Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457780 | XP_003603980.2 | 83.516 | 364 | 16 | 6 | 45 | 402 | 1 | 326 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457780 | sp|Q6NPM8|HIS7_ARATH | 67.568 | 296 | 64 | 2 | 107 | 402 | 82 | 345 | 2.12e-147 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457780 | G7J7Q5 | 83.516 | 364 | 16 | 6 | 45 | 402 | 1 | 326 | 0.0 | 594 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077370 | Msa1457780 | -0.811435 | 7.011071e-51 | -8.615850e-47 |
| Msa1382380 | Msa1457780 | 0.805731 | 1.158516e-49 | -8.615850e-47 |
| Msa1425210 | Msa1457780 | 0.970972 | 1.950613e-132 | -8.615850e-47 |
| Msa1298390 | Msa1457780 | 0.815109 | 1.093868e-51 | -8.615850e-47 |
| Msa0367540 | Msa1457780 | 0.826754 | 2.280368e-54 | -8.615850e-47 |
| Msa0383870 | Msa1457780 | 0.814836 | 1.257762e-51 | -8.615850e-47 |
| Msa0403470 | Msa1457780 | 0.810299 | 1.234877e-50 | -8.615850e-47 |
| Msa0415160 | Msa1457780 | 0.811098 | 8.297763e-51 | -8.615850e-47 |
| Msa0982090 | Msa1457780 | 0.808229 | 3.432112e-50 | -8.615850e-47 |
| Msa1087520 | Msa1457780 | 0.823754 | 1.168166e-53 | -8.615850e-47 |
| Msa0327990 | Msa1457780 | 0.800914 | 1.152403e-48 | -8.615850e-47 |
| Msa0529000 | Msa1457780 | -0.801992 | 6.929158e-49 | -8.615850e-47 |
| Msa0548650 | Msa1457780 | 0.803254 | 3.805842e-49 | -8.615850e-47 |
| Msa0968470 | Msa1457780 | 0.816743 | 4.725547e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457780 | MtrunA17_Chr3g0145001 | 83.516 | 364 | 16 | 6 | 45 | 402 | 1 | 326 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457780 | AT4G39120.1 | 67.568 | 296 | 64 | 2 | 107 | 402 | 82 | 345 | 2.16e-148 | 424 |
| Msa1457780 | AT4G39120.2 | 67.568 | 296 | 64 | 2 | 107 | 402 | 111 | 374 | 1.04e-147 | 424 |
| Msa1457780 | AT3G02870.1 | 24.275 | 276 | 157 | 5 | 108 | 369 | 7 | 244 | 5.22e-15 | 75.1 |
| Msa1457780 | AT3G02870.3 | 23.372 | 261 | 148 | 5 | 123 | 369 | 19 | 241 | 7.06e-15 | 74.7 |
| Msa1457780 | AT3G02870.2 | 24.088 | 274 | 158 | 5 | 108 | 369 | 7 | 242 | 1.83e-14 | 73.6 |
Find 122 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTTATGATAGAAAATA+TGG | 0.158199 | tig0039114:-841 | Msa1457780:three_prime_UTR |
| TATACTTAGTTCAGAATAAA+TGG | 0.203512 | tig0039114:+1064 | Msa1457780:intergenic |
| GCATATGCTCTCTTGTCTTC+TGG | 0.208968 | tig0039114:-1880 | Msa1457780:CDS |
| ATTTCAGGGAAACCCTTATT+TGG | 0.225874 | tig0039114:-3683 | Msa1457780:intron |
| GTCCCTGCATGGTCAATTTC+AGG | 0.226562 | tig0039114:+643 | Msa1457780:intergenic |
| TAGCAAGGATTATGGGTTAT+TGG | 0.244682 | tig0039114:-4328 | Msa1457780:CDS |
| TCCTTCAGTAGCAAGGATTA+TGG | 0.248211 | tig0039114:-4336 | Msa1457780:CDS |
| TGACGAATCGTTTCCCATTC+AGG | 0.249454 | tig0039114:+799 | Msa1457780:intergenic |
| GGAAAGAGAACTACACTAAA+TGG | 0.260270 | tig0039114:-3086 | Msa1457780:CDS |
| TTTGCAATTTATCTGCATTC+AGG | 0.262443 | tig0039114:+768 | Msa1457780:intergenic |
| AGCAATGAGAGTACCAAATA+AGG | 0.271556 | tig0039114:+3670 | Msa1457780:intergenic |
| GAAAGATGGATTGGAATAAC+TGG | 0.286544 | tig0039114:-3107 | Msa1457780:CDS |
| TATTTCTTCTGAAATATTTA+CGG | 0.288559 | tig0039114:+4842 | Msa1457780:intergenic |
| GATAAATAAACGCCGAATAA+TGG | 0.294569 | tig0039114:+1029 | Msa1457780:intergenic |
| CAGGTTAAAATTCCATTATA+TGG | 0.304659 | tig0039114:-1916 | Msa1457780:CDS |
| TTTATTCTGAACTAAGTATA+AGG | 0.324941 | tig0039114:-1061 | Msa1457780:three_prime_UTR |
| TCAATTTATTCGGTCGGAAT+TGG | 0.336506 | tig0039114:+4998 | Msa1457780:intergenic |
| AGCAAGGATTATGGGTTATT+GGG | 0.337153 | tig0039114:-4327 | Msa1457780:CDS |
| AAGACAGTGCTGATTATGTT+TGG | 0.340004 | tig0039114:-3839 | Msa1457780:CDS |
| AATGGAGAGGTCAATTTATT+CGG | 0.349646 | tig0039114:+4988 | Msa1457780:intergenic |
| CCTTCAGTAGCAAGGATTAT+GGG | 0.354601 | tig0039114:-4335 | Msa1457780:CDS |
| AAGGATGGACAGAGGACTTC+TGG | 0.359093 | tig0039114:+4354 | Msa1457780:intergenic |
| TGCAGTTACGGAGAAGAAAA+AGG | 0.363328 | tig0039114:-3876 | Msa1457780:intron |
| TAGCAATCACAACCATATAA+TGG | 0.365852 | tig0039114:+1904 | Msa1457780:intergenic |
| CCTCCAGAGCCTTCAATAAC+AGG | 0.372058 | tig0039114:+1643 | Msa1457780:intergenic |
| CTGGGAGATGATAATGATAA+TGG | 0.373428 | tig0039114:+4970 | Msa1457780:intergenic |
| AGGCTCATGATTCCATTATT+CGG | 0.375278 | tig0039114:-1041 | Msa1457780:three_prime_UTR |
| AGATTCATTACAATGGTAGT+AGG | 0.392307 | tig0039114:-1136 | Msa1457780:exon |
| TTGCAATTTATCTGCATTCA+GGG | 0.396961 | tig0039114:+769 | Msa1457780:intergenic |
| GCATTGATACCTGTTATTGA+AGG | 0.408969 | tig0039114:-1652 | Msa1457780:CDS |
| TGGGTATTAGATCCTATTGA+TGG | 0.425370 | tig0039114:-3819 | Msa1457780:CDS |
| GTGGATCTTGTCGTTGAGTC+CGG | 0.426317 | tig0039114:-1853 | Msa1457780:CDS |
| AGACAGTGCTGATTATGTTT+GGG | 0.427573 | tig0039114:-3838 | Msa1457780:CDS |
| AAGCTCTTAGTTCCATCAAT+AGG | 0.428762 | tig0039114:+3807 | Msa1457780:intergenic |
| ATTTATCACAACAGTTCAAA+TGG | 0.440312 | tig0039114:-1013 | Msa1457780:three_prime_UTR |
| TATAGAAACTGTTCCGGACT+GGG | 0.441001 | tig0039114:+4299 | Msa1457780:intergenic |
| GACGAATCGTTTCCCATTCA+GGG | 0.441562 | tig0039114:+800 | Msa1457780:intergenic |
| GAATTTATGATAGAAAATAT+GGG | 0.450722 | tig0039114:-840 | Msa1457780:three_prime_UTR |
| TAGTCACTTTAGTCCCTGAA+TGG | 0.451969 | tig0039114:-813 | Msa1457780:three_prime_UTR |
| GACTAACGAAGTCTACATTC+AGG | 0.452326 | tig0039114:+675 | Msa1457780:intergenic |
| ATACCTGTTATTGAAGGCTC+TGG | 0.458695 | tig0039114:-1646 | Msa1457780:CDS |
| TTATCATATAGAAACTGTTC+CGG | 0.458960 | tig0039114:+4293 | Msa1457780:intergenic |
| CATTGCTCTGAGTCTAAGAC+TGG | 0.462684 | tig0039114:+4951 | Msa1457780:intergenic |
| CTGGAGGTGTCATAACTGAT+TGG | 0.474782 | tig0039114:-1627 | Msa1457780:CDS |
| TGACAAACAGATTCATCAAC+AGG | 0.476165 | tig0039114:-1163 | Msa1457780:CDS |
| AGTCACTTTAGTCCCTGAAT+GGG | 0.482734 | tig0039114:-812 | Msa1457780:three_prime_UTR |
| GATTGATCAGCAATGGTGAC+AGG | 0.483827 | tig0039114:+4691 | Msa1457780:intergenic |
| AACCTGTGTTAAAAGAAAGA+TGG | 0.484728 | tig0039114:-3121 | Msa1457780:CDS |
| GACATCTCCGGCGGCGTCGG+CGG | 0.484833 | tig0039114:+4867 | Msa1457780:intergenic |
| GCAATGAGAGTACCAAATAA+GGG | 0.487130 | tig0039114:+3671 | Msa1457780:intergenic |
| AATAAAGCCGCCGACGCCGC+CGG | 0.502814 | tig0039114:-4874 | Msa1457780:CDS |
| TTCAACTGCGGTGCGGTCGT+TGG | 0.508615 | tig0039114:+5110 | Msa1457780:intergenic |
| TAAATAACGTTCACAAGGGC+TGG | 0.510267 | tig0039114:+984 | Msa1457780:intergenic |
| GATGACATCTCCGGCGGCGT+CGG | 0.513194 | tig0039114:+4864 | Msa1457780:intergenic |
| ATATAGAAACTGTTCCGGAC+TGG | 0.514705 | tig0039114:+4298 | Msa1457780:intergenic |
| TCCCTGCATGGTCAATTTCA+GGG | 0.516315 | tig0039114:+644 | Msa1457780:intergenic |
| CATACAAATATGCTTGAGAA+AGG | 0.516891 | tig0039114:+3033 | Msa1457780:intergenic |
| ACGGATGCCGCCGTCGGAGA+AGG | 0.517402 | tig0039114:+5141 | Msa1457780:intergenic |
| AAGTGATTGAGTTGGTGAGG+AGG | 0.518635 | tig0039114:+4910 | Msa1457780:intergenic |
| GTGAGGAGGCGAAGATGAGG+TGG | 0.520064 | tig0039114:+4924 | Msa1457780:intergenic |
| CTGCGGTGCGGTCGTTGGAG+AGG | 0.522376 | tig0039114:+5115 | Msa1457780:intergenic |
| ATGAAAATAATAGTAGCCAT+TGG | 0.529626 | tig0039114:-5219 | Msa1457780:CDS |
| GTGTTAAAAGAAAGATGGAT+TGG | 0.539044 | tig0039114:-3116 | Msa1457780:CDS |
| CCCATAATCCTTGCTACTGA+AGG | 0.542938 | tig0039114:+4335 | Msa1457780:intergenic |
| GAAGAGATGCTAATTAGTCT+TGG | 0.546269 | tig0039114:-872 | Msa1457780:three_prime_UTR |
| TGTCGTTGAGTCCGGTCTGA+AGG | 0.549615 | tig0039114:-1845 | Msa1457780:intron |
| CGGTCGGAATTGGCTACGGA+AGG | 0.550785 | tig0039114:+5008 | Msa1457780:intergenic |
| ATCAATGCAAGAAAATCGTA+TGG | 0.556779 | tig0039114:+1667 | Msa1457780:intergenic |
| ATATTTACGGATGACATCTC+CGG | 0.558092 | tig0039114:+4855 | Msa1457780:intergenic |
| GATTCATTACAATGGTAGTA+GGG | 0.560798 | tig0039114:-1135 | Msa1457780:exon |
| CCTGTTATTGAAGGCTCTGG+AGG | 0.564575 | tig0039114:-1643 | Msa1457780:CDS |
| TAGTTCAGAATAAATGGAAA+CGG | 0.564632 | tig0039114:+1070 | Msa1457780:intergenic |
| GGAAAGGACATCAACTCCGA+TGG | 0.565742 | tig0039114:-1606 | Msa1457780:CDS |
| AGGAGGCGAAGATGAGGTGG+AGG | 0.566097 | tig0039114:+4927 | Msa1457780:intergenic |
| ACTACATACATGGCATGAGA+AGG | 0.566117 | tig0039114:+4628 | Msa1457780:intergenic |
| TCAATCCGCTGAGGAAGCTA+TGG | 0.566288 | tig0039114:-4674 | Msa1457780:CDS |
| TATTCGGTCGGAATTGGCTA+CGG | 0.567668 | tig0039114:+5004 | Msa1457780:intergenic |
| ATACTTGTTGCGATTGAAAG+TGG | 0.568576 | tig0039114:+1574 | Msa1457780:intergenic |
| AATTTATGATAGAAAATATG+GGG | 0.569935 | tig0039114:-839 | Msa1457780:three_prime_UTR |
| ACTAACGAAGTCTACATTCA+GGG | 0.571668 | tig0039114:+676 | Msa1457780:intergenic |
| GAGAAGTGATTGAGTTGGTG+AGG | 0.573075 | tig0039114:+4907 | Msa1457780:intergenic |
| AGGGAAATTGTCAAGTATGA+CGG | 0.576179 | tig0039114:+4648 | Msa1457780:intergenic |
| TAATCCTTGCTACTGAAGGA+TGG | 0.581931 | tig0039114:+4339 | Msa1457780:intergenic |
| CGTCGGAGAAGTGATTGAGT+TGG | 0.585283 | tig0039114:+4902 | Msa1457780:intergenic |
| CTACATACATGGCATGAGAA+GGG | 0.587143 | tig0039114:+4629 | Msa1457780:intergenic |
| AAGGTCCGCACAAGTGCGCG+TGG | 0.587579 | tig0039114:+3052 | Msa1457780:intergenic |
| GAGAGGTCAATTTATTCGGT+CGG | 0.588910 | tig0039114:+4992 | Msa1457780:intergenic |
| TTGGTGAGGAGGCGAAGATG+AGG | 0.591125 | tig0039114:+4921 | Msa1457780:intergenic |
| GGTCGGAATTGGCTACGGAA+GGG | 0.592220 | tig0039114:+5009 | Msa1457780:intergenic |
| GTCTGATATTCCTTCTCCGA+CGG | 0.596456 | tig0039114:-5151 | Msa1457780:CDS |
| CTGTCCATCCTTCAGTAGCA+AGG | 0.596760 | tig0039114:-4343 | Msa1457780:CDS |
| TTATTGGGTGAAACCCAGTC+CGG | 0.597564 | tig0039114:-4312 | Msa1457780:CDS |
| AGTGTCCACGCGCACTTGTG+CGG | 0.600150 | tig0039114:-3057 | Msa1457780:CDS |
| CAAGTTGTAATCTTCTCTAG+AGG | 0.605556 | tig0039114:-1093 | Msa1457780:three_prime_UTR |
| TGATATTCCTTCTCCGACGG+CGG | 0.606481 | tig0039114:-5148 | Msa1457780:CDS |
| CATACAACCACATGATCCAA+TGG | 0.607602 | tig0039114:+5203 | Msa1457780:intergenic |
| GCGGTCGTTGGAGAGGAAGA+CGG | 0.608562 | tig0039114:+5122 | Msa1457780:intergenic |
| GAAAGGACATCAACTCCGAT+GGG | 0.610241 | tig0039114:-1605 | Msa1457780:CDS |
| GGCGGCTTTATTAGCGACGT+CGG | 0.614790 | tig0039114:+4885 | Msa1457780:intergenic |
| ACGTATAAATAACGTTCACA+AGG | 0.616485 | tig0039114:+979 | Msa1457780:intergenic |
| ATAGTAGCCATTGGATCATG+TGG | 0.616601 | tig0039114:-5210 | Msa1457780:CDS |
| AGGAAGACGGATGCCGCCGT+CGG | 0.619283 | tig0039114:+5135 | Msa1457780:intergenic |
| CTCAGCGGATTGATCAGCAA+TGG | 0.622443 | tig0039114:+4684 | Msa1457780:intergenic |
| GGAACTAAGAGCTTTATCAC+TGG | 0.625155 | tig0039114:-3798 | Msa1457780:intron |
| CAGGTTGATCAATTATGCCA+AGG | 0.625843 | tig0039114:+3138 | Msa1457780:intergenic |
| TCAGGGACTAAATTGACTAA+CGG | 0.636423 | tig0039114:+693 | Msa1457780:intergenic |
| AGTACGGAATACCTTCAGAC+CGG | 0.643132 | tig0039114:+1834 | Msa1457780:intergenic |
| ATTTATCCGTGTTAGAGACA+AGG | 0.644402 | tig0039114:-2787 | Msa1457780:intron |
| AAAGTGGTGAAGCTTCCCAT+CGG | 0.647770 | tig0039114:+1590 | Msa1457780:intergenic |
| GGCAAAATGAGTAGTCAATG+AGG | 0.649690 | tig0039114:-920 | Msa1457780:three_prime_UTR |
| GGTGTCATAACTGATTGGAA+AGG | 0.656001 | tig0039114:-1622 | Msa1457780:CDS |
| AGATGATAATGATAATGGAG+AGG | 0.663317 | tig0039114:+4975 | Msa1457780:intergenic |
| AACAGACCTTGTCTCTAACA+CGG | 0.678950 | tig0039114:+2781 | Msa1457780:intergenic |
| AGGCTCTAGATTCATTACAA+TGG | 0.681171 | tig0039114:-1143 | Msa1457780:CDS |
| CGTATAAATAACGTTCACAA+GGG | 0.683635 | tig0039114:+980 | Msa1457780:intergenic |
| TGCTACTGAAGGATGGACAG+AGG | 0.693174 | tig0039114:+4346 | Msa1457780:intergenic |
| ATTGCTCTGAGTCTAAGACT+GGG | 0.703906 | tig0039114:+4952 | Msa1457780:intergenic |
| CATTGCTGATCAATCCGCTG+AGG | 0.709748 | tig0039114:-4683 | Msa1457780:CDS |
| TTTACGGATGACATCTCCGG+CGG | 0.710560 | tig0039114:+4858 | Msa1457770:intergenic |
| TGACAACAACATTTCAACTG+CGG | 0.719870 | tig0039114:+5098 | Msa1457770:intergenic |
| ACAACATTTCAACTGCGGTG+CGG | 0.727155 | tig0039114:+5103 | Msa1457770:intergenic |
| GGAAACCATAGCTTCCTCAG+CGG | 0.774815 | tig0039114:+4669 | Msa1457770:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATATTTTTATGTATA+AGG | + | tig0039114:4381-4400 | Msa1457780:intergenic | 10.0% |
| !! | TACATAAAAATATAACAAAT+AGG | - | tig0039114:4383-4402 | Msa1457780:intron | 10.0% |
| !!! | TTATTGTTTTTATTATTAGG+AGG | + | tig0039114:840-859 | Msa1457780:intergenic | 15.0% |
| !!! | TATTTCTTCTGAAATATTTA+CGG | + | tig0039114:1034-1053 | Msa1457780:intergenic | 15.0% |
| !!! | AAACTTTAAGTTTTTAAGTT+TGG | - | tig0039114:2695-2714 | Msa1457780:intron | 15.0% |
| !! | AACCTAGATATATATAATTT+GGG | + | tig0039114:3899-3918 | Msa1457780:intergenic | 15.0% |
| !! | AAACCTAGATATATATAATT+TGG | + | tig0039114:3900-3919 | Msa1457780:intergenic | 15.0% |
| !! | AGATGATTAAAACAATATTT+GGG | - | tig0039114:4128-4147 | Msa1457780:intron | 15.0% |
| !!! | ACATTTTATTCAATCTAAAA+GGG | - | tig0039114:4494-4513 | Msa1457780:intron | 15.0% |
| !! | TGAATTTATGATAGAAAATA+TGG | - | tig0039114:5032-5051 | Msa1457780:CDS | 15.0% |
| !! | GAATTTATGATAGAAAATAT+GGG | - | tig0039114:5033-5052 | Msa1457780:CDS | 15.0% |
| !! | AATTTATGATAGAAAATATG+GGG | - | tig0039114:5034-5053 | Msa1457780:CDS | 15.0% |
| !! | CAATAGCAATAAAAAAAGTT+AGG | + | tig0039114:1288-1307 | Msa1457780:intergenic | 20.0% |
| !!! | ATCACCTCATTAATATTTTT+CGG | - | tig0039114:2109-2128 | Msa1457780:intron | 20.0% |
| !! | TAACGTATTACAAAGTTAAA+AGG | - | tig0039114:2315-2334 | Msa1457780:intron | 20.0% |
| !! | ATATGTGTAGCTAAAATATA+AGG | + | tig0039114:2583-2602 | Msa1457780:intergenic | 20.0% |
| !! | CATATGAATTGTAAAATTCA+TGG | + | tig0039114:2987-3006 | Msa1457780:intergenic | 20.0% |
| !!! | CATGAATTTTACAATTCATA+TGG | - | tig0039114:2985-3004 | Msa1457780:intron | 20.0% |
| !! | TTCAAAATCATCATTAAAAG+GGG | + | tig0039114:3345-3364 | Msa1457780:intergenic | 20.0% |
| !! | GTTCAAAATCATCATTAAAA+GGG | + | tig0039114:3346-3365 | Msa1457780:intergenic | 20.0% |
| !! | TGTTCAAAATCATCATTAAA+AGG | + | tig0039114:3347-3366 | Msa1457780:intergenic | 20.0% |
| !! | TTCAAACCAAATAAATGATT+GGG | + | tig0039114:3489-3508 | Msa1457780:intergenic | 20.0% |
| !! | TTAATACTCTATTTATGACA+GGG | + | tig0039114:3716-3735 | Msa1457780:intergenic | 20.0% |
| !! | ATTAATACTCTATTTATGAC+AGG | + | tig0039114:3717-3736 | Msa1457780:intergenic | 20.0% |
| !! | TAGAAATTAAAATAGTGCAT+AGG | + | tig0039114:3795-3814 | Msa1457780:intergenic | 20.0% |
| !! | TTCCCAAATTATATATATCT+AGG | - | tig0039114:3894-3913 | Msa1457780:intron | 20.0% |
| !! | CAGATGATTAAAACAATATT+TGG | - | tig0039114:4127-4146 | Msa1457780:intron | 20.0% |
| !!! | TTTTTTTTTGACAACAAAAG+TGG | - | tig0039114:4430-4449 | Msa1457780:intron | 20.0% |
| !!! | CACATTTTATTCAATCTAAA+AGG | - | tig0039114:4493-4512 | Msa1457780:intron | 20.0% |
| !! | TATACTTAGTTCAGAATAAA+TGG | + | tig0039114:4812-4831 | Msa1457780:intergenic | 20.0% |
| !! | TTTATTCTGAACTAAGTATA+AGG | - | tig0039114:4812-4831 | Msa1457780:CDS | 20.0% |
| ! | ATGAAAATAATAGTAGCCAT+TGG | - | tig0039114:654-673 | Msa1457780:three_prime_UTR | 25.0% |
| ! | TTATCATATAGAAACTGTTC+CGG | + | tig0039114:1583-1602 | Msa1457780:intergenic | 25.0% |
| ! | ACAAACAAGTTAATCCAAAA+AGG | - | tig0039114:1819-1838 | Msa1457780:intron | 25.0% |
| !! | ATTTCTTTTGTATCCATTTC+AGG | - | tig0039114:2175-2194 | Msa1457780:intron | 25.0% |
| !! | TTTCTTTTGTATCCATTTCA+GGG | - | tig0039114:2176-2195 | Msa1457780:intron | 25.0% |
| ! | TTCATGATATAAGTTTGCAA+AGG | + | tig0039114:2881-2900 | Msa1457780:intergenic | 25.0% |
| !!! | TTTATCTACTGCTTTTAACA+TGG | - | tig0039114:2958-2977 | Msa1457780:intron | 25.0% |
| ! | TCAAAATCATCATTAAAAGG+GGG | + | tig0039114:3344-3363 | Msa1457780:intergenic | 25.0% |
| ! | AAAACACAATTGACAAAAGA+TGG | - | tig0039114:3366-3385 | Msa1457780:intron | 25.0% |
| ! | AAACACAATTGACAAAAGAT+GGG | - | tig0039114:3367-3386 | Msa1457780:intron | 25.0% |
| ! | AATCGCTCAAAAAAAAAAGA+AGG | - | tig0039114:3396-3415 | Msa1457780:intron | 25.0% |
| ! | ATCGCTCAAAAAAAAAAGAA+GGG | - | tig0039114:3397-3416 | Msa1457780:intron | 25.0% |
| ! | AATATGCCCAATCATTTATT+TGG | - | tig0039114:3480-3499 | Msa1457780:intron | 25.0% |
| ! | CTTCAAACCAAATAAATGAT+TGG | + | tig0039114:3490-3509 | Msa1457780:intergenic | 25.0% |
| !!! | ATCATTTATTTGGTTTGAAG+AGG | - | tig0039114:3490-3509 | Msa1457780:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+TGG | - | tig0039114:3615-3634 | Msa1457780:intron | 25.0% |
| !! | TTAAAATAGTGCATAGGTTT+TGG | + | tig0039114:3789-3808 | Msa1457780:intergenic | 25.0% |
| ! | CAGGTTAAAATTCCATTATA+TGG | - | tig0039114:3957-3976 | Msa1457780:intron | 25.0% |
| ! | AAAGATTAGACAATAGAGTA+CGG | + | tig0039114:4058-4077 | Msa1457780:intergenic | 25.0% |
| ! | ATTATTTGAATGTCTTCCTT+GGG | - | tig0039114:4164-4183 | Msa1457780:intron | 25.0% |
| ! | CTAAGAATGAATTAGGAATA+AGG | + | tig0039114:4358-4377 | Msa1457780:intergenic | 25.0% |
| ! | TATAAGGCTAAGAATGAATT+AGG | + | tig0039114:4365-4384 | Msa1457780:intergenic | 25.0% |
| !!! | ATTTTTTTTGCCAACAAAAG+TGG | - | tig0039114:4470-4489 | Msa1457780:intron | 25.0% |
| ! | ACAAAATCTTTCATGACTTA+AGG | + | tig0039114:4612-4631 | Msa1457780:intergenic | 25.0% |
| !!! | TCAGTTACTTTTACTTCATT+CGG | - | tig0039114:4631-4650 | Msa1457780:intron | 25.0% |
| ! | TAGTTCAGAATAAATGGAAA+CGG | + | tig0039114:4806-4825 | Msa1457780:intergenic | 25.0% |
| ! | ATTTATCACAACAGTTCAAA+TGG | - | tig0039114:4860-4879 | Msa1457780:CDS | 25.0% |
| AATGGAGAGGTCAATTTATT+CGG | + | tig0039114:888-907 | Msa1457780:intergenic | 30.0% | |
| !! | AGATGATAATGATAATGGAG+AGG | + | tig0039114:901-920 | Msa1457780:intergenic | 30.0% |
| AGAGTAACTAACTACATACA+TGG | + | tig0039114:1258-1277 | Msa1457780:intergenic | 30.0% | |
| AAATGTGACCACCTTTATAT+AGG | - | tig0039114:1457-1476 | Msa1457780:intron | 30.0% | |
| AATGTGACCACCTTTATATA+GGG | - | tig0039114:1458-1477 | Msa1457780:intron | 30.0% | |
| TAAGCATAAGCTGTATTCAT+AGG | - | tig0039114:1753-1772 | Msa1457780:intron | 30.0% | |
| ! | TATTCATAGGTTTTCTCAGA+CGG | - | tig0039114:1766-1785 | Msa1457780:intron | 30.0% |
| !! | TTCAAGTTTAAGAGCCTTTT+TGG | + | tig0039114:1836-1855 | Msa1457780:intergenic | 30.0% |
| TTGGAATTGGAATTGGAATT+TGG | - | tig0039114:1888-1907 | Msa1457780:CDS | 30.0% | |
| ! | AAAGTACAGAATCTAGAATC+TGG | + | tig0039114:1934-1953 | Msa1457780:intergenic | 30.0% |
| CACCAAATAAATTGCAGTTA+CGG | - | tig0039114:1985-2004 | Msa1457780:intron | 30.0% | |
| CTGACCGAAAAATATTAATG+AGG | + | tig0039114:2116-2135 | Msa1457780:intergenic | 30.0% | |
| ATGTCTTTGTCAAAACTTCA+TGG | + | tig0039114:2388-2407 | Msa1457780:intergenic | 30.0% | |
| TTTGACAAAGACATAGAAAC+TGG | - | tig0039114:2394-2413 | Msa1457780:intron | 30.0% | |
| TTTATGTGTCAATTTCAGTG+TGG | + | tig0039114:2423-2442 | Msa1457780:intergenic | 30.0% | |
| CGCATACAAACATATATATG+TGG | - | tig0039114:2555-2574 | Msa1457780:intron | 30.0% | |
| CAGTTTGTCTACAATGTAAT+TGG | + | tig0039114:2609-2628 | Msa1457780:intergenic | 30.0% | |
| ATTACATTGTAGACAAACTG+AGG | - | tig0039114:2609-2628 | Msa1457780:intron | 30.0% | |
| ! | TTTCCTTTTTATCAGATCCT+TGG | - | tig0039114:2718-2737 | Msa1457780:intron | 30.0% |
| AACCTGTGTTAAAAGAAAGA+TGG | - | tig0039114:2752-2771 | Msa1457780:intron | 30.0% | |
| ! | ATCCATCTTTCTTTTAACAC+AGG | + | tig0039114:2757-2776 | Msa1457780:intergenic | 30.0% |
| GTGTTAAAAGAAAGATGGAT+TGG | - | tig0039114:2757-2776 | Msa1457780:intron | 30.0% | |
| CATACAAATATGCTTGAGAA+AGG | + | tig0039114:2843-2862 | Msa1457780:intergenic | 30.0% | |
| TATCATGAACAATTCTTGAG+TGG | - | tig0039114:2892-2911 | Msa1457780:intron | 30.0% | |
| !!! | ATTTCATTTTTTCTCTACCC+AGG | - | tig0039114:3019-3038 | Msa1457780:intron | 30.0% |
| TTTCTGCACTGTTAACATAA+AGG | - | tig0039114:3122-3141 | Msa1457780:CDS | 30.0% | |
| CGATTTCAAAATATGGGTAT+GGG | + | tig0039114:3207-3226 | Msa1457780:intergenic | 30.0% | |
| !!! | CCATACCCATATTTTGAAAT+CGG | - | tig0039114:3205-3224 | Msa1457780:intron | 30.0% |
| !!! | CATACCCATATTTTGAAATC+GGG | - | tig0039114:3206-3225 | Msa1457780:intron | 30.0% |
| !!! | ATACCCATATTTTGAAATCG+GGG | - | tig0039114:3207-3226 | Msa1457780:intron | 30.0% |
| TTTCCCCGATTTCAAAATAT+GGG | + | tig0039114:3213-3232 | Msa1457780:intergenic | 30.0% | |
| ! | TTTTCCCCGATTTCAAAATA+TGG | + | tig0039114:3214-3233 | Msa1457780:intergenic | 30.0% |
| CAAAATCATCATTAAAAGGG+GGG | + | tig0039114:3343-3362 | Msa1457780:intergenic | 30.0% | |
| AACACAATTGACAAAAGATG+GGG | - | tig0039114:3368-3387 | Msa1457780:intron | 30.0% | |
| TCGCTCAAAAAAAAAAGAAG+GGG | - | tig0039114:3398-3417 | Msa1457780:intron | 30.0% | |
| TATAGCAACACTATAGCATA+AGG | - | tig0039114:3550-3569 | Msa1457780:intron | 30.0% | |
| ATAGCAACACTATAGCATAA+GGG | - | tig0039114:3551-3570 | Msa1457780:intron | 30.0% | |
| TAGCAATCACAACCATATAA+TGG | + | tig0039114:3972-3991 | Msa1457780:intergenic | 30.0% | |
| GTACTCTATTGTCTAATCTT+TGG | - | tig0039114:4057-4076 | Msa1457780:intron | 30.0% | |
| ATGACTCACAAGATTCTTAA+AGG | + | tig0039114:4094-4113 | Msa1457780:intergenic | 30.0% | |
| CATTATTTGAATGTCTTCCT+TGG | - | tig0039114:4163-4182 | Msa1457780:intron | 30.0% | |
| ATCAATGCAAGAAAATCGTA+TGG | + | tig0039114:4209-4228 | Msa1457780:intergenic | 30.0% | |
| AGGATGAAAAGTAAGAAAAG+TGG | - | tig0039114:4403-4422 | Msa1457780:intron | 30.0% | |
| !!! | ATAAAATGTGCCACTTTTGT+TGG | + | tig0039114:4483-4502 | Msa1457780:intergenic | 30.0% |
| !! | ACAAGACAACTTGTTTTCTT+TGG | + | tig0039114:4526-4545 | Msa1457780:intergenic | 30.0% |
| AAAGAAATTAAGTCAGCGTT+TGG | + | tig0039114:4571-4590 | Msa1457780:intergenic | 30.0% | |
| CTGACTTAATTTCTTTCTCT+TGG | - | tig0039114:4575-4594 | Msa1457780:intron | 30.0% | |
| AAATCTTTCATGACTTAAGG+TGG | + | tig0039114:4609-4628 | Msa1457780:intergenic | 30.0% | |
| ACAACATTAAAACCTGTCAT+AGG | + | tig0039114:4681-4700 | Msa1457780:intergenic | 30.0% | |
| !! | TATGACAGGTTTTAATGTTG+TGG | - | tig0039114:4680-4699 | Msa1457780:CDS | 30.0% |
| AGATTCATTACAATGGTAGT+AGG | - | tig0039114:4737-4756 | Msa1457780:intron | 30.0% | |
| GATTCATTACAATGGTAGTA+GGG | - | tig0039114:4738-4757 | Msa1457780:intron | 30.0% | |
| GATAAATAAACGCCGAATAA+TGG | + | tig0039114:4847-4866 | Msa1457780:intergenic | 30.0% | |
| CGTATAAATAACGTTCACAA+GGG | + | tig0039114:4896-4915 | Msa1457780:intergenic | 30.0% | |
| ACGTATAAATAACGTTCACA+AGG | + | tig0039114:4897-4916 | Msa1457780:intergenic | 30.0% | |
| ! | AAAGATAGATGTACCTTTTG+AGG | - | tig0039114:4932-4951 | Msa1457780:CDS | 30.0% |
| TTGCAATTTATCTGCATTCA+GGG | + | tig0039114:5107-5126 | Msa1457780:intergenic | 30.0% | |
| TTTGCAATTTATCTGCATTC+AGG | + | tig0039114:5108-5127 | Msa1457780:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | + | tig0039114:5136-5155 | Msa1457780:intergenic | 30.0% | |
| TGACAACAACATTTCAACTG+CGG | + | tig0039114:778-797 | Msa1457780:intergenic | 35.0% | |
| TCAATTTATTCGGTCGGAAT+TGG | + | tig0039114:878-897 | Msa1457780:intergenic | 35.0% | |
| ! | CTGGGAGATGATAATGATAA+TGG | + | tig0039114:906-925 | Msa1457780:intergenic | 35.0% |
| ATATTTACGGATGACATCTC+CGG | + | tig0039114:1021-1040 | Msa1457780:intergenic | 35.0% | |
| AGGGAAATTGTCAAGTATGA+CGG | + | tig0039114:1228-1247 | Msa1457780:intergenic | 35.0% | |
| GATGCTATTCCTTTATCATC+TGG | - | tig0039114:1360-1379 | Msa1457780:intron | 35.0% | |
| TGGTTTACACCAGATGATAA+AGG | + | tig0039114:1372-1391 | Msa1457780:intergenic | 35.0% | |
| ACACACTACACTACTTTGAT+TGG | + | tig0039114:1392-1411 | Msa1457780:intergenic | 35.0% | |
| AAAGTAGTGTAGTGTGTACA+AGG | - | tig0039114:1395-1414 | Msa1457780:intron | 35.0% | |
| ATGTGACCACCTTTATATAG+GGG | - | tig0039114:1459-1478 | Msa1457780:intron | 35.0% | |
| ! | TAGCAAGGATTATGGGTTAT+TGG | - | tig0039114:1545-1564 | Msa1457780:intron | 35.0% |
| ! | AGCAAGGATTATGGGTTATT+GGG | - | tig0039114:1546-1565 | Msa1457780:intron | 35.0% |
| ATCAACAAAATGCAGAAGAC+AGG | + | tig0039114:1862-1881 | Msa1457780:intergenic | 35.0% | |
| ! | TCTTCTGCATTTTGTTGATG+TGG | - | tig0039114:1863-1882 | Msa1457780:CDS | 35.0% |
| ! | GCATTTTGTTGATGTGGATT+TGG | - | tig0039114:1869-1888 | Msa1457780:CDS | 35.0% |
| ! | TGTTGATGTGGATTTGGAAT+TGG | - | tig0039114:1875-1894 | Msa1457780:CDS | 35.0% |
| ! | TGTGGATTTGGAATTGGAAT+TGG | - | tig0039114:1881-1900 | Msa1457780:CDS | 35.0% |
| !! | TTTAAATTACTGAAGCGCTG+AGG | - | tig0039114:1951-1970 | Msa1457780:intron | 35.0% |
| CTCCGTAACTGCAATTTATT+TGG | + | tig0039114:1990-2009 | Msa1457780:intergenic | 35.0% | |
| !! | AAGACAGTGCTGATTATGTT+TGG | - | tig0039114:2034-2053 | Msa1457780:intron | 35.0% |
| !! | AGACAGTGCTGATTATGTTT+GGG | - | tig0039114:2035-2054 | Msa1457780:intron | 35.0% |
| TGGGTATTAGATCCTATTGA+TGG | - | tig0039114:2054-2073 | Msa1457780:intron | 35.0% | |
| AAGCTCTTAGTTCCATCAAT+AGG | + | tig0039114:2069-2088 | Msa1457780:intergenic | 35.0% | |
| AAATAAGGGTTTCCCTGAAA+TGG | + | tig0039114:2191-2210 | Msa1457780:intergenic | 35.0% | |
| ATTTCAGGGAAACCCTTATT+TGG | - | tig0039114:2190-2209 | Msa1457780:intron | 35.0% | |
| !! | GCAATGAGAGTACCAAATAA+GGG | + | tig0039114:2205-2224 | Msa1457780:intergenic | 35.0% |
| !! | AGCAATGAGAGTACCAAATA+AGG | + | tig0039114:2206-2225 | Msa1457780:intergenic | 35.0% |
| ! | CTCATTGCTCTTTTGCAAAA+TGG | - | tig0039114:2217-2236 | Msa1457780:intron | 35.0% |
| GAGATGAGATAGTTACTTAC+TGG | + | tig0039114:2247-2266 | Msa1457780:intergenic | 35.0% | |
| ATTCTACATACGCATTCAAG+CGG | + | tig0039114:2273-2292 | Msa1457780:intergenic | 35.0% | |
| ATACGTTAAGAAAAGCGACT+AGG | + | tig0039114:2303-2322 | Msa1457780:intergenic | 35.0% | |
| ATGCCAAGGATCTGATAAAA+AGG | + | tig0039114:2724-2743 | Msa1457780:intergenic | 35.0% | |
| !! | GAAAGATGGATTGGAATAAC+TGG | - | tig0039114:2766-2785 | Msa1457780:intron | 35.0% |
| GGAAAGAGAACTACACTAAA+TGG | - | tig0039114:2787-2806 | Msa1457780:intron | 35.0% | |
| AACAATTCTTGAGTGGAAGA+GGG | - | tig0039114:2899-2918 | Msa1457780:intron | 35.0% | |
| ! | AACAAGGATGTTTTCGAAAC+TGG | - | tig0039114:2924-2943 | Msa1457780:intron | 35.0% |
| CATCTCCACTAAAAAGATGT+GGG | + | tig0039114:3056-3075 | Msa1457780:intergenic | 35.0% | |
| ATTTATCCGTGTTAGAGACA+AGG | - | tig0039114:3086-3105 | Msa1457780:CDS | 35.0% | |
| TGTTAACATAAAGGCAGTAC+TGG | - | tig0039114:3131-3150 | Msa1457780:CDS | 35.0% | |
| TTCAAAATATGGGTATGGGA+CGG | + | tig0039114:3203-3222 | Msa1457780:intergenic | 35.0% | |
| CCGATTTCAAAATATGGGTA+TGG | + | tig0039114:3208-3227 | Msa1457780:intergenic | 35.0% | |
| AAAATCCGTCAAATTGGGTT+TGG | - | tig0039114:3256-3275 | Msa1457780:intron | 35.0% | |
| TCGCACAATTAGCAAAAGAT+AGG | - | tig0039114:3428-3447 | Msa1457780:intron | 35.0% | |
| CGCACAATTAGCAAAAGATA+GGG | - | tig0039114:3429-3448 | Msa1457780:intron | 35.0% | |
| GCACAATTAGCAAAAGATAG+GGG | - | tig0039114:3430-3449 | Msa1457780:intron | 35.0% | |
| CACAATTAGCAAAAGATAGG+GGG | - | tig0039114:3431-3450 | Msa1457780:intron | 35.0% | |
| ACAATTAGCAAAAGATAGGG+GGG | - | tig0039114:3432-3451 | Msa1457780:intron | 35.0% | |
| ! | GATTGGGCATATTTTATCCT+TGG | + | tig0039114:3473-3492 | Msa1457780:intergenic | 35.0% |
| AATCACTTAACCAGTAAAGG+TGG | + | tig0039114:3765-3784 | Msa1457780:intergenic | 35.0% | |
| GGAAATCACTTAACCAGTAA+AGG | + | tig0039114:3768-3787 | Msa1457780:intergenic | 35.0% | |
| TTCTATCATTTGCACTCTTC+AGG | - | tig0039114:3938-3957 | Msa1457780:intron | 35.0% | |
| ! | GCATTGATACCTGTTATTGA+AGG | - | tig0039114:4221-4240 | Msa1457780:intron | 35.0% |
| ! | ATACTTGTTGCGATTGAAAG+TGG | + | tig0039114:4302-4321 | Msa1457780:intergenic | 35.0% |
| CTTAATGAATTGCCTATGAC+AGG | - | tig0039114:4666-4685 | Msa1457780:CDS | 35.0% | |
| TGACAAACAGATTCATCAAC+AGG | - | tig0039114:4710-4729 | Msa1457780:intron | 35.0% | |
| !! | AGGCTCTAGATTCATTACAA+TGG | - | tig0039114:4730-4749 | Msa1457780:intron | 35.0% |
| CAAGTTGTAATCTTCTCTAG+AGG | - | tig0039114:4780-4799 | Msa1457780:intron | 35.0% | |
| AGGCTCATGATTCCATTATT+CGG | - | tig0039114:4832-4851 | Msa1457780:CDS | 35.0% | |
| ! | ACTACTCATTTTGCCTCAAA+AGG | + | tig0039114:4948-4967 | Msa1457780:intergenic | 35.0% |
| ! | GAAGAGATGCTAATTAGTCT+TGG | - | tig0039114:5001-5020 | Msa1457780:CDS | 35.0% |
| GACTAACAAAGTCTACATTC+AGG | + | tig0039114:5137-5156 | Msa1457780:intergenic | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | + | tig0039114:5151-5170 | Msa1457780:intergenic | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | + | tig0039114:5200-5219 | Msa1457780:intergenic | 35.0% | |
| ATAGTAGCCATTGGATCATG+TGG | - | tig0039114:663-682 | Msa1457780:three_prime_UTR | 40.0% | |
| CATACAACCACATGATCCAA+TGG | + | tig0039114:673-692 | Msa1457780:intergenic | 40.0% | |
| GAGAGGTCAATTTATTCGGT+CGG | + | tig0039114:884-903 | Msa1457780:intergenic | 40.0% | |
| ! | ATTGCTCTGAGTCTAAGACT+GGG | + | tig0039114:924-943 | Msa1457780:intergenic | 40.0% |
| CTACATACATGGCATGAGAA+GGG | + | tig0039114:1247-1266 | Msa1457780:intergenic | 40.0% | |
| ACTACATACATGGCATGAGA+AGG | + | tig0039114:1248-1267 | Msa1457780:intergenic | 40.0% | |
| TTCCATCAAGAAGAGTAGCT+CGG | + | tig0039114:1427-1446 | Msa1457780:intergenic | 40.0% | |
| TAATCCTTGCTACTGAAGGA+TGG | + | tig0039114:1537-1556 | Msa1457780:intergenic | 40.0% | |
| TCCTTCAGTAGCAAGGATTA+TGG | - | tig0039114:1537-1556 | Msa1457780:intron | 40.0% | |
| CCTTCAGTAGCAAGGATTAT+GGG | - | tig0039114:1538-1557 | Msa1457780:intron | 40.0% | |
| TATAGAAACTGTTCCGGACT+GGG | + | tig0039114:1577-1596 | Msa1457780:intergenic | 40.0% | |
| ATATAGAAACTGTTCCGGAC+TGG | + | tig0039114:1578-1597 | Msa1457780:intergenic | 40.0% | |
| TGCAGTTACGGAGAAGAAAA+AGG | - | tig0039114:1997-2016 | Msa1457780:intron | 40.0% | |
| GTTACGGAGAAGAAAAAGGA+TGG | - | tig0039114:2001-2020 | Msa1457780:intron | 40.0% | |
| ! | GGAACTAAGAGCTTTATCAC+TGG | - | tig0039114:2075-2094 | Msa1457780:intron | 40.0% |
| ACTTCATGGTGTGAATCAGT+TGG | + | tig0039114:2374-2393 | Msa1457780:intergenic | 40.0% | |
| CAACGTGTGTCAGTATACAT+GGG | + | tig0039114:2490-2509 | Msa1457780:intergenic | 40.0% | |
| TCAACGTGTGTCAGTATACA+TGG | + | tig0039114:2491-2510 | Msa1457780:intergenic | 40.0% | |
| !! | CAGGTTGATCAATTATGCCA+AGG | + | tig0039114:2738-2757 | Msa1457780:intergenic | 40.0% |
| GAACAATTCTTGAGTGGAAG+AGG | - | tig0039114:2898-2917 | Msa1457780:intron | 40.0% | |
| ! | ACAAGCCCACATCTTTTTAG+TGG | - | tig0039114:3048-3067 | Msa1457780:CDS | 40.0% |
| GCATCTCCACTAAAAAGATG+TGG | + | tig0039114:3057-3076 | Msa1457780:intergenic | 40.0% | |
| ! | TTTTAGTGGAGATGCAGAAG+AGG | - | tig0039114:3062-3081 | Msa1457780:CDS | 40.0% |
| AACAGACCTTGTCTCTAACA+CGG | + | tig0039114:3095-3114 | Msa1457780:intergenic | 40.0% | |
| ! | AACATAAAGGCAGTACTGGA+CGG | - | tig0039114:3135-3154 | Msa1457780:CDS | 40.0% |
| TCAAAATATGGGTATGGGAC+GGG | + | tig0039114:3202-3221 | Msa1457780:intergenic | 40.0% | |
| CAGGGAAAATCCGTCAAATT+GGG | - | tig0039114:3251-3270 | Msa1457780:intron | 40.0% | |
| ATCATTAAAAGGGGGGAAAG+GGG | + | tig0039114:3336-3355 | Msa1457780:intergenic | 40.0% | |
| CATCATTAAAAGGGGGGAAA+GGG | + | tig0039114:3337-3356 | Msa1457780:intergenic | 40.0% | |
| TCATCATTAAAAGGGGGGAA+AGG | + | tig0039114:3338-3357 | Msa1457780:intergenic | 40.0% | |
| CAATTAGCAAAAGATAGGGG+GGG | - | tig0039114:3433-3452 | Msa1457780:intron | 40.0% | |
| GGGAAAATGCAATTAAGCCA+AGG | - | tig0039114:3453-3472 | Msa1457780:intron | 40.0% | |
| TTGTACTAAATTGCGCACAG+TGG | + | tig0039114:3600-3619 | Msa1457780:intergenic | 40.0% | |
| !! | ATTACTGACTCCACCTTTAC+TGG | - | tig0039114:3752-3771 | Msa1457780:intron | 40.0% |
| !!! | TCTCTTGTCTTCTGGTTTTG+TGG | - | tig0039114:4001-4020 | Msa1457780:intron | 40.0% |
| TGAAGTACAAAGTTCACCCA+AGG | + | tig0039114:4183-4202 | Msa1457780:intergenic | 40.0% | |
| ATACCTGTTATTGAAGGCTC+TGG | - | tig0039114:4227-4246 | Msa1457780:intron | 40.0% | |
| ! | GGTGTCATAACTGATTGGAA+AGG | - | tig0039114:4251-4270 | Msa1457780:intron | 40.0% |
| TTAAGTCAGCGTTTGGCAAT+CGG | + | tig0039114:4564-4583 | Msa1457780:intergenic | 40.0% | |
| !! | GACAGGTTTTAATGTTGTGG+CGG | - | tig0039114:4683-4702 | Msa1457780:CDS | 40.0% |
| TAAATAACGTTCACAAGGGC+TGG | + | tig0039114:4892-4911 | Msa1457780:intergenic | 40.0% | |
| GGCAAAATGAGTAGTCAATG+AGG | - | tig0039114:4953-4972 | Msa1457780:CDS | 40.0% | |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | tig0039114:5060-5079 | Msa1457780:CDS | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | tig0039114:5061-5080 | Msa1457780:CDS | 40.0% |
| GACTAACGAAGTCTACATTC+AGG | + | tig0039114:5201-5220 | Msa1457780:intergenic | 40.0% | |
| GTCTGATATTCCTTCTCCGA+CGG | - | tig0039114:722-741 | Msa1457780:intron | 45.0% | |
| ACAACATTTCAACTGCGGTG+CGG | + | tig0039114:773-792 | Msa1457780:intergenic | 45.0% | |
| TATTCGGTCGGAATTGGCTA+CGG | + | tig0039114:872-891 | Msa1457780:intergenic | 45.0% | |
| ! | CATTGCTCTGAGTCTAAGAC+TGG | + | tig0039114:925-944 | Msa1457780:intergenic | 45.0% |
| !! | AAGTGATTGAGTTGGTGAGG+AGG | + | tig0039114:966-985 | Msa1457780:intergenic | 45.0% |
| !! | GAGAAGTGATTGAGTTGGTG+AGG | + | tig0039114:969-988 | Msa1457780:intergenic | 45.0% |
| GATTGATCAGCAATGGTGAC+AGG | + | tig0039114:1185-1204 | Msa1457780:intergenic | 45.0% | |
| TTCCGAGCTACTCTTCTTGA+TGG | - | tig0039114:1422-1441 | Msa1457780:intron | 45.0% | |
| ATGGCTCCCCTATATAAAGG+TGG | + | tig0039114:1468-1487 | Msa1457780:intergenic | 45.0% | |
| AGCATGGCTCCCCTATATAA+AGG | + | tig0039114:1471-1490 | Msa1457780:intergenic | 45.0% | |
| CACAGGAGTCAATTACAGCA+TGG | + | tig0039114:1487-1506 | Msa1457780:intergenic | 45.0% | |
| CCCATAATCCTTGCTACTGA+AGG | + | tig0039114:1541-1560 | Msa1457780:intergenic | 45.0% | |
| TTATTGGGTGAAACCCAGTC+CGG | - | tig0039114:1561-1580 | Msa1457780:intron | 45.0% | |
| ! | GAAGTATCTTGAACAGCTCG+CGG | - | tig0039114:1722-1741 | Msa1457780:intron | 45.0% |
| ACGGAGAAGAAAAAGGATGG+AGG | - | tig0039114:2004-2023 | Msa1457780:intron | 45.0% | |
| !! | AACAGTTAGCACTGACACCT+CGG | + | tig0039114:2534-2553 | Msa1457780:intergenic | 45.0% |
| TGAGTGGAAGAGGGATAACA+AGG | - | tig0039114:2908-2927 | Msa1457780:intron | 45.0% | |
| ! | ACATAAAGGCAGTACTGGAC+GGG | - | tig0039114:3136-3155 | Msa1457780:CDS | 45.0% |
| ! | GGATTTTCCCTGCTTTGACT+GGG | + | tig0039114:3243-3262 | Msa1457780:intergenic | 45.0% |
| GCAGGGAAAATCCGTCAAAT+TGG | - | tig0039114:3250-3269 | Msa1457780:intron | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | + | tig0039114:3264-3283 | Msa1457780:intergenic | 45.0% | |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | - | tig0039114:3261-3280 | Msa1457780:intron | 45.0% |
| ! | CGTCAAATTGGGTTTGGTTC+GGG | - | tig0039114:3262-3281 | Msa1457780:intron | 45.0% |
| GCAACAAACATCATACCCGT+GGG | + | tig0039114:3294-3313 | Msa1457780:intergenic | 45.0% | |
| CAGTTTACAGTGCTGTGAAC+TGG | - | tig0039114:3822-3841 | Msa1457780:CDS | 45.0% | |
| ! | GCTGTGAACTGGTCTATGTA+TGG | - | tig0039114:3833-3852 | Msa1457780:CDS | 45.0% |
| GCATATGCTCTCTTGTCTTC+TGG | - | tig0039114:3993-4012 | Msa1457780:intron | 45.0% | |
| AGTACGGAATACCTTCAGAC+CGG | + | tig0039114:4042-4061 | Msa1457780:intergenic | 45.0% | |
| !! | CTGGAGGTGTCATAACTGAT+TGG | - | tig0039114:4246-4265 | Msa1457780:intron | 45.0% |
| GAAAGGACATCAACTCCGAT+GGG | - | tig0039114:4268-4287 | Msa1457780:intron | 45.0% | |
| AAAGTGGTGAAGCTTCCCAT+CGG | + | tig0039114:4286-4305 | Msa1457780:intergenic | 45.0% | |
| CGTTTGGCAATCGGATGAAA+TGG | + | tig0039114:4555-4574 | Msa1457780:intergenic | 45.0% | |
| GACGAATCGTTTCCCATTCA+GGG | + | tig0039114:5076-5095 | Msa1457780:intergenic | 45.0% | |
| TGACGAATCGTTTCCCATTC+AGG | + | tig0039114:5077-5096 | Msa1457780:intergenic | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | + | tig0039114:5168-5187 | Msa1457780:intergenic | 45.0% | |
| !!! | TTATTATTGTTTTTATTATT+AGG | + | tig0039114:843-862 | Msa1457780:intergenic | 5.0% |
| TGATATTCCTTCTCCGACGG+CGG | - | tig0039114:725-744 | Msa1457780:intron | 50.0% | |
| CGTCGGAGAAGTGATTGAGT+TGG | + | tig0039114:974-993 | Msa1457780:intergenic | 50.0% | |
| TTTACGGATGACATCTCCGG+CGG | + | tig0039114:1018-1037 | Msa1457780:intergenic | 50.0% | |
| !! | CTCAGCGGATTGATCAGCAA+TGG | + | tig0039114:1192-1211 | Msa1457780:intergenic | 50.0% |
| CATTGCTGATCAATCCGCTG+AGG | - | tig0039114:1190-1209 | Msa1457780:intron | 50.0% | |
| TCAATCCGCTGAGGAAGCTA+TGG | - | tig0039114:1199-1218 | Msa1457780:intron | 50.0% | |
| GGAAACCATAGCTTCCTCAG+CGG | + | tig0039114:1207-1226 | Msa1457780:intergenic | 50.0% | |
| AAGGATGGACAGAGGACTTC+TGG | + | tig0039114:1522-1541 | Msa1457780:intergenic | 50.0% | |
| TGCTACTGAAGGATGGACAG+AGG | + | tig0039114:1530-1549 | Msa1457780:intergenic | 50.0% | |
| CTGTCCATCCTTCAGTAGCA+AGG | - | tig0039114:1530-1549 | Msa1457780:intron | 50.0% | |
| !! | AATTACTGAAGCGCTGAGGC+TGG | - | tig0039114:1955-1974 | Msa1457780:intron | 50.0% |
| !! | TTAGCACTGACACCTCGGAT+TGG | + | tig0039114:2529-2548 | Msa1457780:intergenic | 50.0% |
| TGTGGGCTTGTAGTGTACCT+GGG | + | tig0039114:3039-3058 | Msa1457780:intergenic | 50.0% | |
| ATGTGGGCTTGTAGTGTACC+TGG | + | tig0039114:3040-3059 | Msa1457780:intergenic | 50.0% | |
| ! | TACTGGACGGGTTTGGGTAT+GGG | - | tig0039114:3148-3167 | Msa1457780:intron | 50.0% |
| TATGGGTATGGGACGGGTAA+CGG | + | tig0039114:3196-3215 | Msa1457780:intergenic | 50.0% | |
| AACCCAAACCCAGTCAAAGC+AGG | - | tig0039114:3232-3251 | Msa1457780:intron | 50.0% | |
| ACCCAAACCCAGTCAAAGCA+GGG | - | tig0039114:3233-3252 | Msa1457780:intron | 50.0% | |
| TCCCTGCTTTGACTGGGTTT+GGG | + | tig0039114:3237-3256 | Msa1457780:intergenic | 50.0% | |
| TTCCCTGCTTTGACTGGGTT+TGG | + | tig0039114:3238-3257 | Msa1457780:intergenic | 50.0% | |
| ! | CGGATTTTCCCTGCTTTGAC+TGG | + | tig0039114:3244-3263 | Msa1457780:intergenic | 50.0% |
| !! | AAATTGGGTTTGGTTCGGGC+TGG | - | tig0039114:3266-3285 | Msa1457780:intron | 50.0% |
| GGCAACAAACATCATACCCG+TGG | + | tig0039114:3295-3314 | Msa1457780:intergenic | 50.0% | |
| GAAAGGGGACAAAAGATGGG+GGG | + | tig0039114:3321-3340 | Msa1457780:intergenic | 50.0% | |
| GGAAAGGGGACAAAAGATGG+GGG | + | tig0039114:3322-3341 | Msa1457780:intergenic | 50.0% | |
| GGGAAAGGGGACAAAAGATG+GGG | + | tig0039114:3323-3342 | Msa1457780:intergenic | 50.0% | |
| GGGGAAAGGGGACAAAAGAT+GGG | + | tig0039114:3324-3343 | Msa1457780:intergenic | 50.0% | |
| ! | GAACAAACCGCCTTTTCCCT+CGG | - | tig0039114:3676-3695 | Msa1457780:CDS | 50.0% |
| ! | AACAAACCGCCTTTTCCCTC+GGG | - | tig0039114:3677-3696 | Msa1457780:CDS | 50.0% |
| GTGGATCTTGTCGTTGAGTC+CGG | - | tig0039114:4020-4039 | Msa1457780:intron | 50.0% | |
| CCTCCAGAGCCTTCAATAAC+AGG | + | tig0039114:4233-4252 | Msa1457780:intergenic | 50.0% | |
| ! | CCTGTTATTGAAGGCTCTGG+AGG | - | tig0039114:4230-4249 | Msa1457780:intron | 50.0% |
| GGAAAGGACATCAACTCCGA+TGG | - | tig0039114:4267-4286 | Msa1457780:intron | 50.0% | |
| !! | GGTTTTAATGTTGTGGCGGC+TGG | - | tig0039114:4687-4706 | Msa1457780:CDS | 50.0% |
| GACTAACGGAGTCTGCATTC+AGG | + | tig0039114:5169-5188 | Msa1457780:intergenic | 50.0% | |
| GGTCGGAATTGGCTACGGAA+GGG | + | tig0039114:867-886 | Msa1457780:intergenic | 55.0% | |
| TTGGTGAGGAGGCGAAGATG+AGG | + | tig0039114:955-974 | Msa1457780:intergenic | 55.0% | |
| !! | GGCGGCTTTATTAGCGACGT+CGG | + | tig0039114:991-1010 | Msa1457780:intergenic | 55.0% |
| TGCGATTCACTCACTCACGC+AGG | - | tig0039114:1158-1177 | Msa1457780:CDS | 55.0% | |
| CTGCACATACCTCCAATCCG+AGG | - | tig0039114:2514-2533 | Msa1457780:intron | 55.0% | |
| ! | AAGGCAGTACTGGACGGGTT+TGG | - | tig0039114:3141-3160 | Msa1457780:CDS | 55.0% |
| ! | AGGCAGTACTGGACGGGTTT+GGG | - | tig0039114:3142-3161 | Msa1457780:CDS | 55.0% |
| ! | GTACTGGACGGGTTTGGGTA+TGG | - | tig0039114:3147-3166 | Msa1457780:intron | 55.0% |
| ! | GACGGGTTTGGGTATGGGTT+CGG | - | tig0039114:3153-3172 | Msa1457780:intron | 55.0% |
| ACGGGTTTGGGTATGGGTTC+GGG | - | tig0039114:3154-3173 | Msa1457780:intron | 55.0% | |
| TTTGGGTATGGGTTCGGGGT+GGG | - | tig0039114:3159-3178 | Msa1457780:intron | 55.0% | |
| ATGGGTATGGGACGGGTAAC+GGG | + | tig0039114:3195-3214 | Msa1457780:intergenic | 55.0% | |
| GGGGGAAAGGGGACAAAAGA+TGG | + | tig0039114:3325-3344 | Msa1457780:intergenic | 55.0% | |
| GCTGCTATAGCACTGTTGCG+TGG | - | tig0039114:3645-3664 | Msa1457780:intron | 55.0% | |
| GCTATAGCACTGTTGCGTGG+CGG | - | tig0039114:3648-3667 | Msa1457780:intron | 55.0% | |
| TGTCGTTGAGTCCGGTCTGA+AGG | - | tig0039114:4028-4047 | Msa1457780:intron | 55.0% | |
| GCGGTCGTTGGAGAGGAAGA+CGG | + | tig0039114:754-773 | Msa1457780:intergenic | 60.0% | |
| TTCAACTGCGGTGCGGTCGT+TGG | + | tig0039114:766-785 | Msa1457780:intergenic | 60.0% | |
| CGGTCGGAATTGGCTACGGA+AGG | + | tig0039114:868-887 | Msa1457780:intergenic | 60.0% | |
| AGGAGGCGAAGATGAGGTGG+AGG | + | tig0039114:949-968 | Msa1457780:intergenic | 60.0% | |
| GTGAGGAGGCGAAGATGAGG+TGG | + | tig0039114:952-971 | Msa1457780:intergenic | 60.0% | |
| ! | GCACTGACACCTCGGATTGG+AGG | + | tig0039114:2526-2545 | Msa1457780:intergenic | 60.0% |
| AGTGTCCACGCGCACTTGTG+CGG | - | tig0039114:2816-2835 | Msa1457780:CDS | 60.0% | |
| CGGGTTTGGGTATGGGTTCG+GGG | - | tig0039114:3155-3174 | Msa1457780:intron | 60.0% | |
| GTTTGGGTATGGGTTCGGGG+TGG | - | tig0039114:3158-3177 | Msa1457780:intron | 60.0% | |
| !! | GGGACGGGTAACGGGGATAT+AGG | + | tig0039114:3187-3206 | Msa1457780:intergenic | 60.0% |
| TGGGTATGGGACGGGTAACG+GGG | + | tig0039114:3194-3213 | Msa1457780:intergenic | 60.0% | |
| !! | TTGGTTCGGGCTGGTACCCA+CGG | - | tig0039114:3275-3294 | Msa1457780:intron | 60.0% |
| GGGACAAAAGATGGGGGGCA+TGG | + | tig0039114:3316-3335 | Msa1457780:intergenic | 60.0% | |
| AGGAAGACGGATGCCGCCGT+CGG | + | tig0039114:741-760 | Msa1457780:intergenic | 65.0% | |
| AATAAAGCCGCCGACGCCGC+CGG | - | tig0039114:999-1018 | Msa1457780:three_prime_UTR | 65.0% | |
| GATGACATCTCCGGCGGCGT+CGG | + | tig0039114:1012-1031 | Msa1457780:intergenic | 65.0% | |
| TCTGGTGCGCTCGACTGCAC+AGG | + | tig0039114:1504-1523 | Msa1457780:intergenic | 65.0% | |
| AAGGTCCGCACAAGTGCGCG+TGG | + | tig0039114:2824-2843 | Msa1457780:intergenic | 65.0% | |
| !! | TGGTTCGGGCTGGTACCCAC+GGG | - | tig0039114:3276-3295 | Msa1457780:intron | 65.0% |
| TCGCAGCCCGAGGGAAAAGG+CGG | + | tig0039114:3686-3705 | Msa1457780:intergenic | 65.0% | |
| CAGTCGCAGCCCGAGGGAAA+AGG | + | tig0039114:3689-3708 | Msa1457780:intergenic | 65.0% | |
| GGTTGTCAGTCGCAGCCCGA+GGG | + | tig0039114:3695-3714 | Msa1457780:intergenic | 65.0% | |
| ACGGATGCCGCCGTCGGAGA+AGG | + | tig0039114:735-754 | Msa1457780:intergenic | 70.0% | |
| CTGCGGTGCGGTCGTTGGAG+AGG | + | tig0039114:761-780 | Msa1457780:intergenic | 70.0% | |
| GGGTTGTCAGTCGCAGCCCG+AGG | + | tig0039114:3696-3715 | Msa1457780:intergenic | 70.0% | |
| ! | GACATCTCCGGCGGCGTCGG+CGG | + | tig0039114:1009-1028 | Msa1457780:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039114 | gene | 654 | 5241 | 654 | ID=Msa1457780;Name=Msa1457780 |
| tig0039114 | mRNA | 654 | 5241 | 654 | ID=Msa1457780-mRNA-1;Parent=Msa1457780;Name=Msa1457780-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.81|0.90|0.9|0.81|11|425|402 |
| tig0039114 | exon | 654 | 718 | 654 | ID=Msa1457780-mRNA-1:exon:21386;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 780 | 1207 | 780 | ID=Msa1457780-mRNA-1:exon:21385;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 1578 | 1689 | 1578 | ID=Msa1457780-mRNA-1:exon:21384;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 1846 | 1935 | 1846 | ID=Msa1457780-mRNA-1:exon:21383;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 2788 | 2854 | 2788 | ID=Msa1457780-mRNA-1:exon:21382;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 3038 | 3162 | 3038 | ID=Msa1457780-mRNA-1:exon:21381;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 3649 | 3698 | 3649 | ID=Msa1457780-mRNA-1:exon:21380;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 3799 | 3893 | 3799 | ID=Msa1457780-mRNA-1:exon:21379;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 4293 | 4385 | 4293 | ID=Msa1457780-mRNA-1:exon:21378;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 4637 | 4715 | 4637 | ID=Msa1457780-mRNA-1:exon:21377;Parent=Msa1457780-mRNA-1 |
| tig0039114 | exon | 4812 | 5241 | 4812 | ID=Msa1457780-mRNA-1:exon:21376;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 4812 | 5241 | 4812 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 4637 | 4715 | 4637 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 4293 | 4385 | 4293 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 3799 | 3893 | 3799 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 3649 | 3698 | 3649 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 3038 | 3162 | 3038 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 2788 | 2854 | 2788 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 1846 | 1935 | 1846 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 1578 | 1689 | 1578 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | CDS | 1140 | 1207 | 1140 | ID=Msa1457780-mRNA-1:cds;Parent=Msa1457780-mRNA-1 |
| tig0039114 | three_prime_UTR | 780 | 1139 | 780 | ID=Msa1457780-mRNA-1:three_prime_utr;Parent=Msa1457780-mRNA-1 |
| tig0039114 | three_prime_UTR | 654 | 718 | 654 | ID=Msa1457780-mRNA-1:three_prime_utr;Parent=Msa1457780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
