Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682510 | XP_039688945.1 | 95.971 | 273 | 11 | 0 | 1 | 273 | 1 | 273 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682510 | sp|Q8L817|ATCA7_ARATH | 54.074 | 270 | 120 | 1 | 1 | 266 | 1 | 270 | 3.42e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682510 | A0A396I506 | 95.971 | 273 | 11 | 0 | 1 | 273 | 1 | 273 | 0.0 | 519 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0682510 | Msa0935910 | 0.810020 | 1.418591e-50 | -8.615850e-47 |
| Msa0682510 | Msa1023050 | 0.807361 | 5.248199e-50 | -8.615850e-47 |
| Msa0682510 | Msa1047800 | 0.812412 | 4.295393e-51 | -8.615850e-47 |
| Msa0682510 | Msa1419960 | 0.804050 | 2.601819e-49 | -8.615850e-47 |
| Msa0682510 | Msa1424710 | 0.942343 | 8.509047e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682510 | MtrunA17_Chr4g0028711 | 95.971 | 273 | 11 | 0 | 1 | 273 | 1 | 273 | 0.0 | 519 |
| Msa0682510 | MtrunA17_Chr4g0028721 | 95.909 | 220 | 9 | 0 | 30 | 249 | 4 | 223 | 1.32e-157 | 438 |
| Msa0682510 | MtrunA17_Chr4g0028741 | 74.349 | 269 | 66 | 3 | 1 | 267 | 1 | 268 | 1.33e-145 | 409 |
| Msa0682510 | MtrunA17_Chr4g0028731 | 65.432 | 243 | 28 | 3 | 30 | 272 | 4 | 190 | 4.55e-101 | 293 |
| Msa0682510 | MtrunA17_Chr1g0180371 | 50.800 | 250 | 118 | 2 | 21 | 266 | 24 | 272 | 1.68e-90 | 269 |
| Msa0682510 | MtrunA17_Chr1g0180331 | 46.241 | 266 | 139 | 2 | 13 | 274 | 15 | 280 | 1.61e-87 | 262 |
| Msa0682510 | MtrunA17_Chr7g0257091 | 46.124 | 258 | 132 | 4 | 10 | 264 | 5 | 258 | 1.73e-75 | 231 |
| Msa0682510 | MtrunA17_Chr7g0264911 | 48.325 | 209 | 101 | 5 | 64 | 266 | 1 | 208 | 5.96e-60 | 189 |
| Msa0682510 | MtrunA17_Chr1g0178601 | 36.154 | 260 | 152 | 3 | 13 | 266 | 11 | 262 | 4.99e-52 | 171 |
| Msa0682510 | MtrunA17_Chr1g0178591 | 36.471 | 255 | 155 | 3 | 18 | 266 | 9 | 262 | 6.06e-52 | 171 |
| Msa0682510 | MtrunA17_Chr1g0178541 | 33.146 | 178 | 109 | 3 | 95 | 266 | 3 | 176 | 2.89e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682510 | AT1G08080.1 | 54.074 | 270 | 120 | 1 | 1 | 266 | 1 | 270 | 3.48e-105 | 307 |
| Msa0682510 | AT2G28210.1 | 52.920 | 274 | 125 | 2 | 1 | 270 | 1 | 274 | 2.31e-103 | 302 |
| Msa0682510 | AT1G08065.1 | 51.311 | 267 | 126 | 3 | 3 | 266 | 2 | 267 | 3.70e-95 | 281 |
| Msa0682510 | AT4G20990.1 | 44.231 | 260 | 137 | 4 | 10 | 266 | 8 | 262 | 3.36e-76 | 233 |
| Msa0682510 | AT5G04180.1 | 43.969 | 257 | 140 | 2 | 13 | 268 | 6 | 259 | 9.76e-68 | 211 |
| Msa0682510 | AT4G21000.1 | 43.627 | 204 | 111 | 2 | 27 | 230 | 28 | 227 | 4.09e-62 | 197 |
| Msa0682510 | AT5G56330.1 | 43.852 | 244 | 96 | 2 | 29 | 270 | 133 | 337 | 1.69e-60 | 195 |
| Msa0682510 | AT5G56330.2 | 49.714 | 175 | 86 | 1 | 29 | 201 | 133 | 307 | 5.76e-55 | 180 |
| Msa0682510 | AT3G52720.3 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa0682510 | AT3G52720.4 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa0682510 | AT3G52720.1 | 36.260 | 262 | 157 | 3 | 13 | 266 | 5 | 264 | 3.57e-54 | 177 |
| Msa0682510 | AT2G28210.2 | 50.694 | 144 | 67 | 2 | 1 | 140 | 1 | 144 | 9.48e-47 | 154 |
| Msa0682510 | AT3G52720.2 | 34.649 | 228 | 139 | 3 | 13 | 232 | 5 | 230 | 2.37e-42 | 145 |
Find 42 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGATTTGTTGAATAAA+AGG | 0.172589 | 4_4:+44209834 | Msa0682510:CDS |
| TCAAGCTATCTACAAATTAA+TGG | 0.229085 | 4_4:+44210075 | Msa0682510:CDS |
| TGCACTAAACGGTTGTTTAA+TGG | 0.256782 | 4_4:-44211293 | None:intergenic |
| GTGATCAAGGACCACAAAAT+TGG | 0.265747 | 4_4:+44209759 | Msa0682510:CDS |
| ACATTAAACCCGAATGGTTT+AGG | 0.297215 | 4_4:+44209786 | Msa0682510:CDS |
| CCCTCTGAACACACCATAGA+TGG | 0.349456 | 4_4:+44210135 | Msa0682510:CDS |
| TGATCAAGGACCACAAAATT+GGG | 0.363464 | 4_4:+44209760 | Msa0682510:CDS |
| ATAGTTGAGAAAGGATTTAG+AGG | 0.384121 | 4_4:+44210752 | Msa0682510:intron |
| CTTGCGATGAAAATATTACT+TGG | 0.386829 | 4_4:+44210886 | Msa0682510:CDS |
| GTTCAAATTGTGTCCAATCT+AGG | 0.410254 | 4_4:+44209857 | Msa0682510:CDS |
| TCAGGAGAAACGGCAGTGAT+TGG | 0.419054 | 4_4:+44210576 | Msa0682510:CDS |
| ACAGGAGAAGAAAGAGAAGT+TGG | 0.420336 | 4_4:+44210789 | Msa0682510:CDS |
| TATTGATTTGTTGAATAAAA+GGG | 0.422766 | 4_4:+44209835 | Msa0682510:CDS |
| ATCACTGCCGTTTCTCCTGA+TGG | 0.425732 | 4_4:-44210573 | None:intergenic |
| TTTATATATATAGTTGAGAA+AGG | 0.434264 | 4_4:+44210743 | Msa0682510:intron |
| GTTGGATCTAGAGTTACATT+TGG | 0.435599 | 4_4:+44210539 | Msa0682510:CDS |
| ACCAATGACAAGAAAAGATC+TGG | 0.465955 | 4_4:-44210621 | None:intergenic |
| TTGTTGAATTGAATCATCCT+AGG | 0.466504 | 4_4:-44210822 | None:intergenic |
| TCAGGTGAAATTTGTTTCAA+AGG | 0.466663 | 4_4:+44211059 | Msa0682510:intron |
| GAGGCAATTTCTACTAGTAC+AGG | 0.472807 | 4_4:+44210771 | Msa0682510:CDS |
| ATTGGAATATTGTACAAGAC+TGG | 0.473071 | 4_4:+44210594 | Msa0682510:CDS |
| GTTTGTTGAGTTGCACTAAA+CGG | 0.478039 | 4_4:-44211304 | None:intergenic |
| GCCATCTATGGTGTGTTCAG+AGG | 0.478240 | 4_4:-44210136 | None:intergenic |
| TATGATGAAGATAGTGATCA+AGG | 0.486328 | 4_4:+44209746 | Msa0682510:CDS |
| GATCTGAAGTGGTCCTAGAT+TGG | 0.490623 | 4_4:-44209870 | None:intergenic |
| ATGCATTATTATAGATACAT+TGG | 0.492032 | 4_4:+44210846 | Msa0682510:CDS |
| CCAACTTCTCGAGACAAAGC+TGG | 0.493620 | 4_4:-44209046 | None:intergenic |
| CCATCTATGGTGTGTTCAGA+GGG | 0.499462 | 4_4:-44210135 | None:intergenic |
| AAATAGGGGTCATGATATCA+TGG | 0.510800 | 4_4:+44209922 | Msa0682510:CDS |
| CGGTTGTTTAATGGTTGCAA+TGG | 0.511747 | 4_4:-44211284 | None:intergenic |
| CCAGCTTTGTCTCGAGAAGT+TGG | 0.513380 | 4_4:+44209046 | Msa0682510:CDS |
| AACACACCATAGATGGCAAA+AGG | 0.530334 | 4_4:+44210142 | Msa0682510:CDS |
| AAGTTGGTGTAATTGATCCT+AGG | 0.536140 | 4_4:+44210805 | Msa0682510:CDS |
| TGAAACTCCATCAGGAGAAA+CGG | 0.536872 | 4_4:+44210566 | Msa0682510:CDS |
| TACTTGGACAATTGTTAGAG+AGG | 0.553555 | 4_4:+44210902 | Msa0682510:CDS |
| TTGGTACATGAAACTCCATC+AGG | 0.557615 | 4_4:+44210558 | Msa0682510:CDS |
| CAACTTCTCGAGACAAAGCT+GGG | 0.569842 | 4_4:-44209045 | None:intergenic |
| GGGGAGACATTAAACCCGAA+TGG | 0.588939 | 4_4:+44209780 | Msa0682510:CDS |
| GGATTGTAGTTGATCTGAAG+TGG | 0.602641 | 4_4:-44209881 | None:intergenic |
| AAAGTAACTTACATCATGAA+CGG | 0.606564 | 4_4:-44211106 | None:intergenic |
| ATGTACTTAAACAGTTACAT+TGG | 0.630332 | 4_4:+44210106 | Msa0682510:CDS |
| GATCAAGGACCACAAAATTG+GGG | 0.666037 | 4_4:+44209761 | Msa0682510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTAATAAAAAGTAA+TGG | - | chr4_4:44209126-44209145 | None:intergenic | 10.0% |
| !!! | ACATATTTCATTTAATTTAA+TGG | + | chr4_4:44209408-44209427 | Msa0682510:intron | 10.0% |
| !! | ATATTTATATGAATTATTAG+TGG | + | chr4_4:44209558-44209577 | Msa0682510:intron | 10.0% |
| !! | TTAATTCAAAGAAATTATTA+GGG | - | chr4_4:44210022-44210041 | None:intergenic | 10.0% |
| !! | ATTAATTCAAAGAAATTATT+AGG | - | chr4_4:44210023-44210042 | None:intergenic | 10.0% |
| !! | TATTATATCTATTGAATAAA+TGG | + | chr4_4:44210271-44210290 | Msa0682510:intron | 10.0% |
| !!! | AATAAAATAACTAGTTTAAT+TGG | + | chr4_4:44210966-44210985 | Msa0682510:intron | 10.0% |
| !! | ATTGATATTACAAATAATAT+AGG | - | chr4_4:44211141-44211160 | None:intergenic | 10.0% |
| !!! | AAAGTTTTAATAAAAAGTAA+TGG | - | chr4_4:44209126-44209145 | None:intergenic | 10.0% |
| !!! | ACATATTTCATTTAATTTAA+TGG | + | chr4_4:44209408-44209427 | Msa0682510:intron | 10.0% |
| !! | ATATTTATATGAATTATTAG+TGG | + | chr4_4:44209558-44209577 | Msa0682510:intron | 10.0% |
| !! | TTAATTCAAAGAAATTATTA+GGG | - | chr4_4:44210022-44210041 | None:intergenic | 10.0% |
| !! | ATTAATTCAAAGAAATTATT+AGG | - | chr4_4:44210023-44210042 | None:intergenic | 10.0% |
| !! | TATTATATCTATTGAATAAA+TGG | + | chr4_4:44210271-44210290 | Msa0682510:intron | 10.0% |
| !!! | AATAAAATAACTAGTTTAAT+TGG | + | chr4_4:44210966-44210985 | Msa0682510:intron | 10.0% |
| !! | ATTGATATTACAAATAATAT+AGG | - | chr4_4:44211141-44211160 | None:intergenic | 10.0% |
| !!! | TATTTCATTTAATTTAATGG+TGG | + | chr4_4:44209411-44209430 | Msa0682510:intron | 15.0% |
| !!! | ATTTCATTTAATTTAATGGT+GGG | + | chr4_4:44209412-44209431 | Msa0682510:intron | 15.0% |
| !!! | TATTGATTTGTTGAATAAAA+GGG | + | chr4_4:44209835-44209854 | Msa0682510:CDS | 15.0% |
| !! | TAATTCAAAGAAATTATTAG+GGG | - | chr4_4:44210021-44210040 | None:intergenic | 15.0% |
| !! | TTAAACCTAATATTATCTTA+AGG | - | chr4_4:44210324-44210343 | None:intergenic | 15.0% |
| !! | AGATAATATTAGGTTTAATT+TGG | + | chr4_4:44210326-44210345 | Msa0682510:intron | 15.0% |
| !! | TTTATATATATAGTTGAGAA+AGG | + | chr4_4:44210743-44210762 | Msa0682510:intron | 15.0% |
| !!! | GTTTAAAACATAAGATATTA+TGG | - | chr4_4:44211224-44211243 | None:intergenic | 15.0% |
| !!! | TATTTCATTTAATTTAATGG+TGG | + | chr4_4:44209411-44209430 | Msa0682510:intron | 15.0% |
| !!! | ATTTCATTTAATTTAATGGT+GGG | + | chr4_4:44209412-44209431 | Msa0682510:intron | 15.0% |
| !!! | TATTGATTTGTTGAATAAAA+GGG | + | chr4_4:44209835-44209854 | Msa0682510:CDS | 15.0% |
| !! | TAATTCAAAGAAATTATTAG+GGG | - | chr4_4:44210021-44210040 | None:intergenic | 15.0% |
| !! | TTAAACCTAATATTATCTTA+AGG | - | chr4_4:44210324-44210343 | None:intergenic | 15.0% |
| !! | AGATAATATTAGGTTTAATT+TGG | + | chr4_4:44210326-44210345 | Msa0682510:intron | 15.0% |
| !! | TTTATATATATAGTTGAGAA+AGG | + | chr4_4:44210743-44210762 | Msa0682510:intron | 15.0% |
| !!! | GTTTAAAACATAAGATATTA+TGG | - | chr4_4:44211224-44211243 | None:intergenic | 15.0% |
| !! | TGATTAAAATTAAGAGATGA+TGG | - | chr4_4:44209149-44209168 | None:intergenic | 20.0% |
| !! | AAACAAAATCATGTTTACTA+TGG | - | chr4_4:44209322-44209341 | None:intergenic | 20.0% |
| !! | TTATTTGTACACCATAAAAT+TGG | + | chr4_4:44209486-44209505 | Msa0682510:intron | 20.0% |
| !! | TGTTAACACACAAAAATAAA+AGG | + | chr4_4:44209523-44209542 | Msa0682510:intron | 20.0% |
| !! | TATTAGTGGTAAAATATCAT+AGG | + | chr4_4:44209572-44209591 | Msa0682510:intron | 20.0% |
| !! | AAATATCATAGGATTATTAG+TGG | + | chr4_4:44209583-44209602 | Msa0682510:intron | 20.0% |
| !!! | CTTTTATTCAACAAATCAAT+AGG | - | chr4_4:44209836-44209855 | None:intergenic | 20.0% |
| !!! | CTATTGATTTGTTGAATAAA+AGG | + | chr4_4:44209834-44209853 | Msa0682510:CDS | 20.0% |
| !! | TAATGCAACTCTTAAAAATA+GGG | + | chr4_4:44209907-44209926 | Msa0682510:CDS | 20.0% |
| !!! | ATTAGGTTTAATTTGGATAA+AGG | + | chr4_4:44210333-44210352 | Msa0682510:intron | 20.0% |
| !! | TATTTATTTGATCACTCATA+CGG | + | chr4_4:44210468-44210487 | Msa0682510:intron | 20.0% |
| !! | ATGCATTATTATAGATACAT+TGG | + | chr4_4:44210846-44210865 | Msa0682510:CDS | 20.0% |
| !!! | AGTGATTAATTTAATTTGCT+AGG | + | chr4_4:44210927-44210946 | Msa0682510:intron | 20.0% |
| !! | TTTAATTGGTCACATTTATT+AGG | + | chr4_4:44210980-44210999 | Msa0682510:intron | 20.0% |
| !! | TATAATCTATTCAAATGATC+AGG | + | chr4_4:44211041-44211060 | Msa0682510:intron | 20.0% |
| !! | ATATTTATCTCAACCTAATT+AGG | + | chr4_4:44211159-44211178 | Msa0682510:intron | 20.0% |
| !! | ATCAATAAAATCTTTATGCA+AGG | + | chr4_4:44211192-44211211 | Msa0682510:intron | 20.0% |
| !! | TGATTAAAATTAAGAGATGA+TGG | - | chr4_4:44209149-44209168 | None:intergenic | 20.0% |
| !! | AAACAAAATCATGTTTACTA+TGG | - | chr4_4:44209322-44209341 | None:intergenic | 20.0% |
| !! | TTATTTGTACACCATAAAAT+TGG | + | chr4_4:44209486-44209505 | Msa0682510:intron | 20.0% |
| !! | TGTTAACACACAAAAATAAA+AGG | + | chr4_4:44209523-44209542 | Msa0682510:intron | 20.0% |
| !! | TATTAGTGGTAAAATATCAT+AGG | + | chr4_4:44209572-44209591 | Msa0682510:intron | 20.0% |
| !! | AAATATCATAGGATTATTAG+TGG | + | chr4_4:44209583-44209602 | Msa0682510:intron | 20.0% |
| !!! | CTTTTATTCAACAAATCAAT+AGG | - | chr4_4:44209836-44209855 | None:intergenic | 20.0% |
| !!! | CTATTGATTTGTTGAATAAA+AGG | + | chr4_4:44209834-44209853 | Msa0682510:CDS | 20.0% |
| !! | TAATGCAACTCTTAAAAATA+GGG | + | chr4_4:44209907-44209926 | Msa0682510:CDS | 20.0% |
| !!! | ATTAGGTTTAATTTGGATAA+AGG | + | chr4_4:44210333-44210352 | Msa0682510:intron | 20.0% |
| !! | TATTTATTTGATCACTCATA+CGG | + | chr4_4:44210468-44210487 | Msa0682510:intron | 20.0% |
| !! | ATGCATTATTATAGATACAT+TGG | + | chr4_4:44210846-44210865 | Msa0682510:CDS | 20.0% |
| !!! | AGTGATTAATTTAATTTGCT+AGG | + | chr4_4:44210927-44210946 | Msa0682510:intron | 20.0% |
| !! | TTTAATTGGTCACATTTATT+AGG | + | chr4_4:44210980-44210999 | Msa0682510:intron | 20.0% |
| !! | TATAATCTATTCAAATGATC+AGG | + | chr4_4:44211041-44211060 | Msa0682510:intron | 20.0% |
| !! | ATATTTATCTCAACCTAATT+AGG | + | chr4_4:44211159-44211178 | Msa0682510:intron | 20.0% |
| !! | ATCAATAAAATCTTTATGCA+AGG | + | chr4_4:44211192-44211211 | Msa0682510:intron | 20.0% |
| ! | TCAGGAAATTAAAACTACAT+TGG | - | chr4_4:44209197-44209216 | None:intergenic | 25.0% |
| !! | TTGTTTATTGGCCAATTTTA+TGG | - | chr4_4:44209500-44209519 | None:intergenic | 25.0% |
| !!! | GTGTTAACACTTTTGTTTAT+TGG | - | chr4_4:44209512-44209531 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTAATTGCAG+AGG | + | chr4_4:44209706-44209725 | Msa0682510:intron | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | - | chr4_4:44209905-44209924 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGAGTTGCATTAG+AGG | - | chr4_4:44209906-44209925 | None:intergenic | 25.0% |
| ! | CTAATGCAACTCTTAAAAAT+AGG | + | chr4_4:44209906-44209925 | Msa0682510:CDS | 25.0% |
| ! | AATGCAACTCTTAAAAATAG+GGG | + | chr4_4:44209908-44209927 | Msa0682510:CDS | 25.0% |
| !!! | TTAATTTGCTTATGAATAGC+TGG | + | chr4_4:44210038-44210057 | Msa0682510:intron | 25.0% |
| ! | TCAAGCTATCTACAAATTAA+TGG | + | chr4_4:44210075-44210094 | Msa0682510:CDS | 25.0% |
| ! | ATGTACTTAAACAGTTACAT+TGG | + | chr4_4:44210106-44210125 | Msa0682510:CDS | 25.0% |
| !! | AGGTACATACTTTTATAACA+TGG | + | chr4_4:44210162-44210181 | Msa0682510:intron | 25.0% |
| !! | ATAGATAGAGTATCATGATT+TGG | - | chr4_4:44210221-44210240 | None:intergenic | 25.0% |
| ! | TTACACCGATATTATTAAGA+TGG | - | chr4_4:44210362-44210381 | None:intergenic | 25.0% |
| ! | ATTTATTTGATCACTCATAC+GGG | + | chr4_4:44210469-44210488 | Msa0682510:intron | 25.0% |
| !! | CTAATAATTAATTGAGTTGC+AGG | + | chr4_4:44210517-44210536 | Msa0682510:intron | 25.0% |
| ! | AAAGTAACTTACATCATGAA+CGG | - | chr4_4:44211109-44211128 | None:intergenic | 25.0% |
| !!! | GATATTCTAAAGTCCTAATT+AGG | - | chr4_4:44211175-44211194 | None:intergenic | 25.0% |
| ! | TCAGGAAATTAAAACTACAT+TGG | - | chr4_4:44209197-44209216 | None:intergenic | 25.0% |
| !! | TTGTTTATTGGCCAATTTTA+TGG | - | chr4_4:44209500-44209519 | None:intergenic | 25.0% |
| !!! | GTGTTAACACTTTTGTTTAT+TGG | - | chr4_4:44209512-44209531 | None:intergenic | 25.0% |
| ! | TCTTCTTAATTTAATTGCAG+AGG | + | chr4_4:44209706-44209725 | Msa0682510:intron | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | - | chr4_4:44209905-44209924 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGAGTTGCATTAG+AGG | - | chr4_4:44209906-44209925 | None:intergenic | 25.0% |
| ! | CTAATGCAACTCTTAAAAAT+AGG | + | chr4_4:44209906-44209925 | Msa0682510:CDS | 25.0% |
| ! | AATGCAACTCTTAAAAATAG+GGG | + | chr4_4:44209908-44209927 | Msa0682510:CDS | 25.0% |
| !!! | TTAATTTGCTTATGAATAGC+TGG | + | chr4_4:44210038-44210057 | Msa0682510:intron | 25.0% |
| ! | TCAAGCTATCTACAAATTAA+TGG | + | chr4_4:44210075-44210094 | Msa0682510:CDS | 25.0% |
| ! | ATGTACTTAAACAGTTACAT+TGG | + | chr4_4:44210106-44210125 | Msa0682510:CDS | 25.0% |
| !! | AGGTACATACTTTTATAACA+TGG | + | chr4_4:44210162-44210181 | Msa0682510:intron | 25.0% |
| !! | ATAGATAGAGTATCATGATT+TGG | - | chr4_4:44210221-44210240 | None:intergenic | 25.0% |
| ! | TTACACCGATATTATTAAGA+TGG | - | chr4_4:44210362-44210381 | None:intergenic | 25.0% |
| ! | ATTTATTTGATCACTCATAC+GGG | + | chr4_4:44210469-44210488 | Msa0682510:intron | 25.0% |
| !! | CTAATAATTAATTGAGTTGC+AGG | + | chr4_4:44210517-44210536 | Msa0682510:intron | 25.0% |
| ! | AAAGTAACTTACATCATGAA+CGG | - | chr4_4:44211109-44211128 | None:intergenic | 25.0% |
| !!! | GATATTCTAAAGTCCTAATT+AGG | - | chr4_4:44211175-44211194 | None:intergenic | 25.0% |
| !! | GCTTCAATTGCTTTGATTTT+TGG | + | chr4_4:44208989-44209008 | Msa0682510:CDS | 30.0% |
| ! | CAAAGCATCTAAGCAAAAAA+AGG | - | chr4_4:44209083-44209102 | None:intergenic | 30.0% |
| TTCCTGAACTTAATCAACTT+CGG | + | chr4_4:44209210-44209229 | Msa0682510:intron | 30.0% | |
| ATATTTAGTGTATGTGAGTC+TGG | - | chr4_4:44209659-44209678 | None:intergenic | 30.0% | |
| TATGATGAAGATAGTGATCA+AGG | + | chr4_4:44209746-44209765 | Msa0682510:CDS | 30.0% | |
| ! | ATTTTTGCACCTAAACCATT+CGG | - | chr4_4:44209798-44209817 | None:intergenic | 30.0% |
| CACAGCCTTAAGATAATATT+AGG | + | chr4_4:44210316-44210335 | Msa0682510:intron | 30.0% | |
| GGTGTCCATCTTAATAATAT+CGG | + | chr4_4:44210354-44210373 | Msa0682510:intron | 30.0% | |
| ATAACCCTAATTAACCATTG+AGG | + | chr4_4:44210395-44210414 | Msa0682510:intron | 30.0% | |
| ATCTCCTCAATGGTTAATTA+GGG | - | chr4_4:44210402-44210421 | None:intergenic | 30.0% | |
| AATCTCCTCAATGGTTAATT+AGG | - | chr4_4:44210403-44210422 | None:intergenic | 30.0% | |
| ! | TAATTAATTGAGTTGCAGGT+TGG | + | chr4_4:44210521-44210540 | Msa0682510:intron | 30.0% |
| ATTGGAATATTGTACAAGAC+TGG | + | chr4_4:44210594-44210613 | Msa0682510:CDS | 30.0% | |
| ATAGTTGAGAAAGGATTTAG+AGG | + | chr4_4:44210752-44210771 | Msa0682510:intron | 30.0% | |
| TTGTTGAATTGAATCATCCT+AGG | - | chr4_4:44210825-44210844 | None:intergenic | 30.0% | |
| ! | GTAATATTTTCATCGCAAGA+AGG | - | chr4_4:44210885-44210904 | None:intergenic | 30.0% |
| CTTGCGATGAAAATATTACT+TGG | + | chr4_4:44210886-44210905 | Msa0682510:CDS | 30.0% | |
| ! | TCAGGTGAAATTTGTTTCAA+AGG | + | chr4_4:44211059-44211078 | Msa0682510:intron | 30.0% |
| !! | GCTTCAATTGCTTTGATTTT+TGG | + | chr4_4:44208989-44209008 | Msa0682510:CDS | 30.0% |
| ! | CAAAGCATCTAAGCAAAAAA+AGG | - | chr4_4:44209083-44209102 | None:intergenic | 30.0% |
| TTCCTGAACTTAATCAACTT+CGG | + | chr4_4:44209210-44209229 | Msa0682510:intron | 30.0% | |
| ATATTTAGTGTATGTGAGTC+TGG | - | chr4_4:44209659-44209678 | None:intergenic | 30.0% | |
| TATGATGAAGATAGTGATCA+AGG | + | chr4_4:44209746-44209765 | Msa0682510:CDS | 30.0% | |
| ! | ATTTTTGCACCTAAACCATT+CGG | - | chr4_4:44209798-44209817 | None:intergenic | 30.0% |
| CACAGCCTTAAGATAATATT+AGG | + | chr4_4:44210316-44210335 | Msa0682510:intron | 30.0% | |
| GGTGTCCATCTTAATAATAT+CGG | + | chr4_4:44210354-44210373 | Msa0682510:intron | 30.0% | |
| ATAACCCTAATTAACCATTG+AGG | + | chr4_4:44210395-44210414 | Msa0682510:intron | 30.0% | |
| ATCTCCTCAATGGTTAATTA+GGG | - | chr4_4:44210402-44210421 | None:intergenic | 30.0% | |
| AATCTCCTCAATGGTTAATT+AGG | - | chr4_4:44210403-44210422 | None:intergenic | 30.0% | |
| ! | TAATTAATTGAGTTGCAGGT+TGG | + | chr4_4:44210521-44210540 | Msa0682510:intron | 30.0% |
| ATTGGAATATTGTACAAGAC+TGG | + | chr4_4:44210594-44210613 | Msa0682510:CDS | 30.0% | |
| ATAGTTGAGAAAGGATTTAG+AGG | + | chr4_4:44210752-44210771 | Msa0682510:intron | 30.0% | |
| TTGTTGAATTGAATCATCCT+AGG | - | chr4_4:44210825-44210844 | None:intergenic | 30.0% | |
| ! | GTAATATTTTCATCGCAAGA+AGG | - | chr4_4:44210885-44210904 | None:intergenic | 30.0% |
| CTTGCGATGAAAATATTACT+TGG | + | chr4_4:44210886-44210905 | Msa0682510:CDS | 30.0% | |
| ! | TCAGGTGAAATTTGTTTCAA+AGG | + | chr4_4:44211059-44211078 | Msa0682510:intron | 30.0% |
| TCATGTTTACTATGGCGATT+AGG | - | chr4_4:44209314-44209333 | None:intergenic | 35.0% | |
| ATGATATTGCACCATGAACA+AGG | + | chr4_4:44209358-44209377 | Msa0682510:intron | 35.0% | |
| TGATATTGCACCATGAACAA+GGG | + | chr4_4:44209359-44209378 | Msa0682510:intron | 35.0% | |
| GATAAAAAGACCCTTGTTCA+TGG | - | chr4_4:44209372-44209391 | None:intergenic | 35.0% | |
| TGATCAAGGACCACAAAATT+GGG | + | chr4_4:44209760-44209779 | Msa0682510:CDS | 35.0% | |
| ! | TTAATGTCTCCCCAATTTTG+TGG | - | chr4_4:44209773-44209792 | None:intergenic | 35.0% |
| ACATTAAACCCGAATGGTTT+AGG | + | chr4_4:44209786-44209805 | Msa0682510:CDS | 35.0% | |
| ! | TTTTTGCACCTAAACCATTC+GGG | - | chr4_4:44209797-44209816 | None:intergenic | 35.0% |
| GAATGGTTTAGGTGCAAAAA+TGG | + | chr4_4:44209797-44209816 | Msa0682510:CDS | 35.0% | |
| GTTCAAATTGTGTCCAATCT+AGG | + | chr4_4:44209857-44209876 | Msa0682510:CDS | 35.0% | |
| AAATAGGGGTCATGATATCA+TGG | + | chr4_4:44209922-44209941 | Msa0682510:CDS | 35.0% | |
| ! | TATGTACCTTTTGCCATCTA+TGG | - | chr4_4:44210151-44210170 | None:intergenic | 35.0% |
| TAGTGGTTCAAGTAGAACTT+TGG | - | chr4_4:44210197-44210216 | None:intergenic | 35.0% | |
| ! | GAGTATCATGATTTGGATAG+TGG | - | chr4_4:44210214-44210233 | None:intergenic | 35.0% |
| TAATATCGGTGTAAGCCTTA+TGG | + | chr4_4:44210368-44210387 | Msa0682510:intron | 35.0% | |
| ATTAGGGTTATCTGTCCATA+AGG | - | chr4_4:44210386-44210405 | None:intergenic | 35.0% | |
| GCAAGATAAAATCTCCTCAA+TGG | - | chr4_4:44210412-44210431 | None:intergenic | 35.0% | |
| ! | GTTGGATCTAGAGTTACATT+TGG | + | chr4_4:44210539-44210558 | Msa0682510:CDS | 35.0% |
| ! | ACCAGATCTTTTCTTGTCAT+TGG | + | chr4_4:44210620-44210639 | Msa0682510:CDS | 35.0% |
| ACCAATGACAAGAAAAGATC+TGG | - | chr4_4:44210624-44210643 | None:intergenic | 35.0% | |
| CAAAAACATGTAGATCACAC+TGG | - | chr4_4:44210671-44210690 | None:intergenic | 35.0% | |
| !! | AAGTTGGTGTAATTGATCCT+AGG | + | chr4_4:44210805-44210824 | Msa0682510:CDS | 35.0% |
| TACTTGGACAATTGTTAGAG+AGG | + | chr4_4:44210902-44210921 | Msa0682510:CDS | 35.0% | |
| TGCACTAAACGGTTGTTTAA+TGG | - | chr4_4:44211296-44211315 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAGTTGCACTAAA+CGG | - | chr4_4:44211307-44211326 | None:intergenic | 35.0% |
| TCATGTTTACTATGGCGATT+AGG | - | chr4_4:44209314-44209333 | None:intergenic | 35.0% | |
| ATGATATTGCACCATGAACA+AGG | + | chr4_4:44209358-44209377 | Msa0682510:intron | 35.0% | |
| TGATATTGCACCATGAACAA+GGG | + | chr4_4:44209359-44209378 | Msa0682510:intron | 35.0% | |
| GATAAAAAGACCCTTGTTCA+TGG | - | chr4_4:44209372-44209391 | None:intergenic | 35.0% | |
| TGATCAAGGACCACAAAATT+GGG | + | chr4_4:44209760-44209779 | Msa0682510:CDS | 35.0% | |
| ! | TTAATGTCTCCCCAATTTTG+TGG | - | chr4_4:44209773-44209792 | None:intergenic | 35.0% |
| ACATTAAACCCGAATGGTTT+AGG | + | chr4_4:44209786-44209805 | Msa0682510:CDS | 35.0% | |
| ! | TTTTTGCACCTAAACCATTC+GGG | - | chr4_4:44209797-44209816 | None:intergenic | 35.0% |
| GAATGGTTTAGGTGCAAAAA+TGG | + | chr4_4:44209797-44209816 | Msa0682510:CDS | 35.0% | |
| GTTCAAATTGTGTCCAATCT+AGG | + | chr4_4:44209857-44209876 | Msa0682510:CDS | 35.0% | |
| AAATAGGGGTCATGATATCA+TGG | + | chr4_4:44209922-44209941 | Msa0682510:CDS | 35.0% | |
| ! | TATGTACCTTTTGCCATCTA+TGG | - | chr4_4:44210151-44210170 | None:intergenic | 35.0% |
| TAGTGGTTCAAGTAGAACTT+TGG | - | chr4_4:44210197-44210216 | None:intergenic | 35.0% | |
| ! | GAGTATCATGATTTGGATAG+TGG | - | chr4_4:44210214-44210233 | None:intergenic | 35.0% |
| TAATATCGGTGTAAGCCTTA+TGG | + | chr4_4:44210368-44210387 | Msa0682510:intron | 35.0% | |
| ATTAGGGTTATCTGTCCATA+AGG | - | chr4_4:44210386-44210405 | None:intergenic | 35.0% | |
| GCAAGATAAAATCTCCTCAA+TGG | - | chr4_4:44210412-44210431 | None:intergenic | 35.0% | |
| ! | GTTGGATCTAGAGTTACATT+TGG | + | chr4_4:44210539-44210558 | Msa0682510:CDS | 35.0% |
| ! | ACCAGATCTTTTCTTGTCAT+TGG | + | chr4_4:44210620-44210639 | Msa0682510:CDS | 35.0% |
| ACCAATGACAAGAAAAGATC+TGG | - | chr4_4:44210624-44210643 | None:intergenic | 35.0% | |
| CAAAAACATGTAGATCACAC+TGG | - | chr4_4:44210671-44210690 | None:intergenic | 35.0% | |
| !! | AAGTTGGTGTAATTGATCCT+AGG | + | chr4_4:44210805-44210824 | Msa0682510:CDS | 35.0% |
| TACTTGGACAATTGTTAGAG+AGG | + | chr4_4:44210902-44210921 | Msa0682510:CDS | 35.0% | |
| TGCACTAAACGGTTGTTTAA+TGG | - | chr4_4:44211296-44211315 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAGTTGCACTAAA+CGG | - | chr4_4:44211307-44211326 | None:intergenic | 35.0% |
| ! | AGCCGAAGTTGATTAAGTTC+AGG | - | chr4_4:44209215-44209234 | None:intergenic | 40.0% |
| ! | ACTAACTTGTGCATGATGCA+AGG | + | chr4_4:44209457-44209476 | Msa0682510:intron | 40.0% |
| ! | GCTACTTGACTCTTTTAGTG+GGG | - | chr4_4:44209637-44209656 | None:intergenic | 40.0% |
| ! | GGCTACTTGACTCTTTTAGT+GGG | - | chr4_4:44209638-44209657 | None:intergenic | 40.0% |
| ! | TGGCTACTTGACTCTTTTAG+TGG | - | chr4_4:44209639-44209658 | None:intergenic | 40.0% |
| GTGATCAAGGACCACAAAAT+TGG | + | chr4_4:44209759-44209778 | Msa0682510:CDS | 40.0% | |
| GATCAAGGACCACAAAATTG+GGG | + | chr4_4:44209761-44209780 | Msa0682510:CDS | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | - | chr4_4:44209884-44209903 | None:intergenic | 40.0% | |
| AACACACCATAGATGGCAAA+AGG | + | chr4_4:44210142-44210161 | Msa0682510:CDS | 40.0% | |
| TTGGTACATGAAACTCCATC+AGG | + | chr4_4:44210558-44210577 | Msa0682510:CDS | 40.0% | |
| TGAAACTCCATCAGGAGAAA+CGG | + | chr4_4:44210566-44210585 | Msa0682510:CDS | 40.0% | |
| GAGGCAATTTCTACTAGTAC+AGG | + | chr4_4:44210771-44210790 | Msa0682510:CDS | 40.0% | |
| ACAGGAGAAGAAAGAGAAGT+TGG | + | chr4_4:44210789-44210808 | Msa0682510:CDS | 40.0% | |
| AACATTGACCTCAACTTTGC+AGG | + | chr4_4:44211241-44211260 | Msa0682510:intron | 40.0% | |
| CGGTTGTTTAATGGTTGCAA+TGG | - | chr4_4:44211287-44211306 | None:intergenic | 40.0% | |
| ! | AGCCGAAGTTGATTAAGTTC+AGG | - | chr4_4:44209215-44209234 | None:intergenic | 40.0% |
| ! | ACTAACTTGTGCATGATGCA+AGG | + | chr4_4:44209457-44209476 | Msa0682510:intron | 40.0% |
| ! | GCTACTTGACTCTTTTAGTG+GGG | - | chr4_4:44209637-44209656 | None:intergenic | 40.0% |
| ! | GGCTACTTGACTCTTTTAGT+GGG | - | chr4_4:44209638-44209657 | None:intergenic | 40.0% |
| ! | TGGCTACTTGACTCTTTTAG+TGG | - | chr4_4:44209639-44209658 | None:intergenic | 40.0% |
| GTGATCAAGGACCACAAAAT+TGG | + | chr4_4:44209759-44209778 | Msa0682510:CDS | 40.0% | |
| GATCAAGGACCACAAAATTG+GGG | + | chr4_4:44209761-44209780 | Msa0682510:CDS | 40.0% | |
| GGATTGTAGTTGATCTGAAG+TGG | - | chr4_4:44209884-44209903 | None:intergenic | 40.0% | |
| AACACACCATAGATGGCAAA+AGG | + | chr4_4:44210142-44210161 | Msa0682510:CDS | 40.0% | |
| TTGGTACATGAAACTCCATC+AGG | + | chr4_4:44210558-44210577 | Msa0682510:CDS | 40.0% | |
| TGAAACTCCATCAGGAGAAA+CGG | + | chr4_4:44210566-44210585 | Msa0682510:CDS | 40.0% | |
| GAGGCAATTTCTACTAGTAC+AGG | + | chr4_4:44210771-44210790 | Msa0682510:CDS | 40.0% | |
| ACAGGAGAAGAAAGAGAAGT+TGG | + | chr4_4:44210789-44210808 | Msa0682510:CDS | 40.0% | |
| AACATTGACCTCAACTTTGC+AGG | + | chr4_4:44211241-44211260 | Msa0682510:intron | 40.0% | |
| CGGTTGTTTAATGGTTGCAA+TGG | - | chr4_4:44211287-44211306 | None:intergenic | 40.0% | |
| CAACTTCTCGAGACAAAGCT+GGG | - | chr4_4:44209048-44209067 | None:intergenic | 45.0% | |
| ! | GATCTGAAGTGGTCCTAGAT+TGG | - | chr4_4:44209873-44209892 | None:intergenic | 45.0% |
| CCATCTATGGTGTGTTCAGA+GGG | - | chr4_4:44210138-44210157 | None:intergenic | 45.0% | |
| ATCTGAGTCCTGCAAAGTTG+AGG | - | chr4_4:44211252-44211271 | None:intergenic | 45.0% | |
| CAACTTCTCGAGACAAAGCT+GGG | - | chr4_4:44209048-44209067 | None:intergenic | 45.0% | |
| ! | GATCTGAAGTGGTCCTAGAT+TGG | - | chr4_4:44209873-44209892 | None:intergenic | 45.0% |
| CCATCTATGGTGTGTTCAGA+GGG | - | chr4_4:44210138-44210157 | None:intergenic | 45.0% | |
| ATCTGAGTCCTGCAAAGTTG+AGG | - | chr4_4:44211252-44211271 | None:intergenic | 45.0% | |
| !! | ATATACTAAATTAATTAATT+AGG | - | chr4_4:44210704-44210723 | None:intergenic | 5.0% |
| !!! | ATTTTATTTAATAAATTAAG+AGG | - | chr4_4:44210954-44210973 | None:intergenic | 5.0% |
| !! | ATATACTAAATTAATTAATT+AGG | - | chr4_4:44210704-44210723 | None:intergenic | 5.0% |
| !!! | ATTTTATTTAATAAATTAAG+AGG | - | chr4_4:44210954-44210973 | None:intergenic | 5.0% |
| CCAACTTCTCGAGACAAAGC+TGG | - | chr4_4:44209049-44209068 | None:intergenic | 50.0% | |
| ! | CCAGCTTTGTCTCGAGAAGT+TGG | + | chr4_4:44209046-44209065 | Msa0682510:CDS | 50.0% |
| GGGGAGACATTAAACCCGAA+TGG | + | chr4_4:44209780-44209799 | Msa0682510:CDS | 50.0% | |
| CCCTCTGAACACACCATAGA+TGG | + | chr4_4:44210135-44210154 | Msa0682510:CDS | 50.0% | |
| GCCATCTATGGTGTGTTCAG+AGG | - | chr4_4:44210139-44210158 | None:intergenic | 50.0% | |
| ! | ATCACTGCCGTTTCTCCTGA+TGG | - | chr4_4:44210576-44210595 | None:intergenic | 50.0% |
| TCAGGAGAAACGGCAGTGAT+TGG | + | chr4_4:44210576-44210595 | Msa0682510:CDS | 50.0% | |
| CCAACTTCTCGAGACAAAGC+TGG | - | chr4_4:44209049-44209068 | None:intergenic | 50.0% | |
| ! | CCAGCTTTGTCTCGAGAAGT+TGG | + | chr4_4:44209046-44209065 | Msa0682510:CDS | 50.0% |
| GGGGAGACATTAAACCCGAA+TGG | + | chr4_4:44209780-44209799 | Msa0682510:CDS | 50.0% | |
| CCCTCTGAACACACCATAGA+TGG | + | chr4_4:44210135-44210154 | Msa0682510:CDS | 50.0% | |
| GCCATCTATGGTGTGTTCAG+AGG | - | chr4_4:44210139-44210158 | None:intergenic | 50.0% | |
| ! | ATCACTGCCGTTTCTCCTGA+TGG | - | chr4_4:44210576-44210595 | None:intergenic | 50.0% |
| TCAGGAGAAACGGCAGTGAT+TGG | + | chr4_4:44210576-44210595 | Msa0682510:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 44208977 | 44211346 | 44208977 | ID=Msa0682510;Name=Msa0682510 |
| chr4_4 | mRNA | 44208977 | 44211346 | 44208977 | ID=Msa0682510-mRNA-1;Parent=Msa0682510;Name=Msa0682510-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.85|1|1|7|0|274 |
| chr4_4 | exon | 44208977 | 44209067 | 44208977 | ID=Msa0682510-mRNA-1:exon:10712;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44209726 | 44209943 | 44209726 | ID=Msa0682510-mRNA-1:exon:10713;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44210057 | 44210163 | 44210057 | ID=Msa0682510-mRNA-1:exon:10714;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44210539 | 44210641 | 44210539 | ID=Msa0682510-mRNA-1:exon:10715;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44210756 | 44210923 | 44210756 | ID=Msa0682510-mRNA-1:exon:10716;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44211063 | 44211116 | 44211063 | ID=Msa0682510-mRNA-1:exon:10717;Parent=Msa0682510-mRNA-1 |
| chr4_4 | exon | 44211263 | 44211346 | 44211263 | ID=Msa0682510-mRNA-1:exon:10718;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44208977 | 44209067 | 44208977 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44209726 | 44209943 | 44209726 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44210057 | 44210163 | 44210057 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44210539 | 44210641 | 44210539 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44210756 | 44210923 | 44210756 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44211063 | 44211116 | 44211063 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| chr4_4 | CDS | 44211263 | 44211346 | 44211263 | ID=Msa0682510-mRNA-1:cds;Parent=Msa0682510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
