Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423260 | sp|Q9ZRA3|DAD1_PEA | 89.655 | 116 | 12 | 0 | 10 | 125 | 2 | 117 | 6.60e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423260 | G7KCB7 | 96.800 | 125 | 3 | 1 | 1 | 125 | 1 | 124 | 8.91e-81 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719990 | Msa1423260 | 0.988509 | 2.687668e-174 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423260 | MtrunA17_Chr5g0410671 | 96.800 | 125 | 3 | 1 | 1 | 125 | 1 | 124 | 1.72e-84 | 242 |
| Msa1423260 | MtrunA17_Chr3g0085841 | 92.035 | 113 | 9 | 0 | 13 | 125 | 3 | 115 | 6.19e-75 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423260 | AT1G32210.1 | 89.381 | 113 | 12 | 0 | 13 | 125 | 3 | 115 | 1.97e-72 | 212 |
| Msa1423260 | AT2G35520.3 | 87.500 | 112 | 14 | 0 | 14 | 125 | 4 | 115 | 1.57e-70 | 207 |
| Msa1423260 | AT2G35520.1 | 87.500 | 112 | 14 | 0 | 14 | 125 | 4 | 115 | 1.57e-70 | 207 |
| Msa1423260 | AT2G35520.2 | 86.726 | 113 | 14 | 1 | 14 | 125 | 4 | 116 | 9.41e-69 | 202 |
| Msa1423260 | AT1G32210.2 | 88.372 | 86 | 10 | 0 | 13 | 98 | 3 | 88 | 5.40e-51 | 157 |
Find 44 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+TGG | 0.079648 | tig0025526:-22087 | Msa1423260:CDS |
| ATGAACTTCCTTGGTTAAAT+TGG | 0.182066 | tig0025526:-21532 | Msa1423260:exon |
| ACATAAATTTAACTTTCTTT+TGG | 0.238898 | tig0025526:+21264 | None:intergenic |
| TCTTCATTCGACGGTTCTTT+TGG | 0.282200 | tig0025526:+21487 | None:intergenic |
| CCTTGTTCTCTTTATTGACT+TGG | 0.294683 | tig0025526:+21820 | None:intergenic |
| TTGTGTAGGGACTGCAGTTT+TGG | 0.309103 | tig0025526:-22055 | Msa1423260:CDS |
| AGAGTGAAGTGAATAGAAAA+TGG | 0.320614 | tig0025526:-24591 | Msa1423260:exon |
| TCTGAAATTCATCATTATAA+AGG | 0.325897 | tig0025526:+21323 | None:intergenic |
| CCAGAAAGGAAGGAGTTAAA+TGG | 0.336746 | tig0025526:+22087 | None:intergenic |
| AAGAAAGTTAAATTTATGTT+TGG | 0.343052 | tig0025526:-21260 | Msa1423260:three_prime_UTR |
| CATTAGTATTATTATATACC+TGG | 0.371004 | tig0025526:-21459 | Msa1423260:three_prime_UTR |
| AAGACCTGTTACGCGCTCTT+TGG | 0.386859 | tig0025526:-24514 | Msa1423260:CDS |
| CAGACCAAAGAGCGCGTAAC+AGG | 0.402996 | tig0025526:+24510 | None:intergenic |
| AATTCAACCTTGAGATTTGA+AGG | 0.427498 | tig0025526:+24473 | None:intergenic |
| CTGCAATGTGGTGCTTCACT+TGG | 0.443749 | tig0025526:-21560 | Msa1423260:CDS |
| ATTTATGTTTGGATCAATTG+TGG | 0.449053 | tig0025526:-21249 | Msa1423260:three_prime_UTR |
| TAAAGAGAACAAGGAATTCA+AGG | 0.449780 | tig0025526:-21811 | Msa1423260:intron |
| TTGGTGATCATGAACTTCCT+TGG | 0.461860 | tig0025526:-21541 | Msa1423260:CDS |
| TAATGAGCAGGTAGTTTACA+TGG | 0.468668 | tig0025526:-22127 | Msa1423260:intron |
| TCTGGAGTACTCTCTTGTGT+AGG | 0.476123 | tig0025526:-22069 | Msa1423260:CDS |
| CTGGAGTACTCTCTTGTGTA+GGG | 0.477751 | tig0025526:-22068 | Msa1423260:CDS |
| CAGGTCTTGTGCATCCTTTG+TGG | 0.478801 | tig0025526:+24529 | None:intergenic |
| CTTTATTGACTTGGATCCGT+AGG | 0.510758 | tig0025526:+21829 | None:intergenic |
| GCAGGTAGTTTACATGGCTC+TGG | 0.513030 | tig0025526:-22121 | Msa1423260:intron |
| CGCCACACCTTCAAATCTCA+AGG | 0.514404 | tig0025526:-24480 | Msa1423260:intron |
| GGTAGTTTACATGGCTCTGG+TGG | 0.533436 | tig0025526:-22118 | Msa1423260:CDS |
| AAATCAGCAAAAGCACGCTC+TGG | 0.534463 | tig0025526:+21589 | None:intergenic |
| ATTAGTATTATTATATACCT+GGG | 0.541597 | tig0025526:-21458 | Msa1423260:three_prime_UTR |
| AACCTTGAGATTTGAAGGTG+TGG | 0.550984 | tig0025526:+24478 | None:intergenic |
| CACAAGAGAGTACTCCAGAA+AGG | 0.561497 | tig0025526:+22073 | None:intergenic |
| AGAGAGTACTCCAGAAAGGA+AGG | 0.562124 | tig0025526:+22077 | None:intergenic |
| CCAAGTCAATAAAGAGAACA+AGG | 0.563011 | tig0025526:-21820 | Msa1423260:CDS |
| TTGGTTAAATTGGTTTCGTG+AGG | 0.564359 | tig0025526:-21522 | Msa1423260:exon |
| GTCTTGTGCATCCTTTGTGG+TGG | 0.567641 | tig0025526:+24532 | None:intergenic |
| ATCTTCTTCTTCCACCACAA+AGG | 0.572889 | tig0025526:-24543 | Msa1423260:CDS |
| TTATAATGATGAATTTCAGA+AGG | 0.589690 | tig0025526:-21320 | Msa1423260:three_prime_UTR |
| AATTTCAGAAGGTGTTCACA+TGG | 0.613310 | tig0025526:-21309 | Msa1423260:three_prime_UTR |
| CTTGAGATTTGAAGGTGTGG+CGG | 0.618708 | tig0025526:+24481 | None:intergenic |
| GTAGTTTACATGGCTCTGGT+GGG | 0.631716 | tig0025526:-22117 | Msa1423260:CDS |
| GAGAGCGGTGAAAACAGCGA+AGG | 0.649072 | tig0025526:+24356 | None:intergenic |
| GGGAAGAACCTGAAGGAGAG+CGG | 0.672467 | tig0025526:+24341 | None:intergenic |
| TCACGAAACCAATTTAACCA+AGG | 0.685768 | tig0025526:+21524 | None:intergenic |
| GATGAAGATGAAGAAGACGA+CGG | 0.700736 | tig0025526:+24563 | None:intergenic |
| ACAGTAACATGAGAAAACCC+AGG | 0.726384 | tig0025526:+21441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAAAAAGATTAATATA+TGG | + | tig0025526:21585-21604 | None:intergenic | 10.0% |
| !!! | TTTGCTCTTATTTATAATTA+TGG | - | tig0025526:21690-21709 | Msa1423260:intron | 15.0% |
| !!! | CATTTTGTTTAATTGTATTT+TGG | + | tig0025526:22575-22594 | None:intergenic | 15.0% |
| !! | AAAGTATATAAAAATTGATC+AGG | - | tig0025526:22801-22820 | Msa1423260:intron | 15.0% |
| !!! | TTTTAACGGTTTTAAAAAAA+TGG | - | tig0025526:23637-23656 | Msa1423260:intron | 15.0% |
| !!! | GCAAATAAGAAATTATTTTT+TGG | - | tig0025526:23659-23678 | Msa1423260:intron | 15.0% |
| !! | ATATATTCATACTGATAATT+TGG | - | tig0025526:24241-24260 | Msa1423260:intron | 15.0% |
| !! | ATTAGTATTATTATATACCT+GGG | - | tig0025526:24422-24441 | Msa1423260:intron | 15.0% |
| !!! | ACATAAATTTAACTTTCTTT+TGG | + | tig0025526:24619-24638 | None:intergenic | 15.0% |
| !! | AAGAAAGTTAAATTTATGTT+TGG | - | tig0025526:24620-24639 | Msa1423260:five_prime_UTR | 15.0% |
| !! | ATGAAGAAATGAAATGAAAA+GGG | + | tig0025526:21447-21466 | None:intergenic | 20.0% |
| !! | TATGAAGAAATGAAATGAAA+AGG | + | tig0025526:21448-21467 | None:intergenic | 20.0% |
| !! | AAGATAATTGCACTTAAATA+AGG | + | tig0025526:22139-22158 | None:intergenic | 20.0% |
| !!! | TAACAACATATTGTTTTGAA+TGG | + | tig0025526:22228-22247 | None:intergenic | 20.0% |
| !! | ATTCAAAACAATATGTTGTT+AGG | - | tig0025526:22227-22246 | Msa1423260:intron | 20.0% |
| !!! | TTTGTTTAATTGTATTTTGG+AGG | + | tig0025526:22572-22591 | None:intergenic | 20.0% |
| !!! | TAATGGCTCTAAATAATATT+GGG | + | tig0025526:22679-22698 | None:intergenic | 20.0% |
| !!! | TTAATGGCTCTAAATAATAT+TGG | + | tig0025526:22680-22699 | None:intergenic | 20.0% |
| !! | TCTGTATGTTTATACATTAA+TGG | + | tig0025526:22696-22715 | None:intergenic | 20.0% |
| !! | TAAAAGTAGAAGAATATCAT+TGG | + | tig0025526:22753-22772 | None:intergenic | 20.0% |
| !!! | ATGATATTCTTCTACTTTTA+TGG | - | tig0025526:22753-22772 | Msa1423260:intron | 20.0% |
| !!! | TGATATTCTTCTACTTTTAT+GGG | - | tig0025526:22754-22773 | Msa1423260:intron | 20.0% |
| !!! | TTTGATTAATTTTTTTCAGC+AGG | + | tig0025526:22781-22800 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTATGAAAAATCA+TGG | - | tig0025526:22948-22967 | Msa1423260:intron | 20.0% |
| !!! | AATTATTTTGTTGTAGTTCA+TGG | + | tig0025526:23422-23441 | None:intergenic | 20.0% |
| !!! | TAATGAGTTCTTACTTTTAA+CGG | - | tig0025526:23623-23642 | Msa1423260:intron | 20.0% |
| !!! | AAGAAATTATTTTTTGGTGA+AGG | - | tig0025526:23665-23684 | Msa1423260:intron | 20.0% |
| !! | CATTAGTATTATTATATACC+TGG | - | tig0025526:24421-24440 | Msa1423260:intron | 20.0% |
| !!! | TCTGAAATTCATCATTATAA+AGG | + | tig0025526:24560-24579 | None:intergenic | 20.0% |
| !! | TTATAATGATGAATTTCAGA+AGG | - | tig0025526:24560-24579 | Msa1423260:CDS | 20.0% |
| !! | TTTTCCTGATTATGACATTT+TGG | - | tig0025526:21723-21742 | Msa1423260:intron | 25.0% |
| ! | TTAACCAAAATGTCATAATC+AGG | + | tig0025526:21730-21749 | None:intergenic | 25.0% |
| ! | AGTTCATATTGAACAAAGAT+AGG | - | tig0025526:22051-22070 | Msa1423260:intron | 25.0% |
| ! | GTTCATATTGAACAAAGATA+GGG | - | tig0025526:22052-22071 | Msa1423260:CDS | 25.0% |
| ! | CATCTGATATGCAATAAAAA+AGG | - | tig0025526:22643-22662 | Msa1423260:intron | 25.0% |
| !! | CTATAAATCTCTTTTCACTT+TGG | + | tig0025526:22853-22872 | None:intergenic | 25.0% |
| ! | TATGAAAAATCATGGTAAGT+AGG | - | tig0025526:22956-22975 | Msa1423260:intron | 25.0% |
| ! | ATGAAAAATCATGGTAAGTA+GGG | - | tig0025526:22957-22976 | Msa1423260:intron | 25.0% |
| ! | CTTCAAATCAAGAATAATCT+AGG | + | tig0025526:22991-23010 | None:intergenic | 25.0% |
| ! | TACAAGAAAATGATGATTGT+GGG | + | tig0025526:23083-23102 | None:intergenic | 25.0% |
| ! | TTACAAGAAAATGATGATTG+TGG | + | tig0025526:23084-23103 | None:intergenic | 25.0% |
| !! | TATATTATAGTCAGAGTGTT+AGG | - | tig0025526:23129-23148 | Msa1423260:intron | 25.0% |
| ! | TTACACATATATGCTTTCTT+AGG | + | tig0025526:23240-23259 | None:intergenic | 25.0% |
| ! | AAGCATATATGTGTAAGATA+TGG | - | tig0025526:23244-23263 | Msa1423260:intron | 25.0% |
| !! | GATTAGAAATCTCAGTATTT+TGG | + | tig0025526:23911-23930 | None:intergenic | 25.0% |
| ! | GTAAGACGAAAACTAAATTT+AGG | + | tig0025526:23994-24013 | None:intergenic | 25.0% |
| !! | AATGATTTTTCTTCATTCGA+CGG | + | tig0025526:24405-24424 | None:intergenic | 25.0% |
| ! | ATTTATGTTTGGATCAATTG+TGG | - | tig0025526:24631-24650 | Msa1423260:five_prime_UTR | 25.0% |
| AGAGTGAAGTGAATAGAAAA+TGG | - | tig0025526:21289-21308 | Msa1423260:three_prime_UTR | 30.0% | |
| AATTCAACCTTGAGATTTGA+AGG | + | tig0025526:21410-21429 | None:intergenic | 30.0% | |
| AGAAATGAAATGAAAAGGGA+AGG | + | tig0025526:21443-21462 | None:intergenic | 30.0% | |
| AATGATCTGAAAGAGGAAAT+GGG | + | tig0025526:21491-21510 | None:intergenic | 30.0% | |
| ACAGATCTAGAAGAAATTGA+GGG | + | tig0025526:21562-21581 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCTTTCTAACCTTC+TGG | + | tig0025526:21976-21995 | None:intergenic | 30.0% |
| CAATATGTTGTTAGGAAACT+TGG | - | tig0025526:22235-22254 | Msa1423260:intron | 30.0% | |
| AACCAGATCTTTACTAGAAT+AGG | - | tig0025526:22431-22450 | Msa1423260:intron | 30.0% | |
| CATTGAGTTAGTAATCAAAG+AGG | + | tig0025526:22541-22560 | None:intergenic | 30.0% | |
| GAATATCATTGGAATTCGTA+AGG | + | tig0025526:22742-22761 | None:intergenic | 30.0% | |
| AGTAAAAGAACAATAGTCGT+AGG | - | tig0025526:22910-22929 | Msa1423260:intron | 30.0% | |
| AAATTGCCATATATTACTCG+TGG | + | tig0025526:23040-23059 | None:intergenic | 30.0% | |
| AAATGATGATTGTGGGTAAA+GGG | + | tig0025526:23076-23095 | None:intergenic | 30.0% | |
| AAAATGATGATTGTGGGTAA+AGG | + | tig0025526:23077-23096 | None:intergenic | 30.0% | |
| TAAGTTTATGCATACTGGAT+GGG | + | tig0025526:23167-23186 | None:intergenic | 30.0% | |
| !!! | TTGTTGTTTTCAGCCAATAT+GGG | + | tig0025526:23355-23374 | None:intergenic | 30.0% |
| !!! | ATTGTTGTTTTCAGCCAATA+TGG | + | tig0025526:23356-23375 | None:intergenic | 30.0% |
| !! | CCATATTTTGTTGTAGTTCA+TGG | + | tig0025526:23456-23475 | None:intergenic | 30.0% |
| CCATGAACTACAACAAAATA+TGG | - | tig0025526:23419-23438 | Msa1423260:intron | 30.0% | |
| ! | ATATGGATTATGCAGAAGAT+AGG | - | tig0025526:23470-23489 | Msa1423260:intron | 30.0% |
| AAGCAAGATTGCATATTTCT+TGG | + | tig0025526:23576-23595 | None:intergenic | 30.0% | |
| GAACTCATTAAATGAGAAAC+TGG | + | tig0025526:23613-23632 | None:intergenic | 30.0% | |
| !!! | TATTTTTTGGTGAAGGTTTG+AGG | - | tig0025526:23672-23691 | Msa1423260:intron | 30.0% |
| ! | ACATTCTTTTCTTAATGAGC+AGG | - | tig0025526:23741-23760 | Msa1423260:intron | 30.0% |
| !!! | CAGTATTTTGGAGTGTAAAT+GGG | + | tig0025526:23899-23918 | None:intergenic | 30.0% |
| !!! | TCAGTATTTTGGAGTGTAAA+TGG | + | tig0025526:23900-23919 | None:intergenic | 30.0% |
| ! | ATTTTGAATCAGTTTGCCTA+CGG | - | tig0025526:24035-24054 | Msa1423260:intron | 30.0% |
| TAAAGAGAACAAGGAATTCA+AGG | - | tig0025526:24069-24088 | Msa1423260:intron | 30.0% | |
| !! | CTTTCCTTCTTACTTTGTTT+TGG | + | tig0025526:24175-24194 | None:intergenic | 30.0% |
| CAAAACAAAGTAAGAAGGAA+AGG | - | tig0025526:24173-24192 | Msa1423260:intron | 30.0% | |
| ATCAGTATGAATATATCCAG+TGG | + | tig0025526:24237-24256 | None:intergenic | 30.0% | |
| ATGAACTTCCTTGGTTAAAT+TGG | - | tig0025526:24348-24367 | Msa1423260:intron | 30.0% | |
| !!! | TTTCTTTTGGAGTAGTAATC+AGG | + | tig0025526:24606-24625 | None:intergenic | 30.0% |
| ATGATCTGAAAGAGGAAATG+GGG | + | tig0025526:21490-21509 | None:intergenic | 35.0% | |
| CAATGATCTGAAAGAGGAAA+TGG | + | tig0025526:21492-21511 | None:intergenic | 35.0% | |
| AGAGATCAATGATCTGAAAG+AGG | + | tig0025526:21498-21517 | None:intergenic | 35.0% | |
| GACAGATCTAGAAGAAATTG+AGG | + | tig0025526:21563-21582 | None:intergenic | 35.0% | |
| TGCACTACATCAAACAACTA+AGG | + | tig0025526:21788-21807 | None:intergenic | 35.0% | |
| ACCAAGTGATTGAACTTAAG+TGG | - | tig0025526:21819-21838 | Msa1423260:CDS | 35.0% | |
| CCAAGTGATTGAACTTAAGT+GGG | - | tig0025526:21820-21839 | Msa1423260:CDS | 35.0% | |
| CATGTATGTCTTGTATGAGT+AGG | - | tig0025526:22001-22020 | Msa1423260:intron | 35.0% | |
| TATTGAACAAAGATAGGGCT+AGG | - | tig0025526:22057-22076 | Msa1423260:CDS | 35.0% | |
| TTGTATGTAGCTACTTCACT+AGG | - | tig0025526:22286-22305 | Msa1423260:intron | 35.0% | |
| CAAGCATTAAGATAGCCAAA+AGG | - | tig0025526:22371-22390 | Msa1423260:intron | 35.0% | |
| ! | TGATGCTATTGCTATCCTTT+TGG | + | tig0025526:22389-22408 | None:intergenic | 35.0% |
| CACCTATTCTAGTAAAGATC+TGG | + | tig0025526:22436-22455 | None:intergenic | 35.0% | |
| CTAGAATAGGTGTAGAAGAT+AGG | - | tig0025526:22444-22463 | Msa1423260:intron | 35.0% | |
| TCATGATCAGGATTGAATGA+GGG | + | tig0025526:22508-22527 | None:intergenic | 35.0% | |
| ! | TCTTTTCACTTTGGTTGTTG+AGG | + | tig0025526:22844-22863 | None:intergenic | 35.0% |
| ATCTCCTCCACTATTGTTTA+TGG | - | tig0025526:22884-22903 | Msa1423260:intron | 35.0% | |
| TCTCCTCCACTATTGTTTAT+GGG | - | tig0025526:22885-22904 | Msa1423260:intron | 35.0% | |
| TACTTCCCCATAAACAATAG+TGG | + | tig0025526:22894-22913 | None:intergenic | 35.0% | |
| AAAATCATGGTAAGTAGGGT+TGG | - | tig0025526:22961-22980 | Msa1423260:intron | 35.0% | |
| TGTGATCCACGAGTAATATA+TGG | - | tig0025526:23031-23050 | Msa1423260:intron | 35.0% | |
| CTAAGTTTATGCATACTGGA+TGG | + | tig0025526:23168-23187 | None:intergenic | 35.0% | |
| CATCCAGTATGCATAAACTT+AGG | - | tig0025526:23166-23185 | Msa1423260:intron | 35.0% | |
| ACACCTAAGTTTATGCATAC+TGG | + | tig0025526:23172-23191 | None:intergenic | 35.0% | |
| TTTGTTTCCAAGAGATTTGC+AGG | - | tig0025526:23205-23224 | Msa1423260:intron | 35.0% | |
| TTCAGCCAATATGGGAAATA+AGG | + | tig0025526:23347-23366 | None:intergenic | 35.0% | |
| TAATGAGCAGGTAGTTTACA+TGG | - | tig0025526:23753-23772 | Msa1423260:intron | 35.0% | |
| !! | TTTTGGCTGGTAAGTTTCAA+TGG | - | tig0025526:23842-23861 | Msa1423260:intron | 35.0% |
| CATGAGTTTCAACTTCAAGT+AGG | + | tig0025526:23933-23952 | None:intergenic | 35.0% | |
| GAAACTCATGCATTCAAATG+AGG | - | tig0025526:23943-23962 | Msa1423260:intron | 35.0% | |
| CATGTATCTAGTAGGAATTG+AGG | + | tig0025526:23969-23988 | None:intergenic | 35.0% | |
| TTTAGGCACATGTATCTAGT+AGG | + | tig0025526:23977-23996 | None:intergenic | 35.0% | |
| ! | CCTTGTTCTCTTTATTGACT+TGG | + | tig0025526:24063-24082 | None:intergenic | 35.0% |
| CCAAGTCAATAAAGAGAACA+AGG | - | tig0025526:24060-24079 | Msa1423260:intron | 35.0% | |
| AACAATGGTTGCCTTGAATT+TGG | + | tig0025526:24145-24164 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGCAAGTTCAACAA+TGG | + | tig0025526:24160-24179 | None:intergenic | 35.0% |
| CTTGCCAAAACAAAGTAAGA+AGG | - | tig0025526:24168-24187 | Msa1423260:intron | 35.0% | |
| AGTAAGAAGGAAAGGAAATG+AGG | - | tig0025526:24181-24200 | Msa1423260:intron | 35.0% | |
| ! | CTGCATATTATTTTCTCCAC+TGG | - | tig0025526:24218-24237 | Msa1423260:intron | 35.0% |
| ! | TGATTTTGTTCTCTGCAATG+TGG | - | tig0025526:24308-24327 | Msa1423260:intron | 35.0% |
| TCACGAAACCAATTTAACCA+AGG | + | tig0025526:24359-24378 | None:intergenic | 35.0% | |
| ! | TTGGTTAAATTGGTTTCGTG+AGG | - | tig0025526:24358-24377 | Msa1423260:CDS | 35.0% |
| CAAAATGAAGTCCCCAAAAA+TGG | + | tig0025526:24492-24511 | None:intergenic | 35.0% | |
| !! | AATTTCAGAAGGTGTTCACA+TGG | - | tig0025526:24571-24590 | Msa1423260:CDS | 35.0% |
| GATGAAGATGAAGAAGACGA+CGG | + | tig0025526:21320-21339 | None:intergenic | 40.0% | |
| ATCTTCTTCTTCCACCACAA+AGG | - | tig0025526:21337-21356 | Msa1423260:three_prime_UTR | 40.0% | |
| AACCTTGAGATTTGAAGGTG+TGG | + | tig0025526:21405-21424 | None:intergenic | 40.0% | |
| TGAAAGAGGAAATGGGGTTA+GGG | + | tig0025526:21484-21503 | None:intergenic | 40.0% | |
| AAATTGAGGGAAGAACCTGA+AGG | + | tig0025526:21549-21568 | None:intergenic | 40.0% | |
| CCCACTTAAGTTCAATCACT+TGG | + | tig0025526:21823-21842 | None:intergenic | 40.0% | |
| TAATGAGCTTCCGTTGAAGA+CGG | - | tig0025526:21843-21862 | Msa1423260:intron | 40.0% | |
| CCTAAACAATCCGTCTTCAA+CGG | + | tig0025526:21856-21875 | None:intergenic | 40.0% | |
| ! | AGCTAAGTATTGTTTCCGCT+GGG | + | tig0025526:21896-21915 | None:intergenic | 40.0% |
| ! | TAGCTAAGTATTGTTTCCGC+TGG | + | tig0025526:21897-21916 | None:intergenic | 40.0% |
| ! | GCTAGATTTTACTTACCTCC+TGG | - | tig0025526:21913-21932 | Msa1423260:intron | 40.0% |
| ! | TAGTAATTTGGAGTTCAGCC+AGG | + | tig0025526:21934-21953 | None:intergenic | 40.0% |
| TGGCTGAACTCCAAATTACT+AGG | - | tig0025526:21933-21952 | Msa1423260:intron | 40.0% | |
| !! | TTCTAACCTTCTGGTTCACA+AGG | + | tig0025526:21967-21986 | None:intergenic | 40.0% |
| ACAAAGATAGGGCTAGGTTT+AGG | - | tig0025526:22063-22082 | Msa1423260:CDS | 40.0% | |
| GAATGGCATAATTGAGCTGT+CGG | + | tig0025526:22211-22230 | None:intergenic | 40.0% | |
| !! | CGGAGATTGTTGATGATTCT+AGG | + | tig0025526:22338-22357 | None:intergenic | 40.0% |
| ATGCTTGATCGCAAACAAGT+CGG | + | tig0025526:22358-22377 | None:intergenic | 40.0% | |
| CTCATGATCAGGATTGAATG+AGG | + | tig0025526:22509-22528 | None:intergenic | 40.0% | |
| !! | ACTGTCTTTCTAGCTACAGA+GGG | + | tig0025526:22600-22619 | None:intergenic | 40.0% |
| ! | ATAGTGGAGGAGATCTTTCT+GGG | + | tig0025526:22878-22897 | None:intergenic | 40.0% |
| ! | AATAGTGGAGGAGATCTTTC+TGG | + | tig0025526:22879-22898 | None:intergenic | 40.0% |
| CTCCTCCACTATTGTTTATG+GGG | - | tig0025526:22886-22905 | Msa1423260:intron | 40.0% | |
| TTCCCCATAAACAATAGTGG+AGG | + | tig0025526:22891-22910 | None:intergenic | 40.0% | |
| ATGATTGTGGGTAAAGGGAA+AGG | + | tig0025526:23071-23090 | None:intergenic | 40.0% | |
| TTACACTCCTGCAAATCTCT+TGG | + | tig0025526:23215-23234 | None:intergenic | 40.0% | |
| CTCCATGGACATTGATATGT+AGG | - | tig0025526:23311-23330 | Msa1423260:intron | 40.0% | |
| CTCCTACATATCAATGTCCA+TGG | + | tig0025526:23316-23335 | None:intergenic | 40.0% | |
| ATATGGGAAATAAGGAACCC+CGG | + | tig0025526:23339-23358 | None:intergenic | 40.0% | |
| ! | GGGTTCCTTATTTCCCATAT+TGG | - | tig0025526:23339-23358 | Msa1423260:intron | 40.0% |
| ! | AAGGTTTGAGGTCGATAACT+AGG | - | tig0025526:23684-23703 | Msa1423260:intron | 40.0% |
| CCAGAAAGGAAGGAGTTAAA+TGG | + | tig0025526:23796-23815 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+TGG | - | tig0025526:23793-23812 | Msa1423260:intron | 40.0% | |
| !! | CTTTATTGACTTGGATCCGT+AGG | + | tig0025526:24054-24073 | None:intergenic | 40.0% |
| GATGTTACGAGCCAAATTCA+AGG | - | tig0025526:24131-24150 | Msa1423260:intron | 40.0% | |
| ! | TTGGTGATCATGAACTTCCT+TGG | - | tig0025526:24339-24358 | Msa1423260:intron | 40.0% |
| ! | TCTTCATTCGACGGTTCTTT+TGG | + | tig0025526:24396-24415 | None:intergenic | 40.0% |
| ACAGTAACATGAGAAAACCC+AGG | + | tig0025526:24442-24461 | None:intergenic | 40.0% | |
| ! | TCCCTTACCTCTTCCATTTT+TGG | - | tig0025526:24476-24495 | Msa1423260:intron | 40.0% |
| CCCAAAAATGGAAGAGGTAA+GGG | + | tig0025526:24480-24499 | None:intergenic | 40.0% | |
| !! | CCCTTACCTCTTCCATTTTT+GGG | - | tig0025526:24477-24496 | Msa1423260:intron | 40.0% |
| !! | CCTTACCTCTTCCATTTTTG+GGG | - | tig0025526:24478-24497 | Msa1423260:intron | 40.0% |
| ! | CTTGAGATTTGAAGGTGTGG+CGG | + | tig0025526:21402-21421 | None:intergenic | 45.0% |
| TGAAAAGGGAAGGAGAGAGA+TGG | + | tig0025526:21433-21452 | None:intergenic | 45.0% | |
| CTGAAAGAGGAAATGGGGTT+AGG | + | tig0025526:21485-21504 | None:intergenic | 45.0% | |
| !! | CCGTTGAAGACGGATTGTTT+AGG | - | tig0025526:21853-21872 | Msa1423260:intron | 45.0% |
| AAACCGAGTTCAAATCCCAG+CGG | - | tig0025526:21878-21897 | Msa1423260:intron | 45.0% | |
| TTTCCGCTGGGATTTGAACT+CGG | + | tig0025526:21884-21903 | None:intergenic | 45.0% | |
| ! | TAATTTGGAGTTCAGCCAGG+AGG | + | tig0025526:21931-21950 | None:intergenic | 45.0% |
| GGAAAGGGGTCCTAGTAATT+TGG | + | tig0025526:21946-21965 | None:intergenic | 45.0% | |
| !! | CTTCTGGTTCACAAGGAAAG+GGG | + | tig0025526:21960-21979 | None:intergenic | 45.0% |
| !! | CCTTCTGGTTCACAAGGAAA+GGG | + | tig0025526:21961-21980 | None:intergenic | 45.0% |
| !! | ACCTTCTGGTTCACAAGGAA+AGG | + | tig0025526:21962-21981 | None:intergenic | 45.0% |
| TCACTAGGCGTCAGTTTATC+TGG | - | tig0025526:22301-22320 | Msa1423260:intron | 45.0% | |
| !! | CACTGTCTTTCTAGCTACAG+AGG | + | tig0025526:22601-22620 | None:intergenic | 45.0% |
| TGTGTAAGATATGGCTAGCG+AGG | - | tig0025526:23253-23272 | Msa1423260:intron | 45.0% | |
| AGAGTCCTGTAAGTGTAGCT+CGG | - | tig0025526:23281-23300 | Msa1423260:intron | 45.0% | |
| GGACATTGATATGTAGGAGC+CGG | - | tig0025526:23317-23336 | Msa1423260:intron | 45.0% | |
| GACATTGATATGTAGGAGCC+GGG | - | tig0025526:23318-23337 | Msa1423260:intron | 45.0% | |
| ACATTGATATGTAGGAGCCG+GGG | - | tig0025526:23319-23338 | Msa1423260:intron | 45.0% | |
| !! | GTAGTTTACATGGCTCTGGT+GGG | - | tig0025526:23763-23782 | Msa1423260:intron | 45.0% |
| !! | AGAGAGTACTCCAGAAAGGA+AGG | + | tig0025526:23806-23825 | None:intergenic | 45.0% |
| !! | CACAAGAGAGTACTCCAGAA+AGG | + | tig0025526:23810-23829 | None:intergenic | 45.0% |
| ! | TCTGGAGTACTCTCTTGTGT+AGG | - | tig0025526:23811-23830 | Msa1423260:intron | 45.0% |
| ! | CTGGAGTACTCTCTTGTGTA+GGG | - | tig0025526:23812-23831 | Msa1423260:intron | 45.0% |
| ! | TTGTGTAGGGACTGCAGTTT+TGG | - | tig0025526:23825-23844 | Msa1423260:intron | 45.0% |
| ! | AAATCAGCAAAAGCACGCTC+TGG | + | tig0025526:24294-24313 | None:intergenic | 45.0% |
| CCCCAAAAATGGAAGAGGTA+AGG | + | tig0025526:24481-24500 | None:intergenic | 45.0% | |
| GAAGTCCCCAAAAATGGAAG+AGG | + | tig0025526:24486-24505 | None:intergenic | 45.0% | |
| GTCTTGTGCATCCTTTGTGG+TGG | + | tig0025526:21351-21370 | None:intergenic | 50.0% | |
| ! | CAGGTCTTGTGCATCCTTTG+TGG | + | tig0025526:21354-21373 | None:intergenic | 50.0% |
| AAGACCTGTTACGCGCTCTT+TGG | - | tig0025526:21366-21385 | Msa1423260:three_prime_UTR | 50.0% | |
| CGCCACACCTTCAAATCTCA+AGG | - | tig0025526:21400-21419 | Msa1423260:three_prime_UTR | 50.0% | |
| ! | TGTTTTCACCGCTCTCCTTC+AGG | - | tig0025526:21531-21550 | Msa1423260:exon | 50.0% |
| CCCTTTCCTTGTGAACCAGA+AGG | - | tig0025526:21958-21977 | Msa1423260:intron | 50.0% | |
| GGTGACAGTGTCTCATGATC+AGG | + | tig0025526:22520-22539 | None:intergenic | 50.0% | |
| TCCTGTAAGTGTAGCTCGGT+TGG | - | tig0025526:23285-23304 | Msa1423260:intron | 50.0% | |
| ACCAACCGAGCTACACTTAC+AGG | + | tig0025526:23289-23308 | None:intergenic | 50.0% | |
| GCAGGTAGTTTACATGGCTC+TGG | - | tig0025526:23759-23778 | Msa1423260:intron | 50.0% | |
| !! | GGTAGTTTACATGGCTCTGG+TGG | - | tig0025526:23762-23781 | Msa1423260:intron | 50.0% |
| AAGATCCTGCACAAGGATGG+AGG | + | tig0025526:24268-24287 | None:intergenic | 50.0% | |
| CTGCAATGTGGTGCTTCACT+TGG | - | tig0025526:24320-24339 | Msa1423260:intron | 50.0% | |
| ! | CAGACCAAAGAGCGCGTAAC+AGG | + | tig0025526:21373-21392 | None:intergenic | 55.0% |
| GAGAGCGGTGAAAACAGCGA+AGG | + | tig0025526:21527-21546 | None:intergenic | 55.0% | |
| GGGAAGAACCTGAAGGAGAG+CGG | + | tig0025526:21542-21561 | None:intergenic | 55.0% | |
| !! | TAGCTCGGTTGGTAGCTCCA+TGG | - | tig0025526:23296-23315 | Msa1423260:intron | 55.0% |
| !! | GTAGGGACTGCAGTTTTGGC+TGG | - | tig0025526:23829-23848 | Msa1423260:intron | 55.0% |
| TTGGTCCTCCATCCTTGTGC+AGG | - | tig0025526:24260-24279 | Msa1423260:intron | 55.0% | |
| CGCAAGATCCTGCACAAGGA+TGG | + | tig0025526:24271-24290 | None:intergenic | 55.0% | |
| CTGGCGCAAGATCCTGCACA+AGG | + | tig0025526:24275-24294 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025526 | gene | 21225 | 24677 | 21225 | ID=Msa1423260;Name=Msa1423260 |
| tig0025526 | mRNA | 21225 | 24677 | 21225 | ID=Msa1423260-mRNA-1;Parent=Msa1423260;Name=Msa1423260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=83|1|1|1|1|1|5|312|125 |
| tig0025526 | exon | 21225 | 21620 | 21225 | ID=Msa1423260-mRNA-1:exon:3126;Parent=Msa1423260-mRNA-1 |
| tig0025526 | exon | 21812 | 21855 | 21812 | ID=Msa1423260-mRNA-1:exon:3125;Parent=Msa1423260-mRNA-1 |
| tig0025526 | exon | 22052 | 22139 | 22052 | ID=Msa1423260-mRNA-1:exon:3124;Parent=Msa1423260-mRNA-1 |
| tig0025526 | exon | 24350 | 24397 | 24350 | ID=Msa1423260-mRNA-1:exon:3123;Parent=Msa1423260-mRNA-1 |
| tig0025526 | exon | 24481 | 24677 | 24481 | ID=Msa1423260-mRNA-1:exon:3122;Parent=Msa1423260-mRNA-1 |
| tig0025526 | five_prime_UTR | 24595 | 24677 | 24595 | ID=Msa1423260-mRNA-1:five_prime_utr;Parent=Msa1423260-mRNA-1 |
| tig0025526 | CDS | 24481 | 24594 | 24481 | ID=Msa1423260-mRNA-1:cds;Parent=Msa1423260-mRNA-1 |
| tig0025526 | CDS | 24350 | 24397 | 24350 | ID=Msa1423260-mRNA-1:cds;Parent=Msa1423260-mRNA-1 |
| tig0025526 | CDS | 22052 | 22139 | 22052 | ID=Msa1423260-mRNA-1:cds;Parent=Msa1423260-mRNA-1 |
| tig0025526 | CDS | 21812 | 21855 | 21812 | ID=Msa1423260-mRNA-1:cds;Parent=Msa1423260-mRNA-1 |
| tig0025526 | CDS | 21537 | 21620 | 21537 | ID=Msa1423260-mRNA-1:cds;Parent=Msa1423260-mRNA-1 |
| tig0025526 | three_prime_UTR | 21225 | 21536 | 21225 | ID=Msa1423260-mRNA-1:three_prime_utr;Parent=Msa1423260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
