Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424710 | sp|Q8L817|ATCA7_ARATH | 54.074 | 270 | 120 | 1 | 1 | 266 | 1 | 270 | 3.42e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424710 | A0A396I506 | 95.971 | 273 | 11 | 0 | 1 | 273 | 1 | 273 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0682510 | Msa1424710 | 0.942343 | 8.509047e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424710 | MtrunA17_Chr4g0028711 | 95.971 | 273 | 11 | 0 | 1 | 273 | 1 | 273 | 0.0 | 519 |
| Msa1424710 | MtrunA17_Chr4g0028721 | 95.909 | 220 | 9 | 0 | 30 | 249 | 4 | 223 | 1.32e-157 | 438 |
| Msa1424710 | MtrunA17_Chr4g0028741 | 74.349 | 269 | 66 | 3 | 1 | 267 | 1 | 268 | 1.33e-145 | 409 |
| Msa1424710 | MtrunA17_Chr4g0028731 | 65.432 | 243 | 28 | 3 | 30 | 272 | 4 | 190 | 4.55e-101 | 293 |
| Msa1424710 | MtrunA17_Chr1g0180371 | 50.800 | 250 | 118 | 2 | 21 | 266 | 24 | 272 | 1.68e-90 | 269 |
| Msa1424710 | MtrunA17_Chr1g0180331 | 46.241 | 266 | 139 | 2 | 13 | 274 | 15 | 280 | 1.61e-87 | 262 |
| Msa1424710 | MtrunA17_Chr7g0257091 | 46.124 | 258 | 132 | 4 | 10 | 264 | 5 | 258 | 1.73e-75 | 231 |
| Msa1424710 | MtrunA17_Chr7g0264911 | 48.325 | 209 | 101 | 5 | 64 | 266 | 1 | 208 | 5.96e-60 | 189 |
| Msa1424710 | MtrunA17_Chr1g0178601 | 36.154 | 260 | 152 | 3 | 13 | 266 | 11 | 262 | 4.99e-52 | 171 |
| Msa1424710 | MtrunA17_Chr1g0178591 | 36.471 | 255 | 155 | 3 | 18 | 266 | 9 | 262 | 6.06e-52 | 171 |
| Msa1424710 | MtrunA17_Chr1g0178541 | 33.146 | 178 | 109 | 3 | 95 | 266 | 3 | 176 | 2.89e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424710 | AT1G08080.1 | 54.074 | 270 | 120 | 1 | 1 | 266 | 1 | 270 | 3.48e-105 | 307 |
| Msa1424710 | AT2G28210.1 | 52.920 | 274 | 125 | 2 | 1 | 270 | 1 | 274 | 2.31e-103 | 302 |
| Msa1424710 | AT1G08065.1 | 51.311 | 267 | 126 | 3 | 3 | 266 | 2 | 267 | 3.70e-95 | 281 |
| Msa1424710 | AT4G20990.1 | 44.231 | 260 | 137 | 4 | 10 | 266 | 8 | 262 | 3.36e-76 | 233 |
| Msa1424710 | AT5G04180.1 | 43.969 | 257 | 140 | 2 | 13 | 268 | 6 | 259 | 9.76e-68 | 211 |
| Msa1424710 | AT4G21000.1 | 43.627 | 204 | 111 | 2 | 27 | 230 | 28 | 227 | 4.09e-62 | 197 |
| Msa1424710 | AT5G56330.1 | 43.852 | 244 | 96 | 2 | 29 | 270 | 133 | 337 | 1.69e-60 | 195 |
| Msa1424710 | AT5G56330.2 | 49.714 | 175 | 86 | 1 | 29 | 201 | 133 | 307 | 5.76e-55 | 180 |
| Msa1424710 | AT3G52720.3 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa1424710 | AT3G52720.4 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa1424710 | AT3G52720.1 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa1424710 | AT2G28210.2 | 50.694 | 144 | 67 | 2 | 1 | 140 | 1 | 144 | 9.48e-47 | 154 |
| Msa1424710 | AT3G52720.2 | 34.649 | 228 | 139 | 3 | 13 | 232 | 5 | 230 | 2.37e-42 | 145 |
Find 42 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGATTTGTTGAATAAA+AGG | 0.172589 | tig0025788:-45370 | Msa1424710:CDS |
| TCAAGCTATCTACAAATTAA+TGG | 0.229085 | tig0025788:-45129 | Msa1424710:CDS |
| TGCACTAAACGGTTGTTTAA+TGG | 0.256782 | tig0025788:+43910 | None:intergenic |
| GTGATCAAGGACCACAAAAT+TGG | 0.265747 | tig0025788:-45445 | Msa1424710:CDS |
| ACATTAAACCCGAATGGTTT+AGG | 0.297215 | tig0025788:-45418 | Msa1424710:CDS |
| CCCTCTGAACACACCATAGA+TGG | 0.349456 | tig0025788:-45069 | Msa1424710:CDS |
| TGATCAAGGACCACAAAATT+GGG | 0.363464 | tig0025788:-45444 | Msa1424710:CDS |
| ATAGTTGAGAAAGGATTTAG+AGG | 0.384121 | tig0025788:-44451 | Msa1424710:intron |
| CTTGCGATGAAAATATTACT+TGG | 0.386829 | tig0025788:-44317 | Msa1424710:CDS |
| GTTCAAATTGTGTCCAATCT+AGG | 0.410254 | tig0025788:-45347 | Msa1424710:CDS |
| TCAGGAGAAACGGCAGTGAT+TGG | 0.419054 | tig0025788:-44627 | Msa1424710:CDS |
| ACAGGAGAAGAAAGAGAAGT+TGG | 0.420336 | tig0025788:-44414 | Msa1424710:CDS |
| TATTGATTTGTTGAATAAAA+GGG | 0.422766 | tig0025788:-45369 | Msa1424710:CDS |
| ATCACTGCCGTTTCTCCTGA+TGG | 0.425732 | tig0025788:+44630 | None:intergenic |
| TTTATATATATAGTTGAGAA+AGG | 0.434264 | tig0025788:-44460 | Msa1424710:intron |
| GTTGGATCTAGAGTTACATT+TGG | 0.435599 | tig0025788:-44664 | Msa1424710:CDS |
| ACCAATGACAAGAAAAGATC+TGG | 0.465955 | tig0025788:+44582 | None:intergenic |
| TTGTTGAATTGAATCATCCT+AGG | 0.466504 | tig0025788:+44381 | None:intergenic |
| TCAGGTGAAATTTGTTTCAA+AGG | 0.466663 | tig0025788:-44144 | Msa1424710:intron |
| GAGGCAATTTCTACTAGTAC+AGG | 0.472807 | tig0025788:-44432 | Msa1424710:CDS |
| ATTGGAATATTGTACAAGAC+TGG | 0.473071 | tig0025788:-44609 | Msa1424710:CDS |
| GTTTGTTGAGTTGCACTAAA+CGG | 0.478039 | tig0025788:+43899 | None:intergenic |
| GCCATCTATGGTGTGTTCAG+AGG | 0.478240 | tig0025788:+45068 | None:intergenic |
| TATGATGAAGATAGTGATCA+AGG | 0.486328 | tig0025788:-45458 | Msa1424710:CDS |
| GATCTGAAGTGGTCCTAGAT+TGG | 0.490623 | tig0025788:+45334 | None:intergenic |
| ATGCATTATTATAGATACAT+TGG | 0.492032 | tig0025788:-44357 | Msa1424710:CDS |
| CCAACTTCTCGAGACAAAGC+TGG | 0.493620 | tig0025788:+46157 | None:intergenic |
| CCATCTATGGTGTGTTCAGA+GGG | 0.499462 | tig0025788:+45069 | None:intergenic |
| AAATAGGGGTCATGATATCA+TGG | 0.510800 | tig0025788:-45282 | Msa1424710:intron |
| CGGTTGTTTAATGGTTGCAA+TGG | 0.511747 | tig0025788:+43919 | None:intergenic |
| CCAGCTTTGTCTCGAGAAGT+TGG | 0.513380 | tig0025788:-46157 | Msa1424710:intron |
| AACACACCATAGATGGCAAA+AGG | 0.530334 | tig0025788:-45062 | Msa1424710:intron |
| AAGTTGGTGTAATTGATCCT+AGG | 0.536140 | tig0025788:-44398 | Msa1424710:CDS |
| TGAAACTCCATCAGGAGAAA+CGG | 0.536872 | tig0025788:-44637 | Msa1424710:CDS |
| TACTTGGACAATTGTTAGAG+AGG | 0.553555 | tig0025788:-44301 | Msa1424710:intron |
| TTGGTACATGAAACTCCATC+AGG | 0.557615 | tig0025788:-44645 | Msa1424710:CDS |
| CAACTTCTCGAGACAAAGCT+GGG | 0.569842 | tig0025788:+46158 | None:intergenic |
| GGGGAGACATTAAACCCGAA+TGG | 0.588939 | tig0025788:-45424 | Msa1424710:CDS |
| GGATTGTAGTTGATCTGAAG+TGG | 0.602641 | tig0025788:+45323 | None:intergenic |
| AAAGTAACTTACATCATGAA+CGG | 0.606564 | tig0025788:+44097 | None:intergenic |
| ATGTACTTAAACAGTTACAT+TGG | 0.630332 | tig0025788:-45098 | Msa1424710:CDS |
| GATCAAGGACCACAAAATTG+GGG | 0.666037 | tig0025788:-45443 | Msa1424710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTAATAAAAAGTAA+TGG | + | tig0025788:44028-44047 | None:intergenic | 10.0% |
| !!! | ACATATTTCATTTAATTTAA+TGG | - | tig0025788:44310-44329 | Msa1424710:CDS | 10.0% |
| !! | ATATTTATATGAATTATTAG+TGG | - | tig0025788:44460-44479 | Msa1424710:intron | 10.0% |
| !! | TTAATTCAAAGAAATTATTA+GGG | + | tig0025788:44923-44942 | None:intergenic | 10.0% |
| !! | ATTAATTCAAAGAAATTATT+AGG | + | tig0025788:44924-44943 | None:intergenic | 10.0% |
| !! | TATTATATCTATTGAATAAA+TGG | - | tig0025788:45173-45192 | Msa1424710:intron | 10.0% |
| !!! | AATAAAATAACTAGTTTAAT+TGG | - | tig0025788:45868-45887 | Msa1424710:intron | 10.0% |
| !! | ATTGATATTACAAATAATAT+AGG | + | tig0025788:46043-46062 | None:intergenic | 10.0% |
| !!! | AAAGTTTTAATAAAAAGTAA+TGG | + | tig0025788:44028-44047 | None:intergenic | 10.0% |
| !!! | ACATATTTCATTTAATTTAA+TGG | - | tig0025788:44310-44329 | Msa1424710:CDS | 10.0% |
| !! | ATATTTATATGAATTATTAG+TGG | - | tig0025788:44460-44479 | Msa1424710:intron | 10.0% |
| !! | TTAATTCAAAGAAATTATTA+GGG | + | tig0025788:44923-44942 | None:intergenic | 10.0% |
| !! | ATTAATTCAAAGAAATTATT+AGG | + | tig0025788:44924-44943 | None:intergenic | 10.0% |
| !! | TATTATATCTATTGAATAAA+TGG | - | tig0025788:45173-45192 | Msa1424710:intron | 10.0% |
| !!! | AATAAAATAACTAGTTTAAT+TGG | - | tig0025788:45868-45887 | Msa1424710:intron | 10.0% |
| !! | ATTGATATTACAAATAATAT+AGG | + | tig0025788:46043-46062 | None:intergenic | 10.0% |
| !!! | TATTTCATTTAATTTAATGG+TGG | - | tig0025788:44313-44332 | Msa1424710:CDS | 15.0% |
| !!! | ATTTCATTTAATTTAATGGT+GGG | - | tig0025788:44314-44333 | Msa1424710:CDS | 15.0% |
| !!! | TATTGATTTGTTGAATAAAA+GGG | - | tig0025788:44736-44755 | Msa1424710:intron | 15.0% |
| !! | TAATTCAAAGAAATTATTAG+GGG | + | tig0025788:44922-44941 | None:intergenic | 15.0% |
| !! | TTAAACCTAATATTATCTTA+AGG | + | tig0025788:45226-45245 | None:intergenic | 15.0% |
| !! | AGATAATATTAGGTTTAATT+TGG | - | tig0025788:45228-45247 | Msa1424710:intron | 15.0% |
| !! | TTTATATATATAGTTGAGAA+AGG | - | tig0025788:45645-45664 | Msa1424710:intron | 15.0% |
| !!! | GTTTAAAACATAAGATATTA+TGG | + | tig0025788:46126-46145 | None:intergenic | 15.0% |
| !!! | TATTTCATTTAATTTAATGG+TGG | - | tig0025788:44313-44332 | Msa1424710:CDS | 15.0% |
| !!! | ATTTCATTTAATTTAATGGT+GGG | - | tig0025788:44314-44333 | Msa1424710:CDS | 15.0% |
| !!! | TATTGATTTGTTGAATAAAA+GGG | - | tig0025788:44736-44755 | Msa1424710:intron | 15.0% |
| !! | TAATTCAAAGAAATTATTAG+GGG | + | tig0025788:44922-44941 | None:intergenic | 15.0% |
| !! | TTAAACCTAATATTATCTTA+AGG | + | tig0025788:45226-45245 | None:intergenic | 15.0% |
| !! | AGATAATATTAGGTTTAATT+TGG | - | tig0025788:45228-45247 | Msa1424710:intron | 15.0% |
| !! | TTTATATATATAGTTGAGAA+AGG | - | tig0025788:45645-45664 | Msa1424710:intron | 15.0% |
| !!! | GTTTAAAACATAAGATATTA+TGG | + | tig0025788:46126-46145 | None:intergenic | 15.0% |
| !! | TGATTAAAATTAAGAGATGA+TGG | + | tig0025788:44051-44070 | None:intergenic | 20.0% |
| !! | AAACAAAATCATGTTTACTA+TGG | + | tig0025788:44224-44243 | None:intergenic | 20.0% |
| !! | TTATTTGTACACCATAAAAT+TGG | - | tig0025788:44388-44407 | Msa1424710:CDS | 20.0% |
| !! | TGTTAACACACAAAAATAAA+AGG | - | tig0025788:44425-44444 | Msa1424710:CDS | 20.0% |
| !! | TATTAGTGGTAAAATATCAT+AGG | - | tig0025788:44474-44493 | Msa1424710:intron | 20.0% |
| !! | AAATATCATAGGATTATTAG+TGG | - | tig0025788:44485-44504 | Msa1424710:intron | 20.0% |
| !!! | CTTTTATTCAACAAATCAAT+AGG | + | tig0025788:44737-44756 | None:intergenic | 20.0% |
| !!! | CTATTGATTTGTTGAATAAA+AGG | - | tig0025788:44735-44754 | Msa1424710:intron | 20.0% |
| !! | TAATGCAACTCTTAAAAATA+GGG | - | tig0025788:44808-44827 | Msa1424710:intron | 20.0% |
| !!! | ATTAGGTTTAATTTGGATAA+AGG | - | tig0025788:45235-45254 | Msa1424710:intron | 20.0% |
| !! | TATTTATTTGATCACTCATA+CGG | - | tig0025788:45370-45389 | Msa1424710:CDS | 20.0% |
| !! | ATGCATTATTATAGATACAT+TGG | - | tig0025788:45748-45767 | Msa1424710:intron | 20.0% |
| !!! | AGTGATTAATTTAATTTGCT+AGG | - | tig0025788:45829-45848 | Msa1424710:intron | 20.0% |
| !! | TTTAATTGGTCACATTTATT+AGG | - | tig0025788:45882-45901 | Msa1424710:intron | 20.0% |
| !! | TATAATCTATTCAAATGATC+AGG | - | tig0025788:45943-45962 | Msa1424710:intron | 20.0% |
| !! | ATATTTATCTCAACCTAATT+AGG | - | tig0025788:46061-46080 | Msa1424710:intron | 20.0% |
| !! | ATCAATAAAATCTTTATGCA+AGG | - | tig0025788:46094-46113 | Msa1424710:intron | 20.0% |
| !! | TGATTAAAATTAAGAGATGA+TGG | + | tig0025788:44051-44070 | None:intergenic | 20.0% |
| !! | AAACAAAATCATGTTTACTA+TGG | + | tig0025788:44224-44243 | None:intergenic | 20.0% |
| !! | TTATTTGTACACCATAAAAT+TGG | - | tig0025788:44388-44407 | Msa1424710:CDS | 20.0% |
| !! | TGTTAACACACAAAAATAAA+AGG | - | tig0025788:44425-44444 | Msa1424710:CDS | 20.0% |
| !! | TATTAGTGGTAAAATATCAT+AGG | - | tig0025788:44474-44493 | Msa1424710:intron | 20.0% |
| !! | AAATATCATAGGATTATTAG+TGG | - | tig0025788:44485-44504 | Msa1424710:intron | 20.0% |
| !!! | CTTTTATTCAACAAATCAAT+AGG | + | tig0025788:44737-44756 | None:intergenic | 20.0% |
| !!! | CTATTGATTTGTTGAATAAA+AGG | - | tig0025788:44735-44754 | Msa1424710:intron | 20.0% |
| !! | TAATGCAACTCTTAAAAATA+GGG | - | tig0025788:44808-44827 | Msa1424710:intron | 20.0% |
| !!! | ATTAGGTTTAATTTGGATAA+AGG | - | tig0025788:45235-45254 | Msa1424710:intron | 20.0% |
| !! | TATTTATTTGATCACTCATA+CGG | - | tig0025788:45370-45389 | Msa1424710:CDS | 20.0% |
| !! | ATGCATTATTATAGATACAT+TGG | - | tig0025788:45748-45767 | Msa1424710:intron | 20.0% |
| !!! | AGTGATTAATTTAATTTGCT+AGG | - | tig0025788:45829-45848 | Msa1424710:intron | 20.0% |
| !! | TTTAATTGGTCACATTTATT+AGG | - | tig0025788:45882-45901 | Msa1424710:intron | 20.0% |
| !! | TATAATCTATTCAAATGATC+AGG | - | tig0025788:45943-45962 | Msa1424710:intron | 20.0% |
| !! | ATATTTATCTCAACCTAATT+AGG | - | tig0025788:46061-46080 | Msa1424710:intron | 20.0% |
| !! | ATCAATAAAATCTTTATGCA+AGG | - | tig0025788:46094-46113 | Msa1424710:intron | 20.0% |
| ! | TCAGGAAATTAAAACTACAT+TGG | + | tig0025788:44099-44118 | None:intergenic | 25.0% |
| !! | TTGTTTATTGGCCAATTTTA+TGG | + | tig0025788:44402-44421 | None:intergenic | 25.0% |
| !!! | GTGTTAACACTTTTGTTTAT+TGG | + | tig0025788:44414-44433 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTAATTGCAG+AGG | - | tig0025788:44607-44626 | Msa1424710:CDS | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | + | tig0025788:44806-44825 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGAGTTGCATTAG+AGG | + | tig0025788:44807-44826 | None:intergenic | 25.0% |
| ! | CTAATGCAACTCTTAAAAAT+AGG | - | tig0025788:44807-44826 | Msa1424710:intron | 25.0% |
| ! | AATGCAACTCTTAAAAATAG+GGG | - | tig0025788:44809-44828 | Msa1424710:intron | 25.0% |
| !!! | TTAATTTGCTTATGAATAGC+TGG | - | tig0025788:44939-44958 | Msa1424710:intron | 25.0% |
| ! | TCAAGCTATCTACAAATTAA+TGG | - | tig0025788:44976-44995 | Msa1424710:intron | 25.0% |
| ! | ATGTACTTAAACAGTTACAT+TGG | - | tig0025788:45007-45026 | Msa1424710:intron | 25.0% |
| !! | AGGTACATACTTTTATAACA+TGG | - | tig0025788:45063-45082 | Msa1424710:CDS | 25.0% |
| !! | ATAGATAGAGTATCATGATT+TGG | + | tig0025788:45122-45141 | None:intergenic | 25.0% |
| ! | TTACACCGATATTATTAAGA+TGG | + | tig0025788:45264-45283 | None:intergenic | 25.0% |
| ! | ATTTATTTGATCACTCATAC+GGG | - | tig0025788:45371-45390 | Msa1424710:CDS | 25.0% |
| !! | CTAATAATTAATTGAGTTGC+AGG | - | tig0025788:45419-45438 | Msa1424710:CDS | 25.0% |
| ! | AAAGTAACTTACATCATGAA+CGG | + | tig0025788:46011-46030 | None:intergenic | 25.0% |
| !!! | GATATTCTAAAGTCCTAATT+AGG | + | tig0025788:46077-46096 | None:intergenic | 25.0% |
| ! | TCAGGAAATTAAAACTACAT+TGG | + | tig0025788:44099-44118 | None:intergenic | 25.0% |
| !! | TTGTTTATTGGCCAATTTTA+TGG | + | tig0025788:44402-44421 | None:intergenic | 25.0% |
| !!! | GTGTTAACACTTTTGTTTAT+TGG | + | tig0025788:44414-44433 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTAATTGCAG+AGG | - | tig0025788:44607-44626 | Msa1424710:CDS | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | + | tig0025788:44806-44825 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGAGTTGCATTAG+AGG | + | tig0025788:44807-44826 | None:intergenic | 25.0% |
| ! | CTAATGCAACTCTTAAAAAT+AGG | - | tig0025788:44807-44826 | Msa1424710:intron | 25.0% |
| ! | AATGCAACTCTTAAAAATAG+GGG | - | tig0025788:44809-44828 | Msa1424710:intron | 25.0% |
| !!! | TTAATTTGCTTATGAATAGC+TGG | - | tig0025788:44939-44958 | Msa1424710:intron | 25.0% |
| ! | TCAAGCTATCTACAAATTAA+TGG | - | tig0025788:44976-44995 | Msa1424710:intron | 25.0% |
| ! | ATGTACTTAAACAGTTACAT+TGG | - | tig0025788:45007-45026 | Msa1424710:intron | 25.0% |
| !! | AGGTACATACTTTTATAACA+TGG | - | tig0025788:45063-45082 | Msa1424710:CDS | 25.0% |
| !! | ATAGATAGAGTATCATGATT+TGG | + | tig0025788:45122-45141 | None:intergenic | 25.0% |
| ! | TTACACCGATATTATTAAGA+TGG | + | tig0025788:45264-45283 | None:intergenic | 25.0% |
| ! | ATTTATTTGATCACTCATAC+GGG | - | tig0025788:45371-45390 | Msa1424710:CDS | 25.0% |
| !! | CTAATAATTAATTGAGTTGC+AGG | - | tig0025788:45419-45438 | Msa1424710:CDS | 25.0% |
| ! | AAAGTAACTTACATCATGAA+CGG | + | tig0025788:46011-46030 | None:intergenic | 25.0% |
| !!! | GATATTCTAAAGTCCTAATT+AGG | + | tig0025788:46077-46096 | None:intergenic | 25.0% |
| !! | GCTTCAATTGCTTTGATTTT+TGG | - | tig0025788:43891-43910 | Msa1424710:CDS | 30.0% |
| ! | CAAAGCATCTAAGCAAAAAA+AGG | + | tig0025788:43985-44004 | None:intergenic | 30.0% |
| TTCCTGAACTTAATCAACTT+CGG | - | tig0025788:44112-44131 | Msa1424710:CDS | 30.0% | |
| ATATTTAGTGTATGTGAGTC+TGG | + | tig0025788:44560-44579 | None:intergenic | 30.0% | |
| TATGATGAAGATAGTGATCA+AGG | - | tig0025788:44647-44666 | Msa1424710:CDS | 30.0% | |
| ! | ATTTTTGCACCTAAACCATT+CGG | + | tig0025788:44699-44718 | None:intergenic | 30.0% |
| CACAGCCTTAAGATAATATT+AGG | - | tig0025788:45218-45237 | Msa1424710:intron | 30.0% | |
| GGTGTCCATCTTAATAATAT+CGG | - | tig0025788:45256-45275 | Msa1424710:intron | 30.0% | |
| ATAACCCTAATTAACCATTG+AGG | - | tig0025788:45297-45316 | Msa1424710:CDS | 30.0% | |
| ATCTCCTCAATGGTTAATTA+GGG | + | tig0025788:45304-45323 | None:intergenic | 30.0% | |
| AATCTCCTCAATGGTTAATT+AGG | + | tig0025788:45305-45324 | None:intergenic | 30.0% | |
| ! | TAATTAATTGAGTTGCAGGT+TGG | - | tig0025788:45423-45442 | Msa1424710:CDS | 30.0% |
| ATTGGAATATTGTACAAGAC+TGG | - | tig0025788:45496-45515 | Msa1424710:intron | 30.0% | |
| ATAGTTGAGAAAGGATTTAG+AGG | - | tig0025788:45654-45673 | Msa1424710:intron | 30.0% | |
| TTGTTGAATTGAATCATCCT+AGG | + | tig0025788:45727-45746 | None:intergenic | 30.0% | |
| ! | GTAATATTTTCATCGCAAGA+AGG | + | tig0025788:45787-45806 | None:intergenic | 30.0% |
| CTTGCGATGAAAATATTACT+TGG | - | tig0025788:45788-45807 | Msa1424710:intron | 30.0% | |
| ! | TCAGGTGAAATTTGTTTCAA+AGG | - | tig0025788:45961-45980 | Msa1424710:intron | 30.0% |
| !! | GCTTCAATTGCTTTGATTTT+TGG | - | tig0025788:43891-43910 | Msa1424710:CDS | 30.0% |
| ! | CAAAGCATCTAAGCAAAAAA+AGG | + | tig0025788:43985-44004 | None:intergenic | 30.0% |
| TTCCTGAACTTAATCAACTT+CGG | - | tig0025788:44112-44131 | Msa1424710:CDS | 30.0% | |
| ATATTTAGTGTATGTGAGTC+TGG | + | tig0025788:44560-44579 | None:intergenic | 30.0% | |
| TATGATGAAGATAGTGATCA+AGG | - | tig0025788:44647-44666 | Msa1424710:CDS | 30.0% | |
| ! | ATTTTTGCACCTAAACCATT+CGG | + | tig0025788:44699-44718 | None:intergenic | 30.0% |
| CACAGCCTTAAGATAATATT+AGG | - | tig0025788:45218-45237 | Msa1424710:intron | 30.0% | |
| GGTGTCCATCTTAATAATAT+CGG | - | tig0025788:45256-45275 | Msa1424710:intron | 30.0% | |
| ATAACCCTAATTAACCATTG+AGG | - | tig0025788:45297-45316 | Msa1424710:CDS | 30.0% | |
| ATCTCCTCAATGGTTAATTA+GGG | + | tig0025788:45304-45323 | None:intergenic | 30.0% | |
| AATCTCCTCAATGGTTAATT+AGG | + | tig0025788:45305-45324 | None:intergenic | 30.0% | |
| ! | TAATTAATTGAGTTGCAGGT+TGG | - | tig0025788:45423-45442 | Msa1424710:CDS | 30.0% |
| ATTGGAATATTGTACAAGAC+TGG | - | tig0025788:45496-45515 | Msa1424710:intron | 30.0% | |
| ATAGTTGAGAAAGGATTTAG+AGG | - | tig0025788:45654-45673 | Msa1424710:intron | 30.0% | |
| TTGTTGAATTGAATCATCCT+AGG | + | tig0025788:45727-45746 | None:intergenic | 30.0% | |
| ! | GTAATATTTTCATCGCAAGA+AGG | + | tig0025788:45787-45806 | None:intergenic | 30.0% |
| CTTGCGATGAAAATATTACT+TGG | - | tig0025788:45788-45807 | Msa1424710:intron | 30.0% | |
| ! | TCAGGTGAAATTTGTTTCAA+AGG | - | tig0025788:45961-45980 | Msa1424710:intron | 30.0% |
| TCATGTTTACTATGGCGATT+AGG | + | tig0025788:44216-44235 | None:intergenic | 35.0% | |
| ATGATATTGCACCATGAACA+AGG | - | tig0025788:44260-44279 | Msa1424710:intron | 35.0% | |
| TGATATTGCACCATGAACAA+GGG | - | tig0025788:44261-44280 | Msa1424710:intron | 35.0% | |
| GATAAAAAGACCCTTGTTCA+TGG | + | tig0025788:44274-44293 | None:intergenic | 35.0% | |
| TGATCAAGGACCACAAAATT+GGG | - | tig0025788:44661-44680 | Msa1424710:CDS | 35.0% | |
| ! | TTAATGTCTCCCCAATTTTG+TGG | + | tig0025788:44674-44693 | None:intergenic | 35.0% |
| ACATTAAACCCGAATGGTTT+AGG | - | tig0025788:44687-44706 | Msa1424710:intron | 35.0% | |
| ! | TTTTTGCACCTAAACCATTC+GGG | + | tig0025788:44698-44717 | None:intergenic | 35.0% |
| GAATGGTTTAGGTGCAAAAA+TGG | - | tig0025788:44698-44717 | Msa1424710:intron | 35.0% | |
| GTTCAAATTGTGTCCAATCT+AGG | - | tig0025788:44758-44777 | Msa1424710:intron | 35.0% | |
| AAATAGGGGTCATGATATCA+TGG | - | tig0025788:44823-44842 | Msa1424710:intron | 35.0% | |
| ! | TATGTACCTTTTGCCATCTA+TGG | + | tig0025788:45052-45071 | None:intergenic | 35.0% |
| TAGTGGTTCAAGTAGAACTT+TGG | + | tig0025788:45098-45117 | None:intergenic | 35.0% | |
| ! | GAGTATCATGATTTGGATAG+TGG | + | tig0025788:45115-45134 | None:intergenic | 35.0% |
| TAATATCGGTGTAAGCCTTA+TGG | - | tig0025788:45270-45289 | Msa1424710:intron | 35.0% | |
| ATTAGGGTTATCTGTCCATA+AGG | + | tig0025788:45288-45307 | None:intergenic | 35.0% | |
| GCAAGATAAAATCTCCTCAA+TGG | + | tig0025788:45314-45333 | None:intergenic | 35.0% | |
| ! | GTTGGATCTAGAGTTACATT+TGG | - | tig0025788:45441-45460 | Msa1424710:CDS | 35.0% |
| ! | ACCAGATCTTTTCTTGTCAT+TGG | - | tig0025788:45522-45541 | Msa1424710:intron | 35.0% |
| ACCAATGACAAGAAAAGATC+TGG | + | tig0025788:45526-45545 | None:intergenic | 35.0% | |
| CAAAAACATGTAGATCACAC+TGG | + | tig0025788:45573-45592 | None:intergenic | 35.0% | |
| !! | AAGTTGGTGTAATTGATCCT+AGG | - | tig0025788:45707-45726 | Msa1424710:intron | 35.0% |
| TACTTGGACAATTGTTAGAG+AGG | - | tig0025788:45804-45823 | Msa1424710:intron | 35.0% | |
| TGCACTAAACGGTTGTTTAA+TGG | + | tig0025788:46198-46217 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAGTTGCACTAAA+CGG | + | tig0025788:46209-46228 | None:intergenic | 35.0% |
| TCATGTTTACTATGGCGATT+AGG | + | tig0025788:44216-44235 | None:intergenic | 35.0% | |
| ATGATATTGCACCATGAACA+AGG | - | tig0025788:44260-44279 | Msa1424710:intron | 35.0% | |
| TGATATTGCACCATGAACAA+GGG | - | tig0025788:44261-44280 | Msa1424710:intron | 35.0% | |
| GATAAAAAGACCCTTGTTCA+TGG | + | tig0025788:44274-44293 | None:intergenic | 35.0% | |
| TGATCAAGGACCACAAAATT+GGG | - | tig0025788:44661-44680 | Msa1424710:CDS | 35.0% | |
| ! | TTAATGTCTCCCCAATTTTG+TGG | + | tig0025788:44674-44693 | None:intergenic | 35.0% |
| ACATTAAACCCGAATGGTTT+AGG | - | tig0025788:44687-44706 | Msa1424710:intron | 35.0% | |
| ! | TTTTTGCACCTAAACCATTC+GGG | + | tig0025788:44698-44717 | None:intergenic | 35.0% |
| GAATGGTTTAGGTGCAAAAA+TGG | - | tig0025788:44698-44717 | Msa1424710:intron | 35.0% | |
| GTTCAAATTGTGTCCAATCT+AGG | - | tig0025788:44758-44777 | Msa1424710:intron | 35.0% | |
| AAATAGGGGTCATGATATCA+TGG | - | tig0025788:44823-44842 | Msa1424710:intron | 35.0% | |
| ! | TATGTACCTTTTGCCATCTA+TGG | + | tig0025788:45052-45071 | None:intergenic | 35.0% |
| TAGTGGTTCAAGTAGAACTT+TGG | + | tig0025788:45098-45117 | None:intergenic | 35.0% | |
| ! | GAGTATCATGATTTGGATAG+TGG | + | tig0025788:45115-45134 | None:intergenic | 35.0% |
| TAATATCGGTGTAAGCCTTA+TGG | - | tig0025788:45270-45289 | Msa1424710:intron | 35.0% | |
| ATTAGGGTTATCTGTCCATA+AGG | + | tig0025788:45288-45307 | None:intergenic | 35.0% | |
| GCAAGATAAAATCTCCTCAA+TGG | + | tig0025788:45314-45333 | None:intergenic | 35.0% | |
| ! | GTTGGATCTAGAGTTACATT+TGG | - | tig0025788:45441-45460 | Msa1424710:CDS | 35.0% |
| ! | ACCAGATCTTTTCTTGTCAT+TGG | - | tig0025788:45522-45541 | Msa1424710:intron | 35.0% |
| ACCAATGACAAGAAAAGATC+TGG | + | tig0025788:45526-45545 | None:intergenic | 35.0% | |
| CAAAAACATGTAGATCACAC+TGG | + | tig0025788:45573-45592 | None:intergenic | 35.0% | |
| !! | AAGTTGGTGTAATTGATCCT+AGG | - | tig0025788:45707-45726 | Msa1424710:intron | 35.0% |
| TACTTGGACAATTGTTAGAG+AGG | - | tig0025788:45804-45823 | Msa1424710:intron | 35.0% | |
| TGCACTAAACGGTTGTTTAA+TGG | + | tig0025788:46198-46217 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAGTTGCACTAAA+CGG | + | tig0025788:46209-46228 | None:intergenic | 35.0% |
| ! | AGCCGAAGTTGATTAAGTTC+AGG | + | tig0025788:44117-44136 | None:intergenic | 40.0% |
| ! | ACTAACTTGTGCATGATGCA+AGG | - | tig0025788:44359-44378 | Msa1424710:CDS | 40.0% |
| TGGCTACTTGACTCTTTAGT+GGG | + | tig0025788:44540-44559 | None:intergenic | 40.0% | |
| GTGATCAAGGACCACAAAAT+TGG | - | tig0025788:44660-44679 | Msa1424710:CDS | 40.0% | |
| GATCAAGGACCACAAAATTG+GGG | - | tig0025788:44662-44681 | Msa1424710:CDS | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | + | tig0025788:44785-44804 | None:intergenic | 40.0% | |
| AACACACCATAGATGGCAAA+AGG | - | tig0025788:45043-45062 | Msa1424710:intron | 40.0% | |
| TTGGTACATGAAACTCCATC+AGG | - | tig0025788:45460-45479 | Msa1424710:CDS | 40.0% | |
| TGAAACTCCATCAGGAGAAA+CGG | - | tig0025788:45468-45487 | Msa1424710:CDS | 40.0% | |
| GAGGCAATTTCTACTAGTAC+AGG | - | tig0025788:45673-45692 | Msa1424710:intron | 40.0% | |
| ACAGGAGAAGAAAGAGAAGT+TGG | - | tig0025788:45691-45710 | Msa1424710:intron | 40.0% | |
| AACATTGACCTCAACTTTGC+AGG | - | tig0025788:46143-46162 | Msa1424710:intron | 40.0% | |
| CGGTTGTTTAATGGTTGCAA+TGG | + | tig0025788:46189-46208 | None:intergenic | 40.0% | |
| ! | AGCCGAAGTTGATTAAGTTC+AGG | + | tig0025788:44117-44136 | None:intergenic | 40.0% |
| ! | ACTAACTTGTGCATGATGCA+AGG | - | tig0025788:44359-44378 | Msa1424710:CDS | 40.0% |
| TGGCTACTTGACTCTTTAGT+GGG | + | tig0025788:44540-44559 | None:intergenic | 40.0% | |
| GTGATCAAGGACCACAAAAT+TGG | - | tig0025788:44660-44679 | Msa1424710:CDS | 40.0% | |
| GATCAAGGACCACAAAATTG+GGG | - | tig0025788:44662-44681 | Msa1424710:CDS | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | + | tig0025788:44785-44804 | None:intergenic | 40.0% | |
| AACACACCATAGATGGCAAA+AGG | - | tig0025788:45043-45062 | Msa1424710:intron | 40.0% | |
| TTGGTACATGAAACTCCATC+AGG | - | tig0025788:45460-45479 | Msa1424710:CDS | 40.0% | |
| TGAAACTCCATCAGGAGAAA+CGG | - | tig0025788:45468-45487 | Msa1424710:CDS | 40.0% | |
| GAGGCAATTTCTACTAGTAC+AGG | - | tig0025788:45673-45692 | Msa1424710:intron | 40.0% | |
| ACAGGAGAAGAAAGAGAAGT+TGG | - | tig0025788:45691-45710 | Msa1424710:intron | 40.0% | |
| AACATTGACCTCAACTTTGC+AGG | - | tig0025788:46143-46162 | Msa1424710:intron | 40.0% | |
| CGGTTGTTTAATGGTTGCAA+TGG | + | tig0025788:46189-46208 | None:intergenic | 40.0% | |
| CAACTTCTCGAGACAAAGCT+GGG | + | tig0025788:43950-43969 | None:intergenic | 45.0% | |
| GGCTACTTGACTCTTTAGTG+GGG | + | tig0025788:44539-44558 | None:intergenic | 45.0% | |
| CTGGCTACTTGACTCTTTAG+TGG | + | tig0025788:44541-44560 | None:intergenic | 45.0% | |
| ! | GATCTGAAGTGGTCCTAGAT+TGG | + | tig0025788:44774-44793 | None:intergenic | 45.0% |
| CCATCTATGGTGTGTTCAGA+GGG | + | tig0025788:45039-45058 | None:intergenic | 45.0% | |
| ATCTGAGTCCTGCAAAGTTG+AGG | + | tig0025788:46154-46173 | None:intergenic | 45.0% | |
| CAACTTCTCGAGACAAAGCT+GGG | + | tig0025788:43950-43969 | None:intergenic | 45.0% | |
| GGCTACTTGACTCTTTAGTG+GGG | + | tig0025788:44539-44558 | None:intergenic | 45.0% | |
| CTGGCTACTTGACTCTTTAG+TGG | + | tig0025788:44541-44560 | None:intergenic | 45.0% | |
| ! | GATCTGAAGTGGTCCTAGAT+TGG | + | tig0025788:44774-44793 | None:intergenic | 45.0% |
| CCATCTATGGTGTGTTCAGA+GGG | + | tig0025788:45039-45058 | None:intergenic | 45.0% | |
| ATCTGAGTCCTGCAAAGTTG+AGG | + | tig0025788:46154-46173 | None:intergenic | 45.0% | |
| !! | ATATACTAAATTAATTAATT+AGG | + | tig0025788:45606-45625 | None:intergenic | 5.0% |
| !!! | ATTTTATTTAATAAATTAAG+AGG | + | tig0025788:45856-45875 | None:intergenic | 5.0% |
| !! | ATATACTAAATTAATTAATT+AGG | + | tig0025788:45606-45625 | None:intergenic | 5.0% |
| !!! | ATTTTATTTAATAAATTAAG+AGG | + | tig0025788:45856-45875 | None:intergenic | 5.0% |
| CCAACTTCTCGAGACAAAGC+TGG | + | tig0025788:43951-43970 | None:intergenic | 50.0% | |
| ! | CCAGCTTTGTCTCGAGAAGT+TGG | - | tig0025788:43948-43967 | Msa1424710:intron | 50.0% |
| GGGGAGACATTAAACCCGAA+TGG | - | tig0025788:44681-44700 | Msa1424710:intron | 50.0% | |
| CCCTCTGAACACACCATAGA+TGG | - | tig0025788:45036-45055 | Msa1424710:intron | 50.0% | |
| GCCATCTATGGTGTGTTCAG+AGG | + | tig0025788:45040-45059 | None:intergenic | 50.0% | |
| ! | ATCACTGCCGTTTCTCCTGA+TGG | + | tig0025788:45478-45497 | None:intergenic | 50.0% |
| TCAGGAGAAACGGCAGTGAT+TGG | - | tig0025788:45478-45497 | Msa1424710:CDS | 50.0% | |
| CCAACTTCTCGAGACAAAGC+TGG | + | tig0025788:43951-43970 | None:intergenic | 50.0% | |
| ! | CCAGCTTTGTCTCGAGAAGT+TGG | - | tig0025788:43948-43967 | Msa1424710:intron | 50.0% |
| GGGGAGACATTAAACCCGAA+TGG | - | tig0025788:44681-44700 | Msa1424710:intron | 50.0% | |
| CCCTCTGAACACACCATAGA+TGG | - | tig0025788:45036-45055 | Msa1424710:intron | 50.0% | |
| GCCATCTATGGTGTGTTCAG+AGG | + | tig0025788:45040-45059 | None:intergenic | 50.0% | |
| ! | ATCACTGCCGTTTCTCCTGA+TGG | + | tig0025788:45478-45497 | None:intergenic | 50.0% |
| TCAGGAGAAACGGCAGTGAT+TGG | - | tig0025788:45478-45497 | Msa1424710:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025788 | gene | 43879 | 46248 | 43879 | ID=Msa1424710;Name=Msa1424710 |
| tig0025788 | mRNA | 43879 | 46248 | 43879 | ID=Msa1424710-mRNA-1;Parent=Msa1424710;Name=Msa1424710-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.85|1|1|7|0|274 |
| tig0025788 | exon | 46158 | 46248 | 46158 | ID=Msa1424710-mRNA-1:exon:3924;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 45283 | 45500 | 45283 | ID=Msa1424710-mRNA-1:exon:3923;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 45063 | 45169 | 45063 | ID=Msa1424710-mRNA-1:exon:3922;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 44584 | 44686 | 44584 | ID=Msa1424710-mRNA-1:exon:3921;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 44302 | 44469 | 44302 | ID=Msa1424710-mRNA-1:exon:3920;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 44109 | 44162 | 44109 | ID=Msa1424710-mRNA-1:exon:3919;Parent=Msa1424710-mRNA-1 |
| tig0025788 | exon | 43879 | 43962 | 43879 | ID=Msa1424710-mRNA-1:exon:3918;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 46158 | 46248 | 46158 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 45283 | 45500 | 45283 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 45063 | 45169 | 45063 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 44584 | 44686 | 44584 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 44302 | 44469 | 44302 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 44109 | 44162 | 44109 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| tig0025788 | CDS | 43879 | 43962 | 43879 | ID=Msa1424710-mRNA-1:cds;Parent=Msa1424710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
