Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719990 | XP_003612804.1 | 96.800 | 125 | 3 | 1 | 1 | 125 | 1 | 124 | 1.86e-80 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719990 | sp|Q9ZRA3|DAD1_PEA | 89.655 | 116 | 12 | 0 | 10 | 125 | 2 | 117 | 6.60e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719990 | G7KCB7 | 96.800 | 125 | 3 | 1 | 1 | 125 | 1 | 124 | 8.91e-81 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0093850 | Msa0719990 | 0.815799 | 7.680607e-52 | -8.615850e-47 |
| Msa0116380 | Msa0719990 | 0.811040 | 8.541147e-51 | -8.615850e-47 |
| Msa0719990 | Msa1418240 | 0.803964 | 2.710791e-49 | -8.615850e-47 |
| Msa0719990 | Msa1423260 | 0.988509 | 2.687668e-174 | -8.615850e-47 |
| Msa0226460 | Msa0719990 | 0.800900 | 1.160211e-48 | -8.615850e-47 |
| Msa0423750 | Msa0719990 | 0.805925 | 1.054743e-49 | -8.615850e-47 |
| Msa0485240 | Msa0719990 | 0.807047 | 6.115608e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719990 | MtrunA17_Chr5g0410671 | 96.800 | 125 | 3 | 1 | 1 | 125 | 1 | 124 | 1.72e-84 | 242 |
| Msa0719990 | MtrunA17_Chr3g0085841 | 92.035 | 113 | 9 | 0 | 13 | 125 | 3 | 115 | 6.19e-75 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719990 | AT1G32210.1 | 89.381 | 113 | 12 | 0 | 13 | 125 | 3 | 115 | 1.97e-72 | 212 |
| Msa0719990 | AT2G35520.3 | 87.500 | 112 | 14 | 0 | 14 | 125 | 4 | 115 | 1.57e-70 | 207 |
| Msa0719990 | AT2G35520.1 | 87.500 | 112 | 14 | 0 | 14 | 125 | 4 | 115 | 1.57e-70 | 207 |
| Msa0719990 | AT2G35520.2 | 86.726 | 113 | 14 | 1 | 14 | 125 | 4 | 116 | 9.41e-69 | 202 |
| Msa0719990 | AT1G32210.2 | 88.372 | 86 | 10 | 0 | 13 | 98 | 3 | 88 | 5.40e-51 | 157 |
Find 44 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+TGG | 0.079648 | 5_1:-15702755 | Msa0719990:CDS |
| ATGAACTTCCTTGGTTAAAT+TGG | 0.182066 | 5_1:-15702200 | Msa0719990:exon |
| ACATAAATTTAACTTTCTTT+TGG | 0.238898 | 5_1:+15701932 | None:intergenic |
| TCTTCATTCGACGGTTCTTT+TGG | 0.282200 | 5_1:+15702155 | None:intergenic |
| CCTTGTTCTCTTTATTGACT+TGG | 0.294683 | 5_1:+15702488 | None:intergenic |
| TTGTGTAGGGACTGCAGTTT+TGG | 0.309103 | 5_1:-15702723 | Msa0719990:CDS |
| AGAGTGAAGTGAATAGAAAA+TGG | 0.320614 | 5_1:-15705260 | Msa0719990:exon |
| TCTGAAATTCATCATTATAA+AGG | 0.325897 | 5_1:+15701991 | None:intergenic |
| CCAGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 5_1:+15702755 | None:intergenic |
| AAGAAAGTTAAATTTATGTT+TGG | 0.343052 | 5_1:-15701928 | Msa0719990:three_prime_UTR |
| CATTAGTATTATTATATACC+TGG | 0.371004 | 5_1:-15702127 | Msa0719990:three_prime_UTR |
| AAGACCTGTTACGCGCTCTT+TGG | 0.386859 | 5_1:-15705183 | Msa0719990:CDS |
| CAGACCAAAGAGCGCGTAAC+AGG | 0.402996 | 5_1:+15705179 | None:intergenic |
| AATTCAACCTTGAGATTTGA+AGG | 0.427498 | 5_1:+15705142 | None:intergenic |
| CTGCAATGTGGTGCTTCACT+TGG | 0.443749 | 5_1:-15702228 | Msa0719990:CDS |
| ATTTATGTTTGGATCAATTG+TGG | 0.449053 | 5_1:-15701917 | Msa0719990:three_prime_UTR |
| TAAAGAGAACAAGGAATTCA+AGG | 0.449780 | 5_1:-15702479 | Msa0719990:intron |
| TTGGTGATCATGAACTTCCT+TGG | 0.461860 | 5_1:-15702209 | Msa0719990:CDS |
| TAATGAGCAGGTAGTTTACA+TGG | 0.468668 | 5_1:-15702795 | Msa0719990:intron |
| TCTGGAGTACTCTCTTGTGT+AGG | 0.476123 | 5_1:-15702737 | Msa0719990:CDS |
| CTGGAGTACTCTCTTGTGTA+GGG | 0.477751 | 5_1:-15702736 | Msa0719990:CDS |
| CAGGTCTTGTGCATCCTTTG+TGG | 0.478801 | 5_1:+15705198 | None:intergenic |
| CTTTATTGACTTGGATCCGT+AGG | 0.510758 | 5_1:+15702497 | None:intergenic |
| GCAGGTAGTTTACATGGCTC+TGG | 0.513030 | 5_1:-15702789 | Msa0719990:intron |
| CGCCACACCTTCAAATCTCA+AGG | 0.514404 | 5_1:-15705149 | Msa0719990:intron |
| GGTAGTTTACATGGCTCTGG+TGG | 0.533436 | 5_1:-15702786 | Msa0719990:CDS |
| AAATCAGCAAAAGCACGCTC+TGG | 0.534463 | 5_1:+15702257 | None:intergenic |
| ATTAGTATTATTATATACCT+GGG | 0.541597 | 5_1:-15702126 | Msa0719990:three_prime_UTR |
| AACCTTGAGATTTGAAGGTG+TGG | 0.550984 | 5_1:+15705147 | None:intergenic |
| CACAAGAGAGTACTCCAGAA+AGG | 0.561497 | 5_1:+15702741 | None:intergenic |
| AGAGAGTACTCCAGAAAGGA+AGG | 0.562124 | 5_1:+15702745 | None:intergenic |
| CCAAGTCAATAAAGAGAACA+AGG | 0.563011 | 5_1:-15702488 | Msa0719990:CDS |
| TTGGTTAAATTGGTTTCGTG+AGG | 0.564359 | 5_1:-15702190 | Msa0719990:exon |
| GTCTTGTGCATCCTTTGTGG+TGG | 0.567641 | 5_1:+15705201 | None:intergenic |
| ATCTTCTTCTTCCACCACAA+AGG | 0.572889 | 5_1:-15705212 | Msa0719990:CDS |
| TTATAATGATGAATTTCAGA+AGG | 0.589690 | 5_1:-15701988 | Msa0719990:three_prime_UTR |
| AATTTCAGAAGGTGTTCACA+TGG | 0.613310 | 5_1:-15701977 | Msa0719990:three_prime_UTR |
| CTTGAGATTTGAAGGTGTGG+CGG | 0.618708 | 5_1:+15705150 | None:intergenic |
| GTAGTTTACATGGCTCTGGT+GGG | 0.631716 | 5_1:-15702785 | Msa0719990:CDS |
| GAGAGCGGTGAAAACAGCGA+AGG | 0.649072 | 5_1:+15705025 | None:intergenic |
| GGGAAGAACCTGAAGGAGAG+CGG | 0.672467 | 5_1:+15705010 | None:intergenic |
| TCACGAAACCAATTTAACCA+AGG | 0.685768 | 5_1:+15702192 | None:intergenic |
| GATGAAGATGAAGAAGACGA+CGG | 0.700736 | 5_1:+15705232 | None:intergenic |
| ACAGTAACATGAGAAAACCC+AGG | 0.726384 | 5_1:+15702109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAAAAAGATTAATATA+TGG | + | chr5_1:15702253-15702272 | None:intergenic | 10.0% |
| !!! | TTTGCTCTTATTTATAATTA+TGG | - | chr5_1:15702359-15702378 | Msa0719990:intron | 15.0% |
| !!! | CATTTTGTTTAATTGTATTT+TGG | + | chr5_1:15703244-15703263 | None:intergenic | 15.0% |
| !! | AAAGTATATAAAAATTGATC+AGG | - | chr5_1:15703470-15703489 | Msa0719990:intron | 15.0% |
| !!! | TTTTAACGGTTTTAAAAAAA+TGG | - | chr5_1:15704306-15704325 | Msa0719990:intron | 15.0% |
| !!! | GCAAATAAGAAATTATTTTT+TGG | - | chr5_1:15704328-15704347 | Msa0719990:intron | 15.0% |
| !! | ATATATTCATACTGATAATT+TGG | - | chr5_1:15704910-15704929 | Msa0719990:intron | 15.0% |
| !! | ATTAGTATTATTATATACCT+GGG | - | chr5_1:15705091-15705110 | Msa0719990:intron | 15.0% |
| !!! | ACATAAATTTAACTTTCTTT+TGG | + | chr5_1:15705288-15705307 | None:intergenic | 15.0% |
| !! | AAGAAAGTTAAATTTATGTT+TGG | - | chr5_1:15705289-15705308 | Msa0719990:five_prime_UTR | 15.0% |
| !! | ATGAAGAAATGAAATGAAAA+GGG | + | chr5_1:15702115-15702134 | None:intergenic | 20.0% |
| !! | TATGAAGAAATGAAATGAAA+AGG | + | chr5_1:15702116-15702135 | None:intergenic | 20.0% |
| !! | AAGATAATTGCACTTAAATA+AGG | + | chr5_1:15702808-15702827 | None:intergenic | 20.0% |
| !!! | TAACAACATATTGTTTTGAA+TGG | + | chr5_1:15702897-15702916 | None:intergenic | 20.0% |
| !! | ATTCAAAACAATATGTTGTT+AGG | - | chr5_1:15702896-15702915 | Msa0719990:intron | 20.0% |
| !!! | TTTGTTTAATTGTATTTTGG+AGG | + | chr5_1:15703241-15703260 | None:intergenic | 20.0% |
| !!! | TAATGGCTCTAAATAATATT+GGG | + | chr5_1:15703348-15703367 | None:intergenic | 20.0% |
| !!! | TTAATGGCTCTAAATAATAT+TGG | + | chr5_1:15703349-15703368 | None:intergenic | 20.0% |
| !! | TCTGTATGTTTATACATTAA+TGG | + | chr5_1:15703365-15703384 | None:intergenic | 20.0% |
| !! | TAAAAGTAGAAGAATATCAT+TGG | + | chr5_1:15703422-15703441 | None:intergenic | 20.0% |
| !!! | ATGATATTCTTCTACTTTTA+TGG | - | chr5_1:15703422-15703441 | Msa0719990:intron | 20.0% |
| !!! | TGATATTCTTCTACTTTTAT+GGG | - | chr5_1:15703423-15703442 | Msa0719990:intron | 20.0% |
| !!! | TTTGATTAATTTTTTTCAGC+AGG | + | chr5_1:15703450-15703469 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTATGAAAAATCA+TGG | - | chr5_1:15703617-15703636 | Msa0719990:intron | 20.0% |
| !!! | AATTATTTTGTTGTAGTTCA+TGG | + | chr5_1:15704091-15704110 | None:intergenic | 20.0% |
| !!! | TAATGAGTTCTTACTTTTAA+CGG | - | chr5_1:15704292-15704311 | Msa0719990:intron | 20.0% |
| !!! | AAGAAATTATTTTTTGGTGA+AGG | - | chr5_1:15704334-15704353 | Msa0719990:intron | 20.0% |
| !! | CATTAGTATTATTATATACC+TGG | - | chr5_1:15705090-15705109 | Msa0719990:intron | 20.0% |
| !!! | TCTGAAATTCATCATTATAA+AGG | + | chr5_1:15705229-15705248 | None:intergenic | 20.0% |
| !! | TTATAATGATGAATTTCAGA+AGG | - | chr5_1:15705229-15705248 | Msa0719990:CDS | 20.0% |
| !! | TTTTCCTGATTATGACATTT+TGG | - | chr5_1:15702392-15702411 | Msa0719990:intron | 25.0% |
| ! | TTAACCAAAATGTCATAATC+AGG | + | chr5_1:15702399-15702418 | None:intergenic | 25.0% |
| ! | AGTTCATATTGAACAAAGAT+AGG | - | chr5_1:15702720-15702739 | Msa0719990:CDS | 25.0% |
| ! | GTTCATATTGAACAAAGATA+GGG | - | chr5_1:15702721-15702740 | Msa0719990:CDS | 25.0% |
| ! | CATCTGATATGCAATAAAAA+AGG | - | chr5_1:15703312-15703331 | Msa0719990:intron | 25.0% |
| !! | CTATAAATCTCTTTTCACTT+TGG | + | chr5_1:15703522-15703541 | None:intergenic | 25.0% |
| ! | TATGAAAAATCATGGTAAGT+AGG | - | chr5_1:15703625-15703644 | Msa0719990:intron | 25.0% |
| ! | ATGAAAAATCATGGTAAGTA+GGG | - | chr5_1:15703626-15703645 | Msa0719990:intron | 25.0% |
| ! | CTTCAAATCAAGAATAATCT+AGG | + | chr5_1:15703660-15703679 | None:intergenic | 25.0% |
| ! | TACAAGAAAATGATGATTGT+GGG | + | chr5_1:15703752-15703771 | None:intergenic | 25.0% |
| ! | TTACAAGAAAATGATGATTG+TGG | + | chr5_1:15703753-15703772 | None:intergenic | 25.0% |
| !! | TATATTATAGTCAGAGTGTT+AGG | - | chr5_1:15703798-15703817 | Msa0719990:intron | 25.0% |
| ! | TTACACATATATGCTTTCTT+AGG | + | chr5_1:15703909-15703928 | None:intergenic | 25.0% |
| ! | AAGCATATATGTGTAAGATA+TGG | - | chr5_1:15703913-15703932 | Msa0719990:intron | 25.0% |
| !! | GATTAGAAATCTCAGTATTT+TGG | + | chr5_1:15704580-15704599 | None:intergenic | 25.0% |
| ! | GTAAGACGAAAACTAAATTT+AGG | + | chr5_1:15704663-15704682 | None:intergenic | 25.0% |
| !! | AATGATTTTTCTTCATTCGA+CGG | + | chr5_1:15705074-15705093 | None:intergenic | 25.0% |
| ! | ATTTATGTTTGGATCAATTG+TGG | - | chr5_1:15705300-15705319 | Msa0719990:five_prime_UTR | 25.0% |
| AGAGTGAAGTGAATAGAAAA+TGG | - | chr5_1:15701957-15701976 | Msa0719990:three_prime_UTR | 30.0% | |
| AATTCAACCTTGAGATTTGA+AGG | + | chr5_1:15702078-15702097 | None:intergenic | 30.0% | |
| AGAAATGAAATGAAAAGGGA+AGG | + | chr5_1:15702111-15702130 | None:intergenic | 30.0% | |
| AATGATCTGAAAGAGGAAAT+GGG | + | chr5_1:15702159-15702178 | None:intergenic | 30.0% | |
| ACAGATCTAGAAGAAATTGA+GGG | + | chr5_1:15702230-15702249 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCTTTCTAACCTTC+TGG | + | chr5_1:15702645-15702664 | None:intergenic | 30.0% |
| CAATATGTTGTTAGGAAACT+TGG | - | chr5_1:15702904-15702923 | Msa0719990:intron | 30.0% | |
| AACCAGATCTTTACTAGAAT+AGG | - | chr5_1:15703100-15703119 | Msa0719990:intron | 30.0% | |
| CATTGAGTTAGTAATCAAAG+AGG | + | chr5_1:15703210-15703229 | None:intergenic | 30.0% | |
| GAATATCATTGGAATTCGTA+AGG | + | chr5_1:15703411-15703430 | None:intergenic | 30.0% | |
| AGTAAAAGAACAATAGTCGT+AGG | - | chr5_1:15703579-15703598 | Msa0719990:intron | 30.0% | |
| AAATTGCCATATATTACTCG+TGG | + | chr5_1:15703709-15703728 | None:intergenic | 30.0% | |
| AAATGATGATTGTGGGTAAA+GGG | + | chr5_1:15703745-15703764 | None:intergenic | 30.0% | |
| AAAATGATGATTGTGGGTAA+AGG | + | chr5_1:15703746-15703765 | None:intergenic | 30.0% | |
| TAAGTTTATGCATACTGGAT+GGG | + | chr5_1:15703836-15703855 | None:intergenic | 30.0% | |
| !!! | TTGTTGTTTTCAGCCAATAT+GGG | + | chr5_1:15704024-15704043 | None:intergenic | 30.0% |
| !!! | ATTGTTGTTTTCAGCCAATA+TGG | + | chr5_1:15704025-15704044 | None:intergenic | 30.0% |
| !! | CCATATTTTGTTGTAGTTCA+TGG | + | chr5_1:15704125-15704144 | None:intergenic | 30.0% |
| CCATGAACTACAACAAAATA+TGG | - | chr5_1:15704088-15704107 | Msa0719990:intron | 30.0% | |
| ! | ATATGGATTATGCAGAAGAT+AGG | - | chr5_1:15704139-15704158 | Msa0719990:intron | 30.0% |
| AAGCAAGATTGCATATTTCT+TGG | + | chr5_1:15704245-15704264 | None:intergenic | 30.0% | |
| GAACTCATTAAATGAGAAAC+TGG | + | chr5_1:15704282-15704301 | None:intergenic | 30.0% | |
| !!! | TATTTTTTGGTGAAGGTTTG+AGG | - | chr5_1:15704341-15704360 | Msa0719990:intron | 30.0% |
| ! | ACATTCTTTTCTTAATGAGC+AGG | - | chr5_1:15704410-15704429 | Msa0719990:intron | 30.0% |
| !!! | CAGTATTTTGGAGTGTAAAT+GGG | + | chr5_1:15704568-15704587 | None:intergenic | 30.0% |
| !!! | TCAGTATTTTGGAGTGTAAA+TGG | + | chr5_1:15704569-15704588 | None:intergenic | 30.0% |
| ! | ATTTTGAATCAGTTTGCCTA+CGG | - | chr5_1:15704704-15704723 | Msa0719990:intron | 30.0% |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr5_1:15704738-15704757 | Msa0719990:intron | 30.0% | |
| !! | CTTTCCTTCTTACTTTGTTT+TGG | + | chr5_1:15704844-15704863 | None:intergenic | 30.0% |
| CAAAACAAAGTAAGAAGGAA+AGG | - | chr5_1:15704842-15704861 | Msa0719990:intron | 30.0% | |
| ATCAGTATGAATATATCCAG+TGG | + | chr5_1:15704906-15704925 | None:intergenic | 30.0% | |
| ATGAACTTCCTTGGTTAAAT+TGG | - | chr5_1:15705017-15705036 | Msa0719990:intron | 30.0% | |
| !!! | TTTCTTTTGGAGTAGTAATC+AGG | + | chr5_1:15705275-15705294 | None:intergenic | 30.0% |
| ATGATCTGAAAGAGGAAATG+GGG | + | chr5_1:15702158-15702177 | None:intergenic | 35.0% | |
| CAATGATCTGAAAGAGGAAA+TGG | + | chr5_1:15702160-15702179 | None:intergenic | 35.0% | |
| AGAGATCAATGATCTGAAAG+AGG | + | chr5_1:15702166-15702185 | None:intergenic | 35.0% | |
| GACAGATCTAGAAGAAATTG+AGG | + | chr5_1:15702231-15702250 | None:intergenic | 35.0% | |
| TGCACTACATCAAACAACTA+AGG | + | chr5_1:15702457-15702476 | None:intergenic | 35.0% | |
| ACCAAGTGATTGAACTTAAG+TGG | - | chr5_1:15702488-15702507 | Msa0719990:CDS | 35.0% | |
| CCAAGTGATTGAACTTAAGT+GGG | - | chr5_1:15702489-15702508 | Msa0719990:CDS | 35.0% | |
| CATGTATGTCTTGTATGAGT+AGG | - | chr5_1:15702670-15702689 | Msa0719990:intron | 35.0% | |
| TATTGAACAAAGATAGGGCT+AGG | - | chr5_1:15702726-15702745 | Msa0719990:CDS | 35.0% | |
| TTGTATGTAGCTACTTCACT+AGG | - | chr5_1:15702955-15702974 | Msa0719990:intron | 35.0% | |
| CAAGCATTAAGATAGCCAAA+AGG | - | chr5_1:15703040-15703059 | Msa0719990:intron | 35.0% | |
| ! | TGATGCTATTGCTATCCTTT+TGG | + | chr5_1:15703058-15703077 | None:intergenic | 35.0% |
| CACCTATTCTAGTAAAGATC+TGG | + | chr5_1:15703105-15703124 | None:intergenic | 35.0% | |
| CTAGAATAGGTGTAGAAGAT+AGG | - | chr5_1:15703113-15703132 | Msa0719990:intron | 35.0% | |
| TCATGATCAGGATTGAATGA+GGG | + | chr5_1:15703177-15703196 | None:intergenic | 35.0% | |
| ! | TCTTTTCACTTTGGTTGTTG+AGG | + | chr5_1:15703513-15703532 | None:intergenic | 35.0% |
| ATCTCCTCCACTATTGTTTA+TGG | - | chr5_1:15703553-15703572 | Msa0719990:intron | 35.0% | |
| TCTCCTCCACTATTGTTTAT+GGG | - | chr5_1:15703554-15703573 | Msa0719990:intron | 35.0% | |
| TACTTCCCCATAAACAATAG+TGG | + | chr5_1:15703563-15703582 | None:intergenic | 35.0% | |
| AAAATCATGGTAAGTAGGGT+TGG | - | chr5_1:15703630-15703649 | Msa0719990:intron | 35.0% | |
| TGTGATCCACGAGTAATATA+TGG | - | chr5_1:15703700-15703719 | Msa0719990:intron | 35.0% | |
| CTAAGTTTATGCATACTGGA+TGG | + | chr5_1:15703837-15703856 | None:intergenic | 35.0% | |
| CATCCAGTATGCATAAACTT+AGG | - | chr5_1:15703835-15703854 | Msa0719990:intron | 35.0% | |
| ACACCTAAGTTTATGCATAC+TGG | + | chr5_1:15703841-15703860 | None:intergenic | 35.0% | |
| TTTGTTTCCAAGAGATTTGC+AGG | - | chr5_1:15703874-15703893 | Msa0719990:intron | 35.0% | |
| TTCAGCCAATATGGGAAATA+AGG | + | chr5_1:15704016-15704035 | None:intergenic | 35.0% | |
| TAATGAGCAGGTAGTTTACA+TGG | - | chr5_1:15704422-15704441 | Msa0719990:intron | 35.0% | |
| !! | TTTTGGCTGGTAAGTTTCAA+TGG | - | chr5_1:15704511-15704530 | Msa0719990:intron | 35.0% |
| CATGAGTTTCAACTTCAAGT+AGG | + | chr5_1:15704602-15704621 | None:intergenic | 35.0% | |
| GAAACTCATGCATTCAAATG+AGG | - | chr5_1:15704612-15704631 | Msa0719990:intron | 35.0% | |
| CATGTATCTAGTAGGAATTG+AGG | + | chr5_1:15704638-15704657 | None:intergenic | 35.0% | |
| TTTAGGCACATGTATCTAGT+AGG | + | chr5_1:15704646-15704665 | None:intergenic | 35.0% | |
| ! | CCTTGTTCTCTTTATTGACT+TGG | + | chr5_1:15704732-15704751 | None:intergenic | 35.0% |
| CCAAGTCAATAAAGAGAACA+AGG | - | chr5_1:15704729-15704748 | Msa0719990:intron | 35.0% | |
| AACAATGGTTGCCTTGAATT+TGG | + | chr5_1:15704814-15704833 | None:intergenic | 35.0% | |
| !!! | TGTTTTGGCAAGTTCAACAA+TGG | + | chr5_1:15704829-15704848 | None:intergenic | 35.0% |
| CTTGCCAAAACAAAGTAAGA+AGG | - | chr5_1:15704837-15704856 | Msa0719990:intron | 35.0% | |
| AGTAAGAAGGAAAGGAAATG+AGG | - | chr5_1:15704850-15704869 | Msa0719990:intron | 35.0% | |
| ! | CTGCATATTATTTTCTCCAC+TGG | - | chr5_1:15704887-15704906 | Msa0719990:intron | 35.0% |
| ! | TGATTTTGTTCTCTGCAATG+TGG | - | chr5_1:15704977-15704996 | Msa0719990:intron | 35.0% |
| TCACGAAACCAATTTAACCA+AGG | + | chr5_1:15705028-15705047 | None:intergenic | 35.0% | |
| ! | TTGGTTAAATTGGTTTCGTG+AGG | - | chr5_1:15705027-15705046 | Msa0719990:CDS | 35.0% |
| CAAAATGAAGTCCCCAAAAA+TGG | + | chr5_1:15705161-15705180 | None:intergenic | 35.0% | |
| !! | AATTTCAGAAGGTGTTCACA+TGG | - | chr5_1:15705240-15705259 | Msa0719990:CDS | 35.0% |
| GATGAAGATGAAGAAGACGA+CGG | + | chr5_1:15701988-15702007 | None:intergenic | 40.0% | |
| ATCTTCTTCTTCCACCACAA+AGG | - | chr5_1:15702005-15702024 | Msa0719990:three_prime_UTR | 40.0% | |
| AACCTTGAGATTTGAAGGTG+TGG | + | chr5_1:15702073-15702092 | None:intergenic | 40.0% | |
| TGAAAGAGGAAATGGGGTTA+GGG | + | chr5_1:15702152-15702171 | None:intergenic | 40.0% | |
| AAATTGAGGGAAGAACCTGA+AGG | + | chr5_1:15702217-15702236 | None:intergenic | 40.0% | |
| CCCACTTAAGTTCAATCACT+TGG | + | chr5_1:15702492-15702511 | None:intergenic | 40.0% | |
| TAATGAGCTTCCGTTGAAGA+CGG | - | chr5_1:15702512-15702531 | Msa0719990:intron | 40.0% | |
| CCTAAACAATCCGTCTTCAA+CGG | + | chr5_1:15702525-15702544 | None:intergenic | 40.0% | |
| ! | AGCTAAGTATTGTTTCCGCT+GGG | + | chr5_1:15702565-15702584 | None:intergenic | 40.0% |
| ! | TAGCTAAGTATTGTTTCCGC+TGG | + | chr5_1:15702566-15702585 | None:intergenic | 40.0% |
| ! | GCTAGATTTTACTTACCTCC+TGG | - | chr5_1:15702582-15702601 | Msa0719990:intron | 40.0% |
| ! | TAGTAATTTGGAGTTCAGCC+AGG | + | chr5_1:15702603-15702622 | None:intergenic | 40.0% |
| TGGCTGAACTCCAAATTACT+AGG | - | chr5_1:15702602-15702621 | Msa0719990:intron | 40.0% | |
| !! | TTCTAACCTTCTGGTTCACA+AGG | + | chr5_1:15702636-15702655 | None:intergenic | 40.0% |
| ACAAAGATAGGGCTAGGTTT+AGG | - | chr5_1:15702732-15702751 | Msa0719990:CDS | 40.0% | |
| GAATGGCATAATTGAGCTGT+CGG | + | chr5_1:15702880-15702899 | None:intergenic | 40.0% | |
| !! | CGGAGATTGTTGATGATTCT+AGG | + | chr5_1:15703007-15703026 | None:intergenic | 40.0% |
| ATGCTTGATCGCAAACAAGT+CGG | + | chr5_1:15703027-15703046 | None:intergenic | 40.0% | |
| CTCATGATCAGGATTGAATG+AGG | + | chr5_1:15703178-15703197 | None:intergenic | 40.0% | |
| !! | ACTGTCTTTCTAGCTACAGA+GGG | + | chr5_1:15703269-15703288 | None:intergenic | 40.0% |
| ! | ATAGTGGAGGAGATCTTTCT+GGG | + | chr5_1:15703547-15703566 | None:intergenic | 40.0% |
| ! | AATAGTGGAGGAGATCTTTC+TGG | + | chr5_1:15703548-15703567 | None:intergenic | 40.0% |
| CTCCTCCACTATTGTTTATG+GGG | - | chr5_1:15703555-15703574 | Msa0719990:intron | 40.0% | |
| TTCCCCATAAACAATAGTGG+AGG | + | chr5_1:15703560-15703579 | None:intergenic | 40.0% | |
| ATGATTGTGGGTAAAGGGAA+AGG | + | chr5_1:15703740-15703759 | None:intergenic | 40.0% | |
| TTACACTCCTGCAAATCTCT+TGG | + | chr5_1:15703884-15703903 | None:intergenic | 40.0% | |
| CTCCATGGACATTGATATGT+AGG | - | chr5_1:15703980-15703999 | Msa0719990:intron | 40.0% | |
| CTCCTACATATCAATGTCCA+TGG | + | chr5_1:15703985-15704004 | None:intergenic | 40.0% | |
| ATATGGGAAATAAGGAACCC+CGG | + | chr5_1:15704008-15704027 | None:intergenic | 40.0% | |
| ! | GGGTTCCTTATTTCCCATAT+TGG | - | chr5_1:15704008-15704027 | Msa0719990:intron | 40.0% |
| ! | AAGGTTTGAGGTCGATAACT+AGG | - | chr5_1:15704353-15704372 | Msa0719990:intron | 40.0% |
| CCAGAAAGGAAGGAGTTAAA+TGG | + | chr5_1:15704465-15704484 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+TGG | - | chr5_1:15704462-15704481 | Msa0719990:intron | 40.0% | |
| !! | CTTTATTGACTTGGATCCGT+AGG | + | chr5_1:15704723-15704742 | None:intergenic | 40.0% |
| GATGTTACGAGCCAAATTCA+AGG | - | chr5_1:15704800-15704819 | Msa0719990:intron | 40.0% | |
| ! | TTGGTGATCATGAACTTCCT+TGG | - | chr5_1:15705008-15705027 | Msa0719990:intron | 40.0% |
| ! | TCTTCATTCGACGGTTCTTT+TGG | + | chr5_1:15705065-15705084 | None:intergenic | 40.0% |
| ACAGTAACATGAGAAAACCC+AGG | + | chr5_1:15705111-15705130 | None:intergenic | 40.0% | |
| ! | TCCCTTACCTCTTCCATTTT+TGG | - | chr5_1:15705145-15705164 | Msa0719990:intron | 40.0% |
| CCCAAAAATGGAAGAGGTAA+GGG | + | chr5_1:15705149-15705168 | None:intergenic | 40.0% | |
| !! | CCCTTACCTCTTCCATTTTT+GGG | - | chr5_1:15705146-15705165 | Msa0719990:intron | 40.0% |
| !! | CCTTACCTCTTCCATTTTTG+GGG | - | chr5_1:15705147-15705166 | Msa0719990:intron | 40.0% |
| ! | CTTGAGATTTGAAGGTGTGG+CGG | + | chr5_1:15702070-15702089 | None:intergenic | 45.0% |
| TGAAAAGGGAAGGAGAGAGA+TGG | + | chr5_1:15702101-15702120 | None:intergenic | 45.0% | |
| CTGAAAGAGGAAATGGGGTT+AGG | + | chr5_1:15702153-15702172 | None:intergenic | 45.0% | |
| !! | CCGTTGAAGACGGATTGTTT+AGG | - | chr5_1:15702522-15702541 | Msa0719990:intron | 45.0% |
| AAACCGAGTTCAAATCCCAG+CGG | - | chr5_1:15702547-15702566 | Msa0719990:intron | 45.0% | |
| TTTCCGCTGGGATTTGAACT+CGG | + | chr5_1:15702553-15702572 | None:intergenic | 45.0% | |
| ! | TAATTTGGAGTTCAGCCAGG+AGG | + | chr5_1:15702600-15702619 | None:intergenic | 45.0% |
| GGAAAGGGGTCCTAGTAATT+TGG | + | chr5_1:15702615-15702634 | None:intergenic | 45.0% | |
| !! | CTTCTGGTTCACAAGGAAAG+GGG | + | chr5_1:15702629-15702648 | None:intergenic | 45.0% |
| !! | CCTTCTGGTTCACAAGGAAA+GGG | + | chr5_1:15702630-15702649 | None:intergenic | 45.0% |
| !! | ACCTTCTGGTTCACAAGGAA+AGG | + | chr5_1:15702631-15702650 | None:intergenic | 45.0% |
| TCACTAGGCGTCAGTTTATC+TGG | - | chr5_1:15702970-15702989 | Msa0719990:intron | 45.0% | |
| !! | CACTGTCTTTCTAGCTACAG+AGG | + | chr5_1:15703270-15703289 | None:intergenic | 45.0% |
| TGTGTAAGATATGGCTAGCG+AGG | - | chr5_1:15703922-15703941 | Msa0719990:intron | 45.0% | |
| AGAGTCCTGTAAGTGTAGCT+CGG | - | chr5_1:15703950-15703969 | Msa0719990:intron | 45.0% | |
| GGACATTGATATGTAGGAGC+CGG | - | chr5_1:15703986-15704005 | Msa0719990:intron | 45.0% | |
| GACATTGATATGTAGGAGCC+GGG | - | chr5_1:15703987-15704006 | Msa0719990:intron | 45.0% | |
| ACATTGATATGTAGGAGCCG+GGG | - | chr5_1:15703988-15704007 | Msa0719990:intron | 45.0% | |
| !! | GTAGTTTACATGGCTCTGGT+GGG | - | chr5_1:15704432-15704451 | Msa0719990:intron | 45.0% |
| !! | AGAGAGTACTCCAGAAAGGA+AGG | + | chr5_1:15704475-15704494 | None:intergenic | 45.0% |
| !! | CACAAGAGAGTACTCCAGAA+AGG | + | chr5_1:15704479-15704498 | None:intergenic | 45.0% |
| ! | TCTGGAGTACTCTCTTGTGT+AGG | - | chr5_1:15704480-15704499 | Msa0719990:intron | 45.0% |
| ! | CTGGAGTACTCTCTTGTGTA+GGG | - | chr5_1:15704481-15704500 | Msa0719990:intron | 45.0% |
| ! | TTGTGTAGGGACTGCAGTTT+TGG | - | chr5_1:15704494-15704513 | Msa0719990:intron | 45.0% |
| ! | AAATCAGCAAAAGCACGCTC+TGG | + | chr5_1:15704963-15704982 | None:intergenic | 45.0% |
| CCCCAAAAATGGAAGAGGTA+AGG | + | chr5_1:15705150-15705169 | None:intergenic | 45.0% | |
| GAAGTCCCCAAAAATGGAAG+AGG | + | chr5_1:15705155-15705174 | None:intergenic | 45.0% | |
| GTCTTGTGCATCCTTTGTGG+TGG | + | chr5_1:15702019-15702038 | None:intergenic | 50.0% | |
| ! | CAGGTCTTGTGCATCCTTTG+TGG | + | chr5_1:15702022-15702041 | None:intergenic | 50.0% |
| AAGACCTGTTACGCGCTCTT+TGG | - | chr5_1:15702034-15702053 | Msa0719990:three_prime_UTR | 50.0% | |
| CGCCACACCTTCAAATCTCA+AGG | - | chr5_1:15702068-15702087 | Msa0719990:three_prime_UTR | 50.0% | |
| ! | TGTTTTCACCGCTCTCCTTC+AGG | - | chr5_1:15702199-15702218 | Msa0719990:exon | 50.0% |
| CCCTTTCCTTGTGAACCAGA+AGG | - | chr5_1:15702627-15702646 | Msa0719990:intron | 50.0% | |
| GGTGACAGTGTCTCATGATC+AGG | + | chr5_1:15703189-15703208 | None:intergenic | 50.0% | |
| TCCTGTAAGTGTAGCTCGGT+TGG | - | chr5_1:15703954-15703973 | Msa0719990:intron | 50.0% | |
| ACCAACCGAGCTACACTTAC+AGG | + | chr5_1:15703958-15703977 | None:intergenic | 50.0% | |
| GCAGGTAGTTTACATGGCTC+TGG | - | chr5_1:15704428-15704447 | Msa0719990:intron | 50.0% | |
| !! | GGTAGTTTACATGGCTCTGG+TGG | - | chr5_1:15704431-15704450 | Msa0719990:intron | 50.0% |
| AAGATCCTGCACAAGGATGG+AGG | + | chr5_1:15704937-15704956 | None:intergenic | 50.0% | |
| CTGCAATGTGGTGCTTCACT+TGG | - | chr5_1:15704989-15705008 | Msa0719990:intron | 50.0% | |
| ! | CAGACCAAAGAGCGCGTAAC+AGG | + | chr5_1:15702041-15702060 | None:intergenic | 55.0% |
| GAGAGCGGTGAAAACAGCGA+AGG | + | chr5_1:15702195-15702214 | None:intergenic | 55.0% | |
| GGGAAGAACCTGAAGGAGAG+CGG | + | chr5_1:15702210-15702229 | None:intergenic | 55.0% | |
| !! | TAGCTCGGTTGGTAGCTCCA+TGG | - | chr5_1:15703965-15703984 | Msa0719990:intron | 55.0% |
| !! | GTAGGGACTGCAGTTTTGGC+TGG | - | chr5_1:15704498-15704517 | Msa0719990:intron | 55.0% |
| TTGGTCCTCCATCCTTGTGC+AGG | - | chr5_1:15704929-15704948 | Msa0719990:intron | 55.0% | |
| CGCAAGATCCTGCACAAGGA+TGG | + | chr5_1:15704940-15704959 | None:intergenic | 55.0% | |
| CTGGCGCAAGATCCTGCACA+AGG | + | chr5_1:15704944-15704963 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15701893 | 15705346 | 15701893 | ID=Msa0719990;Name=Msa0719990 |
| chr5_1 | mRNA | 15701893 | 15705346 | 15701893 | ID=Msa0719990-mRNA-1;Parent=Msa0719990;Name=Msa0719990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=83|1|1|1|1|1|5|312|125 |
| chr5_1 | exon | 15701893 | 15702288 | 15701893 | ID=Msa0719990-mRNA-1:exon:6076;Parent=Msa0719990-mRNA-1 |
| chr5_1 | exon | 15702480 | 15702523 | 15702480 | ID=Msa0719990-mRNA-1:exon:6075;Parent=Msa0719990-mRNA-1 |
| chr5_1 | exon | 15702720 | 15702807 | 15702720 | ID=Msa0719990-mRNA-1:exon:6074;Parent=Msa0719990-mRNA-1 |
| chr5_1 | exon | 15705019 | 15705066 | 15705019 | ID=Msa0719990-mRNA-1:exon:6073;Parent=Msa0719990-mRNA-1 |
| chr5_1 | exon | 15705150 | 15705346 | 15705150 | ID=Msa0719990-mRNA-1:exon:6072;Parent=Msa0719990-mRNA-1 |
| chr5_1 | five_prime_UTR | 15705264 | 15705346 | 15705264 | ID=Msa0719990-mRNA-1:five_prime_utr;Parent=Msa0719990-mRNA-1 |
| chr5_1 | CDS | 15705150 | 15705263 | 15705150 | ID=Msa0719990-mRNA-1:cds;Parent=Msa0719990-mRNA-1 |
| chr5_1 | CDS | 15705019 | 15705066 | 15705019 | ID=Msa0719990-mRNA-1:cds;Parent=Msa0719990-mRNA-1 |
| chr5_1 | CDS | 15702720 | 15702807 | 15702720 | ID=Msa0719990-mRNA-1:cds;Parent=Msa0719990-mRNA-1 |
| chr5_1 | CDS | 15702480 | 15702523 | 15702480 | ID=Msa0719990-mRNA-1:cds;Parent=Msa0719990-mRNA-1 |
| chr5_1 | CDS | 15702205 | 15702288 | 15702205 | ID=Msa0719990-mRNA-1:cds;Parent=Msa0719990-mRNA-1 |
| chr5_1 | three_prime_UTR | 15701893 | 15702204 | 15701893 | ID=Msa0719990-mRNA-1:three_prime_utr;Parent=Msa0719990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
