AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423430 MtrunA17_Chr1g0166821 100.000 458 0 0 1 458 1 458 0.0 939
Msa1423430 MtrunA17_Chr1g0187571 86.237 465 56 3 1 458 1 464 0.0 772
Msa1423430 MtrunA17_Chr7g0261501 77.223 461 95 6 2 452 1 461 0.0 699
Msa1423430 MtrunA17_Chr1g0183631 72.174 460 111 7 2 452 1 452 0.0 666
Msa1423430 MtrunA17_Chr1g0167261 74.731 372 66 4 1 368 1 348 0.0 553
Msa1423430 MtrunA17_Chr2g0329981 64.665 433 122 7 2 424 1 412 0.0 550
Msa1423430 MtrunA17_Chr4g0071031 75.811 339 76 3 2 340 1 333 0.0 548
Msa1423430 MtrunA17_Chr8g0342821 60.851 470 162 8 2 452 1 467 0.0 543
Msa1423430 MtrunA17_Chr8g0390211 61.772 429 145 8 2 420 1 420 0.0 524
Msa1423430 MtrunA17_Chr6g0486611 62.937 429 133 10 2 416 1 417 0.0 524
Msa1423430 MtrunA17_Chr2g0299661 57.816 467 178 8 2 452 1 464 4.85e-180 511
Msa1423430 MtrunA17_Chr1g0146151 54.801 427 177 4 2 420 1 419 4.17e-167 477
Msa1423430 MtrunA17_Chr3g0140071 54.853 443 161 6 2 418 1 430 7.05e-166 474
Msa1423430 MtrunA17_Chr7g0214531 39.649 285 153 6 6 274 31 312 2.24e-60 207
Msa1423430 MtrunA17_Chr3g0140431 38.710 279 158 6 6 274 32 307 2.69e-57 199
Msa1423430 MtrunA17_Chr1g0213321 38.028 284 162 6 6 278 113 393 5.79e-57 199
Msa1423430 MtrunA17_Chr1g0146301 37.276 279 162 6 6 274 118 393 9.15e-56 196
Msa1423430 MtrunA17_Chr7g0253211 37.234 282 161 5 10 278 324 602 1.58e-53 192
Msa1423430 MtrunA17_Chr8g0340491 37.234 282 155 6 10 274 128 404 4.75e-51 183
Msa1423430 MtrunA17_Chr3g0107051 31.050 219 129 8 6 215 17 222 1.48e-13 72.4
Msa1423430 MtrunA17_Chr4g0075541 27.305 282 175 10 12 282 89 351 2.60e-13 71.2
Msa1423430 MtrunA17_Chr5g0405421 25.000 224 151 6 9 224 98 312 1.78e-12 69.3
Msa1423430 MtrunA17_Chr7g0267751 27.189 217 134 8 10 216 135 337 1.04e-11 67.0
Msa1423430 MtrunA17_Chr7g0245031 33.871 124 69 4 108 229 250 362 2.17e-11 65.9
Msa1423430 MtrunA17_Chr7g0272841 24.537 216 144 4 9 214 67 273 4.50e-11 65.1
Msa1423430 MtrunA17_Chr4g0001331 30.667 225 126 12 5 216 15 222 4.93e-11 64.7
Msa1423430 MtrunA17_Chr4g0072831 30.719 153 74 6 8 154 8 134 5.63e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423430 AT3G23340.1 77.293 458 87 4 2 458 1 442 0.0 720
Msa1423430 AT4G14340.1 75.431 464 93 5 2 458 7 456 0.0 716
Msa1423430 AT3G23340.2 74.672 458 85 5 2 458 1 428 0.0 686
Msa1423430 AT5G43320.1 72.500 480 109 8 2 458 1 480 0.0 682
Msa1423430 AT1G04440.1 71.581 468 122 3 2 458 1 468 0.0 674
Msa1423430 AT4G28540.1 71.639 476 107 9 2 452 5 477 0.0 663
Msa1423430 AT1G03930.1 73.517 472 101 9 2 452 1 469 0.0 649
Msa1423430 AT5G44100.1 71.158 475 112 6 2 452 1 474 0.0 629
Msa1423430 AT5G44100.2 71.158 475 112 6 2 452 1 474 0.0 629
Msa1423430 AT4G14340.2 86.196 326 44 1 2 326 7 332 0.0 600
Msa1423430 AT5G43320.2 82.883 333 46 2 2 326 1 330 0.0 573
Msa1423430 AT5G43320.3 82.883 333 46 2 2 326 1 330 0.0 573
Msa1423430 AT1G72710.1 69.895 382 105 5 2 377 1 378 0.0 545
Msa1423430 AT4G26100.1 65.385 416 112 8 2 412 1 389 0.0 539
Msa1423430 AT5G57015.1 77.143 315 69 1 2 316 1 312 0.0 531
Msa1423430 AT2G19470.1 73.795 332 80 3 2 327 1 331 0.0 524
Msa1423430 AT4G28860.1 62.010 408 123 8 2 391 1 394 2.94e-176 500
Msa1423430 AT4G28880.3 72.930 314 85 0 2 315 1 314 3.36e-176 500
Msa1423430 AT4G28880.2 72.930 314 85 0 2 315 1 314 3.36e-176 500
Msa1423430 AT4G28880.1 72.930 314 85 0 2 315 1 314 3.36e-176 500
Msa1423430 AT4G28880.4 72.930 314 85 0 2 315 1 314 3.36e-176 500
Msa1423430 AT4G28860.2 72.188 320 84 2 2 321 1 315 7.54e-176 498
Msa1423430 AT4G08800.1 66.107 298 69 2 2 299 1 266 5.92e-146 418
Msa1423430 AT2G25760.2 40.357 280 152 4 10 274 107 386 6.19e-62 213
Msa1423430 AT2G25760.1 39.643 280 151 5 10 274 107 383 7.47e-59 205
Msa1423430 AT3G13670.1 35.640 289 167 6 6 278 131 416 3.61e-54 192
Msa1423430 AT3G03940.1 36.170 282 164 5 10 278 140 418 1.23e-53 191
Msa1423430 AT5G18190.2 36.170 282 164 5 10 278 130 408 2.03e-53 190
Msa1423430 AT5G18190.1 36.170 282 164 5 10 278 130 408 2.03e-53 190
Msa1423430 AT3G50530.1 25.751 233 138 7 6 220 144 359 1.24e-12 70.5
Msa1423430 AT3G06030.1 26.389 216 140 7 9 214 67 273 7.95e-12 67.8
Msa1423430 AT1G62400.1 26.761 284 174 11 12 282 88 350 1.02e-11 67.0
Msa1423430 AT1G30270.1 27.854 219 133 8 8 215 29 233 3.19e-11 65.9
Msa1423430 AT1G30270.2 27.854 219 133 8 8 215 29 233 4.31e-11 65.1

Find 171 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTAAATTCTGAATTT+TGG 0.096564 tig0025533:-62570 Msa1423430:five_prime_UTR
CTGGAGTAGAACAAAGTAAA+AGG 0.196975 tig0025533:-62707 Msa1423430:five_prime_UTR
TTCAAACTTGGGAGGAAAAT+TGG 0.201290 tig0025533:-62495 Msa1423430:CDS
CATGAAGAGTCTTTATCTTT+AGG 0.208657 tig0025533:-57183 Msa1423430:three_prime_UTR
AGTAGCAGACCAAGCTCTTC+TGG 0.221963 tig0025533:-57601 Msa1423430:CDS
GTCATTTGGAGAAATTTATT+TGG 0.224733 tig0025533:-62466 Msa1423430:CDS
CTACAAAATCTCTACAATTT+CGG 0.245113 tig0025533:-62849 Msa1423430:five_prime_UTR
TTGAAGAAGCATATACAATT+TGG 0.250533 tig0025533:+60980 Msa1423430:intergenic
GAGAAATATCAATTAGCTTT+TGG 0.252061 tig0025533:+57278 Msa1423430:intergenic
TATCACCCTTCCATTGCATT+TGG 0.277778 tig0025533:-57052 Msa1423430:three_prime_UTR
TTTGTAGGAAAGAAGGAAAA+TGG 0.298975 tig0025533:+62865 Msa1423430:intergenic
GAGAGAGAAGAGTAAGGATT+TGG 0.299795 tig0025533:+62791 Msa1423430:intergenic
GTTATGATGGATCTTGTTAT+TGG 0.304007 tig0025533:-62525 Msa1423430:CDS
GTCATGGCCATTGACCTTCT+TGG 0.314864 tig0025533:-60567 Msa1423430:CDS
ATCACCCTTCCATTGCATTT+GGG 0.329797 tig0025533:-57051 Msa1423430:three_prime_UTR
AATCGAAGTAAGAACGAATC+TGG 0.333823 tig0025533:+62668 Msa1423430:intergenic
TTATATTGGGTTTGTTATGA+TGG 0.335108 tig0025533:-62538 Msa1423430:exon
TCATTTGGAGAAATTTATTT+GGG 0.336755 tig0025533:-62465 Msa1423430:intron
AAGCATTGAAGTACCTCTAT+TGG 0.339689 tig0025533:+59016 Msa1423430:intergenic
GAAATTCGAGATAGATTATC+AGG 0.341801 tig0025533:-57910 Msa1423430:CDS
AAAATTGGAAGTGGGTCATT+TGG 0.351862 tig0025533:-62480 Msa1423430:CDS
TGTAGCAACCTGATTCTGAT+AGG 0.353677 tig0025533:-57675 Msa1423430:intron
TCTCTTAAGATATGAATAAT+CGG 0.357282 tig0025533:+58621 Msa1423430:intergenic
ATATTGAAGTATCCACAAAT+TGG 0.362130 tig0025533:-58446 Msa1423430:CDS
AGTTTGACTATGTATTTGAT+TGG 0.365329 tig0025533:-58472 Msa1423430:CDS
ATATCTTAAGAGACTCTTCC+GGG 0.366043 tig0025533:-58611 Msa1423430:CDS
AGAAACACTAACCACATCTT+TGG 0.368375 tig0025533:+57810 Msa1423430:intergenic
GTCTTAAACCCAGGACCATC+TGG 0.374408 tig0025533:-58303 Msa1423430:CDS
GAGCGATTAGAACGGCCTTC+AGG 0.389926 tig0025533:-58279 Msa1423430:intron
CATATCTTAAGAGACTCTTC+CGG 0.390501 tig0025533:-58612 Msa1423430:CDS
CTTCCATGATTATCTAAGCT+TGG 0.392129 tig0025533:-57213 Msa1423430:three_prime_UTR
CCTGTGTTGTGGTCCATTCA+TGG 0.394126 tig0025533:-57301 Msa1423430:three_prime_UTR
ACCGCAATGATCGGCAATAG+TGG 0.400015 tig0025533:+58656 Msa1423430:intergenic
GGGTGGCTCCTAATTTAGAT+TGG 0.401275 tig0025533:-57014 Msa1423430:three_prime_UTR
GGTGGCTCCTAATTTAGATT+GGG 0.404634 tig0025533:-57013 Msa1423430:three_prime_UTR
TTTAGGCCGCAAGGCAAATC+AGG 0.406238 tig0025533:-60295 Msa1423430:intron
TAGGAGCCACCCACTATTAG+AGG 0.407235 tig0025533:+57025 Msa1423430:intergenic
AATCGCTCTCCAGATGGTCC+TGG 0.408461 tig0025533:+58294 Msa1423430:intergenic
TAGAAGACAAATGGAACATA+TGG 0.417936 tig0025533:+56793 Msa1423430:intergenic
CTTTCATTCCTTGCCATGGA+AGG 0.419286 tig0025533:+59092 Msa1423430:intergenic
TCAATTGAGTAGAAGACAAA+TGG 0.419686 tig0025533:+56784 Msa1423430:intergenic
GTAATGGCAGTGCTTCAAAA+AGG 0.426296 tig0025533:-57636 Msa1423430:CDS
AGCTTTGAGCTCCTGTCAAT+TGG 0.426702 tig0025533:-57433 Msa1423430:CDS
TTTAAGACTGGTTTCACACT+TGG 0.427367 tig0025533:+58318 Msa1423430:intergenic
ATTTGGGACCCCTCTAATAG+TGG 0.431719 tig0025533:-57035 Msa1423430:three_prime_UTR
AGAATGTTTGGAGCCTCCTT+AGG 0.434861 tig0025533:-56957 Msa1423430:three_prime_UTR
TATCAGTGAACAAGAATGTT+TGG 0.436233 tig0025533:-56969 Msa1423430:three_prime_UTR
GATAACCTTCTCGAATGAAT+AGG 0.436809 tig0025533:+58587 Msa1423430:intergenic
GGTACGGGTGAAGGATGATT+TGG 0.444496 tig0025533:+57492 Msa1423430:intergenic
GTAGCAGACCAAGCTCTTCT+GGG 0.445063 tig0025533:-57600 Msa1423430:CDS
ACCTCGTGTCCCTGCGGTAC+GGG 0.452524 tig0025533:+57477 Msa1423430:intergenic
CTGCGAGCCCTATCAGAATC+AGG 0.454495 tig0025533:+57667 Msa1423430:intergenic
ACTAACCCGTGTTCTAGAAC+TGG 0.454676 tig0025533:+58421 Msa1423430:intergenic
TTAAATAAGTCTTCGAGACT+TGG 0.457011 tig0025533:+60543 Msa1423430:intergenic
GATGGTCCTGGGTTTAAGAC+TGG 0.457367 tig0025533:+58306 Msa1423430:intergenic
ATTGGTGGAAAATTCAAACT+TGG 0.459721 tig0025533:-62507 Msa1423430:CDS
CTAGAACTGGATCCAATTTG+TGG 0.461995 tig0025533:+58434 Msa1423430:intergenic
TGAGGATGCTTTGTCTTCAC+AGG 0.464666 tig0025533:+61017 Msa1423430:intergenic
TTGACGGAGAGAGAAGAGTA+AGG 0.470852 tig0025533:+62785 Msa1423430:intergenic
TTCTGTATTAATGTTTAACT+AGG 0.471777 tig0025533:-56845 Msa1423430:three_prime_UTR
ATACCTCATATAAAGTGGTC+TGG 0.472466 tig0025533:-60609 Msa1423430:CDS
GAGCTCCTGTCAATTGGTAC+CGG 0.473754 tig0025533:-57427 Msa1423430:CDS
GAACCAAGCTTAGATAATCA+TGG 0.474739 tig0025533:+57210 Msa1423430:intergenic
ATATATTGAGTAAAATGAAC+AGG 0.475550 tig0025533:+57330 Msa1423430:intergenic
TTTCATATTAGGTACCTGTA+TGG 0.476195 tig0025533:+59856 Msa1423430:intergenic
CTCTTAAGATATGAATAATC+GGG 0.477779 tig0025533:+58622 Msa1423430:intergenic
AAATTGTATATGCTTCTTCA+AGG 0.478491 tig0025533:-60978 Msa1423430:CDS
AGCATCTGAAGAAGCATTTG+AGG 0.479553 tig0025533:+57236 Msa1423430:intergenic
TGGAGTAGAACAAAGTAAAA+GGG 0.480649 tig0025533:-62706 Msa1423430:five_prime_UTR
TGTCCCTGCGGTACGGGTGA+AGG 0.481064 tig0025533:+57483 Msa1423430:intergenic
CACCTCGTGTCCCTGCGGTA+CGG 0.484291 tig0025533:+57476 Msa1423430:intergenic
CCAGCTTTCATTCCTTGCCA+TGG 0.488363 tig0025533:+59088 Msa1423430:intergenic
GAAAATGCTTACTCCAATAG+AGG 0.494552 tig0025533:-59029 Msa1423430:intron
TACTTCGATTCAACTAGTGA+TGG 0.500913 tig0025533:-62655 Msa1423430:five_prime_UTR
CGACTAGACCGGCTTTCACT+AGG 0.501636 tig0025533:+57574 Msa1423430:intergenic
AGAGGAAGTGGCTGTTAAGC+TGG 0.503078 tig0025533:-62337 Msa1423430:intron
CTAGGTTCCCCAGAAGAGCT+TGG 0.503285 tig0025533:+57592 Msa1423430:intergenic
TCATCCTTCACCCGTACCGC+AGG 0.504700 tig0025533:-57487 Msa1423430:CDS
AGTAGAGTATATGCACTCTC+GGG 0.504876 tig0025533:-60361 Msa1423430:CDS
GGTCTGCTACTTGATATCAT+AGG 0.504963 tig0025533:+57613 Msa1423430:intergenic
CTTGCAAAGCATATTAGACT+TGG 0.506872 tig0025533:+57078 Msa1423430:intergenic
AGAAGGAAAATGGATGAGAA+TGG 0.508280 tig0025533:+62875 Msa1423430:intergenic
AGATAAAGACTCTTCATGAA+TGG 0.508742 tig0025533:+57188 Msa1423430:intergenic
TATAAAGTGGTCTGGAGTTG+AGG 0.509261 tig0025533:-60601 Msa1423430:CDS
ATCGCTCTCCAGATGGTCCT+GGG 0.510903 tig0025533:+58295 Msa1423430:intergenic
TAAACCCATCAGAAAATTGT+CGG 0.511510 tig0025533:+60314 Msa1423430:intergenic
ACTCCAGACCACTTTATATG+AGG 0.512923 tig0025533:+60606 Msa1423430:intergenic
AAATATGATGTGAATTCTGT+TGG 0.516022 tig0025533:+58679 Msa1423430:intergenic
TATATTTCTATCCTGTGTTG+TGG 0.518820 tig0025533:-57312 Msa1423430:three_prime_UTR
GAGTAGAGTATATGCACTCT+CGG 0.522104 tig0025533:-60362 Msa1423430:CDS
CACATAAGCATATACCATAC+AGG 0.528806 tig0025533:-59870 Msa1423430:intron
TTGGTGGAAAATTCAAACTT+GGG 0.528933 tig0025533:-62506 Msa1423430:CDS
GTAGCAACCTGATTCTGATA+GGG 0.529158 tig0025533:-57674 Msa1423430:intron
TGGATCCAGTTCTAGAACAC+GGG 0.531689 tig0025533:-58426 Msa1423430:intron
GATGATTTGGATTCAAGACC+AGG 0.533754 tig0025533:+57505 Msa1423430:intergenic
ATAAAGTGGTCTGGAGTTGA+GGG 0.536659 tig0025533:-60600 Msa1423430:CDS
CTGCGCAAGGACTGCAGCAT+AGG 0.536788 tig0025533:-57855 Msa1423430:CDS
TGGAGTGTGTGTTTAACAAA+CGG 0.538160 tig0025533:+56813 Msa1423430:intergenic
CTGGAATACCTCATATAAAG+TGG 0.539142 tig0025533:-60614 Msa1423430:CDS
CAGGTATACATTATTGACTA+CGG 0.539979 tig0025533:-59922 Msa1423430:CDS
AGGGAAAACAAGAATCTCAC+TGG 0.540312 tig0025533:-59420 Msa1423430:CDS
TGTGCAAACTCAAGAGGAAG+TGG 0.545993 tig0025533:-62349 Msa1423430:CDS
TATCTTCAAACCGCAATGAT+CGG 0.546276 tig0025533:+58647 Msa1423430:intergenic
AAACCCATCAGAAAATTGTC+GGG 0.547167 tig0025533:+60315 Msa1423430:intergenic
GATAGATTATCAGGTGCAGT+GGG 0.549752 tig0025533:-57901 Msa1423430:CDS
ATGATGGATCTTGTTATTGG+TGG 0.549805 tig0025533:-62522 Msa1423430:CDS
ACTTCGATTCAACTAGTGAT+GGG 0.554162 tig0025533:-62654 Msa1423430:five_prime_UTR
ACTTGGTCCAAGAAGGTCAA+TGG 0.555497 tig0025533:+60560 Msa1423430:intergenic
GCATCTGAAGAAGCATTTGA+GGG 0.557442 tig0025533:+57237 Msa1423430:intergenic
CGGGACCTATTCATTCGAGA+AGG 0.558168 tig0025533:-58592 Msa1423430:intron
TTGGACTCGTAGAGAAGTTG+AGG 0.560210 tig0025533:+60999 Msa1423430:intergenic
AGCTCCTGTCAATTGGTACC+GGG 0.562482 tig0025533:-57426 Msa1423430:CDS
CTTCGAGACTTGGTCCAAGA+AGG 0.563259 tig0025533:+60553 Msa1423430:intergenic
CTTGGGAGGAAAATTGGAAG+TGG 0.565797 tig0025533:-62489 Msa1423430:CDS
CCATGGCAAGGAATGAAAGC+TGG 0.566338 tig0025533:-59088 Msa1423430:CDS
GCTCGCAGTTCCACTCGTAA+TGG 0.566741 tig0025533:-57652 Msa1423430:CDS
TTTGGGACCCCTCTAATAGT+GGG 0.567908 tig0025533:-57034 Msa1423430:three_prime_UTR
CGTTCTAATCGCTCTCCAGA+TGG 0.568142 tig0025533:+58288 Msa1423430:intergenic
ATCGAAGTAAGAACGAATCT+GGG 0.569725 tig0025533:+62669 Msa1423430:intergenic
GTTAACACTCACCTTGGAGT+TGG 0.571211 tig0025533:-59378 Msa1423430:intron
GGGGTCCCAAATGCAATGGA+AGG 0.572247 tig0025533:+57046 Msa1423430:intergenic
TGAAGCACTGCCATTACGAG+TGG 0.574247 tig0025533:+57642 Msa1423430:intergenic
AGAAGGAATGGGTCTGCGCA+AGG 0.575048 tig0025533:-57868 Msa1423430:CDS
TAGATTATCAGGTGCAGTGG+GGG 0.578783 tig0025533:-57899 Msa1423430:CDS
GGATCTGTGCGTGGAGGTGA+AGG 0.579945 tig0025533:+62812 Msa1423430:intergenic
CTGGGGAACCTAGTGAAAGC+CGG 0.580386 tig0025533:-57582 Msa1423430:CDS
TAGATACCTGATTTGCCTTG+CGG 0.583445 tig0025533:+60289 Msa1423430:intergenic
TCGAGATCAATCGACTAGAC+CGG 0.585197 tig0025533:+57563 Msa1423430:intergenic
AGTAAAATGAACAGGTGTGA+AGG 0.585370 tig0025533:+57338 Msa1423430:intergenic
GCAAGTGTTAACACTCACCT+TGG 0.587854 tig0025533:-59384 Msa1423430:CDS
GTGAAACCAGTCTTAAACCC+AGG 0.592219 tig0025533:-58312 Msa1423430:CDS
TGTTAATGTGCAAACTCAAG+AGG 0.593524 tig0025533:-62355 Msa1423430:CDS
TAGAGGGGTCCCAAATGCAA+TGG 0.594829 tig0025533:+57042 Msa1423430:intergenic
AGGAGCCACCCACTATTAGA+GGG 0.595602 tig0025533:+57026 Msa1423430:intergenic
TGCCTCACTCACCAACTCCA+AGG 0.596982 tig0025533:+59367 Msa1423430:intergenic
AGATAGATTATCAGGTGCAG+TGG 0.597787 tig0025533:-57902 Msa1423430:CDS
GTGGAAAATTCAAACTTGGG+AGG 0.601354 tig0025533:-62503 Msa1423430:CDS
CTTCTCGAATGAATAGGTCC+CGG 0.601529 tig0025533:+58593 Msa1423430:intergenic
CCATGAATGGACCACAACAC+AGG 0.608663 tig0025533:+57301 Msa1423430:intergenic
GTGGCTCCTAATTTAGATTG+GGG 0.609750 tig0025533:-57012 Msa1423430:three_prime_UTR
TCCACTATTGCCGATCATTG+CGG 0.612017 tig0025533:-58657 Msa1423430:CDS
TGGGTGAGAAGCGATATTGA+CGG 0.613702 tig0025533:+62769 Msa1423430:intergenic
AATGGAAGTGTGAATGATTG+TGG 0.614836 tig0025533:+62893 Msa1423430:intergenic
GGGACCCCTCTAATAGTGGG+TGG 0.614908 tig0025533:-57031 Msa1423430:three_prime_UTR
AAATGAACAGGTGTGAAGGG+TGG 0.615017 tig0025533:+57342 Msa1423430:intergenic
ACCCGTACCGCAGGGACACG+AGG 0.619215 tig0025533:-57478 Msa1423430:CDS
TGAGGGCGAGTACAATGTCA+TGG 0.623455 tig0025533:-60583 Msa1423430:CDS
TCTGATGGGTTTAGGCCGCA+AGG 0.624373 tig0025533:-60304 Msa1423430:CDS
GGGTCCCAAATGCAATGGAA+GGG 0.636237 tig0025533:+57047 Msa1423430:intergenic
CTAACCACATCTTTGGAAGA+CGG 0.637061 tig0025533:+57817 Msa1423430:intergenic
AGAGATGATCTAGAATCACT+TGG 0.637396 tig0025533:-59225 Msa1423430:CDS
ACTACTCAGAGGGTTCAACC+TGG 0.637692 tig0025533:-57523 Msa1423430:CDS
TTGGATCCAGTTCTAGAACA+CGG 0.640938 tig0025533:-58427 Msa1423430:CDS
TTGGGAGGAAAATTGGAAGT+GGG 0.646604 tig0025533:-62488 Msa1423430:CDS
TAGCAGACCAAGCTCTTCTG+GGG 0.648246 tig0025533:-57599 Msa1423430:CDS
CATCCTTCACCCGTACCGCA+GGG 0.651920 tig0025533:-57486 Msa1423430:CDS
TTGTATATGCTTCTTCAAGG+AGG 0.656173 tig0025533:-60975 Msa1423430:CDS
TAAGGATTTGGATCTGTGCG+TGG 0.660017 tig0025533:+62803 Msa1423430:intergenic
GTAAAATGAACAGGTGTGAA+GGG 0.660908 tig0025533:+57339 Msa1423430:intergenic
GTCGTCTATCGACTACTCAG+AGG 0.661119 tig0025533:-57534 Msa1423430:CDS
TCGTCTATCGACTACTCAGA+GGG 0.669134 tig0025533:-57533 Msa1423430:CDS
TATGCCGTCTTCCAAAGATG+TGG 0.681158 tig0025533:-57821 Msa1423430:intron
GGAAGTGTGAATGATTGTGG+TGG 0.685924 tig0025533:+62896 Msa1423430:intergenic
GTAGAGTATATGCACTCTCG+GGG 0.691454 tig0025533:-60360 Msa1423430:CDS
AAATAAGCGAAAACTGTCGA+CGG 0.692156 tig0025533:-57397 Msa1423430:exon
CATCTGGAGAGCGATTAGAA+CGG 0.692759 tig0025533:-58287 Msa1423430:CDS
GGATTTGGATCTGTGCGTGG+AGG 0.715402 tig0025533:+62806 Msa1423430:intergenic
GGAGCCACCCACTATTAGAG+GGG 0.722209 tig0025533:+57027 Msa1423430:intergenic
GCGACCACCTCGTGTCCCTG+CGG 0.725612 tig0025533:+57471 Msa1423430:intergenic
ATAGATTATCAGGTGCAGTG+GGG 0.730659 tig0025533:-57900 Msa1423430:CDS
CGTACCGCAGGGACACGAGG+TGG 0.738349 tig0025533:-57475 Msa1423430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATAAATTAATTTTC+TGG - tig0025533:56965-56984 Msa1423430:three_prime_UTR 10.0%
!! TTAGTTATATTTGAATAATT+TGG - tig0025533:57297-57316 Msa1423430:three_prime_UTR 10.0%
!!! GAAGTTTATTTTAAAAAAAA+AGG + tig0025533:57819-57838 Msa1423430:intergenic 10.0%
!! TATTTAAATTAGAACTTTAA+TGG + tig0025533:60395-60414 Msa1423430:intergenic 10.0%
!!! AAGTTCTAATTTAAATAAAT+TGG - tig0025533:60398-60417 Msa1423430:intron 10.0%
!!! AGTTCTAATTTAAATAAATT+GGG - tig0025533:60399-60418 Msa1423430:intron 10.0%
!!! AATCCAATTTTTATAAAAAC+AGG + tig0025533:57089-57108 Msa1423430:intergenic 15.0%
!! TGTAATAATTACAAGAAAAT+CGG + tig0025533:59751-59770 Msa1423430:intergenic 15.0%
!! TAAAAAACATGTAAACTTAA+AGG + tig0025533:59935-59954 Msa1423430:intergenic 15.0%
!!! CATCCTGTTTTTATAAAAAT+TGG - tig0025533:57083-57102 Msa1423430:three_prime_UTR 20.0%
!! TCATTTGGAGAAATTTATTT+GGG - tig0025533:57226-57245 Msa1423430:three_prime_UTR 20.0%
!! AAAACTATAAAACACAATTC+AGG + tig0025533:57525-57544 Msa1423430:intergenic 20.0%
!!! TTAGTTGTTATTTTTGTTAG+TGG - tig0025533:57601-57620 Msa1423430:CDS 20.0%
!!! TAGTTGTTATTTTTGTTAGT+GGG - tig0025533:57602-57621 Msa1423430:CDS 20.0%
!!! ATTTTCAATATTCTGATCAT+TGG - tig0025533:57956-57975 Msa1423430:intron 20.0%
!! TGTACTTATGTACTTATTTA+TGG - tig0025533:57990-58009 Msa1423430:intron 20.0%
!! AAGATTTGTATACTTCTATT+AGG - tig0025533:58152-58171 Msa1423430:intron 20.0%
!! ATTCATATATAAATTCTGTG+TGG + tig0025533:58197-58216 Msa1423430:intergenic 20.0%
!! TTATTGAATAAATAGGGAAA+TGG + tig0025533:58420-58439 Msa1423430:intergenic 20.0%
!! AAGCAGTTATTGAATAAATA+GGG + tig0025533:58426-58445 Msa1423430:intergenic 20.0%
!! TAAGCAGTTATTGAATAAAT+AGG + tig0025533:58427-58446 Msa1423430:intergenic 20.0%
!!! ACTTTAAAATATGCAAGTTT+TGG - tig0025533:58540-58559 Msa1423430:intron 20.0%
!! AAATTGAACCGATATAAATT+AGG + tig0025533:58764-58783 Msa1423430:intergenic 20.0%
!! TTAGCATGATGTTAAAAATA+TGG + tig0025533:59256-59275 Msa1423430:intergenic 20.0%
!!! TTCTGCATTTATTGTTATTT+AGG - tig0025533:59436-59455 Msa1423430:intron 20.0%
!!! GATTTTCTTGTAATTATTAC+AGG - tig0025533:59750-59769 Msa1423430:intron 20.0%
!! CAAAATTAAGAAATCCAAAA+GGG + tig0025533:59985-60004 Msa1423430:intergenic 20.0%
!! TCAAAATTAAGAAATCCAAA+AGG + tig0025533:59986-60005 Msa1423430:intergenic 20.0%
!! AATGTAAAGAGATGAAAAAT+TGG + tig0025533:60052-60071 Msa1423430:intergenic 20.0%
!! ATAATAATACTTGTGAAATG+CGG + tig0025533:60781-60800 Msa1423430:intergenic 20.0%
!! AAATTGTGAAAGATGAAAAT+TGG + tig0025533:60941-60960 Msa1423430:intergenic 20.0%
!! TCTCTTAAGATATGAATAAT+CGG + tig0025533:61073-61092 Msa1423430:intergenic 20.0%
!!! TAAATAGTTTTGATTTCTGA+TGG - tig0025533:61504-61523 Msa1423430:intron 20.0%
!! AACCACTTGTTTAAATAATA+TGG - tig0025533:61574-61593 Msa1423430:intron 20.0%
!! ATCCATATTATTTAAACAAG+TGG + tig0025533:61579-61598 Msa1423430:intergenic 20.0%
!!! TTGTCTTTTGTTTTGTTTTT+TGG - tig0025533:61929-61948 Msa1423430:intron 20.0%
!! ATATATTGAGTAAAATGAAC+AGG + tig0025533:62364-62383 Msa1423430:intergenic 20.0%
!! TTCTGTATTAATGTTTAACT+AGG - tig0025533:62846-62865 Msa1423430:five_prime_UTR 20.0%
! CTACAAAATCTCTACAATTT+CGG - tig0025533:56842-56861 Msa1423430:three_prime_UTR 25.0%
!!! TGGATTTTTACTTTTTACAG+TGG - tig0025533:57103-57122 Msa1423430:three_prime_UTR 25.0%
!! AGTGGTTAAATTCTGAATTT+TGG - tig0025533:57121-57140 Msa1423430:three_prime_UTR 25.0%
!! GTGGTTAAATTCTGAATTTT+GGG - tig0025533:57122-57141 Msa1423430:three_prime_UTR 25.0%
!! TGGTTAAATTCTGAATTTTG+GGG - tig0025533:57123-57142 Msa1423430:three_prime_UTR 25.0%
!!! TTTGGGGTGTTTTTTTATAT+TGG - tig0025533:57139-57158 Msa1423430:three_prime_UTR 25.0%
!!! TTGGGGTGTTTTTTTATATT+GGG - tig0025533:57140-57159 Msa1423430:three_prime_UTR 25.0%
!!! TTATATTGGGTTTGTTATGA+TGG - tig0025533:57153-57172 Msa1423430:three_prime_UTR 25.0%
! GTCATTTGGAGAAATTTATT+TGG - tig0025533:57225-57244 Msa1423430:three_prime_UTR 25.0%
!! AATTTGGATTTGTTTGTTTC+AGG - tig0025533:57313-57332 Msa1423430:three_prime_UTR 25.0%
!!! AGTTGTTATTTTTGTTAGTG+GGG - tig0025533:57603-57622 Msa1423430:CDS 25.0%
! ATCTTGACAGAAATAGAATA+AGG - tig0025533:58300-58319 Msa1423430:CDS 25.0%
!! TTGAAGAAGCATATACAATT+TGG + tig0025533:58714-58733 Msa1423430:intergenic 25.0%
! AAATTGTATATGCTTCTTCA+AGG - tig0025533:58713-58732 Msa1423430:intron 25.0%
! TTTGCCTTCCTAATTTATAT+CGG - tig0025533:58753-58772 Msa1423430:intron 25.0%
!!! TATATCGGTTCAATTTCTTT+TGG - tig0025533:58768-58787 Msa1423430:intron 25.0%
!! AAACAAATCACTATTTTCTG+CGG - tig0025533:58948-58967 Msa1423430:intron 25.0%
!!! CGTTAATTTGTATTTTAAGC+TGG - tig0025533:59058-59077 Msa1423430:CDS 25.0%
! TTTATTCCTGTAATTGACAT+CGG + tig0025533:59570-59589 Msa1423430:intergenic 25.0%
!! TTTTACCGAAAAACAAGAAA+TGG - tig0025533:59615-59634 Msa1423430:intron 25.0%
!!! TACTTCCATTTCTTGTTTTT+CGG + tig0025533:59623-59642 Msa1423430:intergenic 25.0%
! ATGGAAGTAGAAAATAGAAA+TGG - tig0025533:59634-59653 Msa1423430:intron 25.0%
! AATAGAAATGGAAACCAAAT+AGG - tig0025533:59646-59665 Msa1423430:intron 25.0%
! AAAAGAAATAAAGGCCTATT+TGG + tig0025533:59663-59682 Msa1423430:intergenic 25.0%
!!! AAATAGGCCTTTATTTCTTT+TGG - tig0025533:59662-59681 Msa1423430:intron 25.0%
!!! CACAATAAATTTTAGTGAAC+GGG + tig0025533:59702-59721 Msa1423430:intergenic 25.0%
!!! GCACAATAAATTTTAGTGAA+CGG + tig0025533:59703-59722 Msa1423430:intergenic 25.0%
! TACCTAATATGAAATTTGGT+TGG - tig0025533:59844-59863 Msa1423430:intron 25.0%
! ACCTAATATGAAATTTGGTT+GGG - tig0025533:59845-59864 Msa1423430:intron 25.0%
! CAAAAGGGAAAAAAATACAA+AGG + tig0025533:59970-59989 Msa1423430:intergenic 25.0%
!!! CTTTGTATTTTTTTCCCTTT+TGG - tig0025533:59968-59987 Msa1423430:intron 25.0%
! AATTGGATATGAAATATCAC+AGG + tig0025533:60035-60054 Msa1423430:intergenic 25.0%
!!! TATATCGACTTTTTCTAACT+TGG - tig0025533:60133-60152 Msa1423430:intron 25.0%
!!! TGCACTATTTTTCTTTCAAT+AGG - tig0025533:60251-60270 Msa1423430:intron 25.0%
!!! GCACTATTTTTCTTTCAATA+GGG - tig0025533:60252-60271 Msa1423430:intron 25.0%
! TTTGGATAATTGGTTATGTT+AGG - tig0025533:60727-60746 Msa1423430:intron 25.0%
! TTTGCAAAGAATTTACAGTT+TGG - tig0025533:60958-60977 Msa1423430:intron 25.0%
! AAATATGATGTGAATTCTGT+TGG + tig0025533:61015-61034 Msa1423430:intergenic 25.0%
! CTCTTAAGATATGAATAATC+GGG + tig0025533:61072-61091 Msa1423430:intergenic 25.0%
!! TTTAGGATAACTTTCAACTA+AGG + tig0025533:61155-61174 Msa1423430:intergenic 25.0%
!!! AAAATGCACAATTTCTAGTA+AGG + tig0025533:61190-61209 Msa1423430:intergenic 25.0%
!! ACTAGAAATTGTGCATTTTT+AGG - tig0025533:61191-61210 Msa1423430:intron 25.0%
! AGTTTGACTATGTATTTGAT+TGG - tig0025533:61219-61238 Msa1423430:intron 25.0%
!! ATATTGAAGTATCCACAAAT+TGG - tig0025533:61245-61264 Msa1423430:intron 25.0%
! AGATGAAGATGAAAACTAAT+AGG + tig0025533:61299-61318 Msa1423430:intergenic 25.0%
!!! TCATCTTCATCTTTAAGTTT+TGG - tig0025533:61307-61326 Msa1423430:intron 25.0%
!!! CTAATCCCTTTTATTTTAGT+CGG - tig0025533:61678-61697 Msa1423430:intron 25.0%
!!! CTAATCCCTTTTATTTTAGT+CGG - tig0025533:61678-61697 Msa1423430:intron 25.0%
!! CACATGATTTTCTTTTTGTA+TGG - tig0025533:61905-61924 Msa1423430:intron 25.0%
!!! GAGAAATATCAATTAGCTTT+TGG + tig0025533:62416-62435 Msa1423430:intergenic 25.0%
!!! ATTCTCTACAATTTTTCAGT+TGG - tig0025533:62572-62591 Msa1423430:five_prime_UTR 25.0%
!!! AATTTTTCAGTTGGACAAAA+GGG - tig0025533:62581-62600 Msa1423430:five_prime_UTR 25.0%
TTTGTAGGAAAGAAGGAAAA+TGG + tig0025533:56829-56848 None:intergenic 30.0%
! TAGAGATTTTGTAGGAAAGA+AGG + tig0025533:56836-56855 None:intergenic 30.0%
! CGAAATTGTAGAGATTTTGT+AGG + tig0025533:56844-56863 None:intergenic 30.0%
TGGAGTAGAACAAAGTAAAA+GGG - tig0025533:56985-57004 Msa1423430:three_prime_UTR 30.0%
!! GTTATGATGGATCTTGTTAT+TGG - tig0025533:57166-57185 Msa1423430:three_prime_UTR 30.0%
ATTGGTGGAAAATTCAAACT+TGG - tig0025533:57184-57203 Msa1423430:three_prime_UTR 30.0%
TTGGTGGAAAATTCAAACTT+GGG - tig0025533:57185-57204 Msa1423430:three_prime_UTR 30.0%
CTAGGTAGTTGACATTTAAA+TGG - tig0025533:57572-57591 Msa1423430:CDS 30.0%
AAATAGTGATCGGAGTAATA+AGG + tig0025533:57650-57669 Msa1423430:intergenic 30.0%
CATCATCGTTAAATAGTGAT+CGG + tig0025533:57660-57679 Msa1423430:intergenic 30.0%
ATAGGTATATTGTCCAATTG+CGG + tig0025533:57726-57745 Msa1423430:intergenic 30.0%
AAAATGCAGGTAATGTGTAT+GGG + tig0025533:57941-57960 Msa1423430:intergenic 30.0%
GATCAGAATATTGAAAATGC+AGG + tig0025533:57954-57973 Msa1423430:intergenic 30.0%
TAACATTTACAGAACTGAAG+GGG + tig0025533:58075-58094 Msa1423430:intergenic 30.0%
GTAACATTTACAGAACTGAA+GGG + tig0025533:58076-58095 Msa1423430:intergenic 30.0%
AGTAACATTTACAGAACTGA+AGG + tig0025533:58077-58096 Msa1423430:intergenic 30.0%
TAAGATATGAACTAAGTCGT+TGG - tig0025533:58097-58116 Msa1423430:intron 30.0%
GTATACAAATCTTGAAGCAA+GGG + tig0025533:58145-58164 Msa1423430:intergenic 30.0%
AGTATACAAATCTTGAAGCA+AGG + tig0025533:58146-58165 Msa1423430:intergenic 30.0%
AAGAATGATTCTCAAAACAG+AGG - tig0025533:58247-58266 Msa1423430:intron 30.0%
GCTTTATGATGGTTATTTGT+TGG - tig0025533:58569-58588 Msa1423430:intron 30.0%
! ACTTTTCTCTACGTTTTCAT+TGG - tig0025533:58640-58659 Msa1423430:CDS 30.0%
TGAACCGATATAAATTAGGA+AGG + tig0025533:58760-58779 Msa1423430:intergenic 30.0%
TTAAATAAGTCTTCGAGACT+TGG + tig0025533:59151-59170 Msa1423430:intergenic 30.0%
AAAGTGGTAATTCACATTGA+AGG + tig0025533:59296-59315 Msa1423430:intergenic 30.0%
ATACTCTACTCTGTTTATCT+AGG + tig0025533:59320-59339 Msa1423430:intergenic 30.0%
TAAACCCATCAGAAAATTGT+CGG + tig0025533:59380-59399 Msa1423430:intergenic 30.0%
TATGTCATGCTTAAATTCTC+TGG + tig0025533:59472-59491 Msa1423430:intergenic 30.0%
! TTTTAGTGAACGGGATTATA+TGG + tig0025533:59693-59712 Msa1423430:intergenic 30.0%
AAAATCGGAAAACTTGACAT+AGG + tig0025533:59736-59755 Msa1423430:intergenic 30.0%
! CAGGTATACATTATTGACTA+CGG - tig0025533:59769-59788 Msa1423430:intron 30.0%
TTTCATATTAGGTACCTGTA+TGG + tig0025533:59838-59857 Msa1423430:intergenic 30.0%
CAGGTACCTAATATGAAATT+TGG - tig0025533:59840-59859 Msa1423430:intron 30.0%
TCCCAACCAAATTTCATATT+AGG + tig0025533:59849-59868 Msa1423430:intergenic 30.0%
CAATATACTCAAGGAATCAA+AGG + tig0025533:59887-59906 Msa1423430:intergenic 30.0%
ATCTGTTATTGCACATTCAT+TGG + tig0025533:60114-60133 Msa1423430:intergenic 30.0%
CATCATTGTACTTTCTAACT+TGG - tig0025533:60556-60575 Msa1423430:CDS 30.0%
TAATTGGTTATGTTAGGATG+AGG - tig0025533:60733-60752 Msa1423430:intron 30.0%
! TAAGGTACTTTCAAAGCTTT+AGG + tig0025533:61172-61191 Msa1423430:intergenic 30.0%
TAGATTTCAGAACTTGCAAT+AGG + tig0025533:61444-61463 Msa1423430:intergenic 30.0%
GTTTATATGATACACTGCAA+AGG - tig0025533:61599-61618 Msa1423430:intron 30.0%
AATGAAAAGACTCTGATCAT+TGG - tig0025533:61648-61667 Msa1423430:intron 30.0%
CGACTAAAATAAAAGGGATT+AGG + tig0025533:61680-61699 Msa1423430:intergenic 30.0%
CTTGTCCGACTAAAATAAAA+GGG + tig0025533:61686-61705 Msa1423430:intergenic 30.0%
TCTTGTCCGACTAAAATAAA+AGG + tig0025533:61687-61706 Msa1423430:intergenic 30.0%
AATGAAAAGACTCTGATCAT+TGG - tig0025533:61648-61667 Msa1423430:intron 30.0%
CGACTAAAATAAAAGGGATT+AGG + tig0025533:61680-61699 Msa1423430:intergenic 30.0%
CTTGTCCGACTAAAATAAAA+GGG + tig0025533:61686-61705 Msa1423430:intergenic 30.0%
TCTTGTCCGACTAAAATAAA+AGG + tig0025533:61687-61706 Msa1423430:intergenic 30.0%
!! TTTCGCTTATTTTCTTTTCC+CGG + tig0025533:62286-62305 Msa1423430:intergenic 30.0%
! TATATTTCTATCCTGTGTTG+TGG - tig0025533:62379-62398 Msa1423430:intron 30.0%
AGATAAAGACTCTTCATGAA+TGG + tig0025533:62506-62525 Msa1423430:intergenic 30.0%
CATGAAGAGTCTTTATCTTT+AGG - tig0025533:62508-62527 Msa1423430:CDS 30.0%
!! CAATTTTTCAGTTGGACAAA+AGG - tig0025533:62580-62599 Msa1423430:five_prime_UTR 30.0%
! GTTTTACCCCAATCTAAATT+AGG + tig0025533:62688-62707 Msa1423430:intergenic 30.0%
TATCAGTGAACAAGAATGTT+TGG - tig0025533:62722-62741 Msa1423430:five_prime_UTR 30.0%
AAAAACTTCAAAACCTAAGG+AGG + tig0025533:62750-62769 Msa1423430:intergenic 30.0%
AGCAAAAACTTCAAAACCTA+AGG + tig0025533:62753-62772 Msa1423430:intergenic 30.0%
!!! TTAGGTTTTGAAGTTTTTGC+TGG - tig0025533:62752-62771 Msa1423430:five_prime_UTR 30.0%
TAGAAGACAAATGGAACATA+TGG + tig0025533:62901-62920 Msa1423430:intergenic 30.0%
! AATGGAAGTGTGAATGATTG+TGG + tig0025533:56801-56820 None:intergenic 35.0%
AGAAGGAAAATGGATGAGAA+TGG + tig0025533:56819-56838 None:intergenic 35.0%
CTGGAGTAGAACAAAGTAAA+AGG - tig0025533:56984-57003 Msa1423430:three_prime_UTR 35.0%
ATCGAAGTAAGAACGAATCT+GGG + tig0025533:57025-57044 Msa1423430:intergenic 35.0%
AATCGAAGTAAGAACGAATC+TGG + tig0025533:57026-57045 Msa1423430:intergenic 35.0%
TACTTCGATTCAACTAGTGA+TGG - tig0025533:57036-57055 Msa1423430:three_prime_UTR 35.0%
ACTTCGATTCAACTAGTGAT+GGG - tig0025533:57037-57056 Msa1423430:three_prime_UTR 35.0%
!! ATGATGGATCTTGTTATTGG+TGG - tig0025533:57169-57188 Msa1423430:three_prime_UTR 35.0%
TTCAAACTTGGGAGGAAAAT+TGG - tig0025533:57196-57215 Msa1423430:three_prime_UTR 35.0%
AAAATTGGAAGTGGGTCATT+TGG - tig0025533:57211-57230 Msa1423430:three_prime_UTR 35.0%
TGTTAATGTGCAAACTCAAG+AGG - tig0025533:57336-57355 Msa1423430:three_prime_UTR 35.0%
!! AGTTTTGACCTGAATTGTGT+TGG - tig0025533:57539-57558 Msa1423430:CDS 35.0%
GAGTAATAAGGAGATCATGA+TGG + tig0025533:57638-57657 Msa1423430:intergenic 35.0%
ATGATGAGTAGAGTTTGGTA+GGG - tig0025533:57677-57696 Msa1423430:intron 35.0%
TAGGTATATTGTCCAATTGC+GGG + tig0025533:57725-57744 Msa1423430:intergenic 35.0%
AATGTAATCACATGTGACAC+TGG + tig0025533:57787-57806 Msa1423430:intergenic 35.0%
CTGTGTCAATGCTTCATTAT+CGG - tig0025533:57858-57877 Msa1423430:CDS 35.0%
GAAAATGCAGGTAATGTGTA+TGG + tig0025533:57942-57961 Msa1423430:intergenic 35.0%
CATAATTAAGCAGACTCATG+TGG + tig0025533:58048-58067 Msa1423430:intergenic 35.0%
ATTAGGCATGTGATTGAAAC+TGG - tig0025533:58169-58188 Msa1423430:intron 35.0%
AATCCAAAATAAGTACCCAC+TGG - tig0025533:58385-58404 Msa1423430:intron 35.0%
AAATGGAATGAAAAGCCAGT+GGG + tig0025533:58403-58422 Msa1423430:intergenic 35.0%
AATGACACTGTCTCAAAGTT+GGG - tig0025533:58515-58534 Msa1423430:intron 35.0%
!! TTTGGCTTTGTGCTTTATGA+TGG - tig0025533:58558-58577 Msa1423430:intron 35.0%
GCACTTCGAGAAAAAAACTT+AGG + tig0025533:58598-58617 Msa1423430:intergenic 35.0%
TTGTATATGCTTCTTCAAGG+AGG - tig0025533:58716-58735 Msa1423430:intron 35.0%
!! CCAAAAGCGTTGTTAAATAG+CGG - tig0025533:58796-58815 Msa1423430:intron 35.0%
GTTGTCAAACAGTGCTATAA+CGG - tig0025533:58896-58915 Msa1423430:intron 35.0%
ATGTAAACAGATGCAAATCC+TGG + tig0025533:58997-59016 Msa1423430:intergenic 35.0%
CTGGAATACCTCATATAAAG+TGG - tig0025533:59077-59096 Msa1423430:CDS 35.0%
ATACCTCATATAAAGTGGTC+TGG - tig0025533:59082-59101 Msa1423430:CDS 35.0%
CTCTGTTTATCTAGGTAAAG+TGG + tig0025533:59312-59331 Msa1423430:intergenic 35.0%
AAACCCATCAGAAAATTGTC+GGG + tig0025533:59379-59398 Msa1423430:intergenic 35.0%
!!! GACAATTTTCTGATGGGTTT+AGG - tig0025533:59379-59398 Msa1423430:CDS 35.0%
CTATTTCCGATGTCAATTAC+AGG - tig0025533:59561-59580 Msa1423430:intron 35.0%
!!! GATCACGATACTTTTTTGCA+AGG + tig0025533:59795-59814 Msa1423430:intergenic 35.0%
CACATAAGCATATACCATAC+AGG - tig0025533:59821-59840 Msa1423430:intron 35.0%
AGACAAGGACAATATACTCA+AGG + tig0025533:59896-59915 Msa1423430:intergenic 35.0%
AACTGTAGAAAGATGAGACA+AGG + tig0025533:59911-59930 Msa1423430:intergenic 35.0%
GCACAAAACTCAATGAAAAC+TGG + tig0025533:60092-60111 Msa1423430:intergenic 35.0%
! AGAGATGATCTAGAATCACT+TGG - tig0025533:60466-60485 Msa1423430:intron 35.0%
!! GTACTCATGTACTTTTTGAG+AGG - tig0025533:60493-60512 Msa1423430:CDS 35.0%
!! TCATGTACTTTTTGAGAGGA+AGG - tig0025533:60497-60516 Msa1423430:CDS 35.0%
!! TTTTTGAGAGGAAGGTTAGT+TGG - tig0025533:60505-60524 Msa1423430:CDS 35.0%
GAAAATGCTTACTCCAATAG+AGG - tig0025533:60662-60681 Msa1423430:intron 35.0%
!! AAGCATTGAAGTACCTCTAT+TGG + tig0025533:60678-60697 Msa1423430:intergenic 35.0%
AATACTCTACTTCGATGCTT+TGG - tig0025533:60709-60728 Msa1423430:intron 35.0%
! ACTTCGATGCTTTGGATAAT+TGG - tig0025533:60717-60736 Msa1423430:intron 35.0%
TGCATGATGCAGAAACATAA+TGG + tig0025533:60839-60858 Msa1423430:intergenic 35.0%
ACAGTTTGGATTTCTGTAAC+AGG - tig0025533:60972-60991 Msa1423430:intron 35.0%
TATCTTCAAACCGCAATGAT+CGG + tig0025533:61047-61066 Msa1423430:intergenic 35.0%
CATATCTTAAGAGACTCTTC+CGG - tig0025533:61079-61098 Msa1423430:intron 35.0%
ATATCTTAAGAGACTCTTCC+GGG - tig0025533:61080-61099 Msa1423430:intron 35.0%
GATAACCTTCTCGAATGAAT+AGG + tig0025533:61107-61126 Msa1423430:intergenic 35.0%
!! TTTAAGACTGGTTTCACACT+TGG + tig0025533:61376-61395 Msa1423430:intergenic 35.0%
TGCAATAGGAATAAACCTGA+AGG + tig0025533:61430-61449 Msa1423430:intergenic 35.0%
AGAAACACTAACCACATCTT+TGG + tig0025533:61884-61903 Msa1423430:intergenic 35.0%
! AATTTCTTGTTGTCCAACAC+TGG - tig0025533:61988-62007 Msa1423430:intron 35.0%
AAATAAGCGAAAACTGTCGA+CGG - tig0025533:62294-62313 Msa1423430:intron 35.0%
GGTGGATGTCTCAAAAAAAA+AGG + tig0025533:62334-62353 Msa1423430:intergenic 35.0%
GTAAAATGAACAGGTGTGAA+GGG + tig0025533:62355-62374 Msa1423430:intergenic 35.0%
AGTAAAATGAACAGGTGTGA+AGG + tig0025533:62356-62375 Msa1423430:intergenic 35.0%
!!! AATTAGCTTTTGGCCATGAA+TGG + tig0025533:62406-62425 Msa1423430:intergenic 35.0%
CTTCCATGATTATCTAAGCT+TGG - tig0025533:62478-62497 Msa1423430:CDS 35.0%
GAACCAAGCTTAGATAATCA+TGG + tig0025533:62484-62503 Msa1423430:intergenic 35.0%
CTTGCAAAGCATATTAGACT+TGG + tig0025533:62616-62635 Msa1423430:intergenic 35.0%
TGGAGTGTGTGTTTAACAAA+CGG + tig0025533:62881-62900 Msa1423430:intergenic 35.0%
GAGAGAGAAGAGTAAGGATT+TGG + tig0025533:56903-56922 Msa1423430:intergenic 40.0%
GTGGAAAATTCAAACTTGGG+AGG - tig0025533:57188-57207 Msa1423430:three_prime_UTR 40.0%
TTGGGAGGAAAATTGGAAGT+GGG - tig0025533:57203-57222 Msa1423430:three_prime_UTR 40.0%
AGCAATCACCAACACAATTC+AGG + tig0025533:57550-57569 Msa1423430:intergenic 40.0%
!! TGTGTTGGTGATTGCTTACT+AGG - tig0025533:57554-57573 Msa1423430:CDS 40.0%
! CGATGATGATGAGTAGAGTT+TGG - tig0025533:57672-57691 Msa1423430:CDS 40.0%
GATGATGAGTAGAGTTTGGT+AGG - tig0025533:57676-57695 Msa1423430:intron 40.0%
! GCACAGACACTTTTGATCAA+AGG - tig0025533:57756-57775 Msa1423430:intron 40.0%
CAATGCTTCATTATCGGCAT+TGG - tig0025533:57864-57883 Msa1423430:CDS 40.0%
GTCATGCATATAGACACAAG+GGG + tig0025533:58026-58045 Msa1423430:intergenic 40.0%
GGTCATGCATATAGACACAA+GGG + tig0025533:58027-58046 Msa1423430:intergenic 40.0%
TGGTCATGCATATAGACACA+AGG + tig0025533:58028-58047 Msa1423430:intergenic 40.0%
AAGCTCTTGAACATCTTGGT+GGG + tig0025533:58344-58363 Msa1423430:intergenic 40.0%
! AAGCCAGTGGGTACTTATTT+TGG + tig0025533:58391-58410 Msa1423430:intergenic 40.0%
GAAATGGAATGAAAAGCCAG+TGG + tig0025533:58404-58423 Msa1423430:intergenic 40.0%
!! CAACTTTGAGACAGTGTCAT+TGG + tig0025533:58516-58535 Msa1423430:intergenic 40.0%
CAATGACACTGTCTCAAAGT+TGG - tig0025533:58514-58533 Msa1423430:intron 40.0%
!!! TACGTTTTCATTGGCTTCTC+AGG - tig0025533:58649-58668 Msa1423430:CDS 40.0%
! CCGCTATTTAACAACGCTTT+TGG + tig0025533:58799-58818 Msa1423430:intergenic 40.0%
ATAGCAGCGCTATAGTTTAG+TGG - tig0025533:58821-58840 Msa1423430:intron 40.0%
ACTCCAGACCACTTTATATG+AGG + tig0025533:59088-59107 Msa1423430:intergenic 40.0%
! TATAAAGTGGTCTGGAGTTG+AGG - tig0025533:59090-59109 Msa1423430:CDS 40.0%
! ATAAAGTGGTCTGGAGTTGA+GGG - tig0025533:59091-59110 Msa1423430:CDS 40.0%
GAGTAGAGTATATGCACTCT+CGG - tig0025533:59329-59348 Msa1423430:intron 40.0%
AGTAGAGTATATGCACTCTC+GGG - tig0025533:59330-59349 Msa1423430:intron 40.0%
! AAAGCCCGACAATTTTCTGA+TGG - tig0025533:59372-59391 Msa1423430:intron 40.0%
! AAGCCCGACAATTTTCTGAT+GGG - tig0025533:59373-59392 Msa1423430:intron 40.0%
! TAGATACCTGATTTGCCTTG+CGG + tig0025533:59405-59424 Msa1423430:intergenic 40.0%
TTGAAGAATGCCAGTTAGAG+AGG + tig0025533:59495-59514 Msa1423430:intergenic 40.0%
! ACTGGCATTCTTCAAGTTCT+AGG - tig0025533:59500-59519 Msa1423430:intron 40.0%
! GGTGCTGCCAAAAGAAATAA+AGG + tig0025533:59672-59691 Msa1423430:intergenic 40.0%
TTCCACTCCTGTTACATGAA+TGG - tig0025533:60227-60246 Msa1423430:intron 40.0%
AACCATTCATGTAACAGGAG+TGG + tig0025533:60232-60251 Msa1423430:intergenic 40.0%
AGTGCAACCATTCATGTAAC+AGG + tig0025533:60237-60256 Msa1423430:intergenic 40.0%
AGGGAAAACAAGAATCTCAC+TGG - tig0025533:60271-60290 Msa1423430:intron 40.0%
! TTTCTTTTTCCAGCCTTCCA+TGG - tig0025533:60586-60605 Msa1423430:CDS 40.0%
CTAGAACTGGATCCAATTTG+TGG + tig0025533:61260-61279 Msa1423430:intergenic 40.0%
!! TTGGATCCAGTTCTAGAACA+CGG - tig0025533:61264-61283 Msa1423430:intron 40.0%
ATAGATTATCAGGTGCAGTG+GGG - tig0025533:61791-61810 Msa1423430:intron 40.0%
!! GGGCATTTTCAAGAAGGAAT+GGG - tig0025533:61812-61831 Msa1423430:intron 40.0%
! CTAACCACATCTTTGGAAGA+CGG + tig0025533:61877-61896 Msa1423430:intergenic 40.0%
TTGCTACAAAGATCCAGTGT+TGG + tig0025533:62004-62023 Msa1423430:intergenic 40.0%
TGTAGCAACCTGATTCTGAT+AGG - tig0025533:62016-62035 Msa1423430:intron 40.0%
GTAGCAACCTGATTCTGATA+GGG - tig0025533:62017-62036 Msa1423430:intron 40.0%
GTAATGGCAGTGCTTCAAAA+AGG - tig0025533:62055-62074 Msa1423430:intron 40.0%
! GGTCTGCTACTTGATATCAT+AGG + tig0025533:62081-62100 Msa1423430:intergenic 40.0%
! GATGATTTGGATTCAAGACC+AGG + tig0025533:62189-62208 Msa1423430:intergenic 40.0%
!! GCATCTGAAGAAGCATTTGA+GGG + tig0025533:62457-62476 Msa1423430:intergenic 40.0%
!! AGCATCTGAAGAAGCATTTG+AGG + tig0025533:62458-62477 Msa1423430:intergenic 40.0%
TATCACCCTTCCATTGCATT+TGG - tig0025533:62639-62658 Msa1423430:five_prime_UTR 40.0%
ATCACCCTTCCATTGCATTT+GGG - tig0025533:62640-62659 Msa1423430:five_prime_UTR 40.0%
GGTGGCTCCTAATTTAGATT+GGG - tig0025533:62678-62697 Msa1423430:five_prime_UTR 40.0%
GTGGCTCCTAATTTAGATTG+GGG - tig0025533:62679-62698 Msa1423430:five_prime_UTR 40.0%
! GGAAGTGTGAATGATTGTGG+TGG + tig0025533:56798-56817 None:intergenic 45.0%
TAAGGATTTGGATCTGTGCG+TGG + tig0025533:56891-56910 Msa1423430:intergenic 45.0%
TTGACGGAGAGAGAAGAGTA+AGG + tig0025533:56909-56928 Msa1423430:intergenic 45.0%
TGGGTGAGAAGCGATATTGA+CGG + tig0025533:56925-56944 Msa1423430:intergenic 45.0%
CTTGGGAGGAAAATTGGAAG+TGG - tig0025533:57202-57221 Msa1423430:three_prime_UTR 45.0%
TGTGCAAACTCAAGAGGAAG+TGG - tig0025533:57342-57361 Msa1423430:three_prime_UTR 45.0%
GCTGGTGAGTGAAGTTGTTA+TGG - tig0025533:57372-57391 Msa1423430:three_prime_UTR 45.0%
CTTTCTCTCTTACCCGCAAT+TGG - tig0025533:57710-57729 Msa1423430:intron 45.0%
GTCTGTGCTACAGTGGATAT+AGG + tig0025533:57744-57763 Msa1423430:intergenic 45.0%
!! CAAAAGTGTCTGTGCTACAG+TGG + tig0025533:57751-57770 Msa1423430:intergenic 45.0%
GTGTATGGGTACAGGTACTT+AGG + tig0025533:57927-57946 Msa1423430:intergenic 45.0%
CAGGTAATGTGTATGGGTAC+AGG + tig0025533:57935-57954 Msa1423430:intergenic 45.0%
CAAGCTCTTGAACATCTTGG+TGG + tig0025533:58345-58364 Msa1423430:intergenic 45.0%
CACCAAGATGTTCAAGAGCT+TGG - tig0025533:58343-58362 Msa1423430:intron 45.0%
GACCAAGCTCTTGAACATCT+TGG + tig0025533:58348-58367 Msa1423430:intergenic 45.0%
TGAGGATGCTTTGTCTTCAC+AGG + tig0025533:58677-58696 Msa1423430:intergenic 45.0%
TTGGACTCGTAGAGAAGTTG+AGG + tig0025533:58695-58714 Msa1423430:intergenic 45.0%
ACTTGGTCCAAGAAGGTCAA+TGG + tig0025533:59134-59153 Msa1423430:intergenic 45.0%
GTAGAGTATATGCACTCTCG+GGG - tig0025533:59331-59350 Msa1423430:intron 45.0%
GCATGACATACCTCTCTAAC+TGG - tig0025533:59482-59501 Msa1423430:intron 45.0%
GCAAGTGTTAACACTCACCT+TGG - tig0025533:60307-60326 Msa1423430:CDS 45.0%
GTTAACACTCACCTTGGAGT+TGG - tig0025533:60313-60332 Msa1423430:CDS 45.0%
CTTTCATTCCTTGCCATGGA+AGG + tig0025533:60602-60621 Msa1423430:intergenic 45.0%
TCCACTATTGCCGATCATTG+CGG - tig0025533:61034-61053 Msa1423430:intron 45.0%
CTTCTCGAATGAATAGGTCC+CGG + tig0025533:61101-61120 Msa1423430:intergenic 45.0%
!! TGGATCCAGTTCTAGAACAC+GGG - tig0025533:61265-61284 Msa1423430:intron 45.0%
!! ACTAACCCGTGTTCTAGAAC+TGG + tig0025533:61273-61292 Msa1423430:intergenic 45.0%
GTGAAACCAGTCTTAAACCC+AGG - tig0025533:61379-61398 Msa1423430:intron 45.0%
CATCTGGAGAGCGATTAGAA+CGG - tig0025533:61404-61423 Msa1423430:intron 45.0%
TAGATTATCAGGTGCAGTGG+GGG - tig0025533:61792-61811 Msa1423430:intron 45.0%
!! GGGGCATTTTCAAGAAGGAA+TGG - tig0025533:61811-61830 Msa1423430:intron 45.0%
TATGCCGTCTTCCAAAGATG+TGG - tig0025533:61870-61889 Msa1423430:intron 45.0%
TCGAGATCAATCGACTAGAC+CGG + tig0025533:62131-62150 Msa1423430:intergenic 45.0%
! TCGTCTATCGACTACTCAGA+GGG - tig0025533:62158-62177 Msa1423430:intron 45.0%
!! AGCTTTGAGCTCCTGTCAAT+TGG - tig0025533:62258-62277 Msa1423430:intron 45.0%
! TTTTCCCGGTACCAATTGAC+AGG + tig0025533:62272-62291 Msa1423430:intergenic 45.0%
AAATGAACAGGTGTGAAGGG+TGG + tig0025533:62352-62371 Msa1423430:intergenic 45.0%
! ATTTGGGACCCCTCTAATAG+TGG - tig0025533:62656-62675 Msa1423430:five_prime_UTR 45.0%
! TTTGGGACCCCTCTAATAGT+GGG - tig0025533:62657-62676 Msa1423430:five_prime_UTR 45.0%
GGGTGGCTCCTAATTTAGAT+TGG - tig0025533:62677-62696 Msa1423430:five_prime_UTR 45.0%
! AGAATGTTTGGAGCCTCCTT+AGG - tig0025533:62734-62753 Msa1423430:five_prime_UTR 45.0%
!! AAAAATTTAAAAAATCTAAT+GGG + tig0025533:56944-56963 Msa1423430:intergenic 5.0%
!! AAAAAATTTAAAAAATCTAA+TGG + tig0025533:56945-56964 Msa1423430:intergenic 5.0%
!!! TTTTTTTTTAAAATAAACTT+CGG - tig0025533:57818-57837 Msa1423430:intron 5.0%
!!! AGTATTTTTATTAAATTATT+AGG + tig0025533:58463-58482 Msa1423430:intergenic 5.0%
!!! TTTATTTTAAGTAAAAAATA+TGG + tig0025533:60882-60901 Msa1423430:intergenic 5.0%
AGAGGAAGTGGCTGTTAAGC+TGG - tig0025533:57354-57373 Msa1423430:three_prime_UTR 50.0%
ACAGTGCTATAACGGCGCTA+TGG - tig0025533:58904-58923 Msa1423430:intron 50.0%
GCTATGGCACTATTGCGTAG+CGG - tig0025533:58920-58939 Msa1423430:intron 50.0%
TGAGGGCGAGTACAATGTCA+TGG - tig0025533:59108-59127 Msa1423430:intron 50.0%
GTCATGGCCATTGACCTTCT+TGG - tig0025533:59124-59143 Msa1423430:intron 50.0%
! CTTCGAGACTTGGTCCAAGA+AGG + tig0025533:59141-59160 Msa1423430:intergenic 50.0%
TTTAGGCCGCAAGGCAAATC+AGG - tig0025533:59396-59415 Msa1423430:CDS 50.0%
! TTTTCCAGCCTTCCATGGCA+AGG - tig0025533:60591-60610 Msa1423430:CDS 50.0%
CCAGCTTTCATTCCTTGCCA+TGG + tig0025533:60606-60625 Msa1423430:intergenic 50.0%
CCATGGCAAGGAATGAAAGC+TGG - tig0025533:60603-60622 Msa1423430:CDS 50.0%
ACCGCAATGATCGGCAATAG+TGG + tig0025533:61038-61057 Msa1423430:intergenic 50.0%
CGGGACCTATTCATTCGAGA+AGG - tig0025533:61099-61118 Msa1423430:intron 50.0%
! GATGGTCCTGGGTTTAAGAC+TGG + tig0025533:61388-61407 Msa1423430:intergenic 50.0%
GTCTTAAACCCAGGACCATC+TGG - tig0025533:61388-61407 Msa1423430:intron 50.0%
CGTTCTAATCGCTCTCCAGA+TGG + tig0025533:61406-61425 Msa1423430:intergenic 50.0%
!!! CAGTGGGGGCATTTTCAAGA+AGG - tig0025533:61806-61825 Msa1423430:intron 50.0%
!! TGAAGCACTGCCATTACGAG+TGG + tig0025533:62052-62071 Msa1423430:intergenic 50.0%
AGTAGCAGACCAAGCTCTTC+TGG - tig0025533:62090-62109 Msa1423430:intron 50.0%
GTAGCAGACCAAGCTCTTCT+GGG - tig0025533:62091-62110 Msa1423430:intron 50.0%
TAGCAGACCAAGCTCTTCTG+GGG - tig0025533:62092-62111 Msa1423430:intron 50.0%
! GTCGTCTATCGACTACTCAG+AGG - tig0025533:62157-62176 Msa1423430:intron 50.0%
ACTACTCAGAGGGTTCAACC+TGG - tig0025533:62168-62187 Msa1423430:intron 50.0%
GGTACGGGTGAAGGATGATT+TGG + tig0025533:62202-62221 Msa1423430:intergenic 50.0%
GAGCTCCTGTCAATTGGTAC+CGG - tig0025533:62264-62283 Msa1423430:intron 50.0%
AGCTCCTGTCAATTGGTACC+GGG - tig0025533:62265-62284 Msa1423430:intron 50.0%
CCATGAATGGACCACAACAC+AGG + tig0025533:62393-62412 Msa1423430:intergenic 50.0%
CCTGTGTTGTGGTCCATTCA+TGG - tig0025533:62390-62409 Msa1423430:intron 50.0%
GGGTCCCAAATGCAATGGAA+GGG + tig0025533:62647-62666 Msa1423430:intergenic 50.0%
TAGAGGGGTCCCAAATGCAA+TGG + tig0025533:62652-62671 Msa1423430:intergenic 50.0%
AGGAGCCACCCACTATTAGA+GGG + tig0025533:62668-62687 Msa1423430:intergenic 50.0%
TAGGAGCCACCCACTATTAG+AGG + tig0025533:62669-62688 Msa1423430:intergenic 50.0%
GGATTTGGATCTGTGCGTGG+AGG + tig0025533:56888-56907 Msa1423430:intergenic 55.0%
CGGTACGCAATTGACAGCAC+TGG - tig0025533:58968-58987 Msa1423430:intron 55.0%
!! AATTGACAGCACTGGCAGCC+AGG - tig0025533:58976-58995 Msa1423430:intron 55.0%
!! TCTGATGGGTTTAGGCCGCA+AGG - tig0025533:59387-59406 Msa1423430:CDS 55.0%
!! CACCTTGGAGTTGGTGAGTG+AGG - tig0025533:60322-60341 Msa1423430:CDS 55.0%
TGCCTCACTCACCAACTCCA+AGG + tig0025533:60327-60346 Msa1423430:intergenic 55.0%
CATTCCTTGCCATGGAAGGC+TGG + tig0025533:60598-60617 Msa1423430:intergenic 55.0%
ATCGCTCTCCAGATGGTCCT+GGG + tig0025533:61399-61418 Msa1423430:intergenic 55.0%
AATCGCTCTCCAGATGGTCC+TGG + tig0025533:61400-61419 Msa1423430:intergenic 55.0%
GAGCGATTAGAACGGCCTTC+AGG - tig0025533:61412-61431 Msa1423430:intron 55.0%
AGAAGGAATGGGTCTGCGCA+AGG - tig0025533:61823-61842 Msa1423430:intron 55.0%
CTGCGAGCCCTATCAGAATC+AGG + tig0025533:62027-62046 Msa1423430:intergenic 55.0%
GCTCGCAGTTCCACTCGTAA+TGG - tig0025533:62039-62058 Msa1423430:intron 55.0%
CTAGGTTCCCCAGAAGAGCT+TGG + tig0025533:62102-62121 Msa1423430:intergenic 55.0%
CTGGGGAACCTAGTGAAAGC+CGG - tig0025533:62109-62128 Msa1423430:intron 55.0%
! CGACTAGACCGGCTTTCACT+AGG + tig0025533:62120-62139 Msa1423430:intergenic 55.0%
GGGGTCCCAAATGCAATGGA+AGG + tig0025533:62648-62667 Msa1423430:intergenic 55.0%
GGAGCCACCCACTATTAGAG+GGG + tig0025533:62667-62686 Msa1423430:intergenic 55.0%
GGATCTGTGCGTGGAGGTGA+AGG + tig0025533:56882-56901 Msa1423430:intergenic 60.0%
CTGCGCAAGGACTGCAGCAT+AGG - tig0025533:61836-61855 Msa1423430:intron 60.0%
TCATCCTTCACCCGTACCGC+AGG - tig0025533:62204-62223 Msa1423430:intron 60.0%
CATCCTTCACCCGTACCGCA+GGG - tig0025533:62205-62224 Msa1423430:intron 60.0%
! GGGACCCCTCTAATAGTGGG+TGG - tig0025533:62660-62679 Msa1423430:five_prime_UTR 60.0%
TGTCCCTGCGGTACGGGTGA+AGG + tig0025533:62211-62230 Msa1423430:intergenic 65.0%
ACCTCGTGTCCCTGCGGTAC+GGG + tig0025533:62217-62236 Msa1423430:intergenic 65.0%
CACCTCGTGTCCCTGCGGTA+CGG + tig0025533:62218-62237 Msa1423430:intergenic 65.0%
ACCCGTACCGCAGGGACACG+AGG - tig0025533:62213-62232 Msa1423430:intron 70.0%
CGTACCGCAGGGACACGAGG+TGG - tig0025533:62216-62235 Msa1423430:intron 70.0%
GCGACCACCTCGTGTCCCTG+CGG + tig0025533:62223-62242 Msa1423430:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0025533 gene 56791 62922 56791 ID=Msa1423430;Name=Msa1423430
tig0025533 mRNA 56791 62922 56791 ID=Msa1423430-mRNA-1;Parent=Msa1423430;Name=Msa1423430-mRNA-1;_AED=0.18;_eAED=0.18;_QI=378|1|1|1|1|1|14|623|458
tig0025533 exon 56791 57692 56791 ID=Msa1423430-mRNA-1:exon:3219;Parent=Msa1423430-mRNA-1
tig0025533 exon 57822 57940 57822 ID=Msa1423430-mRNA-1:exon:3218;Parent=Msa1423430-mRNA-1
tig0025533 exon 58280 58340 58280 ID=Msa1423430-mRNA-1:exon:3217;Parent=Msa1423430-mRNA-1
tig0025533 exon 58427 58500 58427 ID=Msa1423430-mRNA-1:exon:3216;Parent=Msa1423430-mRNA-1
tig0025533 exon 58593 58719 58593 ID=Msa1423430-mRNA-1:exon:3215;Parent=Msa1423430-mRNA-1
tig0025533 exon 59030 59114 59030 ID=Msa1423430-mRNA-1:exon:3214;Parent=Msa1423430-mRNA-1
tig0025533 exon 59195 59258 59195 ID=Msa1423430-mRNA-1:exon:3213;Parent=Msa1423430-mRNA-1
tig0025533 exon 59379 59440 59379 ID=Msa1423430-mRNA-1:exon:3212;Parent=Msa1423430-mRNA-1
tig0025533 exon 59871 59941 59871 ID=Msa1423430-mRNA-1:exon:3211;Parent=Msa1423430-mRNA-1
tig0025533 exon 60296 60391 60296 ID=Msa1423430-mRNA-1:exon:3210;Parent=Msa1423430-mRNA-1
tig0025533 exon 60488 60636 60488 ID=Msa1423430-mRNA-1:exon:3209;Parent=Msa1423430-mRNA-1
tig0025533 exon 60973 61042 60973 ID=Msa1423430-mRNA-1:exon:3208;Parent=Msa1423430-mRNA-1
tig0025533 exon 62338 62378 62338 ID=Msa1423430-mRNA-1:exon:3207;Parent=Msa1423430-mRNA-1
tig0025533 exon 62466 62922 62466 ID=Msa1423430-mRNA-1:exon:3206;Parent=Msa1423430-mRNA-1
tig0025533 five_prime_UTR 62545 62922 62545 ID=Msa1423430-mRNA-1:five_prime_utr;Parent=Msa1423430-mRNA-1
tig0025533 CDS 62466 62544 62466 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 62338 62378 62338 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 60973 61042 60973 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 60488 60636 60488 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 60296 60391 60296 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 59871 59941 59871 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 59379 59440 59379 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 59195 59258 59195 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 59030 59114 59030 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 58593 58719 58593 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 58427 58500 58427 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 58280 58340 58280 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 57822 57940 57822 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 CDS 57414 57692 57414 ID=Msa1423430-mRNA-1:cds;Parent=Msa1423430-mRNA-1
tig0025533 three_prime_UTR 56791 57413 56791 ID=Msa1423430-mRNA-1:three_prime_utr;Parent=Msa1423430-mRNA-1
Gene Sequence

>Msa1423430

ATGATGGATCTTGTTATTGGTGGAAAATTCAAACTTGGGAGGAAAATTGGAAGTGGGTCATTTGGAGAAATTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTCTACGAGTCCAAATTGTATATGCTTCTTCAAGGAGGAACTGGAATACCTCATATAAAGTGGTCTGGAGTTGAGGGCGAGTACAATGTCATGGCCATTGACCTTCTTGGACCAAGTCTCGAAGACTTATTTAACTATTGTAGTAGAAAATTCTCTCTTAAGACAGTGTTGATGCTTGCTGATCAACTAATAAACAGAGTAGAGTATATGCACTCTCGGGGTTTTCTGCATCGTGATATAAAGCCCGACAATTTTCTGATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAGCAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTCATGTACTTTTTGAGAGGAAGCCTTCCATGGCAAGGAATGAAAGCTGGCACTAAAAAGCAGAAATACGACAAGATAAGTGAAAAGAAAATGCTTACTCCAATAGAGGTATTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGACTCTTCCGGGACCTATTCATTCGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAACACGGCCAAGTGTGAAACCAGTCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAAATTCGAGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGGTCTGCGCAAGGACTGCAGCATAGGTCTCTAGATAATATGCCGTCTTCCAAAGATGTGCAACCTGATTCTGATAGGGCTCGCAGTTCCACTCGTAATGGCAGTGCTTCAAAAAGGCCTATGATATCAAGTAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGATCTCGAGCAGTAGTCGTCTATCGACTACTCAGAGGGTTCAACCTGGTCTTGAATCCAAATCATCCTTCACCCGTACCGCAGGGACACGAGGTGGTCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACCGGGAAAAGAAAATAA
Protein sequence

>Msa1423430

MMDLVIGGKFKLGRKIGSGSFGEIYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGEYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPSVKPVLNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSAQGLQHRSLDNMPSSKDVQPDSDRARSSTRNGSASKRPMISSSRPSSSGEPSESRSSRLISSSSRLSTTQRVQPGLESKSSFTRTAGTRGGRDDTLKSFELLSIGTGKRK*