + | tig0024875:22519-22538 | None:intergenic | 35.0% | |
| !!! | CGGTTATGAAGTGTCATTTT+AGG | - | tig0024875:22519-22538 | Msa1420850:intron | 35.0% |
| !!! | ATGAAGTGTCATTTTAGGTG+TGG | - | tig0024875:22524-22543 | Msa1420850:intron | 35.0% |
| !!! | TGAAGTGTCATTTTAGGTGT+GGG | - | tig0024875:22525-22544 | Msa1420850:intron | 35.0% |
| ! | AGGAAAGGTTTTACGTTTGA+TGG | - | tig0024875:22587-22606 | Msa1420850:intron | 35.0% |
| ! | GGAAAGGTTTTACGTTTGAT+GGG | - | tig0024875:22588-22607 | Msa1420850:intron | 35.0% |
| GAAGATGATGAGTAATGGTT+TGG | - | tig0024875:22682-22701 | Msa1420850:five_prime_UTR | 35.0% | |
| ! | TCCATGGATTATAATCGTGT+GGG | + | tig0024875:22828-22847 | None:intergenic | 35.0% |
| ! | ATCCATGGATTATAATCGTG+TGG | + | tig0024875:22829-22848 | None:intergenic | 35.0% |
| ! | ATCCATGGATTATGTAAGGA+TGG | - | tig0024875:22839-22858 | Msa1420850:five_prime_UTR | 35.0% |
| CATGTAATCCAAATGCTTCA+TGG | + | tig0024875:22879-22898 | None:intergenic | 35.0% | |
| TTTGGATTACATGAACACGT+TGG | - | tig0024875:22886-22905 | Msa1420850:five_prime_UTR | 35.0% | |
| TTGGATTACATGAACACGTT+GGG | - | tig0024875:22887-22906 | Msa1420850:five_prime_UTR | 35.0% | |
| !!! | GGGTTTTGGTTTTAATTTGG+TGG | - | tig0024875:22907-22926 | Msa1420850:five_prime_UTR | 35.0% |
| !! | GAAGGTTTTTGATGATATGG+AGG | - | tig0024875:22985-23004 | Msa1420850:five_prime_UTR | 35.0% |
| AATAGAAGCAACCAAAAGCT+TGG | + | tig0024875:23080-23099 | None:intergenic | 35.0% | |
| ACTCAAAGAGCTGTTATTGA+TGG | - | tig0024875:23127-23146 | Msa1420850:five_prime_UTR | 35.0% | |
| ! | GAAGTTGCTTTGTTGAACTT+CGG | - | tig0024875:23233-23252 | Msa1420850:five_prime_UTR | 35.0% |
| ! | AAGTTGCTTTGTTGAACTTC+GGG | - | tig0024875:23234-23253 | Msa1420850:five_prime_UTR | 35.0% |
| CTGATTCTGATACATTAGTC+CGG | - | tig0024875:23307-23326 | Msa1420850:five_prime_UTR | 35.0% | |
| ACTGTTATCATTATGCCACA+AGG | - | tig0024875:23364-23383 | Msa1420850:five_prime_UTR | 35.0% | |
| GTAAATTACCAAATGCCTTG+TGG | + | tig0024875:23382-23401 | None:intergenic | 35.0% | |
| GAAAATTGTTGCACCAACAA+AGG | + | tig0024875:23944-23963 | None:intergenic | 35.0% | |
| CATGAAGGGGAAAAGTTTAA+CGG | + | tig0024875:23972-23991 | None:intergenic | 35.0% | |
| AAAGCTAGCATGTACATGAA+GGG | + | tig0024875:23986-24005 | None:intergenic | 35.0% | |
| TAAAGCTAGCATGTACATGA+AGG | + | tig0024875:23987-24006 | None:intergenic | 35.0% | |
| TCCATTCATTACGATCAGTT+TGG | - | tig0024875:24500-24519 | Msa1420850:five_prime_UTR | 35.0% | |
| TCCAAACTGATCGTAATGAA+TGG | + | tig0024875:24504-24523 | None:intergenic | 35.0% | |
| GATCAGTTTGGAAAATCCAA+AGG | - | tig0024875:24512-24531 | Msa1420850:five_prime_UTR | 35.0% | |
| ! | CAGCAGAAGTTTTCTTTACT+AGG | - | tig0024875:24537-24556 | Msa1420850:intron | 35.0% |
| TGCAACCAAATGAAGCTTTA+TGG | - | tig0024875:24590-24609 | Msa1420850:intron | 35.0% | |
| ACATTGCAAATTGAGCTTGT+TGG | - | tig0024875:24617-24636 | Msa1420850:intron | 35.0% | |
| !! | AAGTATTGAGTGCAGGATAA+TGG | - | tig0024875:24710-24729 | Msa1420850:intron | 35.0% |
| ! | TCAGACTTGGTTACCAAATT+TGG | - | tig0024875:24816-24835 | Msa1420850:intron | 35.0% |
| CAACTCGTACGAATTGAGAA+AGG | + | tig0024875:21084-21103 | None:intergenic | 40.0% | |
| ! | ATCCATCTGGTTCGTATTCT+GGG | - | tig0024875:21131-21150 | Msa1420850:CDS | 40.0% |
| ACTAATGGGGATTCAGCATA+TGG | + | tig0024875:21236-21255 | None:intergenic | 40.0% | |
| AGTGACAGAATCACTGAGTT+TGG | - | tig0024875:21403-21422 | Msa1420850:CDS | 40.0% | |
| GAGGAGGAAATTCTTTATCC+GGG | - | tig0024875:21600-21619 | Msa1420850:intron | 40.0% | |
| ATTCTTTATCCGGGTTTCTG+GGG | - | tig0024875:21609-21628 | Msa1420850:intron | 40.0% | |
| ! | AAGAAAGAGTGTGAATGCGA+AGG | + | tig0024875:21692-21711 | None:intergenic | 40.0% |
| ! | TGGTTTCGTGTTGTTGAATC+CGG | + | tig0024875:21756-21775 | None:intergenic | 40.0% |
| !! | CGTTGATAATCGAGTGATCA+TGG | + | tig0024875:21853-21872 | None:intergenic | 40.0% |
| ! | TGACTTGCACATTGTGGATA+TGG | + | tig0024875:21892-21911 | None:intergenic | 40.0% |
| !! | TTGGTTTGACTTGCACATTG+TGG | + | tig0024875:21898-21917 | None:intergenic | 40.0% |
| !! | GCCGAAACCGTTTTAATAGA+TGG | - | tig0024875:21927-21946 | Msa1420850:intron | 40.0% |
| CTCAACAGAATGAAAGAAGC+TGG | - | tig0024875:22044-22063 | Msa1420850:intron | 40.0% | |
| ! | AGGAAGCGAATGGTGTTTTT+CGG | - | tig0024875:22237-22256 | Msa1420850:intron | 40.0% |
| TCGGAATATTGTTGAGAGAG+GGG | - | tig0024875:22256-22275 | Msa1420850:intron | 40.0% | |
| ACATTATAACTCGCCGTACT+CGG | + | tig0024875:22290-22309 | None:intergenic | 40.0% | |
| !! | TTAATGGGTTGTGTAAGGCA+AGG | - | tig0024875:22420-22439 | Msa1420850:intron | 40.0% |
| !! | TGATGGGTTTGCGTATTGTA+CGG | - | tig0024875:22604-22623 | Msa1420850:intron | 40.0% |
| GCTGAGAAGATGATGAGTAA+TGG | - | tig0024875:22677-22696 | Msa1420850:five_prime_UTR | 40.0% | |
| GTGGATGAGATAGAGAAACA+AGG | - | tig0024875:22782-22801 | Msa1420850:five_prime_UTR | 40.0% | |
| ACCCACACGATTATAATCCA+TGG | - | tig0024875:22824-22843 | Msa1420850:five_prime_UTR | 40.0% | |
| TGCCATCCTTACATAATCCA+TGG | + | tig0024875:22844-22863 | None:intergenic | 40.0% | |
| ! | TGTAAGGATGGCAATTTTGC+AGG | - | tig0024875:22851-22870 | Msa1420850:five_prime_UTR | 40.0% |
| ! | TACATGAACACGTTGGGTTT+TGG | - | tig0024875:22893-22912 | Msa1420850:five_prime_UTR | 40.0% |
| CTTGATTGTTTGGGTAAAGC+TGG | - | tig0024875:22944-22963 | Msa1420850:five_prime_UTR | 40.0% | |
| CCAAAAGCTTGGAAGCAATT+CGG | + | tig0024875:23069-23088 | None:intergenic | 40.0% | |
| !! | AGTTAAGTTGAAAATCCGGG+AGG | - | tig0024875:23186-23205 | Msa1420850:five_prime_UTR | 40.0% |
| ! | AGTTGCTTTGTTGAACTTCG+GGG | - | tig0024875:23235-23254 | Msa1420850:five_prime_UTR | 40.0% |
| ATTCTGATACATTAGTCCGG+TGG | - | tig0024875:23310-23329 | Msa1420850:five_prime_UTR | 40.0% | |
| ! | TCATTATGCCACAAGGCATT+TGG | - | tig0024875:23371-23390 | Msa1420850:five_prime_UTR | 40.0% |
| AGCTTGACGATTAATAGCTC+TGG | - | tig0024875:23653-23672 | Msa1420850:five_prime_UTR | 40.0% | |
| AAGCTAGCATGTACATGAAG+GGG | + | tig0024875:23985-24004 | None:intergenic | 40.0% | |
| ! | TCTTGCTACTTGTAGCTGTT+TGG | - | tig0024875:24097-24116 | Msa1420850:five_prime_UTR | 40.0% |
| TCATTATATGGGCGTAGCAT+TGG | + | tig0024875:24312-24331 | None:intergenic | 40.0% | |
| CAGAGAACAACAGCTGTAAA+AGG | + | tig0024875:24457-24476 | None:intergenic | 40.0% | |
| ! | GTTCTCTGAAGAAGTTGAGT+TGG | - | tig0024875:24469-24488 | Msa1420850:five_prime_UTR | 40.0% |
| !! | TCTGAAGAAGTTGAGTTGGA+AGG | - | tig0024875:24473-24492 | Msa1420850:five_prime_UTR | 40.0% |
| !! | CTGAAGAAGTTGAGTTGGAA+GGG | - | tig0024875:24474-24493 | Msa1420850:five_prime_UTR | 40.0% |
| GAAAACTTCTGCTGTTCCTT+TGG | + | tig0024875:24531-24550 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGAACAAGAT+TGG | - | tig0024875:24628-24647 | Msa1420850:intron | 40.0% |
| !! | TTGGTATTTTTGTGGGAGCA+GGG | + | tig0024875:24658-24677 | None:intergenic | 40.0% |
| !! | ATTGGTATTTTTGTGGGAGC+AGG | + | tig0024875:24659-24678 | None:intergenic | 40.0% |
| !! | TGGAAGATATTGGCTTTGGT+TGG | + | tig0024875:24864-24883 | None:intergenic | 40.0% |
| !! | AGCATGGAAGATATTGGCTT+TGG | + | tig0024875:24868-24887 | None:intergenic | 40.0% |
| ATTGCCAGGACATATTTGCT+TGG | - | tig0024875:24944-24963 | Msa1420850:five_prime_UTR | 40.0% | |
| ! | CATCCATCTGGTTCGTATTC+TGG | - | tig0024875:21130-21149 | Msa1420850:CDS | 45.0% |
| TACCCAGAATACGAACCAGA+TGG | + | tig0024875:21136-21155 | None:intergenic | 45.0% | |
| AGTGTTGTGGTGAGATCTGT+TGG | + | tig0024875:21572-21591 | None:intergenic | 45.0% | |
| GATTTGTGAAGCAATGAGGG+AGG | + | tig0024875:21718-21737 | None:intergenic | 45.0% | |
| CGGGATTTGTGAAGCAATGA+GGG | + | tig0024875:21721-21740 | None:intergenic | 45.0% | |
| CCTCATTGCTTCACAAATCC+CGG | - | tig0024875:21719-21738 | Msa1420850:intron | 45.0% | |
| CTCATTGCTTCACAAATCCC+GGG | - | tig0024875:21720-21739 | Msa1420850:intron | 45.0% | |
| ! | TCGTGTTGTTGAATCCGGTT+GGG | + | tig0024875:21751-21770 | None:intergenic | 45.0% |
| ! | TTCGTGTTGTTGAATCCGGT+TGG | + | tig0024875:21752-21771 | None:intergenic | 45.0% |
| !!! | TTTTAGGTTAGGGAAACCGG+AGG | - | tig0024875:22217-22236 | Msa1420850:intron | 45.0% |
| AAAACACCATTCGCTTCCTC+CGG | + | tig0024875:22236-22255 | None:intergenic | 45.0% | |
| AGGGGAGATTTATCCGAGTA+CGG | - | tig0024875:22274-22293 | Msa1420850:intron | 45.0% | |
| TTTAGGAATTTGCAGCGTCG+TGG | - | tig0024875:22362-22381 | Msa1420850:intron | 45.0% | |
| GTGGTACAGGTAATCGCATT+CGG | + | tig0024875:22500-22519 | None:intergenic | 45.0% | |
| GAATGCGATTACCTGTACCA+CGG | - | tig0024875:22499-22518 | Msa1420850:intron | 45.0% | |
| ACACTTCATAACCGTGGTAC+AGG | + | tig0024875:22513-22532 | None:intergenic | 45.0% | |
| !!! | AGTGTCATTTTAGGTGTGGG+AGG | - | tig0024875:22528-22547 | Msa1420850:intron | 45.0% |
| ! | GCAAGGGTTGGAGATTTTGT+CGG | - | tig0024875:22556-22575 | Msa1420850:intron | 45.0% |
| ! | CAAGGGTTGGAGATTTTGTC+GGG | - | tig0024875:22557-22576 | Msa1420850:intron | 45.0% |
| ! | AAGGGTTGGAGATTTTGTCG+GGG | - | tig0024875:22558-22577 | Msa1420850:intron | 45.0% |
| GACGGGGAAGATTGAAAAAG+CGG | - | tig0024875:22646-22665 | Msa1420850:intron | 45.0% | |
| !! | GATGAGTAATGGTTTGGTGC+CGG | - | tig0024875:22688-22707 | Msa1420850:five_prime_UTR | 45.0% |
| !! | GTTTGATGAGGTGTTGAGGT+TGG | - | tig0024875:22760-22779 | Msa1420850:five_prime_UTR | 45.0% |
| ! | CCGAATTGCTTCCAAGCTTT+TGG | - | tig0024875:23066-23085 | Msa1420850:five_prime_UTR | 45.0% |
| ! | ATTGATGGTCTCACTACCTC+TGG | - | tig0024875:23142-23161 | Msa1420850:five_prime_UTR | 45.0% |
| TCGCGGTAACTGTCATTCAA+AGG | - | tig0024875:23338-23357 | Msa1420850:five_prime_UTR | 45.0% | |
| CGCGGTAACTGTCATTCAAA+GGG | - | tig0024875:23339-23358 | Msa1420850:five_prime_UTR | 45.0% | |
| GAACCAAAGGCTCAACTGAA+GGG | + | tig0024875:23553-23572 | None:intergenic | 45.0% | |
| TGAACCAAAGGCTCAACTGA+AGG | + | tig0024875:23554-23573 | None:intergenic | 45.0% | |
| AAGGGGAAAAGTTTAACGGC+AGG | + | tig0024875:23968-23987 | None:intergenic | 45.0% | |
| !! | TGGTATTTTTGTGGGAGCAG+GGG | + | tig0024875:24657-24676 | None:intergenic | 45.0% |
| !! | GTCGGAAAAGTATTGAGTGC+AGG | - | tig0024875:24703-24722 | Msa1420850:intron | 45.0% |
| ACAGGGGCTTGAACCAAATT+TGG | + | tig0024875:24832-24851 | None:intergenic | 45.0% | |
| ! | TTGGTTGGCCAAACTTGACA+GGG | + | tig0024875:24849-24868 | None:intergenic | 45.0% |
| ! | TTTGGTTGGCCAAACTTGAC+AGG | + | tig0024875:24850-24869 | None:intergenic | 45.0% |
| ! | GGTGCCGAATAACAGTTTGT+AGG | - | tig0024875:24965-24984 | Msa1420850:five_prime_UTR | 45.0% |
| TGGGTCAGGTTTCATCCATC+TGG | - | tig0024875:21118-21137 | Msa1420850:CDS | 50.0% | |
| CAGGGCCGTCCCTATAAAAT+TGG | + | tig0024875:21343-21362 | None:intergenic | 50.0% | |
| ! | TCTGGGGTAGCTTCTGATAG+AGG | - | tig0024875:21625-21644 | Msa1420850:intron | 50.0% |
| ! | CTTTCTAGCAGTGCATCGCA+CGG | - | tig0024875:21652-21671 | Msa1420850:intron | 50.0% |
| ! | TTTCTAGCAGTGCATCGCAC+GGG | - | tig0024875:21653-21672 | Msa1420850:intron | 50.0% |
| GAGTGTGAATGCGAAGGACT+AGG | + | tig0024875:21686-21705 | None:intergenic | 50.0% | |
| TTGTGAAGCAATGAGGGAGG+AGG | + | tig0024875:21715-21734 | None:intergenic | 50.0% | |
| CCGGGATTTGTGAAGCAATG+AGG | + | tig0024875:21722-21741 | None:intergenic | 50.0% | |
| GTTGTTGAATCCGGTTGGGT+TGG | + | tig0024875:21747-21766 | None:intergenic | 50.0% | |
| CAGGAATAAGGCCTGATGTG+TGG | - | tig0024875:22168-22187 | Msa1420850:intron | 50.0% | |
| ! | ATGGGTTGTGTAAGGCAAGG+AGG | - | tig0024875:22423-22442 | Msa1420850:intron | 50.0% |
| GTGTAAGGCAAGGAGGTTAG+CGG | - | tig0024875:22430-22449 | Msa1420850:intron | 50.0% | |
| ! | TGGAGATTTTGTCGGGGATG+AGG | - | tig0024875:22564-22583 | Msa1420850:intron | 50.0% |
| ! | AGATTTTGTCGGGGATGAGG+AGG | - | tig0024875:22567-22586 | Msa1420850:intron | 50.0% |
| TGGGTTTGCGTATTGTACGG+TGG | - | tig0024875:22607-22626 | Msa1420850:intron | 50.0% | |
| !! | CGAGGTTTGATGAGGTGTTG+AGG | - | tig0024875:22756-22775 | Msa1420850:five_prime_UTR | 50.0% |
| !! | TGATGAGGTGTTGAGGTTGG+TGG | - | tig0024875:22763-22782 | Msa1420850:five_prime_UTR | 50.0% |
| ! | TGCAGGTGCCATGAAGCATT+TGG | - | tig0024875:22868-22887 | Msa1420850:five_prime_UTR | 50.0% |
| TCATGCTGCACAACCTTTGC+AGG | - | tig0024875:23032-23051 | Msa1420850:five_prime_UTR | 50.0% | |
| CATGCTGCACAACCTTTGCA+GGG | - | tig0024875:23033-23052 | Msa1420850:five_prime_UTR | 50.0% | |
| GGAACTTCTTAGCCCTGCAA+AGG | + | tig0024875:23048-23067 | None:intergenic | 50.0% | |
| GGCTTCATAGACAAGACCAG+AGG | + | tig0024875:23161-23180 | None:intergenic | 50.0% | |
| TTAGTCCGGTGGTTTGATCG+CGG | - | tig0024875:23321-23340 | Msa1420850:five_prime_UTR | 50.0% | |
| AGTTACCGCGATCAAACCAC+CGG | + | tig0024875:23329-23348 | None:intergenic | 50.0% | |
| GATCCCTTCAGTTGAGCCTT+TGG | - | tig0024875:23547-23566 | Msa1420850:five_prime_UTR | 50.0% | |
| !! | TAGCGGCGAGTTTGGTGTTT+GGG | + | tig0024875:24286-24305 | None:intergenic | 50.0% |
| !! | TTAGCGGCGAGTTTGGTGTT+TGG | + | tig0024875:24287-24306 | None:intergenic | 50.0% |
| !! | ATTGGTGTTAGCGGCGAGTT+TGG | + | tig0024875:24294-24313 | None:intergenic | 50.0% |
| GTTCAAGCCCCTGTCAAGTT+TGG | - | tig0024875:24838-24857 | Msa1420850:intron | 50.0% | |
| ! | TGGTTGGCCAAACTTGACAG+GGG | + | tig0024875:24848-24867 | None:intergenic | 50.0% |
| GGCACCAAGCAAATATGTCC+TGG | + | tig0024875:24951-24970 | None:intergenic | 50.0% | |
| CAGAAGCTACCCCAGAAACC+CGG | + | tig0024875:21621-21640 | None:intergenic | 55.0% | |
| CGTGCGATGCACTGCTAGAA+AGG | + | tig0024875:21654-21673 | None:intergenic | 55.0% | |
| ! | CGGTTTCGGCTTTGGCGATT+TGG | + | tig0024875:21917-21936 | None:intergenic | 55.0% |
| ! | GCAGCGTCGTGGATTTGTTC+CGG | - | tig0024875:22373-22392 | Msa1420850:intron | 55.0% |
| ! | CAAGGAGGTTAGCGGATGCA+AGG | - | tig0024875:22438-22457 | Msa1420850:intron | 55.0% |
| ! | GAGGTTAGCGGATGCAAGGA+GGG | - | tig0024875:22442-22461 | Msa1420850:intron | 55.0% |
| AGGTGTGGGAGGTTGAAGCA+AGG | - | tig0024875:22539-22558 | Msa1420850:intron | 55.0% | |
| GGTGTGGGAGGTTGAAGCAA+GGG | - | tig0024875:22540-22559 | Msa1420850:intron | 55.0% | |
| TGGGAGGTTGAAGCAAGGGT+TGG | - | tig0024875:22544-22563 | Msa1420850:intron | 55.0% | |
| TTGTCGGGGATGAGGAGGAA+AGG | - | tig0024875:22572-22591 | Msa1420850:intron | 55.0% | |
| TTGTACGGTGGTTGCTGCGT+TGG | - | tig0024875:22619-22638 | Msa1420850:intron | 55.0% | |
| ! | GGTTGCTGCGTTGGTGAAGA+CGG | - | tig0024875:22628-22647 | Msa1420850:intron | 55.0% |
| ! | GTTGCTGCGTTGGTGAAGAC+GGG | - | tig0024875:22629-22648 | Msa1420850:intron | 55.0% |
| ! | TTGCTGCGTTGGTGAAGACG+GGG | - | tig0024875:22630-22649 | Msa1420850:intron | 55.0% |
| ATTTGTTCTGCGGGCAAGCG+AGG | - | tig0024875:22738-22757 | Msa1420850:five_prime_UTR | 55.0% | |
| GAAAATCCGGGAGGCTCGAT+TGG | - | tig0024875:23195-23214 | Msa1420850:five_prime_UTR | 55.0% | |
| AATGCACCAATCGAGCCTCC+CGG | + | tig0024875:23204-23223 | None:intergenic | 55.0% | |
| !! | GGGCGTAGCATTGGTGTTAG+CGG | + | tig0024875:24303-24322 | None:intergenic | 55.0% |
| TCTGATGCTCTAGCAGCCCT+CGG | - | tig0024875:24563-24582 | Msa1420850:intron | 55.0% | |
| CATTTGGTTGCACCTCCCGA+GGG | + | tig0024875:24582-24601 | None:intergenic | 55.0% | |
| TCATTTGGTTGCACCTCCCG+AGG | + | tig0024875:24583-24602 | None:intergenic | 55.0% | |
| AATCCCGGGTCCAACCCAAC+CGG | - | tig0024875:21734-21753 | Msa1420850:intron | 60.0% | |
| !! | AATCCGGTTGGGTTGGACCC+GGG | + | tig0024875:21740-21759 | None:intergenic | 60.0% |
| !! | GAATCCGGTTGGGTTGGACC+CGG | + | tig0024875:21741-21760 | None:intergenic | 60.0% |
| GGGAAACCGGAGGAAGCGAA+TGG | - | tig0024875:22227-22246 | Msa1420850:intron | 60.0% | |
| ! | GCGTCGTGGATTTGTTCCGG+AGG | - | tig0024875:22376-22395 | Msa1420850:intron | 60.0% |
| ! | GGAGGTTAGCGGATGCAAGG+AGG | - | tig0024875:22441-22460 | Msa1420850:intron | 60.0% |
| CGGGCAAGCGAGGTTTGATG+AGG | - | tig0024875:22748-22767 | Msa1420850:five_prime_UTR | 60.0% | |
| CTGATGCTCTAGCAGCCCTC+GGG | - | tig0024875:24564-24583 | Msa1420850:intron | 60.0% | |
| ! | AGCGGATGCAAGGAGGGTGC+TGG | - | tig0024875:22448-22467 | Msa1420850:intron | 65.0% |
| ATGCTCTAGCAGCCCTCGGG+AGG | - | tig0024875:24567-24586 | Msa1420850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024875 | gene | 21053 | 24996 | 21053 | ID=Msa1420850;Name=Msa1420850 |
| tig0024875 | mRNA | 21053 | 24996 | 21053 | ID=Msa1420850-mRNA-1;Parent=Msa1420850;Name=Msa1420850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=2007|0.4|0.33|1|0.2|0.16|6|0|139 |
| tig0024875 | exon | 21053 | 21229 | 21053 | ID=Msa1420850-mRNA-1:exon:1765;Parent=Msa1420850-mRNA-1 |
| tig0024875 | exon | 21338 | 21346 | 21338 | ID=Msa1420850-mRNA-1:exon:1764;Parent=Msa1420850-mRNA-1 |
| tig0024875 | exon | 21361 | 21554 | 21361 | ID=Msa1420850-mRNA-1:exon:1763;Parent=Msa1420850-mRNA-1 |
| tig0024875 | exon | 21563 | 21585 | 21563 | ID=Msa1420850-mRNA-1:exon:1762;Parent=Msa1420850-mRNA-1 |
| tig0024875 | exon | 22657 | 24540 | 22657 | ID=Msa1420850-mRNA-1:exon:1761;Parent=Msa1420850-mRNA-1 |
| tig0024875 | exon | 24857 | 24996 | 24857 | ID=Msa1420850-mRNA-1:exon:1760;Parent=Msa1420850-mRNA-1 |
| tig0024875 | five_prime_UTR | 24857 | 24996 | 24857 | ID=Msa1420850-mRNA-1:five_prime_utr;Parent=Msa1420850-mRNA-1 |
| tig0024875 | five_prime_UTR | 22674 | 24540 | 22674 | ID=Msa1420850-mRNA-1:five_prime_utr;Parent=Msa1420850-mRNA-1 |
| tig0024875 | CDS | 22657 | 22673 | 22657 | ID=Msa1420850-mRNA-1:cds;Parent=Msa1420850-mRNA-1 |
| tig0024875 | CDS | 21563 | 21585 | 21563 | ID=Msa1420850-mRNA-1:cds;Parent=Msa1420850-mRNA-1 |
| tig0024875 | CDS | 21361 | 21554 | 21361 | ID=Msa1420850-mRNA-1:cds;Parent=Msa1420850-mRNA-1 |
| tig0024875 | CDS | 21338 | 21346 | 21338 | ID=Msa1420850-mRNA-1:cds;Parent=Msa1420850-mRNA-1 |
| tig0024875 | CDS | 21053 | 21229 | 21053 | ID=Msa1420850-mRNA-1:cds;Parent=Msa1420850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
