Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425210 | XP_003603980.2 | 82.271 | 361 | 18 | 7 | 49 | 398 | 1 | 326 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425210 | sp|Q6NPM8|HIS7_ARATH | 65.385 | 312 | 72 | 3 | 87 | 398 | 70 | 345 | 3.89e-147 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425210 | G7J7Q5 | 82.271 | 361 | 18 | 7 | 49 | 398 | 1 | 326 | 0.0 | 564 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1425210 | Msa1457780 | 0.970972 | 1.950613e-132 | -8.615850e-47 |
| Msa1298390 | Msa1425210 | 0.817219 | 3.694300e-52 | -8.615850e-47 |
| Msa0403470 | Msa1425210 | 0.800780 | 1.227200e-48 | -8.615850e-47 |
| Msa0428200 | Msa1425210 | -0.808524 | 2.969269e-50 | -8.615850e-47 |
| Msa1208450 | Msa1425210 | 0.801241 | 9.878826e-49 | -8.615850e-47 |
| Msa0968470 | Msa1425210 | 0.818129 | 2.302265e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425210 | MtrunA17_Chr3g0145001 | 82.271 | 361 | 18 | 7 | 49 | 398 | 1 | 326 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425210 | AT4G39120.1 | 65.385 | 312 | 72 | 3 | 87 | 398 | 70 | 345 | 3.96e-148 | 424 |
| Msa1425210 | AT4G39120.2 | 65.385 | 312 | 72 | 3 | 87 | 398 | 99 | 374 | 1.77e-147 | 423 |
| Msa1425210 | AT3G02870.3 | 23.372 | 261 | 148 | 5 | 119 | 365 | 19 | 241 | 5.64e-15 | 75.1 |
| Msa1425210 | AT3G02870.1 | 23.372 | 261 | 148 | 5 | 119 | 365 | 22 | 244 | 6.52e-15 | 74.7 |
| Msa1425210 | AT3G02870.2 | 23.166 | 259 | 149 | 5 | 119 | 365 | 22 | 242 | 3.39e-14 | 72.8 |
Find 106 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACTTAGTTCAGAATAAA+TGG | 0.203512 | tig0025831:+22496 | None:intergenic |
| GCATATGCTCTCTTGTCTTC+TGG | 0.208968 | tig0025831:-23312 | Msa1425210:CDS |
| ATTTCAGGGAAACCCTTATT+TGG | 0.225874 | tig0025831:-25114 | Msa1425210:intron |
| TAGCAAGGATTATGGGTTAT+TGG | 0.244682 | tig0025831:-25759 | Msa1425210:CDS |
| TCCTTCAGTAGCAAGGATTA+TGG | 0.248211 | tig0025831:-25767 | Msa1425210:CDS |
| GGAAAGAGAACTACACTAAA+TGG | 0.260270 | tig0025831:-24517 | Msa1425210:CDS |
| AGCAATGAGAGTACCAAATA+AGG | 0.271556 | tig0025831:+25101 | None:intergenic |
| GAAAGATGGATTGGAATAAC+TGG | 0.286544 | tig0025831:-24538 | Msa1425210:CDS |
| TATTTCTTCTGAAATATTTA+CGG | 0.288559 | tig0025831:+26275 | None:intergenic |
| GATAAATAAACGCCGAATAA+TGG | 0.294569 | tig0025831:+22461 | None:intergenic |
| CAGGTTAAAATTCCATTATA+TGG | 0.304659 | tig0025831:-23348 | Msa1425210:CDS |
| TTTATTCTGAACTAAGTATA+AGG | 0.324941 | tig0025831:-22493 | Msa1425210:three_prime_UTR |
| TCAATTTGTTTGGTTGGAAT+TGG | 0.328770 | tig0025831:+26413 | None:intergenic |
| AGCAAGGATTATGGGTTATT+GGG | 0.337153 | tig0025831:-25758 | Msa1425210:CDS |
| AAGACAGTGCTGATTATGTT+TGG | 0.340004 | tig0025831:-25270 | Msa1425210:CDS |
| CCTTCAGTAGCAAGGATTAT+GGG | 0.354601 | tig0025831:-25766 | Msa1425210:CDS |
| AAGGATGGACAGAGGACTTC+TGG | 0.359093 | tig0025831:+25785 | None:intergenic |
| TGCAGTTACGGAGAAGAAAA+AGG | 0.363328 | tig0025831:-25307 | Msa1425210:intron |
| TAGCAATCACAACCATATAA+TGG | 0.365852 | tig0025831:+23336 | None:intergenic |
| CCTCCAGAGCCTTCAATAAC+AGG | 0.372058 | tig0025831:+23075 | None:intergenic |
| AGGCTCATGATTCCATTATT+CGG | 0.375278 | tig0025831:-22473 | Msa1425210:three_prime_UTR |
| AGATTCATTACAATGGTAGT+AGG | 0.392307 | tig0025831:-22568 | Msa1425210:exon |
| GCATTGATACCTGTTATTGA+AGG | 0.408969 | tig0025831:-23084 | Msa1425210:CDS |
| AATGGAGAGGTCAATTTGTT+TGG | 0.411454 | tig0025831:+26403 | None:intergenic |
| CTGGGAGATGATGATGATAA+TGG | 0.419930 | tig0025831:+26385 | None:intergenic |
| TGGGTATTAGATCCTATTGA+TGG | 0.425370 | tig0025831:-25250 | Msa1425210:CDS |
| GTGGATCTTGTCGTTGAGTC+CGG | 0.426317 | tig0025831:-23285 | Msa1425210:CDS |
| AGACAGTGCTGATTATGTTT+GGG | 0.427573 | tig0025831:-25269 | Msa1425210:CDS |
| AAGCTCTTAGTTCCATCAAT+AGG | 0.428762 | tig0025831:+25238 | None:intergenic |
| ATTTATCACAACAGTTCAAA+TGG | 0.440312 | tig0025831:-22445 | Msa1425210:three_prime_UTR |
| TATAGAAACTGTTCCGGACT+GGG | 0.441001 | tig0025831:+25730 | None:intergenic |
| AGGAAGACGGATGCCGCCGC+CGG | 0.451328 | tig0025831:+26544 | None:intergenic |
| GAGAGGTCAATTTGTTTGGT+TGG | 0.458564 | tig0025831:+26407 | None:intergenic |
| ATACCTGTTATTGAAGGCTC+TGG | 0.458695 | tig0025831:-23078 | Msa1425210:CDS |
| TTATCATATAGAAACTGTTC+CGG | 0.458960 | tig0025831:+25724 | None:intergenic |
| CATTGCTCTGAGTCTAAGAC+TGG | 0.462684 | tig0025831:+26366 | None:intergenic |
| CTGGAGGTGTCATAACTGAT+TGG | 0.474782 | tig0025831:-23059 | Msa1425210:CDS |
| TGACAAACAGATTCATCAAC+AGG | 0.476165 | tig0025831:-22595 | Msa1425210:CDS |
| GATTGATCAGCAATGGTGAC+AGG | 0.483827 | tig0025831:+26121 | None:intergenic |
| AACCTGTGTTAAAAGAAAGA+TGG | 0.484728 | tig0025831:-24552 | Msa1425210:CDS |
| GACATCTCCGGCGGCGTCGG+CGG | 0.484833 | tig0025831:+26300 | None:intergenic |
| GCAATGAGAGTACCAAATAA+GGG | 0.487130 | tig0025831:+25102 | None:intergenic |
| AAAGTCTGATATTCCTTCTC+CGG | 0.492382 | tig0025831:-26563 | Msa1425210:CDS |
| AATAAAGCCGCCGACGCCGC+CGG | 0.502814 | tig0025831:-26307 | Msa1425210:CDS |
| TTCAACTGCGGTGCGGTCGT+TGG | 0.508615 | tig0025831:+26519 | None:intergenic |
| TAAATAACGTTCACAAGGGC+TGG | 0.510267 | tig0025831:+22416 | None:intergenic |
| GATGACATCTCCGGCGGCGT+CGG | 0.513194 | tig0025831:+26297 | None:intergenic |
| ATATAGAAACTGTTCCGGAC+TGG | 0.514705 | tig0025831:+25729 | None:intergenic |
| CATACAAATATGCTTGAGAA+AGG | 0.516891 | tig0025831:+24464 | None:intergenic |
| CTGCGGTGCGGTCGTTGGAG+AGG | 0.522376 | tig0025831:+26524 | None:intergenic |
| ACGGATGCCGCCGCCGGAGA+AGG | 0.523043 | tig0025831:+26550 | None:intergenic |
| ATGAAAATAATACTAGCCAT+TGG | 0.525565 | tig0025831:-26640 | Msa1425210:CDS |
| TGGTTGGAATTGGCTACGGA+AGG | 0.537064 | tig0025831:+26423 | None:intergenic |
| GTGTTAAAAGAAAGATGGAT+TGG | 0.539044 | tig0025831:-24547 | Msa1425210:CDS |
| CCCATAATCCTTGCTACTGA+AGG | 0.542938 | tig0025831:+25766 | None:intergenic |
| GAAGAGATGCTAATTAGTCT+TGG | 0.546269 | tig0025831:-22304 | Msa1425210:three_prime_UTR |
| TGTCGTTGAGTCCGGTCTGA+AGG | 0.549615 | tig0025831:-23277 | Msa1425210:intron |
| TGTTTGGTTGGAATTGGCTA+CGG | 0.556479 | tig0025831:+26419 | None:intergenic |
| ATCAATGCAAGAAAATCGTA+TGG | 0.556779 | tig0025831:+23099 | None:intergenic |
| ATATTTACGGATGACATCTC+CGG | 0.558092 | tig0025831:+26288 | None:intergenic |
| GATTCATTACAATGGTAGTA+GGG | 0.560798 | tig0025831:-22567 | Msa1425210:exon |
| CCTGTTATTGAAGGCTCTGG+AGG | 0.564575 | tig0025831:-23075 | Msa1425210:CDS |
| TAGTTCAGAATAAATGGAAA+CGG | 0.564632 | tig0025831:+22502 | None:intergenic |
| GGAAAGGACATCAACTCCGA+TGG | 0.565742 | tig0025831:-23038 | Msa1425210:CDS |
| ACTACATACATGGCATGAGA+AGG | 0.566117 | tig0025831:+26058 | None:intergenic |
| TCAATCCGCTGAGGAAGCTA+TGG | 0.566288 | tig0025831:-26104 | Msa1425210:CDS |
| ATACTTGTTGCGATTGAAAG+TGG | 0.568576 | tig0025831:+23006 | None:intergenic |
| AGGGAAATTGTCAAGTATGA+CGG | 0.576179 | tig0025831:+26078 | None:intergenic |
| GGTTGGAATTGGCTACGGAA+GGG | 0.581923 | tig0025831:+26424 | None:intergenic |
| TAATCCTTGCTACTGAAGGA+TGG | 0.581931 | tig0025831:+25770 | None:intergenic |
| CTACATACATGGCATGAGAA+GGG | 0.587143 | tig0025831:+26059 | None:intergenic |
| AAGGTCCGCACAAGTGCGCG+TGG | 0.587579 | tig0025831:+24483 | None:intergenic |
| ACGTCGGAGAAGTGATGAGT+TGG | 0.589087 | tig0025831:+26334 | None:intergenic |
| TGATATTCCTTCTCCGGCGG+CGG | 0.590274 | tig0025831:-26557 | Msa1425210:CDS |
| CTGTCCATCCTTCAGTAGCA+AGG | 0.596760 | tig0025831:-25774 | Msa1425210:CDS |
| TTATTGGGTGAAACCCAGTC+CGG | 0.597564 | tig0025831:-25743 | Msa1425210:CDS |
| AGTGTCCACGCGCACTTGTG+CGG | 0.600150 | tig0025831:-24488 | Msa1425210:CDS |
| ATACTAGCCATTGGATCATG+TGG | 0.603366 | tig0025831:-26631 | Msa1425210:CDS |
| CAAGTTGTAATCTTCTCTAG+AGG | 0.605556 | tig0025831:-22525 | Msa1425210:three_prime_UTR |
| GCGGTCGTTGGAGAGGAAGA+CGG | 0.608562 | tig0025831:+26531 | None:intergenic |
| GAAGTGATGAGTTGGTGAGG+AGG | 0.609384 | tig0025831:+26342 | None:intergenic |
| GAAAGGACATCAACTCCGAT+GGG | 0.610241 | tig0025831:-23037 | Msa1425210:CDS |
| CATACAACCACATGATCCAA+TGG | 0.610793 | tig0025831:+26624 | None:intergenic |
| GGCGGCTTTATTAGCGACGT+CGG | 0.614790 | tig0025831:+26318 | None:intergenic |
| ACGTATAAATAACGTTCACA+AGG | 0.616485 | tig0025831:+22411 | None:intergenic |
| CTCAGCGGATTGATCAGCAA+TGG | 0.622443 | tig0025831:+26114 | None:intergenic |
| GGAACTAAGAGCTTTATCAC+TGG | 0.625155 | tig0025831:-25229 | Msa1425210:intron |
| CAGGTTGATCAATTATGCCA+AGG | 0.625843 | tig0025831:+24569 | None:intergenic |
| GTCTGATATTCCTTCTCCGG+CGG | 0.625946 | tig0025831:-26560 | Msa1425210:CDS |
| AGTACGGAATACCTTCAGAC+CGG | 0.643132 | tig0025831:+23266 | None:intergenic |
| ATTTATCCGTGTTAGAGACA+AGG | 0.644402 | tig0025831:-24219 | Msa1425210:intron |
| GGAGAAGTGATGAGTTGGTG+AGG | 0.647118 | tig0025831:+26339 | None:intergenic |
| AAAGTGGTGAAGCTTCCCAT+CGG | 0.647770 | tig0025831:+23022 | None:intergenic |
| GGCAAAATGAGTAGTCAATG+AGG | 0.649690 | tig0025831:-22352 | Msa1425210:three_prime_UTR |
| GGTGTCATAACTGATTGGAA+AGG | 0.656001 | tig0025831:-23054 | Msa1425210:CDS |
| AGATGATGATGATAATGGAG+AGG | 0.671375 | tig0025831:+26390 | None:intergenic |
| AACAGACCTTGTCTCTAACA+CGG | 0.678950 | tig0025831:+24213 | None:intergenic |
| AGGCTCTAGATTCATTACAA+TGG | 0.681171 | tig0025831:-22575 | Msa1425210:CDS |
| CGTATAAATAACGTTCACAA+GGG | 0.683635 | tig0025831:+22412 | None:intergenic |
| TGCTACTGAAGGATGGACAG+AGG | 0.693174 | tig0025831:+25777 | None:intergenic |
| ATTGCTCTGAGTCTAAGACT+GGG | 0.703906 | tig0025831:+26367 | None:intergenic |
| CATTGCTGATCAATCCGCTG+AGG | 0.709748 | tig0025831:-26113 | Msa1425210:CDS |
| TTTACGGATGACATCTCCGG+CGG | 0.710560 | tig0025831:+26291 | None:intergenic |
| TGACAACAACATTTCAACTG+CGG | 0.719870 | tig0025831:+26507 | None:intergenic |
| ACAACATTTCAACTGCGGTG+CGG | 0.727155 | tig0025831:+26512 | None:intergenic |
| GGAAACCATAGCTTCCTCAG+CGG | 0.774815 | tig0025831:+26099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATATTTTTATGTATA+AGG | + | tig0025831:25773-25792 | None:intergenic | 10.0% |
| !! | TACATAAAAATATAACAAAT+AGG | - | tig0025831:25775-25794 | Msa1425210:CDS | 10.0% |
| !!! | TTATTGTTTTTATTATTAGG+AGG | + | tig0025831:22249-22268 | None:intergenic | 15.0% |
| !!! | TATTTCTTCTGAAATATTTA+CGG | + | tig0025831:22425-22444 | None:intergenic | 15.0% |
| !!! | AAACTTTAAGTTTTTAAGTT+TGG | - | tig0025831:24088-24107 | Msa1425210:intron | 15.0% |
| !! | AACCTAGATATATATAATTT+GGG | + | tig0025831:25291-25310 | None:intergenic | 15.0% |
| !! | AAACCTAGATATATATAATT+TGG | + | tig0025831:25292-25311 | None:intergenic | 15.0% |
| !! | AGATGATTAAAACAATATTT+GGG | - | tig0025831:25520-25539 | Msa1425210:intron | 15.0% |
| !!! | ACATTTTATTCAATCTAAAA+GGG | - | tig0025831:25886-25905 | Msa1425210:intron | 15.0% |
| !!! | TTATTTAATGGATCTAAAAA+AGG | + | tig0025831:26526-26545 | None:intergenic | 15.0% |
| !! | CAGATACATTAATTATTTAA+TGG | + | tig0025831:26538-26557 | None:intergenic | 15.0% |
| !!! | TATTTTCTTATATTTGAAAC+CGG | - | tig0025831:26610-26629 | Msa1425210:CDS | 15.0% |
| !!! | ATCACCTCATTAATATTTTT+CGG | - | tig0025831:23502-23521 | Msa1425210:intron | 20.0% |
| !! | TAACGTATTACAAAGTTAAA+AGG | - | tig0025831:23708-23727 | Msa1425210:intron | 20.0% |
| !! | ATATGTGTAGCTAAAATATA+AGG | + | tig0025831:23976-23995 | None:intergenic | 20.0% |
| !! | CATATGAATTGTAAAATTCA+TGG | + | tig0025831:24379-24398 | None:intergenic | 20.0% |
| !!! | CATGAATTTTACAATTCATA+TGG | - | tig0025831:24377-24396 | Msa1425210:intron | 20.0% |
| !! | TTCAAAATCATCATTAAAAG+GGG | + | tig0025831:24737-24756 | None:intergenic | 20.0% |
| !! | GTTCAAAATCATCATTAAAA+GGG | + | tig0025831:24738-24757 | None:intergenic | 20.0% |
| !! | TGTTCAAAATCATCATTAAA+AGG | + | tig0025831:24739-24758 | None:intergenic | 20.0% |
| !! | TTCAAACCAAATAAATGATT+GGG | + | tig0025831:24881-24900 | None:intergenic | 20.0% |
| !! | TTAATACTCTATTTATGACA+GGG | + | tig0025831:25108-25127 | None:intergenic | 20.0% |
| !! | ATTAATACTCTATTTATGAC+AGG | + | tig0025831:25109-25128 | None:intergenic | 20.0% |
| !! | TAGAAATTAAAATAGTGCAT+AGG | + | tig0025831:25187-25206 | None:intergenic | 20.0% |
| !! | TTCCCAAATTATATATATCT+AGG | - | tig0025831:25286-25305 | Msa1425210:CDS | 20.0% |
| !! | CAGATGATTAAAACAATATT+TGG | - | tig0025831:25519-25538 | Msa1425210:intron | 20.0% |
| !!! | TTTTTTTTTGACAACAAAAG+TGG | - | tig0025831:25822-25841 | Msa1425210:intron | 20.0% |
| !!! | CACATTTTATTCAATCTAAA+AGG | - | tig0025831:25885-25904 | Msa1425210:intron | 20.0% |
| !! | TATACTTAGTTCAGAATAAA+TGG | + | tig0025831:26204-26223 | None:intergenic | 20.0% |
| !! | TTTATTCTGAACTAAGTATA+AGG | - | tig0025831:26204-26223 | Msa1425210:intron | 20.0% |
| ! | ATGAAAATAATACTAGCCAT+TGG | - | tig0025831:22057-22076 | Msa1425210:three_prime_UTR | 25.0% |
| ! | GCAATAGCAATAAAAAAGTT+AGG | + | tig0025831:22682-22701 | None:intergenic | 25.0% |
| ! | TTATCATATAGAAACTGTTC+CGG | + | tig0025831:22976-22995 | None:intergenic | 25.0% |
| ! | ACAAACAAGTTAATCCAAAA+AGG | - | tig0025831:23212-23231 | Msa1425210:intron | 25.0% |
| !! | ATTTCTTTTGTATCCATTTC+AGG | - | tig0025831:23568-23587 | Msa1425210:intron | 25.0% |
| !! | TTTCTTTTGTATCCATTTCA+GGG | - | tig0025831:23569-23588 | Msa1425210:intron | 25.0% |
| ! | TTCATGATATAAGTTTGCAA+AGG | + | tig0025831:24273-24292 | None:intergenic | 25.0% |
| !!! | TTTATCTACTGCTTTTAACA+TGG | - | tig0025831:24350-24369 | Msa1425210:intron | 25.0% |
| ! | TCAAAATCATCATTAAAAGG+GGG | + | tig0025831:24736-24755 | None:intergenic | 25.0% |
| ! | AAAACACAATTGACAAAAGA+TGG | - | tig0025831:24758-24777 | Msa1425210:intron | 25.0% |
| ! | AAACACAATTGACAAAAGAT+GGG | - | tig0025831:24759-24778 | Msa1425210:intron | 25.0% |
| ! | AATCGCTCAAAAAAAAAAGA+AGG | - | tig0025831:24788-24807 | Msa1425210:intron | 25.0% |
| ! | ATCGCTCAAAAAAAAAAGAA+GGG | - | tig0025831:24789-24808 | Msa1425210:intron | 25.0% |
| ! | AATATGCCCAATCATTTATT+TGG | - | tig0025831:24872-24891 | Msa1425210:intron | 25.0% |
| ! | CTTCAAACCAAATAAATGAT+TGG | + | tig0025831:24882-24901 | None:intergenic | 25.0% |
| !!! | ATCATTTATTTGGTTTGAAG+AGG | - | tig0025831:24882-24901 | Msa1425210:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | - | tig0025831:25007-25026 | Msa1425210:intron | 25.0% |
| !! | TTAAAATAGTGCATAGGTTT+TGG | + | tig0025831:25181-25200 | None:intergenic | 25.0% |
| ! | CAGGTTAAAATTCCATTATA+TGG | - | tig0025831:25349-25368 | Msa1425210:intron | 25.0% |
| ! | AAAGATTAGACAATAGAGTA+CGG | + | tig0025831:25450-25469 | None:intergenic | 25.0% |
| ! | ATTATTTGAATGTCTTCCTT+GGG | - | tig0025831:25556-25575 | Msa1425210:intron | 25.0% |
| ! | CTAAGAATGAATTAGGAATA+AGG | + | tig0025831:25750-25769 | None:intergenic | 25.0% |
| ! | TATAAGGCTAAGAATGAATT+AGG | + | tig0025831:25757-25776 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTGCCAACAAAAG+TGG | - | tig0025831:25862-25881 | Msa1425210:intron | 25.0% |
| ! | ACAAAATCTTTCATGACTTA+AGG | + | tig0025831:26004-26023 | None:intergenic | 25.0% |
| !!! | TCAGTTACTTTTACTTCATT+CGG | - | tig0025831:26023-26042 | Msa1425210:intron | 25.0% |
| ! | TAGTTCAGAATAAATGGAAA+CGG | + | tig0025831:26198-26217 | None:intergenic | 25.0% |
| ! | ATTTATCACAACAGTTCAAA+TGG | - | tig0025831:26252-26271 | Msa1425210:CDS | 25.0% |
| !!! | TCTTTTCTTATATTTGAGAC+CGG | + | tig0025831:26501-26520 | None:intergenic | 25.0% |
| ! | CTACTCAATGAATCTAAAAA+AGG | - | tig0025831:26585-26604 | Msa1425210:CDS | 25.0% |
| ! | TCAATTTGTTTGGTTGGAAT+TGG | + | tig0025831:22287-22306 | None:intergenic | 30.0% |
| AGAGTAACTAACTACATACA+TGG | + | tig0025831:22652-22671 | None:intergenic | 30.0% | |
| AAATGTGACCACCTTTATAT+AGG | - | tig0025831:22850-22869 | Msa1425210:intron | 30.0% | |
| AATGTGACCACCTTTATATA+GGG | - | tig0025831:22851-22870 | Msa1425210:intron | 30.0% | |
| TAAGCATAAGCTGTATTCAT+AGG | - | tig0025831:23146-23165 | Msa1425210:intron | 30.0% | |
| ! | TATTCATAGGTTTTCTCAGA+CGG | - | tig0025831:23159-23178 | Msa1425210:intron | 30.0% |
| !! | TTCAAGTTTAAGAGCCTTTT+TGG | + | tig0025831:23229-23248 | None:intergenic | 30.0% |
| TTGGAATTGGAATTGGAATT+TGG | - | tig0025831:23281-23300 | Msa1425210:CDS | 30.0% | |
| ! | AAAGTACAGAATCTAGAATC+TGG | + | tig0025831:23327-23346 | None:intergenic | 30.0% |
| CACCAAATAAATTGCAGTTA+CGG | - | tig0025831:23378-23397 | Msa1425210:intron | 30.0% | |
| CTGACCGAAAAATATTAATG+AGG | + | tig0025831:23509-23528 | None:intergenic | 30.0% | |
| ATGTCTTTGTCAAAACTTCA+TGG | + | tig0025831:23781-23800 | None:intergenic | 30.0% | |
| TTTGACAAAGACATAGAAAC+TGG | - | tig0025831:23787-23806 | Msa1425210:intron | 30.0% | |
| TTTATGTGTCAATTTCAGTG+TGG | + | tig0025831:23816-23835 | None:intergenic | 30.0% | |
| CGCATACAAACATATATATG+TGG | - | tig0025831:23948-23967 | Msa1425210:intron | 30.0% | |
| CAGTTTGTCTACAATGTAAT+TGG | + | tig0025831:24002-24021 | None:intergenic | 30.0% | |
| ATTACATTGTAGACAAACTG+AGG | - | tig0025831:24002-24021 | Msa1425210:intron | 30.0% | |
| ! | TTTCCTTTTTATCAGATCCT+TGG | - | tig0025831:24111-24130 | Msa1425210:intron | 30.0% |
| AACCTGTGTTAAAAGAAAGA+TGG | - | tig0025831:24145-24164 | Msa1425210:intron | 30.0% | |
| ! | ATCCATCTTTCTTTTAACAC+AGG | + | tig0025831:24150-24169 | None:intergenic | 30.0% |
| GTGTTAAAAGAAAGATGGAT+TGG | - | tig0025831:24150-24169 | Msa1425210:intron | 30.0% | |
| CATACAAATATGCTTGAGAA+AGG | + | tig0025831:24236-24255 | None:intergenic | 30.0% | |
| TATCATGAACAATTCTTGAG+TGG | - | tig0025831:24284-24303 | Msa1425210:intron | 30.0% | |
| !!! | ATTTCATTTTTTCTCTACCC+AGG | - | tig0025831:24411-24430 | Msa1425210:intron | 30.0% |
| TTTCTGCACTGTTAACATAA+AGG | - | tig0025831:24514-24533 | Msa1425210:CDS | 30.0% | |
| CGATTTCAAAATATGGGTAT+GGG | + | tig0025831:24599-24618 | None:intergenic | 30.0% | |
| !!! | CCATACCCATATTTTGAAAT+CGG | - | tig0025831:24597-24616 | Msa1425210:intron | 30.0% |
| !!! | CATACCCATATTTTGAAATC+GGG | - | tig0025831:24598-24617 | Msa1425210:intron | 30.0% |
| !!! | ATACCCATATTTTGAAATCG+GGG | - | tig0025831:24599-24618 | Msa1425210:intron | 30.0% |
| TTTCCCCGATTTCAAAATAT+GGG | + | tig0025831:24605-24624 | None:intergenic | 30.0% | |
| ! | TTTTCCCCGATTTCAAAATA+TGG | + | tig0025831:24606-24625 | None:intergenic | 30.0% |
| CAAAATCATCATTAAAAGGG+GGG | + | tig0025831:24735-24754 | None:intergenic | 30.0% | |
| AACACAATTGACAAAAGATG+GGG | - | tig0025831:24760-24779 | Msa1425210:intron | 30.0% | |
| TCGCTCAAAAAAAAAAGAAG+GGG | - | tig0025831:24790-24809 | Msa1425210:intron | 30.0% | |
| TATAGCAACACTATAGCATA+AGG | - | tig0025831:24942-24961 | Msa1425210:intron | 30.0% | |
| ATAGCAACACTATAGCATAA+GGG | - | tig0025831:24943-24962 | Msa1425210:intron | 30.0% | |
| TAGCAATCACAACCATATAA+TGG | + | tig0025831:25364-25383 | None:intergenic | 30.0% | |
| GTACTCTATTGTCTAATCTT+TGG | - | tig0025831:25449-25468 | Msa1425210:intron | 30.0% | |
| ATGACTCACAAGATTCTTAA+AGG | + | tig0025831:25486-25505 | None:intergenic | 30.0% | |
| CATTATTTGAATGTCTTCCT+TGG | - | tig0025831:25555-25574 | Msa1425210:intron | 30.0% | |
| ATCAATGCAAGAAAATCGTA+TGG | + | tig0025831:25601-25620 | None:intergenic | 30.0% | |
| AGGATGAAAAGTAAGAAAAG+TGG | - | tig0025831:25795-25814 | Msa1425210:CDS | 30.0% | |
| !!! | ATAAAATGTGCCACTTTTGT+TGG | + | tig0025831:25875-25894 | None:intergenic | 30.0% |
| !! | ACAAGACAACTTGTTTTCTT+TGG | + | tig0025831:25918-25937 | None:intergenic | 30.0% |
| AAAGAAATTAAGTCAGCGTT+TGG | + | tig0025831:25963-25982 | None:intergenic | 30.0% | |
| CTGACTTAATTTCTTTCTCT+TGG | - | tig0025831:25967-25986 | Msa1425210:intron | 30.0% | |
| AAATCTTTCATGACTTAAGG+TGG | + | tig0025831:26001-26020 | None:intergenic | 30.0% | |
| ACAACATTAAAACCTGTCAT+AGG | + | tig0025831:26073-26092 | None:intergenic | 30.0% | |
| !! | TATGACAGGTTTTAATGTTG+TGG | - | tig0025831:26072-26091 | Msa1425210:CDS | 30.0% |
| AGATTCATTACAATGGTAGT+AGG | - | tig0025831:26129-26148 | Msa1425210:intron | 30.0% | |
| GATTCATTACAATGGTAGTA+GGG | - | tig0025831:26130-26149 | Msa1425210:intron | 30.0% | |
| GATAAATAAACGCCGAATAA+TGG | + | tig0025831:26239-26258 | None:intergenic | 30.0% | |
| CGTATAAATAACGTTCACAA+GGG | + | tig0025831:26288-26307 | None:intergenic | 30.0% | |
| ACGTATAAATAACGTTCACA+AGG | + | tig0025831:26289-26308 | None:intergenic | 30.0% | |
| ! | AAAGATAGATGTACCTTTTG+AGG | - | tig0025831:26324-26343 | Msa1425210:CDS | 30.0% |
| CATTGAGTAGTTAATGTATG+TGG | + | tig0025831:26575-26594 | None:intergenic | 30.0% | |
| ! | TTTCTTATATTTGAAACCGG+AGG | - | tig0025831:26613-26632 | Msa1425210:CDS | 30.0% |
| ! | TTCTTATATTTGAAACCGGA+GGG | - | tig0025831:26614-26633 | Msa1425210:CDS | 30.0% |
| AAAATTTATACTACTCCCTC+CGG | + | tig0025831:26632-26651 | None:intergenic | 30.0% | |
| AAAGTCTGATATTCCTTCTC+CGG | - | tig0025831:22134-22153 | Msa1425210:intron | 35.0% | |
| TGACAACAACATTTCAACTG+CGG | + | tig0025831:22193-22212 | None:intergenic | 35.0% | |
| ! | AATGGAGAGGTCAATTTGTT+TGG | + | tig0025831:22297-22316 | None:intergenic | 35.0% |
| !! | AGATGATGATGATAATGGAG+AGG | + | tig0025831:22310-22329 | None:intergenic | 35.0% |
| ATATTTACGGATGACATCTC+CGG | + | tig0025831:22412-22431 | None:intergenic | 35.0% | |
| AGGGAAATTGTCAAGTATGA+CGG | + | tig0025831:22622-22641 | None:intergenic | 35.0% | |
| GATGCTATTCCTTTATCATC+TGG | - | tig0025831:22753-22772 | Msa1425210:intron | 35.0% | |
| TGGTTTACACCAGATGATAA+AGG | + | tig0025831:22765-22784 | None:intergenic | 35.0% | |
| ACACACTACACTACTTTGAT+TGG | + | tig0025831:22785-22804 | None:intergenic | 35.0% | |
| AAAGTAGTGTAGTGTGTACA+AGG | - | tig0025831:22788-22807 | Msa1425210:intron | 35.0% | |
| ATGTGACCACCTTTATATAG+GGG | - | tig0025831:22852-22871 | Msa1425210:intron | 35.0% | |
| ! | TAGCAAGGATTATGGGTTAT+TGG | - | tig0025831:22938-22957 | Msa1425210:intron | 35.0% |
| ! | AGCAAGGATTATGGGTTATT+GGG | - | tig0025831:22939-22958 | Msa1425210:intron | 35.0% |
| ATCAACAAAATGCAGAAGAC+AGG | + | tig0025831:23255-23274 | None:intergenic | 35.0% | |
| ! | TCTTCTGCATTTTGTTGATG+TGG | - | tig0025831:23256-23275 | Msa1425210:intron | 35.0% |
| ! | GCATTTTGTTGATGTGGATT+TGG | - | tig0025831:23262-23281 | Msa1425210:intron | 35.0% |
| ! | TGTTGATGTGGATTTGGAAT+TGG | - | tig0025831:23268-23287 | Msa1425210:intron | 35.0% |
| ! | TGTGGATTTGGAATTGGAAT+TGG | - | tig0025831:23274-23293 | Msa1425210:intron | 35.0% |
| !! | TTTAAATTACTGAAGCGCTG+AGG | - | tig0025831:23344-23363 | Msa1425210:CDS | 35.0% |
| CTCCGTAACTGCAATTTATT+TGG | + | tig0025831:23383-23402 | None:intergenic | 35.0% | |
| !! | AAGACAGTGCTGATTATGTT+TGG | - | tig0025831:23427-23446 | Msa1425210:intron | 35.0% |
| !! | AGACAGTGCTGATTATGTTT+GGG | - | tig0025831:23428-23447 | Msa1425210:intron | 35.0% |
| TGGGTATTAGATCCTATTGA+TGG | - | tig0025831:23447-23466 | Msa1425210:intron | 35.0% | |
| AAGCTCTTAGTTCCATCAAT+AGG | + | tig0025831:23462-23481 | None:intergenic | 35.0% | |
| AAATAAGGGTTTCCCTGAAA+TGG | + | tig0025831:23584-23603 | None:intergenic | 35.0% | |
| ATTTCAGGGAAACCCTTATT+TGG | - | tig0025831:23583-23602 | Msa1425210:intron | 35.0% | |
| !! | GCAATGAGAGTACCAAATAA+GGG | + | tig0025831:23598-23617 | None:intergenic | 35.0% |
| !! | AGCAATGAGAGTACCAAATA+AGG | + | tig0025831:23599-23618 | None:intergenic | 35.0% |
| ! | CTCATTGCTCTTTTGCAAAA+TGG | - | tig0025831:23610-23629 | Msa1425210:intron | 35.0% |
| GAGATGAGATAGTTACTTAC+TGG | + | tig0025831:23640-23659 | None:intergenic | 35.0% | |
| ATTCTACATACGCATTCAAG+CGG | + | tig0025831:23666-23685 | None:intergenic | 35.0% | |
| ATACGTTAAGAAAAGCGACT+AGG | + | tig0025831:23696-23715 | None:intergenic | 35.0% | |
| ATGCCAAGGATCTGATAAAA+AGG | + | tig0025831:24117-24136 | None:intergenic | 35.0% | |
| !! | GAAAGATGGATTGGAATAAC+TGG | - | tig0025831:24159-24178 | Msa1425210:intron | 35.0% |
| GGAAAGAGAACTACACTAAA+TGG | - | tig0025831:24180-24199 | Msa1425210:intron | 35.0% | |
| AACAATTCTTGAGTGGAAGA+GGG | - | tig0025831:24291-24310 | Msa1425210:intron | 35.0% | |
| ! | AACAAGGATGTTTTCGAAAC+TGG | - | tig0025831:24316-24335 | Msa1425210:intron | 35.0% |
| CATCTCCACTAAAAAGATGT+GGG | + | tig0025831:24448-24467 | None:intergenic | 35.0% | |
| ATTTATCCGTGTTAGAGACA+AGG | - | tig0025831:24478-24497 | Msa1425210:CDS | 35.0% | |
| TGTTAACATAAAGGCAGTAC+TGG | - | tig0025831:24523-24542 | Msa1425210:CDS | 35.0% | |
| TTCAAAATATGGGTATGGGA+CGG | + | tig0025831:24595-24614 | None:intergenic | 35.0% | |
| CCGATTTCAAAATATGGGTA+TGG | + | tig0025831:24600-24619 | None:intergenic | 35.0% | |
| AAAATCCGTCAAATTGGGTT+TGG | - | tig0025831:24648-24667 | Msa1425210:intron | 35.0% | |
| TCGCACAATTAGCAAAAGAT+AGG | - | tig0025831:24820-24839 | Msa1425210:intron | 35.0% | |
| CGCACAATTAGCAAAAGATA+GGG | - | tig0025831:24821-24840 | Msa1425210:intron | 35.0% | |
| GCACAATTAGCAAAAGATAG+GGG | - | tig0025831:24822-24841 | Msa1425210:intron | 35.0% | |
| CACAATTAGCAAAAGATAGG+GGG | - | tig0025831:24823-24842 | Msa1425210:intron | 35.0% | |
| ACAATTAGCAAAAGATAGGG+GGG | - | tig0025831:24824-24843 | Msa1425210:intron | 35.0% | |
| ! | GATTGGGCATATTTTATCCT+TGG | + | tig0025831:24865-24884 | None:intergenic | 35.0% |
| AATCACTTAACCAGTAAAGG+TGG | + | tig0025831:25157-25176 | None:intergenic | 35.0% | |
| GGAAATCACTTAACCAGTAA+AGG | + | tig0025831:25160-25179 | None:intergenic | 35.0% | |
| TTCTATCATTTGCACTCTTC+AGG | - | tig0025831:25330-25349 | Msa1425210:intron | 35.0% | |
| ! | GCATTGATACCTGTTATTGA+AGG | - | tig0025831:25613-25632 | Msa1425210:intron | 35.0% |
| ! | ATACTTGTTGCGATTGAAAG+TGG | + | tig0025831:25694-25713 | None:intergenic | 35.0% |
| CTTAATGAATTGCCTATGAC+AGG | - | tig0025831:26058-26077 | Msa1425210:intron | 35.0% | |
| TGACAAACAGATTCATCAAC+AGG | - | tig0025831:26102-26121 | Msa1425210:CDS | 35.0% | |
| !! | AGGCTCTAGATTCATTACAA+TGG | - | tig0025831:26122-26141 | Msa1425210:CDS | 35.0% |
| CAAGTTGTAATCTTCTCTAG+AGG | - | tig0025831:26172-26191 | Msa1425210:intron | 35.0% | |
| AGGCTCATGATTCCATTATT+CGG | - | tig0025831:26224-26243 | Msa1425210:intron | 35.0% | |
| ! | ACTACTCATTTTGCCTCAAA+AGG | + | tig0025831:26340-26359 | None:intergenic | 35.0% |
| ! | GAAGAGATGCTAATTAGTCT+TGG | - | tig0025831:26393-26412 | Msa1425210:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | tig0025831:26497-26516 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | tig0025831:26498-26517 | None:intergenic | 35.0% |
| ATACTAGCCATTGGATCATG+TGG | - | tig0025831:22066-22085 | Msa1425210:intron | 40.0% | |
| CATACAACCACATGATCCAA+TGG | + | tig0025831:22076-22095 | None:intergenic | 40.0% | |
| TGTTTGGTTGGAATTGGCTA+CGG | + | tig0025831:22281-22300 | None:intergenic | 40.0% | |
| ! | GAGAGGTCAATTTGTTTGGT+TGG | + | tig0025831:22293-22312 | None:intergenic | 40.0% |
| ! | CTGGGAGATGATGATGATAA+TGG | + | tig0025831:22315-22334 | None:intergenic | 40.0% |
| ! | ATTGCTCTGAGTCTAAGACT+GGG | + | tig0025831:22333-22352 | None:intergenic | 40.0% |
| CTACATACATGGCATGAGAA+GGG | + | tig0025831:22641-22660 | None:intergenic | 40.0% | |
| ACTACATACATGGCATGAGA+AGG | + | tig0025831:22642-22661 | None:intergenic | 40.0% | |
| TTCCATCAAGAAGAGTAGCT+CGG | + | tig0025831:22820-22839 | None:intergenic | 40.0% | |
| TAATCCTTGCTACTGAAGGA+TGG | + | tig0025831:22930-22949 | None:intergenic | 40.0% | |
| TCCTTCAGTAGCAAGGATTA+TGG | - | tig0025831:22930-22949 | Msa1425210:intron | 40.0% | |
| CCTTCAGTAGCAAGGATTAT+GGG | - | tig0025831:22931-22950 | Msa1425210:intron | 40.0% | |
| TATAGAAACTGTTCCGGACT+GGG | + | tig0025831:22970-22989 | None:intergenic | 40.0% | |
| ATATAGAAACTGTTCCGGAC+TGG | + | tig0025831:22971-22990 | None:intergenic | 40.0% | |
| TGCAGTTACGGAGAAGAAAA+AGG | - | tig0025831:23390-23409 | Msa1425210:intron | 40.0% | |
| GTTACGGAGAAGAAAAAGGA+TGG | - | tig0025831:23394-23413 | Msa1425210:intron | 40.0% | |
| ! | GGAACTAAGAGCTTTATCAC+TGG | - | tig0025831:23468-23487 | Msa1425210:intron | 40.0% |
| ACTTCATGGTGTGAATCAGT+TGG | + | tig0025831:23767-23786 | None:intergenic | 40.0% | |
| CAACGTGTGTCAGTATACAT+GGG | + | tig0025831:23883-23902 | None:intergenic | 40.0% | |
| TCAACGTGTGTCAGTATACA+TGG | + | tig0025831:23884-23903 | None:intergenic | 40.0% | |
| !! | CAGGTTGATCAATTATGCCA+AGG | + | tig0025831:24131-24150 | None:intergenic | 40.0% |
| GAACAATTCTTGAGTGGAAG+AGG | - | tig0025831:24290-24309 | Msa1425210:intron | 40.0% | |
| ! | ACAAGCCCACATCTTTTTAG+TGG | - | tig0025831:24440-24459 | Msa1425210:intron | 40.0% |
| GCATCTCCACTAAAAAGATG+TGG | + | tig0025831:24449-24468 | None:intergenic | 40.0% | |
| ! | TTTTAGTGGAGATGCAGAAG+AGG | - | tig0025831:24454-24473 | Msa1425210:intron | 40.0% |
| AACAGACCTTGTCTCTAACA+CGG | + | tig0025831:24487-24506 | None:intergenic | 40.0% | |
| ! | AACATAAAGGCAGTACTGGA+CGG | - | tig0025831:24527-24546 | Msa1425210:CDS | 40.0% |
| TCAAAATATGGGTATGGGAC+GGG | + | tig0025831:24594-24613 | None:intergenic | 40.0% | |
| CAGGGAAAATCCGTCAAATT+GGG | - | tig0025831:24643-24662 | Msa1425210:intron | 40.0% | |
| ATCATTAAAAGGGGGGAAAG+GGG | + | tig0025831:24728-24747 | None:intergenic | 40.0% | |
| CATCATTAAAAGGGGGGAAA+GGG | + | tig0025831:24729-24748 | None:intergenic | 40.0% | |
| TCATCATTAAAAGGGGGGAA+AGG | + | tig0025831:24730-24749 | None:intergenic | 40.0% | |
| CAATTAGCAAAAGATAGGGG+GGG | - | tig0025831:24825-24844 | Msa1425210:intron | 40.0% | |
| GGGAAAATGCAATTAAGCCA+AGG | - | tig0025831:24845-24864 | Msa1425210:intron | 40.0% | |
| TTGTACTAAATTGCGCACAG+TGG | + | tig0025831:24992-25011 | None:intergenic | 40.0% | |
| !! | ATTACTGACTCCACCTTTAC+TGG | - | tig0025831:25144-25163 | Msa1425210:intron | 40.0% |
| !!! | TCTCTTGTCTTCTGGTTTTG+TGG | - | tig0025831:25393-25412 | Msa1425210:intron | 40.0% |
| TGAAGTACAAAGTTCACCCA+AGG | + | tig0025831:25575-25594 | None:intergenic | 40.0% | |
| ATACCTGTTATTGAAGGCTC+TGG | - | tig0025831:25619-25638 | Msa1425210:intron | 40.0% | |
| ! | GGTGTCATAACTGATTGGAA+AGG | - | tig0025831:25643-25662 | Msa1425210:intron | 40.0% |
| TTAAGTCAGCGTTTGGCAAT+CGG | + | tig0025831:25956-25975 | None:intergenic | 40.0% | |
| !! | GACAGGTTTTAATGTTGTGG+CGG | - | tig0025831:26075-26094 | Msa1425210:CDS | 40.0% |
| TAAATAACGTTCACAAGGGC+TGG | + | tig0025831:26284-26303 | None:intergenic | 40.0% | |
| GGCAAAATGAGTAGTCAATG+AGG | - | tig0025831:26345-26364 | Msa1425210:CDS | 40.0% | |
| TAGTACAATCATACTCCCTC+CGG | - | tig0025831:26479-26498 | Msa1425210:CDS | 40.0% | |
| ACAACATTTCAACTGCGGTG+CGG | + | tig0025831:22188-22207 | None:intergenic | 45.0% | |
| ! | CATTGCTCTGAGTCTAAGAC+TGG | + | tig0025831:22334-22353 | None:intergenic | 45.0% |
| GATTGATCAGCAATGGTGAC+AGG | + | tig0025831:22579-22598 | None:intergenic | 45.0% | |
| TTCCGAGCTACTCTTCTTGA+TGG | - | tig0025831:22815-22834 | Msa1425210:intron | 45.0% | |
| ATGGCTCCCCTATATAAAGG+TGG | + | tig0025831:22861-22880 | None:intergenic | 45.0% | |
| AGCATGGCTCCCCTATATAA+AGG | + | tig0025831:22864-22883 | None:intergenic | 45.0% | |
| CACAGGAGTCAATTACAGCA+TGG | + | tig0025831:22880-22899 | None:intergenic | 45.0% | |
| CCCATAATCCTTGCTACTGA+AGG | + | tig0025831:22934-22953 | None:intergenic | 45.0% | |
| TTATTGGGTGAAACCCAGTC+CGG | - | tig0025831:22954-22973 | Msa1425210:intron | 45.0% | |
| ! | GAAGTATCTTGAACAGCTCG+CGG | - | tig0025831:23115-23134 | Msa1425210:intron | 45.0% |
| ACGGAGAAGAAAAAGGATGG+AGG | - | tig0025831:23397-23416 | Msa1425210:intron | 45.0% | |
| !! | AACAGTTAGCACTGACACCT+CGG | + | tig0025831:23927-23946 | None:intergenic | 45.0% |
| TGAGTGGAAGAGGGATAACA+AGG | - | tig0025831:24300-24319 | Msa1425210:intron | 45.0% | |
| ! | ACATAAAGGCAGTACTGGAC+GGG | - | tig0025831:24528-24547 | Msa1425210:CDS | 45.0% |
| ! | GGATTTTCCCTGCTTTGACT+GGG | + | tig0025831:24635-24654 | None:intergenic | 45.0% |
| GCAGGGAAAATCCGTCAAAT+TGG | - | tig0025831:24642-24661 | Msa1425210:intron | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | + | tig0025831:24656-24675 | None:intergenic | 45.0% | |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | - | tig0025831:24653-24672 | Msa1425210:intron | 45.0% |
| ! | CGTCAAATTGGGTTTGGTTC+GGG | - | tig0025831:24654-24673 | Msa1425210:intron | 45.0% |
| GCAACAAACATCATACCCGT+GGG | + | tig0025831:24686-24705 | None:intergenic | 45.0% | |
| CAGTTTACAGTGCTGTGAAC+TGG | - | tig0025831:25214-25233 | Msa1425210:intron | 45.0% | |
| ! | GCTGTGAACTGGTCTATGTA+TGG | - | tig0025831:25225-25244 | Msa1425210:intron | 45.0% |
| GCATATGCTCTCTTGTCTTC+TGG | - | tig0025831:25385-25404 | Msa1425210:intron | 45.0% | |
| AGTACGGAATACCTTCAGAC+CGG | + | tig0025831:25434-25453 | None:intergenic | 45.0% | |
| !! | CTGGAGGTGTCATAACTGAT+TGG | - | tig0025831:25638-25657 | Msa1425210:intron | 45.0% |
| GAAAGGACATCAACTCCGAT+GGG | - | tig0025831:25660-25679 | Msa1425210:intron | 45.0% | |
| AAAGTGGTGAAGCTTCCCAT+CGG | + | tig0025831:25678-25697 | None:intergenic | 45.0% | |
| CGTTTGGCAATCGGATGAAA+TGG | + | tig0025831:25947-25966 | None:intergenic | 45.0% | |
| !!! | TTATTATTGTTTTTATTATT+AGG | + | tig0025831:22252-22271 | None:intergenic | 5.0% |
| GTCTGATATTCCTTCTCCGG+CGG | - | tig0025831:22137-22156 | Msa1425210:intron | 50.0% | |
| GGTTGGAATTGGCTACGGAA+GGG | + | tig0025831:22276-22295 | None:intergenic | 50.0% | |
| TGGTTGGAATTGGCTACGGA+AGG | + | tig0025831:22277-22296 | None:intergenic | 50.0% | |
| !! | GAAGTGATGAGTTGGTGAGG+AGG | + | tig0025831:22358-22377 | None:intergenic | 50.0% |
| !! | GGAGAAGTGATGAGTTGGTG+AGG | + | tig0025831:22361-22380 | None:intergenic | 50.0% |
| ACGTCGGAGAAGTGATGAGT+TGG | + | tig0025831:22366-22385 | None:intergenic | 50.0% | |
| TTTACGGATGACATCTCCGG+CGG | + | tig0025831:22409-22428 | None:intergenic | 50.0% | |
| !! | CTCAGCGGATTGATCAGCAA+TGG | + | tig0025831:22586-22605 | None:intergenic | 50.0% |
| CATTGCTGATCAATCCGCTG+AGG | - | tig0025831:22584-22603 | Msa1425210:CDS | 50.0% | |
| TCAATCCGCTGAGGAAGCTA+TGG | - | tig0025831:22593-22612 | Msa1425210:CDS | 50.0% | |
| GGAAACCATAGCTTCCTCAG+CGG | + | tig0025831:22601-22620 | None:intergenic | 50.0% | |
| AAGGATGGACAGAGGACTTC+TGG | + | tig0025831:22915-22934 | None:intergenic | 50.0% | |
| TGCTACTGAAGGATGGACAG+AGG | + | tig0025831:22923-22942 | None:intergenic | 50.0% | |
| CTGTCCATCCTTCAGTAGCA+AGG | - | tig0025831:22923-22942 | Msa1425210:intron | 50.0% | |
| !! | AATTACTGAAGCGCTGAGGC+TGG | - | tig0025831:23348-23367 | Msa1425210:CDS | 50.0% |
| !! | TTAGCACTGACACCTCGGAT+TGG | + | tig0025831:23922-23941 | None:intergenic | 50.0% |
| TGTGGGCTTGTAGTGTACCT+GGG | + | tig0025831:24431-24450 | None:intergenic | 50.0% | |
| ATGTGGGCTTGTAGTGTACC+TGG | + | tig0025831:24432-24451 | None:intergenic | 50.0% | |
| ! | TACTGGACGGGTTTGGGTAT+GGG | - | tig0025831:24540-24559 | Msa1425210:CDS | 50.0% |
| TATGGGTATGGGACGGGTAA+CGG | + | tig0025831:24588-24607 | None:intergenic | 50.0% | |
| AACCCAAACCCAGTCAAAGC+AGG | - | tig0025831:24624-24643 | Msa1425210:intron | 50.0% | |
| ACCCAAACCCAGTCAAAGCA+GGG | - | tig0025831:24625-24644 | Msa1425210:intron | 50.0% | |
| TCCCTGCTTTGACTGGGTTT+GGG | + | tig0025831:24629-24648 | None:intergenic | 50.0% | |
| TTCCCTGCTTTGACTGGGTT+TGG | + | tig0025831:24630-24649 | None:intergenic | 50.0% | |
| ! | CGGATTTTCCCTGCTTTGAC+TGG | + | tig0025831:24636-24655 | None:intergenic | 50.0% |
| !! | AAATTGGGTTTGGTTCGGGC+TGG | - | tig0025831:24658-24677 | Msa1425210:intron | 50.0% |
| GGCAACAAACATCATACCCG+TGG | + | tig0025831:24687-24706 | None:intergenic | 50.0% | |
| GAAAGGGGACAAAAGATGGG+GGG | + | tig0025831:24713-24732 | None:intergenic | 50.0% | |
| GGAAAGGGGACAAAAGATGG+GGG | + | tig0025831:24714-24733 | None:intergenic | 50.0% | |
| GGGAAAGGGGACAAAAGATG+GGG | + | tig0025831:24715-24734 | None:intergenic | 50.0% | |
| GGGGAAAGGGGACAAAAGAT+GGG | + | tig0025831:24716-24735 | None:intergenic | 50.0% | |
| ! | GAACAAACCGCCTTTTCCCT+CGG | - | tig0025831:25068-25087 | Msa1425210:intron | 50.0% |
| ! | AACAAACCGCCTTTTCCCTC+GGG | - | tig0025831:25069-25088 | Msa1425210:intron | 50.0% |
| GTGGATCTTGTCGTTGAGTC+CGG | - | tig0025831:25412-25431 | Msa1425210:intron | 50.0% | |
| CCTCCAGAGCCTTCAATAAC+AGG | + | tig0025831:25625-25644 | None:intergenic | 50.0% | |
| ! | CCTGTTATTGAAGGCTCTGG+AGG | - | tig0025831:25622-25641 | Msa1425210:intron | 50.0% |
| GGAAAGGACATCAACTCCGA+TGG | - | tig0025831:25659-25678 | Msa1425210:intron | 50.0% | |
| !! | GGTTTTAATGTTGTGGCGGC+TGG | - | tig0025831:26079-26098 | Msa1425210:CDS | 50.0% |
| TGATATTCCTTCTCCGGCGG+CGG | - | tig0025831:22140-22159 | Msa1425210:intron | 55.0% | |
| !! | GGCGGCTTTATTAGCGACGT+CGG | + | tig0025831:22382-22401 | None:intergenic | 55.0% |
| TGCGATTCACTCACTCACGC+AGG | - | tig0025831:22552-22571 | Msa1425210:three_prime_UTR | 55.0% | |
| CTGCACATACCTCCAATCCG+AGG | - | tig0025831:23907-23926 | Msa1425210:intron | 55.0% | |
| ! | AAGGCAGTACTGGACGGGTT+TGG | - | tig0025831:24533-24552 | Msa1425210:CDS | 55.0% |
| ! | AGGCAGTACTGGACGGGTTT+GGG | - | tig0025831:24534-24553 | Msa1425210:CDS | 55.0% |
| ! | GTACTGGACGGGTTTGGGTA+TGG | - | tig0025831:24539-24558 | Msa1425210:CDS | 55.0% |
| ! | GACGGGTTTGGGTATGGGTT+CGG | - | tig0025831:24545-24564 | Msa1425210:CDS | 55.0% |
| ACGGGTTTGGGTATGGGTTC+GGG | - | tig0025831:24546-24565 | Msa1425210:CDS | 55.0% | |
| TTTGGGTATGGGTTCGGGGT+GGG | - | tig0025831:24551-24570 | Msa1425210:CDS | 55.0% | |
| ATGGGTATGGGACGGGTAAC+GGG | + | tig0025831:24587-24606 | None:intergenic | 55.0% | |
| GGGGGAAAGGGGACAAAAGA+TGG | + | tig0025831:24717-24736 | None:intergenic | 55.0% | |
| GCTGCTATAGCACTGTTGCG+TGG | - | tig0025831:25037-25056 | Msa1425210:intron | 55.0% | |
| GCTATAGCACTGTTGCGTGG+CGG | - | tig0025831:25040-25059 | Msa1425210:intron | 55.0% | |
| TGTCGTTGAGTCCGGTCTGA+AGG | - | tig0025831:25420-25439 | Msa1425210:intron | 55.0% | |
| GCGGTCGTTGGAGAGGAAGA+CGG | + | tig0025831:22169-22188 | None:intergenic | 60.0% | |
| TTCAACTGCGGTGCGGTCGT+TGG | + | tig0025831:22181-22200 | None:intergenic | 60.0% | |
| ! | GCACTGACACCTCGGATTGG+AGG | + | tig0025831:23919-23938 | None:intergenic | 60.0% |
| AGTGTCCACGCGCACTTGTG+CGG | - | tig0025831:24209-24228 | Msa1425210:intron | 60.0% | |
| CGGGTTTGGGTATGGGTTCG+GGG | - | tig0025831:24547-24566 | Msa1425210:CDS | 60.0% | |
| GTTTGGGTATGGGTTCGGGG+TGG | - | tig0025831:24550-24569 | Msa1425210:CDS | 60.0% | |
| !! | GGGACGGGTAACGGGGATAT+AGG | + | tig0025831:24579-24598 | None:intergenic | 60.0% |
| TGGGTATGGGACGGGTAACG+GGG | + | tig0025831:24586-24605 | None:intergenic | 60.0% | |
| !! | TTGGTTCGGGCTGGTACCCA+CGG | - | tig0025831:24667-24686 | Msa1425210:intron | 60.0% |
| GGGACAAAAGATGGGGGGCA+TGG | + | tig0025831:24708-24727 | None:intergenic | 60.0% | |
| AATAAAGCCGCCGACGCCGC+CGG | - | tig0025831:22390-22409 | Msa1425210:three_prime_UTR | 65.0% | |
| GATGACATCTCCGGCGGCGT+CGG | + | tig0025831:22403-22422 | None:intergenic | 65.0% | |
| TCTGGTGCGCTCGACTGCAC+AGG | + | tig0025831:22897-22916 | None:intergenic | 65.0% | |
| AAGGTCCGCACAAGTGCGCG+TGG | + | tig0025831:24217-24236 | None:intergenic | 65.0% | |
| !! | TGGTTCGGGCTGGTACCCAC+GGG | - | tig0025831:24668-24687 | Msa1425210:intron | 65.0% |
| TCGCAGCCCGAGGGAAAAGG+CGG | + | tig0025831:25078-25097 | None:intergenic | 65.0% | |
| CAGTCGCAGCCCGAGGGAAA+AGG | + | tig0025831:25081-25100 | None:intergenic | 65.0% | |
| GGTTGTCAGTCGCAGCCCGA+GGG | + | tig0025831:25087-25106 | None:intergenic | 65.0% | |
| AGGAAGACGGATGCCGCCGC+CGG | + | tig0025831:22156-22175 | None:intergenic | 70.0% | |
| CTGCGGTGCGGTCGTTGGAG+AGG | + | tig0025831:22176-22195 | None:intergenic | 70.0% | |
| GGGTTGTCAGTCGCAGCCCG+AGG | + | tig0025831:25088-25107 | None:intergenic | 70.0% | |
| ACGGATGCCGCCGCCGGAGA+AGG | + | tig0025831:22150-22169 | None:intergenic | 75.0% | |
| ! | GACATCTCCGGCGGCGTCGG+CGG | + | tig0025831:22400-22419 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025831 | gene | 22057 | 26662 | 22057 | ID=Msa1425210;Name=Msa1425210 |
| tig0025831 | mRNA | 22057 | 26662 | 22057 | ID=Msa1425210-mRNA-1;Parent=Msa1425210;Name=Msa1425210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.81|0.90|0.9|0.81|11|369|398 |
| tig0025831 | exon | 22057 | 22084 | 22057 | ID=Msa1425210-mRNA-1:exon:4227;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 22231 | 22639 | 22231 | ID=Msa1425210-mRNA-1:exon:4226;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 23010 | 23121 | 23010 | ID=Msa1425210-mRNA-1:exon:4225;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 23278 | 23367 | 23278 | ID=Msa1425210-mRNA-1:exon:4224;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 24220 | 24286 | 24220 | ID=Msa1425210-mRNA-1:exon:4223;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 24469 | 24593 | 24469 | ID=Msa1425210-mRNA-1:exon:4222;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 25080 | 25129 | 25080 | ID=Msa1425210-mRNA-1:exon:4221;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 25230 | 25324 | 25230 | ID=Msa1425210-mRNA-1:exon:4220;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 25724 | 25816 | 25724 | ID=Msa1425210-mRNA-1:exon:4219;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 26067 | 26145 | 26067 | ID=Msa1425210-mRNA-1:exon:4218;Parent=Msa1425210-mRNA-1 |
| tig0025831 | exon | 26245 | 26662 | 26245 | ID=Msa1425210-mRNA-1:exon:4217;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 26245 | 26662 | 26245 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 26067 | 26145 | 26067 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 25724 | 25816 | 25724 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 25230 | 25324 | 25230 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 25080 | 25129 | 25080 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 24469 | 24593 | 24469 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 24220 | 24286 | 24220 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 23278 | 23367 | 23278 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 23010 | 23121 | 23010 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | CDS | 22572 | 22639 | 22572 | ID=Msa1425210-mRNA-1:cds;Parent=Msa1425210-mRNA-1 |
| tig0025831 | three_prime_UTR | 22231 | 22571 | 22231 | ID=Msa1425210-mRNA-1:three_prime_utr;Parent=Msa1425210-mRNA-1 |
| tig0025831 | three_prime_UTR | 22057 | 22084 | 22057 | ID=Msa1425210-mRNA-1:three_prime_utr;Parent=Msa1425210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
