Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422240 | sp|Q86U06|RBM23_HUMAN | 45.977 | 174 | 86 | 3 | 170 | 340 | 114 | 282 | 4.15e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422240 | G7JAD6 | 97.647 | 340 | 4 | 2 | 1 | 340 | 1 | 336 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1272600 | Msa1422240 | 0.837211 | 5.940639e-57 | -8.615850e-47 |
| Msa1310450 | Msa1422240 | 0.859879 | 3.046864e-63 | -8.615850e-47 |
| Msa1016910 | Msa1422240 | 0.801442 | 8.988780e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422240 | MtrunA17_Chr3g0129451 | 90.710 | 366 | 4 | 3 | 1 | 340 | 1 | 362 | 0.0 | 610 |
| Msa1422240 | MtrunA17_Chr8g0383661 | 69.164 | 347 | 75 | 8 | 1 | 340 | 1 | 322 | 6.18e-118 | 352 |
| Msa1422240 | MtrunA17_Chr1g0211191 | 77.863 | 131 | 27 | 1 | 212 | 340 | 63 | 193 | 1.70e-64 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422240 | AT5G09880.1 | 54.094 | 342 | 97 | 9 | 1 | 340 | 1 | 284 | 2.46e-87 | 272 |
| Msa1422240 | AT2G16940.2 | 49.468 | 376 | 131 | 10 | 1 | 340 | 1 | 353 | 1.80e-74 | 241 |
| Msa1422240 | AT2G16940.1 | 48.276 | 348 | 128 | 7 | 1 | 340 | 1 | 304 | 6.23e-74 | 238 |
| Msa1422240 | AT2G16940.3 | 48.485 | 363 | 143 | 11 | 1 | 340 | 1 | 342 | 9.37e-74 | 239 |
| Msa1422240 | AT2G16940.5 | 75.000 | 148 | 35 | 2 | 195 | 340 | 16 | 163 | 2.51e-68 | 220 |
| Msa1422240 | AT2G16940.4 | 75.000 | 148 | 35 | 2 | 195 | 340 | 16 | 163 | 2.51e-68 | 220 |
Find 120 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTTTCTGTAGCCTTTA+AGG | 0.079065 | tig0025353:+1751 | None:intergenic |
| ACAGTTCTTTGATCCCTTTC+TGG | 0.126170 | tig0025353:+1900 | None:intergenic |
| ATGTGAATTGCAGGAGATTT+AGG | 0.155732 | tig0025353:-1956 | Msa1422240:intron |
| ATAATTACAGATGCCCTTAA+AGG | 0.230539 | tig0025353:-1765 | Msa1422240:intron |
| AAGGAAATTACTTTGGAGTT+AGG | 0.272660 | tig0025353:+4908 | None:intergenic |
| TTGAGAATTTGAGAATTTCT+AGG | 0.295089 | tig0025353:+4832 | None:intergenic |
| TGTGAATTGCAGGAGATTTA+GGG | 0.295766 | tig0025353:-1955 | Msa1422240:intron |
| AGAGTCGTTCTGAGAGAGAT+AGG | 0.308214 | tig0025353:-4337 | Msa1422240:CDS |
| TCCCTTTCTGTAGCCTTTAA+GGG | 0.338234 | tig0025353:+1752 | None:intergenic |
| CTCTCTGGCCAACTTCTTCT+AGG | 0.365937 | tig0025353:-361 | Msa1422240:CDS |
| ATAGGGACAGAGAGAAAGAT+AGG | 0.377962 | tig0025353:-4439 | Msa1422240:CDS |
| ATAGGGAGAGGGAGAAGGAT+AGG | 0.382195 | tig0025353:-4457 | Msa1422240:CDS |
| AGAGGGAGAAAGAGAGAGAA+AGG | 0.396093 | tig0025353:-4412 | Msa1422240:CDS |
| GAGAAAGGAGAGAGAGGGAA+AGG | 0.397046 | tig0025353:-4397 | Msa1422240:CDS |
| CCAATGGCAATTGCCCTCTC+TGG | 0.397227 | tig0025353:-376 | Msa1422240:CDS |
| AGAGGGAAAGGGAGAAGGAA+AGG | 0.397543 | tig0025353:-4385 | Msa1422240:CDS |
| TTCTCTTCAGGCTTAGATAG+AGG | 0.399521 | tig0025353:+4883 | None:intergenic |
| AGAGAGATAGGGAGATTGAA+AGG | 0.406623 | tig0025353:-4325 | Msa1422240:CDS |
| GAGGGAAAGGGAGAAGGAAA+GGG | 0.406929 | tig0025353:-4384 | Msa1422240:CDS |
| AGAAGGAAAGGGAGAGAGAA+AGG | 0.411216 | tig0025353:-4373 | Msa1422240:CDS |
| TCCCTTTCTGGATCTGCCTC+AGG | 0.411587 | tig0025353:+1912 | None:intergenic |
| TATGAATTCTTCTCAAAAGC+TGG | 0.417795 | tig0025353:-1725 | Msa1422240:CDS |
| GTCATCGGAGTGGCAGAGAT+AGG | 0.421254 | tig0025353:-4538 | Msa1422240:CDS |
| GTGAGAGAAGCAGCAGAGAC+AGG | 0.423154 | tig0025353:-4487 | Msa1422240:CDS |
| CTCGTCGTCGCCATCGCCGC+TGG | 0.423256 | tig0025353:+4610 | None:intergenic |
| GCAGAGACAGGGACAGGGAT+AGG | 0.430355 | tig0025353:-4475 | Msa1422240:CDS |
| ATAGGGATAGGGATAGGGAT+AGG | 0.433134 | tig0025353:-4520 | Msa1422240:CDS |
| GAGAACGGGAGGAGAGAGAT+AGG | 0.434009 | tig0025353:-4247 | Msa1422240:CDS |
| AGAAAGGAGAGAGAGGGAAA+GGG | 0.436784 | tig0025353:-4396 | Msa1422240:CDS |
| AAGAGAGAGAAAGGAGAGAG+AGG | 0.444041 | tig0025353:-4403 | Msa1422240:CDS |
| GAGAGAGAGGGAAAGGGAGA+AGG | 0.444228 | tig0025353:-4390 | Msa1422240:CDS |
| TAGGGAGAGGGAGAAGGATA+GGG | 0.447169 | tig0025353:-4456 | Msa1422240:CDS |
| GGAGAAGACAGTGGAAGAGC+AGG | 0.447806 | tig0025353:-4741 | Msa1422240:CDS |
| AGAGGGGAAGGAAATTACTT+TGG | 0.448127 | tig0025353:+4901 | None:intergenic |
| CAGGGATAGGGAGAGGGAGA+AGG | 0.451208 | tig0025353:-4462 | Msa1422240:CDS |
| GCTGGTGTGGTAGGACCATA+TGG | 0.452033 | tig0025353:-268 | Msa1422240:CDS |
| GAAGCAGCAGAGACAGGGAC+AGG | 0.453028 | tig0025353:-4481 | Msa1422240:CDS |
| TAGGGATAGGGATAGGGATA+GGG | 0.453327 | tig0025353:-4519 | Msa1422240:CDS |
| ATCAAGATACCTCTCTCAAC+TGG | 0.453887 | tig0025353:+191 | None:intergenic |
| TTGAAAGGGAAGAGAGAGAA+AGG | 0.454918 | tig0025353:-4310 | Msa1422240:CDS |
| TTTCTGTCCACGGCTCCATA+TGG | 0.456788 | tig0025353:+253 | None:intergenic |
| GCAGAGATAGGGATAGGGAT+AGG | 0.460097 | tig0025353:-4526 | Msa1422240:CDS |
| ACGAGACAGGGAGAGAGAAC+GGG | 0.462813 | tig0025353:-4261 | Msa1422240:CDS |
| TTTCGACGAGTACGAATACT+TGG | 0.467112 | tig0025353:-4762 | Msa1422240:CDS |
| TCAAGACGATCTAAAGGAGT+TGG | 0.473620 | tig0025353:-1265 | Msa1422240:CDS |
| TGAGAATTTGAGAATTTCTA+GGG | 0.475276 | tig0025353:+4833 | None:intergenic |
| GCGCTTTCTGTAGCTCCGTT+CGG | 0.475741 | tig0025353:+4679 | None:intergenic |
| TCCTACCACACCAGCAGCTC+CGG | 0.476293 | tig0025353:+276 | None:intergenic |
| GAGAGAAAGATAGGAGAGAG+AGG | 0.477907 | tig0025353:-4430 | Msa1422240:CDS |
| AGAGAGAGAAAGGAGAGAGA+GGG | 0.480692 | tig0025353:-4402 | Msa1422240:CDS |
| TAAGCCGTTCTGAACGAGAC+AGG | 0.480757 | tig0025353:-4274 | Msa1422240:CDS |
| CAGAGACAGGGACAGGGATA+GGG | 0.489236 | tig0025353:-4474 | Msa1422240:CDS |
| GAGAGATAGGGAGATTGAAA+GGG | 0.490897 | tig0025353:-4324 | Msa1422240:CDS |
| AAGAGAAGGTCCAGCGGCGA+TGG | 0.494232 | tig0025353:-4620 | Msa1422240:CDS |
| CCAGAGAGGGCAATTGCCAT+TGG | 0.495102 | tig0025353:+376 | None:intergenic |
| CAGAGATAGGGATAGGGATA+GGG | 0.495819 | tig0025353:-4525 | Msa1422240:CDS |
| TCTCTTCAGGCTTAGATAGA+GGG | 0.497052 | tig0025353:+4884 | None:intergenic |
| TCTTCTAGGACAACCTGTAA+TGG | 0.497742 | tig0025353:-347 | Msa1422240:CDS |
| GAGAGATGTTCGTCTGATCA+TGG | 0.499359 | tig0025353:-1296 | Msa1422240:CDS |
| AGAGAAAGATAGGAGAGAGA+GGG | 0.499828 | tig0025353:-4429 | Msa1422240:CDS |
| GAGAGAAGAAGAATTATCAA+TGG | 0.504916 | tig0025353:-4786 | Msa1422240:exon |
| CAAGACGATCTAAAGGAGTT+GGG | 0.512572 | tig0025353:-1264 | Msa1422240:intron |
| GGCCAGCAAATTAACCTGAT+AGG | 0.512692 | tig0025353:+1872 | None:intergenic |
| GCCCTTAAAGGCTACAGAAA+GGG | 0.516293 | tig0025353:-1753 | Msa1422240:CDS |
| AACGAGACAGGGAGAGAGAA+CGG | 0.517556 | tig0025353:-4262 | Msa1422240:CDS |
| ACAGGGACAGGGATAGGGAG+AGG | 0.518156 | tig0025353:-4469 | Msa1422240:CDS |
| CGTGGACAGAAAACTGTATG+TGG | 0.520432 | tig0025353:-242 | Msa1422240:CDS |
| TAGTAGTATTAGATTGAACT+AGG | 0.523105 | tig0025353:+299 | None:intergenic |
| GGGAAGAGAGAGAAAGGTCT+CGG | 0.529131 | tig0025353:-4304 | Msa1422240:CDS |
| AAAGGGAGAGAGAAAGGTCT+CGG | 0.535178 | tig0025353:-4367 | Msa1422240:CDS |
| TAGAAGAAGTTGGCCAGAGA+GGG | 0.535398 | tig0025353:+363 | None:intergenic |
| CAGGTTGTCCTAGAAGAAGT+TGG | 0.538721 | tig0025353:+353 | None:intergenic |
| GAGTCGTTCTGAGAGAGATA+GGG | 0.540188 | tig0025353:-4336 | Msa1422240:CDS |
| ACCGTGACAAGGAGCGTCAT+CGG | 0.541386 | tig0025353:-4553 | Msa1422240:CDS |
| GGAGTGGCAGAGATAGGGAT+AGG | 0.544770 | tig0025353:-4532 | Msa1422240:CDS |
| AGGAACTCAAGACGATCTAA+AGG | 0.546738 | tig0025353:-1271 | Msa1422240:CDS |
| AGCCTGAGGCAGATCCAGAA+AGG | 0.553950 | tig0025353:-1914 | Msa1422240:CDS |
| TCATCGGAGTGGCAGAGATA+GGG | 0.554807 | tig0025353:-4537 | Msa1422240:CDS |
| CAGGGACAGGGATAGGGAGA+GGG | 0.555006 | tig0025353:-4468 | Msa1422240:CDS |
| GCCTGAGGCAGATCCAGAAA+GGG | 0.557148 | tig0025353:-1913 | Msa1422240:CDS |
| AGGAGAGAGATAGGTCTCGC+AGG | 0.557344 | tig0025353:-4238 | Msa1422240:CDS |
| AATACTACTACCGGAGCTGC+TGG | 0.559154 | tig0025353:-286 | Msa1422240:CDS |
| CTCTTCAGGCTTAGATAGAG+GGG | 0.563695 | tig0025353:+4885 | None:intergenic |
| GTTCAATCTAATACTACTAC+CGG | 0.564360 | tig0025353:-295 | Msa1422240:CDS |
| TGAGAGAAGCAGCAGAGACA+GGG | 0.564738 | tig0025353:-4486 | Msa1422240:CDS |
| TGCCCTTAAAGGCTACAGAA+AGG | 0.565916 | tig0025353:-1754 | Msa1422240:CDS |
| AGGAGCAAGAGAAGGTCCAG+CGG | 0.565959 | tig0025353:-4626 | Msa1422240:CDS |
| TCCGATGACGCTCCTTGTCA+CGG | 0.566550 | tig0025353:+4552 | None:intergenic |
| ATTCTTCTCAAAAGCTGGCA+AGG | 0.568033 | tig0025353:-1720 | Msa1422240:intron |
| TGATGCAATGTCGGTGCCAA+TGG | 0.571085 | tig0025353:-392 | Msa1422240:CDS |
| GAAAGAAACGGTCGAGCCTG+AGG | 0.571800 | tig0025353:-1928 | Msa1422240:CDS |
| TCTCAGTCATATTGAAGTGA+AGG | 0.572231 | tig0025353:+215 | None:intergenic |
| AAGCGCGATGAAATTGAAGA+TGG | 0.580570 | tig0025353:-4662 | Msa1422240:CDS |
| TCTCCCTGTCTCGTTCAGAA+CGG | 0.582098 | tig0025353:+4270 | None:intergenic |
| TGTAATGGTAAAACCTTCTG+AGG | 0.586376 | tig0025353:-332 | Msa1422240:CDS |
| AAGAGAAGAGGAGCAAGAGA+AGG | 0.591475 | tig0025353:-4634 | Msa1422240:CDS |
| AAGCAGCAGAGACAGGGACA+GGG | 0.593380 | tig0025353:-4480 | Msa1422240:CDS |
| TACTACCGGAGCTGCTGGTG+TGG | 0.594160 | tig0025353:-281 | Msa1422240:CDS |
| AAGATGGCACTGAAGAGAAG+AGG | 0.608258 | tig0025353:-4646 | Msa1422240:CDS |
| CTAGAAGAAGTTGGCCAGAG+AGG | 0.613365 | tig0025353:+362 | None:intergenic |
| TCAGGCTTAGATAGAGGGGA+AGG | 0.614703 | tig0025353:+4889 | None:intergenic |
| ATGTTCGTCTGATCATGGAT+AGG | 0.614989 | tig0025353:-1291 | Msa1422240:CDS |
| GTGGACAGAAAACTGTATGT+GGG | 0.617778 | tig0025353:-241 | Msa1422240:CDS |
| GACTGAGAGCCAGTTGAGAG+AGG | 0.620167 | tig0025353:-200 | Msa1422240:CDS |
| CGACGAGCGTGTCTCGAAGA+GGG | 0.621254 | tig0025353:-4594 | Msa1422240:CDS |
| AAGCCGTTCTGAACGAGACA+GGG | 0.624960 | tig0025353:-4273 | Msa1422240:CDS |
| AGACAGGGAGAGAGAACGGG+AGG | 0.626235 | tig0025353:-4258 | Msa1422240:CDS |
| ACCGGAGCTGCTGGTGTGGT+AGG | 0.626244 | tig0025353:-277 | Msa1422240:CDS |
| ACGACGAGCGTGTCTCGAAG+AGG | 0.626312 | tig0025353:-4595 | Msa1422240:CDS |
| GAGTGGCAGAGATAGGGATA+GGG | 0.627774 | tig0025353:-4531 | Msa1422240:CDS |
| TCGTGATGATGACCGTGACA+AGG | 0.628477 | tig0025353:-4564 | Msa1422240:CDS |
| GATAGGGATAGGGACAGAGA+CGG | 0.631991 | tig0025353:-4509 | Msa1422240:CDS |
| ATTTAGGGAGAAGAAAGAAA+CGG | 0.635597 | tig0025353:-1940 | Msa1422240:CDS |
| ATTTCGAAATGAGAGATAGC+CGG | 0.635859 | tig0025353:-4193 | Msa1422240:intron |
| GACAAGGAGCGTCATCGGAG+TGG | 0.639067 | tig0025353:-4548 | Msa1422240:CDS |
| CGAATACTTGGAGAAGACAG+TGG | 0.665678 | tig0025353:-4750 | Msa1422240:CDS |
| GGGAGAGAGAAAGGTCTCGG+AGG | 0.668137 | tig0025353:-4364 | Msa1422240:CDS |
| TGGACAGAAAACTGTATGTG+GGG | 0.675066 | tig0025353:-240 | Msa1422240:CDS |
| GGTAGGACCATATGGAGCCG+TGG | 0.677350 | tig0025353:-260 | Msa1422240:CDS |
| AAAGCAGCGACAAAACCGAA+CGG | 0.685083 | tig0025353:-4694 | Msa1422240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTACATTAATTAAT+TGG | - | tig0025353:2876-2895 | Msa1422240:intron | 10.0% |
| !! | AAAAAATGATAATATATCAA+AGG | - | tig0025353:3521-3540 | Msa1422240:intron | 10.0% |
| !!! | TATTTTTAATCTCATTTATG+TGG | + | tig0025353:2111-2130 | None:intergenic | 15.0% |
| !! | AAATATCAGTTCAAATTTAT+CGG | - | tig0025353:3100-3119 | Msa1422240:intron | 15.0% |
| !!! | TTTCTATGCATATTTTATAA+TGG | - | tig0025353:3126-3145 | Msa1422240:intron | 15.0% |
| !!! | ATCTTTTCAAAAATAATGTT+TGG | - | tig0025353:3641-3660 | Msa1422240:intron | 15.0% |
| !! | ATCAGAAATAAATATAATTG+AGG | + | tig0025353:3782-3801 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCTTTCTCTTC+AGG | + | tig0025353:247-266 | None:intergenic | 20.0% |
| !! | AAAGATTAAGTTAAGGAAAA+AGG | + | tig0025353:953-972 | None:intergenic | 20.0% |
| !! | CAAACATAAAGATTAAGTTA+AGG | + | tig0025353:960-979 | None:intergenic | 20.0% |
| !! | GCAAAAAAGCTTATTAAAAA+TGG | + | tig0025353:993-1012 | None:intergenic | 20.0% |
| !!! | ACAAATCTAAAATCAATAGT+GGG | + | tig0025353:1932-1951 | None:intergenic | 20.0% |
| !!! | AACAAATCTAAAATCAATAG+TGG | + | tig0025353:1933-1952 | None:intergenic | 20.0% |
| !!! | AATAATATGTTTTACACCTA+AGG | - | tig0025353:2394-2413 | Msa1422240:intron | 20.0% |
| !!! | ATAATATGTTTTACACCTAA+GGG | - | tig0025353:2395-2414 | Msa1422240:intron | 20.0% |
| !! | GTTAAAAATTTGAGAACTAT+TGG | - | tig0025353:2719-2738 | Msa1422240:intron | 20.0% |
| !! | GAAAAGATCTTGATTAATAA+AGG | + | tig0025353:3629-3648 | None:intergenic | 20.0% |
| !! | TGTTTAACTGTATTCTTAAA+TGG | - | tig0025353:3957-3976 | Msa1422240:intron | 20.0% |
| !!! | TTTTTTTCTCCTCTTTTTTT+GGG | - | tig0025353:4248-4267 | Msa1422240:CDS | 20.0% |
| !! | GTGAAAAAAAATCAATTCTT+AGG | + | tig0025353:4384-4403 | None:intergenic | 20.0% |
| !! | TTAACATGAAACAATCAATA+AGG | + | tig0025353:4451-4470 | None:intergenic | 20.0% |
| !! | TTGATTGTTTCATGTTAATT+TGG | - | tig0025353:4453-4472 | Msa1422240:CDS | 20.0% |
| !!! | GTTTGTATTTTTACTATATC+AGG | - | tig0025353:4512-4531 | Msa1422240:CDS | 20.0% |
| ! | TGAGAATTTGAGAATTTCTA+GGG | + | tig0025353:285-304 | None:intergenic | 25.0% |
| ! | TTGAGAATTTGAGAATTTCT+AGG | + | tig0025353:286-305 | None:intergenic | 25.0% |
| ! | GCTATATAAAGTAGTAAACA+GGG | + | tig0025353:1166-1185 | None:intergenic | 25.0% |
| ! | AGCTATATAAAGTAGTAAAC+AGG | + | tig0025353:1167-1186 | None:intergenic | 25.0% |
| ! | GCTGTTAAATAAATTGGATT+TGG | + | tig0025353:1251-1270 | None:intergenic | 25.0% |
| !! | CATTGTGCTGTTAAATAAAT+TGG | + | tig0025353:1257-1276 | None:intergenic | 25.0% |
| ! | GAACAAAATTTCGGTAAATA+CGG | + | tig0025353:1574-1593 | None:intergenic | 25.0% |
| ! | ATATCCGATTCTGTATAAAA+GGG | - | tig0025353:2058-2077 | Msa1422240:intron | 25.0% |
| ! | GAAAAAAAATGAGAGAAAGT+TGG | - | tig0025353:2805-2824 | Msa1422240:intron | 25.0% |
| ! | ACATTAATTAATTGGCTGAA+CGG | - | tig0025353:2884-2903 | Msa1422240:intron | 25.0% |
| !!! | CAAGTATTACTCTGTTTTTA+CGG | - | tig0025353:2922-2941 | Msa1422240:intron | 25.0% |
| !! | AATTTTGCTTGAATTCAGTT+AGG | - | tig0025353:2954-2973 | Msa1422240:intron | 25.0% |
| !!! | TGAATTTTAATGTGAATTGC+AGG | - | tig0025353:3150-3169 | Msa1422240:intron | 25.0% |
| ! | TAAGCCAAGAAGAAAAAAAA+AGG | + | tig0025353:3271-3290 | None:intergenic | 25.0% |
| ! | TTATATGATCTGACATAGTT+AGG | - | tig0025353:3288-3307 | Msa1422240:intron | 25.0% |
| ! | TTTAATATTTGCATACAGCT+TGG | - | tig0025353:3427-3446 | Msa1422240:intron | 25.0% |
| !! | CTTTTCAAAAAGTAATTGAG+AGG | + | tig0025353:3569-3588 | None:intergenic | 25.0% |
| ! | TAACTTTGATAAGTTTGATG+TGG | - | tig0025353:4195-4214 | Msa1422240:CDS | 25.0% |
| !!! | CTTTTTTTCTCCTCTTTTTT+TGG | - | tig0025353:4247-4266 | Msa1422240:CDS | 25.0% |
| !!! | TTTTTTCTCCTCTTTTTTTG+GGG | - | tig0025353:4249-4268 | Msa1422240:CDS | 25.0% |
| ! | ATACTTCAACATCTTTAAGT+TGG | - | tig0025353:4350-4369 | Msa1422240:CDS | 25.0% |
| ! | ATGAAACAATCAATAAGGAT+GGG | + | tig0025353:4446-4465 | None:intergenic | 25.0% |
| !! | TGAATTTTATGATGCAATGT+CGG | - | tig0025353:4714-4733 | Msa1422240:CDS | 25.0% |
| ! | TAGTAGTATTAGATTGAACT+AGG | + | tig0025353:4819-4838 | None:intergenic | 25.0% |
| !! | AAGGAAATTACTTTGGAGTT+AGG | + | tig0025353:210-229 | None:intergenic | 30.0% |
| GAGAGAAGAAGAATTATCAA+TGG | - | tig0025353:329-348 | Msa1422240:CDS | 30.0% | |
| !!! | TGTGAAAGTGTTTTTAGCTT+AGG | - | tig0025353:1041-1060 | Msa1422240:intron | 30.0% |
| AATACAACATACCACTTGAT+GGG | - | tig0025353:1210-1229 | Msa1422240:intron | 30.0% | |
| ! | CACTGTTAACTAGTTTACTT+AGG | + | tig0025353:1318-1337 | None:intergenic | 30.0% |
| ! | AATAGCAAAATCGATTCCAT+AGG | - | tig0025353:1347-1366 | Msa1422240:intron | 30.0% |
| !!! | ACATCCCAATGTTTTTTAAG+AGG | - | tig0025353:1721-1740 | Msa1422240:CDS | 30.0% |
| !!! | CATCCCAATGTTTTTTAAGA+GGG | - | tig0025353:1722-1741 | Msa1422240:CDS | 30.0% |
| AGTCCCTCTTAAAAAACATT+GGG | + | tig0025353:1728-1747 | None:intergenic | 30.0% | |
| GATATCCGATTCTGTATAAA+AGG | - | tig0025353:2057-2076 | Msa1422240:intron | 30.0% | |
| TGCATCAGCATATAAATTAC+TGG | + | tig0025353:2274-2293 | None:intergenic | 30.0% | |
| TTATATGCTGATGCAAAACT+TGG | - | tig0025353:2279-2298 | Msa1422240:intron | 30.0% | |
| TCGTATAGATCTCTTCTAAA+AGG | - | tig0025353:2310-2329 | Msa1422240:intron | 30.0% | |
| TCTATGTTTCCTATTCCTTA+AGG | + | tig0025353:2530-2549 | None:intergenic | 30.0% | |
| ! | ACTATTGGTCAAGAAAGTTT+TGG | - | tig0025353:2734-2753 | Msa1422240:intron | 30.0% |
| CATTAATTAATTGGCTGAAC+GGG | - | tig0025353:2885-2904 | Msa1422240:intron | 30.0% | |
| ATTTAGGGAGAAGAAAGAAA+CGG | - | tig0025353:3175-3194 | Msa1422240:intron | 30.0% | |
| CCAAGAAGAAAAAAAAAGGA+GGG | + | tig0025353:3267-3286 | None:intergenic | 30.0% | |
| CTGTAATTATCATAGCACAT+TGG | + | tig0025353:3340-3359 | None:intergenic | 30.0% | |
| ATAATTACAGATGCCCTTAA+AGG | - | tig0025353:3350-3369 | Msa1422240:intron | 30.0% | |
| TATGAATTCTTCTCAAAAGC+TGG | - | tig0025353:3390-3409 | Msa1422240:intron | 30.0% | |
| !!! | TTGGCCAAACTCTTATTTTA+CGG | - | tig0025353:3660-3679 | Msa1422240:intron | 30.0% |
| TTCTCCGTAAAATAAGAGTT+TGG | + | tig0025353:3667-3686 | None:intergenic | 30.0% | |
| ! | AAGAGAAGTAAAAAGCATGT+TGG | - | tig0025353:3685-3704 | Msa1422240:intron | 30.0% |
| ! | AGAGAAGTAAAAAGCATGTT+GGG | - | tig0025353:3686-3705 | Msa1422240:intron | 30.0% |
| TAGAATTGCGATAATGATGA+GGG | - | tig0025353:3982-4001 | Msa1422240:intron | 30.0% | |
| ATTGATTAAACATGAGTGCA+AGG | + | tig0025353:4020-4039 | None:intergenic | 30.0% | |
| !! | ACATAATCCTGGTTTTCTTT+TGG | - | tig0025353:4065-4084 | Msa1422240:intron | 30.0% |
| TCAAGTGATATAAACCGAAA+AGG | + | tig0025353:4157-4176 | None:intergenic | 30.0% | |
| TATATCACTTGAACTGGTTA+TGG | - | tig0025353:4165-4184 | Msa1422240:intron | 30.0% | |
| ATATCACTTGAACTGGTTAT+GGG | - | tig0025353:4166-4185 | Msa1422240:intron | 30.0% | |
| GAGGAGAAAAAAAGAAGAAA+GGG | + | tig0025353:4241-4260 | None:intergenic | 30.0% | |
| AGAGGAGAAAAAAAGAAGAA+AGG | + | tig0025353:4242-4261 | None:intergenic | 30.0% | |
| !! | GTTTGTTTGGCTCTTATAAT+TGG | - | tig0025353:4309-4328 | Msa1422240:CDS | 30.0% |
| ACATAGTGAAGATGAATTTC+CGG | - | tig0025353:4408-4427 | Msa1422240:CDS | 30.0% | |
| CATGAAACAATCAATAAGGA+TGG | + | tig0025353:4447-4466 | None:intergenic | 30.0% | |
| GTTCAATCTAATACTACTAC+CGG | - | tig0025353:4820-4839 | Msa1422240:five_prime_UTR | 30.0% | |
| !!! | TTTCTAGGGTTTTGCGATTT+GGG | + | tig0025353:271-290 | None:intergenic | 35.0% |
| !!! | ATTTCTAGGGTTTTGCGATT+TGG | + | tig0025353:272-291 | None:intergenic | 35.0% |
| ATTTCGAAATGAGAGATAGC+CGG | - | tig0025353:922-941 | Msa1422240:intron | 35.0% | |
| !! | TAGGTTTAGTTGATAGCATG+TGG | - | tig0025353:1060-1079 | Msa1422240:intron | 35.0% |
| TTTCACATGCATCTTATAGG+TGG | + | tig0025353:1143-1162 | None:intergenic | 35.0% | |
| CAATACAACATACCACTTGA+TGG | - | tig0025353:1209-1228 | Msa1422240:intron | 35.0% | |
| TTGTAGAGCAAATGAACCTA+TGG | + | tig0025353:1366-1385 | None:intergenic | 35.0% | |
| TGTGACTGTGCATTTAACAA+GGG | + | tig0025353:1415-1434 | None:intergenic | 35.0% | |
| CATTGTCTGAGGAATATGTA+TGG | - | tig0025353:1500-1519 | Msa1422240:intron | 35.0% | |
| CAAACAAAGATTGCAAACAG+AGG | - | tig0025353:1538-1557 | Msa1422240:intron | 35.0% | |
| TGAGGCAGAGAACAAAATTT+CGG | + | tig0025353:1583-1602 | None:intergenic | 35.0% | |
| AGTAATTGAGTTTGCAACGA+GGG | - | tig0025353:1602-1621 | Msa1422240:intron | 35.0% | |
| CAGTCCCTCTTAAAAAACAT+TGG | + | tig0025353:1729-1748 | None:intergenic | 35.0% | |
| !!! | CAATGTTTTTTAAGAGGGAC+TGG | - | tig0025353:1727-1746 | Msa1422240:CDS | 35.0% |
| !! | TAAAATCAATAGTGGGTGCA+TGG | + | tig0025353:1925-1944 | None:intergenic | 35.0% |
| CAAATAAAGAGACTGCTTGA+TGG | + | tig0025353:1978-1997 | None:intergenic | 35.0% | |
| ! | ACCTCCCTTTTATACAGAAT+CGG | + | tig0025353:2065-2084 | None:intergenic | 35.0% |
| GTGGATGAAATAATCAGTAC+AGG | + | tig0025353:2092-2111 | None:intergenic | 35.0% | |
| !! | CTTCTTGGTTTTCTGCTATT+GGG | + | tig0025353:2177-2196 | None:intergenic | 35.0% |
| CAATAGCAGAAAACCAAGAA+GGG | - | tig0025353:2176-2195 | Msa1422240:intron | 35.0% | |
| ! | TCTCTTCTAAAAGGTGATCT+AGG | - | tig0025353:2319-2338 | Msa1422240:intron | 35.0% |
| TGTTACAGAAACTTTCCCTT+AGG | + | tig0025353:2413-2432 | None:intergenic | 35.0% | |
| TACTTTGTTAAAGGAACCCA+CGG | + | tig0025353:2594-2613 | None:intergenic | 35.0% | |
| TGGGTTCCTTTAACAAAGTA+GGG | - | tig0025353:2594-2613 | Msa1422240:intron | 35.0% | |
| GAAAGTTGGAAGTGAGAATT+TGG | - | tig0025353:2819-2838 | Msa1422240:intron | 35.0% | |
| ATTTGGAAGAATCTTGAGTC+TGG | - | tig0025353:2836-2855 | Msa1422240:intron | 35.0% | |
| ATGTGAATTGCAGGAGATTT+AGG | - | tig0025353:3159-3178 | Msa1422240:intron | 35.0% | |
| TGTGAATTGCAGGAGATTTA+GGG | - | tig0025353:3160-3179 | Msa1422240:intron | 35.0% | |
| !!! | AAGAACTGTTTTTGCCTATC+AGG | - | tig0025353:3229-3248 | Msa1422240:intron | 35.0% |
| !!! | CCCTCCTTTTTTTTTCTTCT+TGG | - | tig0025353:3264-3283 | Msa1422240:intron | 35.0% |
| GCCAAGAAGAAAAAAAAAGG+AGG | + | tig0025353:3268-3287 | None:intergenic | 35.0% | |
| ACATTGGCAATAATCAGAAC+AGG | + | tig0025353:3324-3343 | None:intergenic | 35.0% | |
| ! | CAAACAACTATAGCTCTGTT+TGG | + | tig0025353:3712-3731 | None:intergenic | 35.0% |
| CAAACAGAGCTATAGTTGTT+TGG | - | tig0025353:3710-3729 | Msa1422240:intron | 35.0% | |
| TTCTGATGTACTTCATTTCC+AGG | - | tig0025353:3795-3814 | Msa1422240:intron | 35.0% | |
| CTAGAATTGCGATAATGATG+AGG | - | tig0025353:3981-4000 | Msa1422240:intron | 35.0% | |
| CAACATAGAGGAAGCAAATT+GGG | + | tig0025353:4097-4116 | None:intergenic | 35.0% | |
| TCAACATAGAGGAAGCAAAT+TGG | + | tig0025353:4098-4117 | None:intergenic | 35.0% | |
| ! | CTTATGCTGTTGAACCTTTT+CGG | - | tig0025353:4140-4159 | Msa1422240:intron | 35.0% |
| TCGGTTTATATCACTTGAAC+TGG | - | tig0025353:4159-4178 | Msa1422240:intron | 35.0% | |
| TATCACTTGAACTGGTTATG+GGG | - | tig0025353:4167-4186 | Msa1422240:intron | 35.0% | |
| AAAAAGAAGAAAGGGAATGC+AGG | + | tig0025353:4233-4252 | None:intergenic | 35.0% | |
| AAACAATCAATAAGGATGGG+AGG | + | tig0025353:4443-4462 | None:intergenic | 35.0% | |
| ATACACCAAAAGATACACTC+TGG | - | tig0025353:4560-4579 | Msa1422240:CDS | 35.0% | |
| AAGCATAGCAAAGAGATGTA+GGG | + | tig0025353:4615-4634 | None:intergenic | 35.0% | |
| AAAGCATAGCAAAGAGATGT+AGG | + | tig0025353:4616-4635 | None:intergenic | 35.0% | |
| ! | TCAGAAGGTTTTACCATTAC+AGG | + | tig0025353:4784-4803 | None:intergenic | 35.0% |
| TGTAATGGTAAAACCTTCTG+AGG | - | tig0025353:4783-4802 | Msa1422240:exon | 35.0% | |
| TCTCAGTCATATTGAAGTGA+AGG | + | tig0025353:4903-4922 | None:intergenic | 35.0% | |
| AGAGGGGAAGGAAATTACTT+TGG | + | tig0025353:217-236 | None:intergenic | 40.0% | |
| TCTCTTCAGGCTTAGATAGA+GGG | + | tig0025353:234-253 | None:intergenic | 40.0% | |
| TTCTCTTCAGGCTTAGATAG+AGG | + | tig0025353:235-254 | None:intergenic | 40.0% | |
| !!! | TTCTAGGGTTTTGCGATTTG+GGG | + | tig0025353:270-289 | None:intergenic | 40.0% |
| TTTCGACGAGTACGAATACT+TGG | - | tig0025353:353-372 | Msa1422240:CDS | 40.0% | |
| AAGCGCGATGAAATTGAAGA+TGG | - | tig0025353:453-472 | Msa1422240:intron | 40.0% | |
| ATAGGGACAGAGAGAAAGAT+AGG | - | tig0025353:676-695 | Msa1422240:intron | 40.0% | |
| AGAGAAAGATAGGAGAGAGA+GGG | - | tig0025353:686-705 | Msa1422240:intron | 40.0% | |
| AGAGAGATAGGGAGATTGAA+AGG | - | tig0025353:790-809 | Msa1422240:intron | 40.0% | |
| GAGAGATAGGGAGATTGAAA+GGG | - | tig0025353:791-810 | Msa1422240:intron | 40.0% | |
| TTGAAAGGGAAGAGAGAGAA+AGG | - | tig0025353:805-824 | Msa1422240:intron | 40.0% | |
| !! | GTTAAGGAAAAAGGCGTTAC+CGG | + | tig0025353:944-963 | None:intergenic | 40.0% |
| GGGTTTCACATGCATCTTAT+AGG | + | tig0025353:1146-1165 | None:intergenic | 40.0% | |
| TTGTATTGTTCCAAGTGCTC+AGG | + | tig0025353:1197-1216 | None:intergenic | 40.0% | |
| TTTGCATCTAACCCATCAAG+TGG | + | tig0025353:1224-1243 | None:intergenic | 40.0% | |
| !! | CTTGATGGGTTAGATGCAAA+AGG | - | tig0025353:1224-1243 | Msa1422240:intron | 40.0% |
| ATTTGCTCTACAACCAACCA+CGG | - | tig0025353:1373-1392 | Msa1422240:intron | 40.0% | |
| GTGTGACTGTGCATTTAACA+AGG | + | tig0025353:1416-1435 | None:intergenic | 40.0% | |
| !! | GACAACTTGAGCATTGACTA+GGG | + | tig0025353:1477-1496 | None:intergenic | 40.0% |
| !! | TGACAACTTGAGCATTGACT+AGG | + | tig0025353:1478-1497 | None:intergenic | 40.0% |
| AAGTTGTCACACATTGTCTG+AGG | - | tig0025353:1489-1508 | Msa1422240:intron | 40.0% | |
| CGTTGCAAACTCAATTACTG+AGG | + | tig0025353:1601-1620 | None:intergenic | 40.0% | |
| CAGTAATTGAGTTTGCAACG+AGG | - | tig0025353:1601-1620 | Msa1422240:intron | 40.0% | |
| CATTTACTTTGGCGCAATTC+TGG | + | tig0025353:1652-1671 | None:intergenic | 40.0% | |
| TCAGGACACTGCATTTACTT+TGG | + | tig0025353:1663-1682 | None:intergenic | 40.0% | |
| ! | AAGTTGATCTCCAGTCATCT+AGG | - | tig0025353:1682-1701 | Msa1422240:intron | 40.0% |
| AGTTGATCTCCAGTCATCTA+GGG | - | tig0025353:1683-1702 | Msa1422240:intron | 40.0% | |
| AAAACATTGGGATGTAGCCT+GGG | + | tig0025353:1716-1735 | None:intergenic | 40.0% | |
| AAAAACATTGGGATGTAGCC+TGG | + | tig0025353:1717-1736 | None:intergenic | 40.0% | |
| GAAAGGGACTTATCAGTCAT+GGG | + | tig0025353:1790-1809 | None:intergenic | 40.0% | |
| TGAAAGGGACTTATCAGTCA+TGG | + | tig0025353:1791-1810 | None:intergenic | 40.0% | |
| TTTCACTACAAACCGATGTC+TGG | - | tig0025353:1878-1897 | Msa1422240:intron | 40.0% | |
| TCCGATTCTGTATAAAAGGG+AGG | - | tig0025353:2061-2080 | Msa1422240:intron | 40.0% | |
| TTGATGTGAAGTGACCAAAG+TGG | - | tig0025353:2141-2160 | Msa1422240:intron | 40.0% | |
| TGATGTGAAGTGACCAAAGT+GGG | - | tig0025353:2142-2161 | Msa1422240:intron | 40.0% | |
| !! | CCTTCTTGGTTTTCTGCTAT+TGG | + | tig0025353:2178-2197 | None:intergenic | 40.0% |
| CCAATAGCAGAAAACCAAGA+AGG | - | tig0025353:2175-2194 | Msa1422240:intron | 40.0% | |
| AGACTTATTACTGCCCTTCT+TGG | + | tig0025353:2192-2211 | None:intergenic | 40.0% | |
| TCAAACAAGCATTCAGAGCT+TGG | + | tig0025353:2225-2244 | None:intergenic | 40.0% | |
| !! | ACTGGTTTGTAGATTGCACA+AGG | + | tig0025353:2256-2275 | None:intergenic | 40.0% |
| TATGCTGATGCAAAACTTGG+TGG | - | tig0025353:2282-2301 | Msa1422240:intron | 40.0% | |
| !! | GATGTGCCACTCTTTTAAGA+TGG | - | tig0025353:2353-2372 | Msa1422240:intron | 40.0% |
| CTACTGCCATCTTAAAAGAG+TGG | + | tig0025353:2362-2381 | None:intergenic | 40.0% | |
| CAAAGGACTTCATCAGCAAT+AGG | + | tig0025353:2442-2461 | None:intergenic | 40.0% | |
| CTATTGCTGATGAAGTCCTT+TGG | - | tig0025353:2440-2459 | Msa1422240:intron | 40.0% | |
| ! | AAGTCCTTTGGAAACTAACC+TGG | - | tig0025353:2452-2471 | Msa1422240:intron | 40.0% |
| AACTAACCTGGCTGCATTAA+TGG | - | tig0025353:2464-2483 | Msa1422240:intron | 40.0% | |
| TATTCCTTAAGGCTGCAAGT+GGG | + | tig0025353:2519-2538 | None:intergenic | 40.0% | |
| GTGGGTTCCTTTAACAAAGT+AGG | - | tig0025353:2593-2612 | Msa1422240:intron | 40.0% | |
| ATCGGTCCCTACTTTGTTAA+AGG | + | tig0025353:2603-2622 | None:intergenic | 40.0% | |
| AATTAATTGGCTGAACGGGA+TGG | - | tig0025353:2889-2908 | Msa1422240:intron | 40.0% | |
| CTCTCAGTAACACTATCACT+TGG | - | tig0025353:2997-3016 | Msa1422240:intron | 40.0% | |
| ACAGTTCTTTGATCCCTTTC+TGG | + | tig0025353:3218-3237 | None:intergenic | 40.0% | |
| !! | TGCCTATCAGGTTAATTTGC+TGG | - | tig0025353:3241-3260 | Msa1422240:intron | 40.0% |
| TCCCTTTCTGTAGCCTTTAA+GGG | + | tig0025353:3366-3385 | None:intergenic | 40.0% | |
| ATCCCTTTCTGTAGCCTTTA+AGG | + | tig0025353:3367-3386 | None:intergenic | 40.0% | |
| ATTCTTCTCAAAAGCTGGCA+AGG | - | tig0025353:3395-3414 | Msa1422240:intron | 40.0% | |
| GATGCAAGACATTCACACTA+AGG | + | tig0025353:3738-3757 | None:intergenic | 40.0% | |
| ATGTTCGTCTGATCATGGAT+AGG | - | tig0025353:3824-3843 | Msa1422240:intron | 40.0% | |
| AGGAACTCAAGACGATCTAA+AGG | - | tig0025353:3844-3863 | Msa1422240:intron | 40.0% | |
| TCAAGACGATCTAAAGGAGT+TGG | - | tig0025353:3850-3869 | Msa1422240:intron | 40.0% | |
| CAAGACGATCTAAAGGAGTT+GGG | - | tig0025353:3851-3870 | Msa1422240:intron | 40.0% | |
| TTCATATGCGTGCACTATTG+TGG | - | tig0025353:3907-3926 | Msa1422240:intron | 40.0% | |
| CGTGCACTATTGTGGTATTA+GGG | - | tig0025353:3915-3934 | Msa1422240:intron | 40.0% | |
| CGATAATGATGAGGGATGAT+GGG | - | tig0025353:3990-4009 | Msa1422240:intron | 40.0% | |
| CAATTCATGCTGCATACTCA+AGG | - | tig0025353:4036-4055 | Msa1422240:intron | 40.0% | |
| CAAGGTAGATGACATAATCC+TGG | - | tig0025353:4054-4073 | Msa1422240:intron | 40.0% | |
| GAAAGGACCAAAAGAAAACC+AGG | + | tig0025353:4075-4094 | None:intergenic | 40.0% | |
| TAGAGGAAGCAAATTGGGAA+AGG | + | tig0025353:4092-4111 | None:intergenic | 40.0% | |
| !!! | TTTCTCCTCTTTTTTTGGGG+TGG | - | tig0025353:4252-4271 | Msa1422240:CDS | 40.0% |
| !!! | TTCTCCTCTTTTTTTGGGGT+GGG | - | tig0025353:4253-4272 | Msa1422240:CDS | 40.0% |
| !! | GCACATGGAATTGGTTTGTT+TGG | - | tig0025353:4296-4315 | Msa1422240:CDS | 40.0% |
| ! | CTCAACCAGAGTGTATCTTT+TGG | + | tig0025353:4568-4587 | None:intergenic | 40.0% |
| ! | GTTGATGCAAGTTTTCGATG+AGG | - | tig0025353:4679-4698 | Msa1422240:CDS | 40.0% |
| !! | TCTTCTAGGACAACCTGTAA+TGG | - | tig0025353:4768-4787 | Msa1422240:CDS | 40.0% |
| ! | CACATACAGTTTTCTGTCCA+CGG | + | tig0025353:4875-4894 | None:intergenic | 40.0% |
| GTGGACAGAAAACTGTATGT+GGG | - | tig0025353:4874-4893 | Msa1422240:five_prime_UTR | 40.0% | |
| TGGACAGAAAACTGTATGTG+GGG | - | tig0025353:4875-4894 | Msa1422240:five_prime_UTR | 40.0% | |
| CTCTTCAGGCTTAGATAGAG+GGG | + | tig0025353:233-252 | None:intergenic | 45.0% | |
| CGAATACTTGGAGAAGACAG+TGG | - | tig0025353:365-384 | Msa1422240:CDS | 45.0% | |
| AAAGCAGCGACAAAACCGAA+CGG | - | tig0025353:421-440 | Msa1422240:intron | 45.0% | |
| ! | AAGATGGCACTGAAGAGAAG+AGG | - | tig0025353:469-488 | Msa1422240:intron | 45.0% |
| AAGAGAAGAGGAGCAAGAGA+AGG | - | tig0025353:481-500 | Msa1422240:intron | 45.0% | |
| CAGAGATAGGGATAGGGATA+GGG | - | tig0025353:590-609 | Msa1422240:intron | 45.0% | |
| ATAGGGATAGGGATAGGGAT+AGG | - | tig0025353:595-614 | Msa1422240:intron | 45.0% | |
| TAGGGATAGGGATAGGGATA+GGG | - | tig0025353:596-615 | Msa1422240:intron | 45.0% | |
| GAGAGAAAGATAGGAGAGAG+AGG | - | tig0025353:685-704 | Msa1422240:intron | 45.0% | |
| AGAGGGAGAAAGAGAGAGAA+AGG | - | tig0025353:703-722 | Msa1422240:intron | 45.0% | |
| AAGAGAGAGAAAGGAGAGAG+AGG | - | tig0025353:712-731 | Msa1422240:intron | 45.0% | |
| AGAGAGAGAAAGGAGAGAGA+GGG | - | tig0025353:713-732 | Msa1422240:intron | 45.0% | |
| AGAAAGGAGAGAGAGGGAAA+GGG | - | tig0025353:719-738 | Msa1422240:intron | 45.0% | |
| AGAAGGAAAGGGAGAGAGAA+AGG | - | tig0025353:742-761 | Msa1422240:intron | 45.0% | |
| AAAGGGAGAGAGAAAGGTCT+CGG | - | tig0025353:748-767 | Msa1422240:intron | 45.0% | |
| !! | AGAGTCGTTCTGAGAGAGAT+AGG | - | tig0025353:778-797 | Msa1422240:intron | 45.0% |
| !! | GAGTCGTTCTGAGAGAGATA+GGG | - | tig0025353:779-798 | Msa1422240:intron | 45.0% |
| GCTTTATCATCCTGAGCACT+TGG | - | tig0025353:1184-1203 | Msa1422240:intron | 45.0% | |
| !! | TGCAACGAGGGTTTGCTTTT+TGG | - | tig0025353:1614-1633 | Msa1422240:intron | 45.0% |
| GATGACTGGAGATCAACTTC+AGG | + | tig0025353:1681-1700 | None:intergenic | 45.0% | |
| !!! | GTTTTTTAAGAGGGACTGGC+TGG | - | tig0025353:1731-1750 | Msa1422240:CDS | 45.0% |
| AAGTCCCTTTCAGATACCTC+AGG | - | tig0025353:1799-1818 | Msa1422240:intron | 45.0% | |
| AGTCCCTTTCAGATACCTCA+GGG | - | tig0025353:1800-1819 | Msa1422240:intron | 45.0% | |
| ! | TCACCCTGAGGTATCTGAAA+GGG | + | tig0025353:1806-1825 | None:intergenic | 45.0% |
| ! | ATCACCCTGAGGTATCTGAA+AGG | + | tig0025353:1807-1826 | None:intergenic | 45.0% |
| AAGAACTGAAGATCACCCTG+AGG | + | tig0025353:1818-1837 | None:intergenic | 45.0% | |
| ATTACAACCCAGCCAGACAT+CGG | + | tig0025353:1893-1912 | None:intergenic | 45.0% | |
| ! | CTGATGCAAAACTTGGTGGT+GGG | - | tig0025353:2286-2305 | Msa1422240:intron | 45.0% |
| CTATTCCTTAAGGCTGCAAG+TGG | + | tig0025353:2520-2539 | None:intergenic | 45.0% | |
| CACTTGCAGCCTTAAGGAAT+AGG | - | tig0025353:2518-2537 | Msa1422240:intron | 45.0% | |
| ATAGGAAACATAGACCAGCG+TGG | - | tig0025353:2536-2555 | Msa1422240:intron | 45.0% | |
| TAACAAAGTAGGGACCGATC+AGG | - | tig0025353:2604-2623 | Msa1422240:intron | 45.0% | |
| AACAAAGTAGGGACCGATCA+GGG | - | tig0025353:2605-2624 | Msa1422240:intron | 45.0% | |
| ATCCAGACTAGAGCGAAGAA+TGG | + | tig0025353:2641-2660 | None:intergenic | 45.0% | |
| ATTCTTCGCTCTAGTCTGGA+TGG | - | tig0025353:2640-2659 | Msa1422240:intron | 45.0% | |
| GGCCAGCAAATTAACCTGAT+AGG | + | tig0025353:3246-3265 | None:intergenic | 45.0% | |
| TGCCCTTAAAGGCTACAGAA+AGG | - | tig0025353:3361-3380 | Msa1422240:intron | 45.0% | |
| GCCCTTAAAGGCTACAGAAA+GGG | - | tig0025353:3362-3381 | Msa1422240:intron | 45.0% | |
| GAGAGATGTTCGTCTGATCA+TGG | - | tig0025353:3819-3838 | Msa1422240:intron | 45.0% | |
| GCGTGCACTATTGTGGTATT+AGG | - | tig0025353:3914-3933 | Msa1422240:intron | 45.0% | |
| GCGATAATGATGAGGGATGA+TGG | - | tig0025353:3989-4008 | Msa1422240:intron | 45.0% | |
| GTGTGTGTACGTCAACATAG+AGG | + | tig0025353:4109-4128 | None:intergenic | 45.0% | |
| !!! | TCTCCTCTTTTTTTGGGGTG+GGG | - | tig0025353:4254-4273 | Msa1422240:CDS | 45.0% |
| TATCCCCACCCCAAAAAAAG+AGG | + | tig0025353:4260-4279 | None:intergenic | 45.0% | |
| GGATGAGATGCACATGGAAT+TGG | - | tig0025353:4287-4306 | Msa1422240:CDS | 45.0% | |
| ! | CAAGTTTTCGATGAGGTTGC+AGG | - | tig0025353:4686-4705 | Msa1422240:CDS | 45.0% |
| TAGAAGAAGTTGGCCAGAGA+GGG | + | tig0025353:4755-4774 | None:intergenic | 45.0% | |
| CAGGTTGTCCTAGAAGAAGT+TGG | + | tig0025353:4765-4784 | None:intergenic | 45.0% | |
| ! | AGGTTCTTTTCAGCCTCAGA+AGG | + | tig0025353:4799-4818 | None:intergenic | 45.0% |
| CGTGGACAGAAAACTGTATG+TGG | - | tig0025353:4873-4892 | Msa1422240:five_prime_UTR | 45.0% | |
| TCAGGCTTAGATAGAGGGGA+AGG | + | tig0025353:229-248 | None:intergenic | 50.0% | |
| ! | TCGTGATGATGACCGTGACA+AGG | - | tig0025353:551-570 | Msa1422240:intron | 50.0% |
| TCATCGGAGTGGCAGAGATA+GGG | - | tig0025353:578-597 | Msa1422240:intron | 50.0% | |
| GAGTGGCAGAGATAGGGATA+GGG | - | tig0025353:584-603 | Msa1422240:intron | 50.0% | |
| GCAGAGATAGGGATAGGGAT+AGG | - | tig0025353:589-608 | Msa1422240:intron | 50.0% | |
| GATAGGGATAGGGACAGAGA+CGG | - | tig0025353:606-625 | Msa1422240:intron | 50.0% | |
| TGAGAGAAGCAGCAGAGACA+GGG | - | tig0025353:629-648 | Msa1422240:intron | 50.0% | |
| ATAGGGAGAGGGAGAAGGAT+AGG | - | tig0025353:658-677 | Msa1422240:intron | 50.0% | |
| TAGGGAGAGGGAGAAGGATA+GGG | - | tig0025353:659-678 | Msa1422240:intron | 50.0% | |
| GAGAAAGGAGAGAGAGGGAA+AGG | - | tig0025353:718-737 | Msa1422240:intron | 50.0% | |
| AGAGGGAAAGGGAGAAGGAA+AGG | - | tig0025353:730-749 | Msa1422240:intron | 50.0% | |
| GAGGGAAAGGGAGAAGGAAA+GGG | - | tig0025353:731-750 | Msa1422240:intron | 50.0% | |
| GGGAAGAGAGAGAAAGGTCT+CGG | - | tig0025353:811-830 | Msa1422240:intron | 50.0% | |
| ! | TAAGCCGTTCTGAACGAGAC+AGG | - | tig0025353:841-860 | Msa1422240:intron | 50.0% |
| ! | AAGCCGTTCTGAACGAGACA+GGG | - | tig0025353:842-861 | Msa1422240:intron | 50.0% |
| TCTCCCTGTCTCGTTCAGAA+CGG | + | tig0025353:848-867 | None:intergenic | 50.0% | |
| AACGAGACAGGGAGAGAGAA+CGG | - | tig0025353:853-872 | Msa1422240:intron | 50.0% | |
| ! | ATCTCCAGTCATCTAGGGTC+TGG | - | tig0025353:1688-1707 | Msa1422240:intron | 50.0% |
| ! | TCTCCAGTCATCTAGGGTCT+GGG | - | tig0025353:1689-1708 | Msa1422240:intron | 50.0% |
| GCCTTTCCATGATTCTCGAG+TGG | - | tig0025353:1842-1861 | Msa1422240:intron | 50.0% | |
| GCCACTCGAGAATCATGGAA+AGG | + | tig0025353:1846-1865 | None:intergenic | 50.0% | |
| GTCATGCCACTCGAGAATCA+TGG | + | tig0025353:1851-1870 | None:intergenic | 50.0% | |
| ACTACAAACCGATGTCTGGC+TGG | - | tig0025353:1882-1901 | Msa1422240:intron | 50.0% | |
| CTACAAACCGATGTCTGGCT+GGG | - | tig0025353:1883-1902 | Msa1422240:intron | 50.0% | |
| GATGTCTGGCTGGGTTGTAA+TGG | - | tig0025353:1892-1911 | Msa1422240:CDS | 50.0% | |
| TGGGCAAGTATGACCCACTT+TGG | + | tig0025353:2158-2177 | None:intergenic | 50.0% | |
| ! | GCTGATGCAAAACTTGGTGG+TGG | - | tig0025353:2285-2304 | Msa1422240:intron | 50.0% |
| GGTGATCTAGGAATGACTGC+TGG | - | tig0025353:2331-2350 | Msa1422240:intron | 50.0% | |
| !! | GCAGCCAGGTTAGTTTCCAA+AGG | + | tig0025353:2459-2478 | None:intergenic | 50.0% |
| ACGAGACCATTAATGCAGCC+AGG | + | tig0025353:2473-2492 | None:intergenic | 50.0% | |
| GCTGCATTAATGGTCTCGTC+AGG | - | tig0025353:2474-2493 | Msa1422240:intron | 50.0% | |
| ATGACCCACTTGCAGCCTTA+AGG | - | tig0025353:2512-2531 | Msa1422240:intron | 50.0% | |
| ! | AAGTACTGCCAAGCAAGCCT+TGG | + | tig0025353:2567-2586 | None:intergenic | 50.0% |
| ! | AAGGCTTGCTTGGCAGTACT+TGG | - | tig0025353:2566-2585 | Msa1422240:intron | 50.0% |
| TTGGCAGTACTTGGTTCCGT+GGG | - | tig0025353:2575-2594 | Msa1422240:intron | 50.0% | |
| TGGCATTGCTCATCCCTGAT+CGG | + | tig0025353:2621-2640 | None:intergenic | 50.0% | |
| TGCCATTCTTCGCTCTAGTC+TGG | - | tig0025353:2636-2655 | Msa1422240:intron | 50.0% | |
| TCAGACGAACATCTCTCACC+TGG | + | tig0025353:3816-3835 | None:intergenic | 50.0% | |
| GTTGACGTACACACACAGTG+AGG | - | tig0025353:4113-4132 | Msa1422240:intron | 50.0% | |
| CCATGTGCATCTCATCCAAC+TGG | + | tig0025353:4284-4303 | None:intergenic | 50.0% | |
| CCAGTTGGATGAGATGCACA+TGG | - | tig0025353:4281-4300 | Msa1422240:CDS | 50.0% | |
| !! | TGATGCAATGTCGGTGCCAA+TGG | - | tig0025353:4723-4742 | Msa1422240:CDS | 50.0% |
| CTAGAAGAAGTTGGCCAGAG+AGG | + | tig0025353:4756-4775 | None:intergenic | 50.0% | |
| CTCTCTGGCCAACTTCTTCT+AGG | - | tig0025353:4754-4773 | Msa1422240:CDS | 50.0% | |
| AATACTACTACCGGAGCTGC+TGG | - | tig0025353:4829-4848 | Msa1422240:five_prime_UTR | 50.0% | |
| TTTCTGTCCACGGCTCCATA+TGG | + | tig0025353:4865-4884 | None:intergenic | 50.0% | |
| GGAGAAGACAGTGGAAGAGC+AGG | - | tig0025353:374-393 | Msa1422240:CDS | 55.0% | |
| GCGCTTTCTGTAGCTCCGTT+CGG | + | tig0025353:439-458 | None:intergenic | 55.0% | |
| AGGAGCAAGAGAAGGTCCAG+CGG | - | tig0025353:489-508 | Msa1422240:intron | 55.0% | |
| !! | ACCGTGACAAGGAGCGTCAT+CGG | - | tig0025353:562-581 | Msa1422240:intron | 55.0% |
| TCCGATGACGCTCCTTGTCA+CGG | + | tig0025353:566-585 | None:intergenic | 55.0% | |
| GTCATCGGAGTGGCAGAGAT+AGG | - | tig0025353:577-596 | Msa1422240:intron | 55.0% | |
| GGAGTGGCAGAGATAGGGAT+AGG | - | tig0025353:583-602 | Msa1422240:intron | 55.0% | |
| GTGAGAGAAGCAGCAGAGAC+AGG | - | tig0025353:628-647 | Msa1422240:intron | 55.0% | |
| AAGCAGCAGAGACAGGGACA+GGG | - | tig0025353:635-654 | Msa1422240:intron | 55.0% | |
| CAGAGACAGGGACAGGGATA+GGG | - | tig0025353:641-660 | Msa1422240:intron | 55.0% | |
| GAGAGAGAGGGAAAGGGAGA+AGG | - | tig0025353:725-744 | Msa1422240:intron | 55.0% | |
| ACGAGACAGGGAGAGAGAAC+GGG | - | tig0025353:854-873 | Msa1422240:intron | 55.0% | |
| GAGAACGGGAGGAGAGAGAT+AGG | - | tig0025353:868-887 | Msa1422240:intron | 55.0% | |
| AGGAGAGAGATAGGTCTCGC+AGG | - | tig0025353:877-896 | Msa1422240:intron | 55.0% | |
| !! | ACCAACCACGGCTGGTTTCA+TGG | - | tig0025353:1385-1404 | Msa1422240:intron | 55.0% |
| ACCATGAAACCAGCCGTGGT+TGG | + | tig0025353:1389-1408 | None:intergenic | 55.0% | |
| GTACACCATGAAACCAGCCG+TGG | + | tig0025353:1393-1412 | None:intergenic | 55.0% | |
| ! | CTCCAGTCATCTAGGGTCTG+GGG | - | tig0025353:1690-1709 | Msa1422240:intron | 55.0% |
| GCTGGCTGAAATCAGCTGTC+TGG | - | tig0025353:1749-1768 | Msa1422240:CDS | 55.0% | |
| ! | TGGTTCTGCCAAGGCTTGCT+TGG | - | tig0025353:2556-2575 | Msa1422240:intron | 55.0% |
| CTTGGCAGTACTTGGTTCCG+TGG | - | tig0025353:2574-2593 | Msa1422240:intron | 55.0% | |
| CGCTCTAGTCTGGATGGTTG+TGG | - | tig0025353:2646-2665 | Msa1422240:intron | 55.0% | |
| GAAAGAAACGGTCGAGCCTG+AGG | - | tig0025353:3187-3206 | Msa1422240:intron | 55.0% | |
| AGCCTGAGGCAGATCCAGAA+AGG | - | tig0025353:3201-3220 | Msa1422240:intron | 55.0% | |
| GCCTGAGGCAGATCCAGAAA+GGG | - | tig0025353:3202-3221 | Msa1422240:intron | 55.0% | |
| TCCCTTTCTGGATCTGCCTC+AGG | + | tig0025353:3206-3225 | None:intergenic | 55.0% | |
| GGATGGGAGGATTAAGCAGC+CGG | + | tig0025353:4430-4449 | None:intergenic | 55.0% | |
| CCAGAGAGGGCAATTGCCAT+TGG | + | tig0025353:4742-4761 | None:intergenic | 55.0% | |
| CCAATGGCAATTGCCCTCTC+TGG | - | tig0025353:4739-4758 | Msa1422240:CDS | 55.0% | |
| GCTGGTGTGGTAGGACCATA+TGG | - | tig0025353:4847-4866 | Msa1422240:five_prime_UTR | 55.0% | |
| GACTGAGAGCCAGTTGAGAG+AGG | - | tig0025353:4915-4934 | Msa1422240:five_prime_UTR | 55.0% | |
| AAGAGAAGGTCCAGCGGCGA+TGG | - | tig0025353:495-514 | Msa1422240:intron | 60.0% | |
| ACGACGAGCGTGTCTCGAAG+AGG | - | tig0025353:520-539 | Msa1422240:intron | 60.0% | |
| CGACGAGCGTGTCTCGAAGA+GGG | - | tig0025353:521-540 | Msa1422240:intron | 60.0% | |
| !! | GACAAGGAGCGTCATCGGAG+TGG | - | tig0025353:567-586 | Msa1422240:intron | 60.0% |
| GAAGCAGCAGAGACAGGGAC+AGG | - | tig0025353:634-653 | Msa1422240:intron | 60.0% | |
| GCAGAGACAGGGACAGGGAT+AGG | - | tig0025353:640-659 | Msa1422240:intron | 60.0% | |
| ACAGGGACAGGGATAGGGAG+AGG | - | tig0025353:646-665 | Msa1422240:intron | 60.0% | |
| CAGGGACAGGGATAGGGAGA+GGG | - | tig0025353:647-666 | Msa1422240:intron | 60.0% | |
| CAGGGATAGGGAGAGGGAGA+AGG | - | tig0025353:653-672 | Msa1422240:intron | 60.0% | |
| GGGAGAGAGAAAGGTCTCGG+AGG | - | tig0025353:751-770 | Msa1422240:intron | 60.0% | |
| AGACAGGGAGAGAGAACGGG+AGG | - | tig0025353:857-876 | Msa1422240:intron | 60.0% | |
| GCTCTACAACCAACCACGGC+TGG | - | tig0025353:1377-1396 | Msa1422240:intron | 60.0% | |
| ! | AGACCAGCGTGGTTCTGCCA+AGG | - | tig0025353:2547-2566 | Msa1422240:intron | 60.0% |
| AAGCCTTGGCAGAACCACGC+TGG | + | tig0025353:2553-2572 | None:intergenic | 60.0% | |
| TTGGGGTGGGGATAGCCAGT+TGG | - | tig0025353:4266-4285 | Msa1422240:CDS | 60.0% | |
| TACTACCGGAGCTGCTGGTG+TGG | - | tig0025353:4834-4853 | Msa1422240:five_prime_UTR | 60.0% | |
| TCCTACCACACCAGCAGCTC+CGG | + | tig0025353:4842-4861 | None:intergenic | 60.0% | |
| GGTAGGACCATATGGAGCCG+TGG | - | tig0025353:4855-4874 | Msa1422240:five_prime_UTR | 60.0% | |
| GGCCCCAGACCCTAGATGAC+TGG | + | tig0025353:1695-1714 | None:intergenic | 65.0% | |
| ! | TCATCTAGGGTCTGGGGCCC+AGG | - | tig0025353:1696-1715 | Msa1422240:intron | 65.0% |
| ACCGGAGCTGCTGGTGTGGT+AGG | - | tig0025353:4838-4857 | Msa1422240:five_prime_UTR | 65.0% | |
| CTCGTCGTCGCCATCGCCGC+TGG | + | tig0025353:508-527 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025353 | gene | 192 | 4945 | 192 | ID=Msa1422240;Name=Msa1422240 |
| tig0025353 | mRNA | 192 | 4945 | 192 | ID=Msa1422240-mRNA-1;Parent=Msa1422240;Name=Msa1422240-mRNA-1;_AED=0.22;_eAED=0.22;_QI=156|1|0.8|1|1|1|5|0|341 |
| tig0025353 | exon | 192 | 429 | 192 | ID=Msa1422240-mRNA-1:exon:2482;Parent=Msa1422240-mRNA-1 |
| tig0025353 | exon | 1265 | 1320 | 1265 | ID=Msa1422240-mRNA-1:exon:2481;Parent=Msa1422240-mRNA-1 |
| tig0025353 | exon | 1721 | 1777 | 1721 | ID=Msa1422240-mRNA-1:exon:2480;Parent=Msa1422240-mRNA-1 |
| tig0025353 | exon | 1887 | 1965 | 1887 | ID=Msa1422240-mRNA-1:exon:2479;Parent=Msa1422240-mRNA-1 |
| tig0025353 | exon | 4194 | 4945 | 4194 | ID=Msa1422240-mRNA-1:exon:2478;Parent=Msa1422240-mRNA-1 |
| tig0025353 | five_prime_UTR | 4790 | 4945 | 4790 | ID=Msa1422240-mRNA-1:five_prime_utr;Parent=Msa1422240-mRNA-1 |
| tig0025353 | CDS | 4194 | 4789 | 4194 | ID=Msa1422240-mRNA-1:cds;Parent=Msa1422240-mRNA-1 |
| tig0025353 | CDS | 1887 | 1965 | 1887 | ID=Msa1422240-mRNA-1:cds;Parent=Msa1422240-mRNA-1 |
| tig0025353 | CDS | 1721 | 1777 | 1721 | ID=Msa1422240-mRNA-1:cds;Parent=Msa1422240-mRNA-1 |
| tig0025353 | CDS | 1265 | 1320 | 1265 | ID=Msa1422240-mRNA-1:cds;Parent=Msa1422240-mRNA-1 |
| tig0025353 | CDS | 192 | 429 | 192 | ID=Msa1422240-mRNA-1:cds;Parent=Msa1422240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
