Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425480 | XP_003591828.2 | 85.124 | 484 | 24 | 2 | 7 | 450 | 6 | 481 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425480 | sp|Q6NQK2|NAC8_ARATH | 50.620 | 484 | 156 | 12 | 8 | 448 | 5 | 448 | 1.09e-144 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425480 | G7I498 | 85.124 | 484 | 24 | 2 | 7 | 450 | 6 | 481 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1425480 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036740 | Msa1425480 | 0.851094 | 1.110117e-60 | -8.615850e-47 |
| Msa0130480 | Msa1425480 | 0.883193 | 5.518194e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425480 | MtrunA17_Chr1g0198751 | 85.124 | 484 | 24 | 2 | 7 | 450 | 6 | 481 | 0.0 | 838 |
| Msa1425480 | MtrunA17_Chr5g0422431 | 60.797 | 477 | 123 | 6 | 4 | 449 | 1 | 444 | 0.0 | 553 |
| Msa1425480 | MtrunA17_Chr1g0198741 | 61.145 | 332 | 76 | 6 | 115 | 444 | 8 | 288 | 4.14e-125 | 365 |
| Msa1425480 | MtrunA17_Chr7g0227071 | 56.075 | 214 | 92 | 1 | 9 | 220 | 5 | 218 | 2.20e-83 | 265 |
| Msa1425480 | MtrunA17_Chr8g0389661 | 59.162 | 191 | 68 | 4 | 37 | 219 | 27 | 215 | 1.11e-73 | 239 |
| Msa1425480 | MtrunA17_Chr2g0282871 | 53.363 | 223 | 101 | 2 | 33 | 252 | 25 | 247 | 1.92e-73 | 233 |
| Msa1425480 | MtrunA17_Chr4g0046431 | 58.115 | 191 | 77 | 2 | 37 | 224 | 44 | 234 | 5.01e-71 | 227 |
| Msa1425480 | MtrunA17_Chr8g0367761 | 58.333 | 180 | 72 | 2 | 37 | 213 | 44 | 223 | 1.65e-67 | 216 |
| Msa1425480 | MtrunA17_Chr4g0040541 | 55.729 | 192 | 80 | 2 | 38 | 224 | 24 | 215 | 1.88e-67 | 217 |
| Msa1425480 | MtrunA17_Chr2g0324961 | 57.068 | 191 | 78 | 2 | 38 | 224 | 25 | 215 | 4.07e-63 | 206 |
| Msa1425480 | MtrunA17_Chr4g0047841 | 33.537 | 164 | 85 | 8 | 57 | 214 | 13 | 158 | 6.19e-12 | 66.6 |
| Msa1425480 | MtrunA17_Chr2g0318101 | 34.177 | 158 | 79 | 9 | 48 | 199 | 5 | 143 | 8.62e-12 | 66.2 |
| Msa1425480 | MtrunA17_Chr8g0359921 | 34.043 | 141 | 77 | 6 | 59 | 198 | 14 | 139 | 2.08e-11 | 65.1 |
| Msa1425480 | MtrunA17_Chr3g0124761 | 34.722 | 144 | 73 | 7 | 59 | 199 | 7 | 132 | 3.58e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425480 | AT1G25580.1 | 50.620 | 484 | 156 | 12 | 8 | 448 | 5 | 448 | 1.11e-145 | 423 |
| Msa1425480 | AT3G01600.1 | 55.556 | 225 | 95 | 3 | 8 | 230 | 4 | 225 | 5.22e-81 | 255 |
| Msa1425480 | AT5G14490.2 | 50.000 | 246 | 114 | 3 | 8 | 251 | 4 | 242 | 1.54e-77 | 243 |
| Msa1425480 | AT5G14490.4 | 50.000 | 246 | 114 | 3 | 8 | 251 | 4 | 242 | 1.95e-77 | 245 |
| Msa1425480 | AT5G14490.1 | 50.000 | 246 | 114 | 3 | 8 | 251 | 7 | 245 | 2.31e-77 | 245 |
| Msa1425480 | AT5G14490.3 | 50.000 | 246 | 114 | 3 | 8 | 251 | 7 | 245 | 4.75e-77 | 244 |
| Msa1425480 | AT4G29230.3 | 58.333 | 192 | 69 | 3 | 37 | 219 | 28 | 217 | 6.66e-76 | 244 |
| Msa1425480 | AT4G29230.1 | 58.333 | 192 | 69 | 3 | 37 | 219 | 28 | 217 | 2.99e-75 | 244 |
| Msa1425480 | AT4G29230.2 | 57.812 | 192 | 69 | 3 | 37 | 219 | 28 | 216 | 2.95e-74 | 241 |
| Msa1425480 | AT1G28470.1 | 53.110 | 209 | 92 | 2 | 22 | 224 | 35 | 243 | 6.62e-71 | 227 |
| Msa1425480 | AT5G56620.3 | 54.592 | 196 | 74 | 4 | 37 | 219 | 22 | 215 | 5.49e-69 | 225 |
| Msa1425480 | AT5G56620.2 | 54.592 | 196 | 74 | 4 | 37 | 219 | 22 | 215 | 5.77e-69 | 225 |
| Msa1425480 | AT5G56620.1 | 54.592 | 196 | 74 | 4 | 37 | 219 | 22 | 215 | 1.02e-68 | 224 |
| Msa1425480 | AT4G28500.1 | 54.450 | 191 | 83 | 2 | 38 | 224 | 36 | 226 | 3.69e-67 | 217 |
| Msa1425480 | AT1G01720.1 | 36.111 | 144 | 71 | 7 | 59 | 199 | 7 | 132 | 1.05e-12 | 68.9 |
| Msa1425480 | AT1G33060.2 | 30.588 | 170 | 90 | 8 | 58 | 217 | 23 | 174 | 6.85e-11 | 65.1 |
| Msa1425480 | AT1G33060.1 | 30.588 | 170 | 90 | 8 | 58 | 217 | 23 | 174 | 7.26e-11 | 64.7 |
| Msa1425480 | AT1G02230.1 | 29.825 | 171 | 96 | 8 | 60 | 223 | 4 | 157 | 8.19e-11 | 63.9 |
Find 97 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATGTGGTCAAGATTT+TGG | 0.149918 | tig0025858:+5710 | Msa1425480:CDS |
| CAGTGTCAAGGTTGAGATTT+TGG | 0.158446 | tig0025858:-7135 | Msa1425480:intergenic |
| ATTTATCACTACTCTTAAAA+TGG | 0.223272 | tig0025858:+5484 | Msa1425480:CDS |
| CTTTCTGTATATGCTCATTT+AGG | 0.224428 | tig0025858:+6983 | Msa1425480:CDS |
| CCAGCAGCAGCAAGCCAAAT+TGG | 0.225006 | tig0025858:+5937 | Msa1425480:CDS |
| TCGATAACATGTTGACAATT+TGG | 0.240409 | tig0025858:-3341 | Msa1425480:intergenic |
| CAGTGTCAGCGTCAAGATTA+AGG | 0.257120 | tig0025858:-7087 | Msa1425480:intergenic |
| CCGAGGTTTCAGGAACATTT+TGG | 0.262495 | tig0025858:-5973 | Msa1425480:intergenic |
| ACAGTTGCTTCCGAGGTTTC+AGG | 0.268678 | tig0025858:-5983 | Msa1425480:intergenic |
| CTTTCGGCTTCCAGTATTAT+AGG | 0.275483 | tig0025858:-5681 | Msa1425480:intergenic |
| TATGATGAGATTCTTGTTCT+TGG | 0.289036 | tig0025858:-6084 | Msa1425480:intergenic |
| CGATAACATGTTGACAATTT+GGG | 0.296736 | tig0025858:-3340 | Msa1425480:intergenic |
| CATCTGATCAAGAGATAATA+TGG | 0.323541 | tig0025858:+5405 | Msa1425480:CDS |
| GCAATCAAAGCCTATAATAC+TGG | 0.327546 | tig0025858:+5671 | Msa1425480:CDS |
| TTCTCATTGCGAGGAGGTTC+AGG | 0.331317 | tig0025858:-6043 | Msa1425480:intergenic |
| TATAGGCTTTGATTGCTCTA+TGG | 0.349409 | tig0025858:-5664 | Msa1425480:intergenic |
| AGGTTCAGGCGTCACGGAAT+TGG | 0.365916 | tig0025858:-6029 | Msa1425480:intergenic |
| GAGGATAGGTTTAGTCCTTC+CGG | 0.373927 | tig0025858:-5753 | Msa1425480:intergenic |
| AGATTCTACCAGATCTTTCT+CGG | 0.381982 | tig0025858:+6735 | Msa1425480:intron |
| GGTTCAGGCGTCACGGAATT+GGG | 0.400382 | tig0025858:-6028 | Msa1425480:intergenic |
| GAAAAGCTGAGAAAACTAAC+TGG | 0.402325 | tig0025858:+5840 | Msa1425480:CDS |
| CCAATTTGGCTTGCTGCTGC+TGG | 0.410429 | tig0025858:-5937 | Msa1425480:intergenic |
| CAGATCTTTCTCGGTTAGAA+TGG | 0.419534 | tig0025858:+6744 | Msa1425480:CDS |
| CGACATTCGATTAAGTCAAC+TGG | 0.441693 | tig0025858:+7186 | Msa1425480:CDS |
| TGGAACAGAAGAGGATGAAA+AGG | 0.444567 | tig0025858:+5883 | Msa1425480:CDS |
| ATAGAAACTCAAACTAATGA+AGG | 0.445370 | tig0025858:+6821 | Msa1425480:CDS |
| CAGCAGCAGCAAGCCAAATT+GGG | 0.449148 | tig0025858:+5938 | Msa1425480:CDS |
| AGAATGGCTACTTGAAAGTC+AGG | 0.455673 | tig0025858:+6760 | Msa1425480:CDS |
| TGGGGAAAACGGAGAGCAAA+TGG | 0.462093 | tig0025858:+6949 | Msa1425480:CDS |
| AGCATTGATTACAGCTTGGT+TGG | 0.465067 | tig0025858:-7465 | Msa1425480:intergenic |
| TTCAGAGCCAGTCTCCGAAA+AGG | 0.466169 | tig0025858:+6924 | Msa1425480:CDS |
| CATCCTCTTCTGTTCCAAGA+TGG | 0.472200 | tig0025858:-5877 | Msa1425480:intergenic |
| TTGACAATTTGGGCAAGCTC+TGG | 0.472858 | tig0025858:-3330 | Msa1425480:intergenic |
| CGTCGTGGTTGGTGGACAAA+AGG | 0.474826 | tig0025858:+3240 | Msa1425480:CDS |
| CTAAACCTATCCTCTTGAAC+GGG | 0.489073 | tig0025858:+5762 | Msa1425480:CDS |
| GCCAGTCTCCGAAAAGGGAT+GGG | 0.491139 | tig0025858:+6930 | Msa1425480:CDS |
| GGAAGCAACTGTTATAAAAG+TGG | 0.494051 | tig0025858:+5994 | Msa1425480:CDS |
| CATTCTAACCGAGAAAGATC+TGG | 0.494095 | tig0025858:-6743 | Msa1425480:intergenic |
| CACAGGATAGTTACGTTGCG+TGG | 0.494301 | tig0025858:+7325 | Msa1425480:CDS |
| ACTCATCCTCAGCGTTTACC+AGG | 0.499467 | tig0025858:+5524 | Msa1425480:CDS |
| TAAATTCATCGATGAATGGA+TGG | 0.502555 | tig0025858:-5466 | Msa1425480:intergenic |
| AATTCAATAAATTCTGCGAC+AGG | 0.503431 | tig0025858:-6859 | Msa1425480:intergenic |
| AATGTAGGTGTTTCGCGAGA+TGG | 0.508052 | tig0025858:+5623 | Msa1425480:intron |
| CTGAAAGAAATCTGCGAACA+AGG | 0.508582 | tig0025858:-6906 | Msa1425480:intergenic |
| GACGTCCGCTGGCACAAGAC+CGG | 0.509302 | tig0025858:+5734 | Msa1425480:CDS |
| GTTATGCATCAATACCATCT+TGG | 0.511788 | tig0025858:+5863 | Msa1425480:CDS |
| ATGTAGACCGTCGTGGTTGG+TGG | 0.513068 | tig0025858:+3232 | Msa1425480:CDS |
| TTAACACCTCTAGGTAATCC+AGG | 0.513694 | tig0025858:-5374 | Msa1425480:intergenic |
| CCGAAAAGGGATGGGGAAAA+CGG | 0.514006 | tig0025858:+6938 | Msa1425480:CDS |
| ACTACTCTTAAAATGGATGA+TGG | 0.516095 | tig0025858:+5491 | Msa1425480:CDS |
| TCAGAGCCAGTCTCCGAAAA+GGG | 0.517995 | tig0025858:+6925 | Msa1425480:CDS |
| AGAAAGCATTGATTACAGCT+TGG | 0.522495 | tig0025858:-7469 | Msa1425480:intergenic |
| ACAGGATAGTTACGTTGCGT+GGG | 0.526850 | tig0025858:+7326 | Msa1425480:CDS |
| GTGATAAATTCATCGATGAA+TGG | 0.527452 | tig0025858:-5470 | Msa1425480:intergenic |
| CCAAAATGTTCCTGAAACCT+CGG | 0.528119 | tig0025858:+5973 | Msa1425480:CDS |
| ACAGAAGAGGATGAAAAGGA+TGG | 0.529217 | tig0025858:+5887 | Msa1425480:CDS |
| TAGGTAACACAAGAGTGGCC+TGG | 0.532893 | tig0025858:+5356 | Msa1425480:intron |
| AGCCAGTCTCCGAAAAGGGA+TGG | 0.533326 | tig0025858:+6929 | Msa1425480:CDS |
| CATATTATCTCTTGATCAGA+TGG | 0.535616 | tig0025858:-5404 | Msa1425480:intergenic |
| TTAATAGGAATTCAGCTCAC+AGG | 0.535810 | tig0025858:+7308 | Msa1425480:intron |
| TGGCACTTGCTTGCAAAAGT+TGG | 0.539348 | tig0025858:+5425 | Msa1425480:CDS |
| TAGAAACTCAAACTAATGAA+GGG | 0.541977 | tig0025858:+6822 | Msa1425480:CDS |
| AGAATCTCATCATAGTCCTC+AGG | 0.542768 | tig0025858:+6093 | Msa1425480:CDS |
| TCCTTCCGGTCTTGTGCCAG+CGG | 0.547113 | tig0025858:-5739 | Msa1425480:intergenic |
| CTTTCTGAAGCCCGTTCAAG+AGG | 0.552172 | tig0025858:-5772 | Msa1425480:intergenic |
| GCTCTACATTTGCAGTGTCA+AGG | 0.556566 | tig0025858:-7147 | Msa1425480:intergenic |
| CTCTTGAACGGGCTTCAGAA+AGG | 0.560131 | tig0025858:+5773 | Msa1425480:CDS |
| AAATTCATCGATGAATGGAT+GGG | 0.565244 | tig0025858:-5465 | Msa1425480:intergenic |
| TGAAGCCCGTTCAAGAGGAT+AGG | 0.565498 | tig0025858:-5767 | Msa1425480:intergenic |
| GTCACGGAATTGGGAGTGAC+TGG | 0.565831 | tig0025858:-6019 | Msa1425480:intergenic |
| CAATTTGGGCAAGCTCTGGT+AGG | 0.567523 | tig0025858:-3326 | Msa1425480:intergenic |
| GGATCAAATTTAACACCTCT+AGG | 0.573417 | tig0025858:-5383 | Msa1425480:intergenic |
| TTGCTTGCAAAAGTTGGTGA+AGG | 0.575602 | tig0025858:+5431 | Msa1425480:CDS |
| CCAGTCTCCGAAAAGGGATG+GGG | 0.581156 | tig0025858:+6931 | Msa1425480:CDS |
| GAACATTGCTTCTCATTGCG+AGG | 0.584286 | tig0025858:-6052 | Msa1425480:intergenic |
| ACTAAACCTATCCTCTTGAA+CGG | 0.585397 | tig0025858:+5761 | Msa1425480:CDS |
| CTTGTATATGTAGACCGTCG+TGG | 0.591109 | tig0025858:+3225 | Msa1425480:CDS |
| CTTTATATGACTCCAGAGAG+TGG | 0.599269 | tig0025858:+5815 | Msa1425480:CDS |
| TCCGCTGGCACAAGACCGGA+AGG | 0.600544 | tig0025858:+5738 | Msa1425480:CDS |
| GCGAGGAGGTTCAGGCGTCA+CGG | 0.600720 | tig0025858:-6035 | Msa1425480:intergenic |
| AATTCACAGCAACTTGCGGA+AGG | 0.600786 | tig0025858:+6878 | Msa1425480:CDS |
| TGACTTAATCGAATGTCGGA+AGG | 0.609614 | tig0025858:-7181 | Msa1425480:intergenic |
| CAGTTGACTTAATCGAATGT+CGG | 0.615405 | tig0025858:-7185 | Msa1425480:intergenic |
| TATATGTAGACCGTCGTGGT+TGG | 0.621640 | tig0025858:+3229 | Msa1425480:CDS |
| AATTCATCGATGAATGGATG+GGG | 0.621875 | tig0025858:-5464 | Msa1425480:intergenic |
| CATTGCTTCTCATTGCGAGG+AGG | 0.622091 | tig0025858:-6049 | Msa1425480:intergenic |
| ATTGAATTCACAGCAACTTG+CGG | 0.627276 | tig0025858:+6874 | Msa1425480:CDS |
| GTTGTTAGGTAACACAAGAG+TGG | 0.628897 | tig0025858:+5351 | Msa1425480:intron |
| GATAGTTACGTTGCGTGGGG+TGG | 0.628949 | tig0025858:+7330 | Msa1425480:CDS |
| AAAAGCTGAGAAAACTAACT+GGG | 0.630819 | tig0025858:+5841 | Msa1425480:CDS |
| ATACCATCTTGGAACAGAAG+AGG | 0.631271 | tig0025858:+5874 | Msa1425480:CDS |
| AGAAACTCAAACTAATGAAG+GGG | 0.644054 | tig0025858:+6823 | Msa1425480:CDS |
| TGAGCATATACAGAAAGACT+AGG | 0.654781 | tig0025858:-6977 | Msa1425480:intergenic |
| CAGGATAGTTACGTTGCGTG+GGG | 0.662213 | tig0025858:+7327 | Msa1425480:CDS |
| GAGTGGCCTGGATTACCTAG+AGG | 0.709350 | tig0025858:+5368 | Msa1425480:CDS |
| AGTCCACCTGGTAAACGCTG+AGG | 0.726794 | tig0025858:-5530 | Msa1425480:intergenic |
| TATATGACTCCAGAGAGTGG+AGG | 0.733666 | tig0025858:+5818 | Msa1425480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATGAATTTAATGTAA+TGG | - | tig0025858:7236-7255 | Msa1425480:intergenic | 10.0% |
| !!! | TATATATCAGTGATATTTTA+TGG | + | tig0025858:3568-3587 | Msa1425480:intron | 15.0% |
| !! | TCTATCATTATGTAAATAAT+AGG | - | tig0025858:3880-3899 | Msa1425480:intergenic | 15.0% |
| !! | AATCATTAAGAATTATTTAG+AGG | + | tig0025858:4689-4708 | Msa1425480:intron | 15.0% |
| !! | ATCAAAAAAAAATTAAGTGT+TGG | + | tig0025858:4835-4854 | Msa1425480:intron | 15.0% |
| !!! | GAAATATGTTATTTAATTTC+TGG | + | tig0025858:4991-5010 | Msa1425480:intron | 15.0% |
| !! | TTAAGAATTTATTTCAATGA+AGG | - | tig0025858:6500-6519 | Msa1425480:intergenic | 15.0% |
| !!! | GCTTGTTTTTTTTTTTTAAT+AGG | + | tig0025858:7293-7312 | Msa1425480:intron | 15.0% |
| !! | ATAAGAAAATTAAGACAAGT+AGG | - | tig0025858:3518-3537 | Msa1425480:intergenic | 20.0% |
| !! | AATAAATTCAACTTATGATG+GGG | - | tig0025858:4123-4142 | Msa1425480:intergenic | 20.0% |
| !! | CAATAAATTCAACTTATGAT+GGG | - | tig0025858:4124-4143 | Msa1425480:intergenic | 20.0% |
| !! | TCAATAAATTCAACTTATGA+TGG | - | tig0025858:4125-4144 | Msa1425480:intergenic | 20.0% |
| !! | CTTTGAATCAAATACATTAA+AGG | + | tig0025858:4724-4743 | Msa1425480:intron | 20.0% |
| !!! | AATTAAGTGTTGGAAAAAAA+AGG | + | tig0025858:4845-4864 | Msa1425480:intron | 20.0% |
| !! | AAATTAATGCACAGAATATA+TGG | - | tig0025858:4892-4911 | Msa1425480:intergenic | 20.0% |
| !!! | TATGTTATTTAATTTCTGGA+AGG | + | tig0025858:4995-5014 | Msa1425480:intron | 20.0% |
| !!! | AAAAATGCCAATAAACTTTT+AGG | - | tig0025858:5234-5253 | Msa1425480:intergenic | 20.0% |
| !!! | TTTCAAAGTTTTATGTTGTT+AGG | + | tig0025858:5337-5356 | Msa1425480:intron | 20.0% |
| !! | ATTTATCACTACTCTTAAAA+TGG | + | tig0025858:5484-5503 | Msa1425480:CDS | 20.0% |
| !! | GCTATATGATTATAAAATGT+AGG | + | tig0025858:5608-5627 | Msa1425480:intron | 20.0% |
| !!! | TTCCAAATATTTAATTTACC+CGG | + | tig0025858:6362-6381 | Msa1425480:intron | 20.0% |
| !!! | AAGTTGATATTTATTTGATG+TGG | + | tig0025858:6440-6459 | Msa1425480:intron | 20.0% |
| !! | AAAGCTGGTATTAAAAAATA+AGG | - | tig0025858:6591-6610 | Msa1425480:intergenic | 20.0% |
| !!! | GTGTTTAAATTTGATAGTTT+TGG | + | tig0025858:6637-6656 | Msa1425480:intron | 20.0% |
| !! | AAGAACAAAATTATCAACAT+AGG | - | tig0025858:6697-6716 | Msa1425480:intergenic | 20.0% |
| !!! | AATGAATTTAATGTAATGGA+AGG | - | tig0025858:7232-7251 | Msa1425480:intergenic | 20.0% |
| !! | AACTAGAAAAAGTGTAGATT+AGG | + | tig0025858:3652-3671 | Msa1425480:intron | 25.0% |
| ! | CATTATAGTAGATTCAACTA+AGG | - | tig0025858:3678-3697 | Msa1425480:intergenic | 25.0% |
| ! | CTATAATGAAAGAAAAAGTG+AGG | + | tig0025858:3690-3709 | Msa1425480:intron | 25.0% |
| !!! | ATAATTGTTTTAGAACCATG+GGG | - | tig0025858:4307-4326 | Msa1425480:intergenic | 25.0% |
| !!! | GATAATTGTTTTAGAACCAT+GGG | - | tig0025858:4308-4327 | Msa1425480:intergenic | 25.0% |
| !! | AATCTCTTTTATCCAACATT+TGG | - | tig0025858:4444-4463 | Msa1425480:intergenic | 25.0% |
| !!! | AACACTTTTTTCCTTCTAAA+TGG | + | tig0025858:4510-4529 | Msa1425480:intron | 25.0% |
| !!! | ACACTTTTTTCCTTCTAAAT+GGG | + | tig0025858:4511-4530 | Msa1425480:intron | 25.0% |
| ! | TATCGTGTATTACATCAAAT+GGG | - | tig0025858:4552-4571 | Msa1425480:intergenic | 25.0% |
| ! | CTATTGATCTATCACTTATT+TGG | - | tig0025858:4632-4651 | Msa1425480:intergenic | 25.0% |
| ! | CAATTACTTTCTCATTCATA+GGG | - | tig0025858:4783-4802 | Msa1425480:intergenic | 25.0% |
| ! | TCAATTACTTTCTCATTCAT+AGG | - | tig0025858:4784-4803 | Msa1425480:intergenic | 25.0% |
| ! | ATGAGAAAGTAATTGATTGT+TGG | + | tig0025858:4788-4807 | Msa1425480:intron | 25.0% |
| !! | ATTTCGTCTAAAATCACATT+AGG | + | tig0025858:4908-4927 | Msa1425480:intron | 25.0% |
| ! | ATTTGTATCGTTCAATTTCT+TGG | + | tig0025858:4933-4952 | Msa1425480:intron | 25.0% |
| ! | TTTGTATCGTTCAATTTCTT+GGG | + | tig0025858:4934-4953 | Msa1425480:intron | 25.0% |
| !! | TTATTTAATTTCTGGAAGGA+AGG | + | tig0025858:4999-5018 | Msa1425480:intron | 25.0% |
| ! | ACTATATACAAGACATCAAT+CGG | + | tig0025858:5083-5102 | Msa1425480:intron | 25.0% |
| ! | GTATCACTGTTATAAAAACA+GGG | - | tig0025858:5180-5199 | Msa1425480:intergenic | 25.0% |
| ! | AGTATCACTGTTATAAAAAC+AGG | - | tig0025858:5181-5200 | Msa1425480:intergenic | 25.0% |
| !!! | GTCTAAGCTTTATTCAAATT+TGG | + | tig0025858:5553-5572 | Msa1425480:intron | 25.0% |
| !!! | AAGCTTTATTCAAATTTGGA+TGG | + | tig0025858:5557-5576 | Msa1425480:intron | 25.0% |
| !! | AAAATATGTGGTCAAGATTT+TGG | + | tig0025858:5710-5729 | Msa1425480:CDS | 25.0% |
| !!! | TGTATGTTTTCCTTTGTTTT+TGG | + | tig0025858:6145-6164 | Msa1425480:intron | 25.0% |
| !!! | AACGTTTTAAGCATTTAATG+TGG | + | tig0025858:6250-6269 | Msa1425480:intron | 25.0% |
| ! | AACCGGGTAAATTAAATATT+TGG | - | tig0025858:6367-6386 | Msa1425480:intergenic | 25.0% |
| ! | ATCAGCATAATTCATTAAAC+CGG | - | tig0025858:6384-6403 | Msa1425480:intergenic | 25.0% |
| !!! | ATTATGCTGATTTGATTAGA+AGG | + | tig0025858:6393-6412 | Msa1425480:intron | 25.0% |
| ! | TTGATATTTATTTGATGTGG+TGG | + | tig0025858:6443-6462 | Msa1425480:intron | 25.0% |
| !!! | TTTTTAATACCAGCTTTGAA+TGG | + | tig0025858:6594-6613 | Msa1425480:intron | 25.0% |
| !!! | TTTTAATACCAGCTTTGAAT+GGG | + | tig0025858:6595-6614 | Msa1425480:intron | 25.0% |
| ! | ATAGAAACTCAAACTAATGA+AGG | + | tig0025858:6821-6840 | Msa1425480:CDS | 25.0% |
| ! | TAGAAACTCAAACTAATGAA+GGG | + | tig0025858:6822-6841 | Msa1425480:CDS | 25.0% |
| ! | CATCACAAATAGAGAAAATT+TGG | - | tig0025858:7269-7288 | Msa1425480:intergenic | 25.0% |
| !!! | ATTTTGCAATTTTGAAGTAG+TGG | + | tig0025858:7427-7446 | Msa1425480:three_prime_UTR | 25.0% |
| AAGCAACCGAAAAAGTTATA+TGG | + | tig0025858:3294-3313 | Msa1425480:CDS | 30.0% | |
| AGCAACCGAAAAAGTTATAT+GGG | + | tig0025858:3295-3314 | Msa1425480:CDS | 30.0% | |
| ! | GCTTTCCCATATAACTTTTT+CGG | - | tig0025858:3303-3322 | Msa1425480:intergenic | 30.0% |
| CGATAACATGTTGACAATTT+GGG | - | tig0025858:3343-3362 | Msa1425480:intergenic | 30.0% | |
| TCGATAACATGTTGACAATT+TGG | - | tig0025858:3344-3363 | Msa1425480:intergenic | 30.0% | |
| TGCTTTCAATTGTATTTCAG+TGG | + | tig0025858:3402-3421 | Msa1425480:intron | 30.0% | |
| CACTTAATCCTCTTTAAGTA+GGG | + | tig0025858:3842-3861 | Msa1425480:intron | 30.0% | |
| ! | AATAGATTCAGGAATTTTCC+TGG | - | tig0025858:4163-4182 | Msa1425480:intergenic | 30.0% |
| !! | GAATAAACTTTGAGATGAAG+TGG | - | tig0025858:4269-4288 | Msa1425480:intergenic | 30.0% |
| !!! | GGATAATTGTTTTAGAACCA+TGG | - | tig0025858:4309-4328 | Msa1425480:intergenic | 30.0% |
| AAGAGATTGCACAAACAATT+AGG | + | tig0025858:4456-4475 | Msa1425480:intron | 30.0% | |
| !! | TAGAAGGAAAAAAGTGTTTC+TGG | - | tig0025858:4508-4527 | Msa1425480:intergenic | 30.0% |
| CTATCGTGTATTACATCAAA+TGG | - | tig0025858:4553-4572 | Msa1425480:intergenic | 30.0% | |
| AGATCAATAGTTAGAGATAG+AGG | + | tig0025858:4642-4661 | Msa1425480:intron | 30.0% | |
| GATCAATAGTTAGAGATAGA+GGG | + | tig0025858:4643-4662 | Msa1425480:intron | 30.0% | |
| TTGGTTGACATATTACACAA+TGG | + | tig0025858:4807-4826 | Msa1425480:intron | 30.0% | |
| ! | AGTGTTGGAAAAAAAAGGAA+CGG | + | tig0025858:4850-4869 | Msa1425480:intron | 30.0% |
| TTGTATCGTTCAATTTCTTG+GGG | + | tig0025858:4935-4954 | Msa1425480:intron | 30.0% | |
| ATAAGAAACTGCATGGAAAT+AGG | - | tig0025858:5042-5061 | Msa1425480:intergenic | 30.0% | |
| AGTTACAATAAGAAACTGCA+TGG | - | tig0025858:5049-5068 | Msa1425480:intergenic | 30.0% | |
| GATTGATGTCTTGTATATAG+TGG | - | tig0025858:5084-5103 | Msa1425480:intergenic | 30.0% | |
| TATCTGTGACTTCAGATATA+AGG | - | tig0025858:5206-5225 | Msa1425480:intergenic | 30.0% | |
| TACCTGTCCTAAAAGTTTAT+TGG | + | tig0025858:5224-5243 | Msa1425480:intron | 30.0% | |
| CATATTATCTCTTGATCAGA+TGG | - | tig0025858:5407-5426 | Msa1425480:intergenic | 30.0% | |
| CATCTGATCAAGAGATAATA+TGG | + | tig0025858:5405-5424 | Msa1425480:CDS | 30.0% | |
| AAATTCATCGATGAATGGAT+GGG | - | tig0025858:5468-5487 | Msa1425480:intergenic | 30.0% | |
| TAAATTCATCGATGAATGGA+TGG | - | tig0025858:5469-5488 | Msa1425480:intergenic | 30.0% | |
| GTGATAAATTCATCGATGAA+TGG | - | tig0025858:5473-5492 | Msa1425480:intergenic | 30.0% | |
| ACTACTCTTAAAATGGATGA+TGG | + | tig0025858:5491-5510 | Msa1425480:CDS | 30.0% | |
| GAAAGGCTGTAAAAAGATTA+TGG | + | tig0025858:5790-5809 | Msa1425480:CDS | 30.0% | |
| AAAAGCTGAGAAAACTAACT+GGG | + | tig0025858:5841-5860 | Msa1425480:CDS | 30.0% | |
| TATGATGAGATTCTTGTTCT+TGG | - | tig0025858:6087-6106 | Msa1425480:intergenic | 30.0% | |
| ATACAACACGAAAATGTTAG+TGG | - | tig0025858:6130-6149 | Msa1425480:intergenic | 30.0% | |
| !!! | TTTTCCTTTGTTTTTGGAAG+AGG | + | tig0025858:6151-6170 | Msa1425480:intron | 30.0% |
| !!! | TTTCCTTTGTTTTTGGAAGA+GGG | + | tig0025858:6152-6171 | Msa1425480:intron | 30.0% |
| AGATGTTAAACTCATAATGC+TGG | + | tig0025858:6300-6319 | Msa1425480:intron | 30.0% | |
| TCTGACACAATATTCATTTG+TGG | + | tig0025858:6333-6352 | Msa1425480:intron | 30.0% | |
| TCAGCATAATTCATTAAACC+GGG | - | tig0025858:6383-6402 | Msa1425480:intergenic | 30.0% | |
| ATTTATTTCAATGAAGGCAG+CGG | - | tig0025858:6494-6513 | Msa1425480:intergenic | 30.0% | |
| ! | TGTACTGTATAGTTTAGCTT+AGG | + | tig0025858:6543-6562 | Msa1425480:intron | 30.0% |
| AGAAACTCAAACTAATGAAG+GGG | + | tig0025858:6823-6842 | Msa1425480:CDS | 30.0% | |
| AATTCAATAAATTCTGCGAC+AGG | - | tig0025858:6862-6881 | Msa1425480:intergenic | 30.0% | |
| CTTTCTGTATATGCTCATTT+AGG | + | tig0025858:6983-7002 | Msa1425480:CDS | 30.0% | |
| AAGTAGGAAACTAGACATGA+AGG | - | tig0025858:3502-3521 | Msa1425480:intergenic | 35.0% | |
| AAAGAAAAAGTGAGGTCTCT+TGG | + | tig0025858:3698-3717 | Msa1425480:intron | 35.0% | |
| GGGATAATAGGTATGCATTT+GGG | - | tig0025858:3776-3795 | Msa1425480:intergenic | 35.0% | |
| TGGGATAATAGGTATGCATT+TGG | - | tig0025858:3777-3796 | Msa1425480:intergenic | 35.0% | |
| AGTAGTATGACTGGGATAAT+AGG | - | tig0025858:3788-3807 | Msa1425480:intergenic | 35.0% | |
| CCTACTTAAAGAGGATTAAG+TGG | - | tig0025858:3844-3863 | Msa1425480:intergenic | 35.0% | |
| CCACTTAATCCTCTTTAAGT+AGG | + | tig0025858:3841-3860 | Msa1425480:intron | 35.0% | |
| CCTTAAATCCCTACTTAAAG+AGG | - | tig0025858:3853-3872 | Msa1425480:intergenic | 35.0% | |
| CCTCTTTAAGTAGGGATTTA+AGG | + | tig0025858:3850-3869 | Msa1425480:intron | 35.0% | |
| GAAACAAGGTAGATTACAAG+GGG | - | tig0025858:3904-3923 | Msa1425480:intergenic | 35.0% | |
| GGAAACAAGGTAGATTACAA+GGG | - | tig0025858:3905-3924 | Msa1425480:intergenic | 35.0% | |
| TGGAAACAAGGTAGATTACA+AGG | - | tig0025858:3906-3925 | Msa1425480:intergenic | 35.0% | |
| GTTTGAGCAAATTGGAAACA+AGG | - | tig0025858:3918-3937 | Msa1425480:intergenic | 35.0% | |
| GTTAGAGGAACTTTCATCTT+CGG | + | tig0025858:4018-4037 | Msa1425480:intron | 35.0% | |
| ATAAACTGGAGCACGAAAAA+AGG | - | tig0025858:4096-4115 | Msa1425480:intergenic | 35.0% | |
| ! | TATGATGGGGATGAATAAAC+TGG | - | tig0025858:4110-4129 | Msa1425480:intergenic | 35.0% |
| GCAGAAATCTCAATAGATTC+AGG | - | tig0025858:4174-4193 | Msa1425480:intergenic | 35.0% | |
| TTATATGTGTGCCGTGTTAT+GGG | - | tig0025858:4229-4248 | Msa1425480:intergenic | 35.0% | |
| ATTATATGTGTGCCGTGTTA+TGG | - | tig0025858:4230-4249 | Msa1425480:intergenic | 35.0% | |
| TCTTCGATTCAGTTATGACT+GGG | - | tig0025858:4330-4349 | Msa1425480:intergenic | 35.0% | |
| TTCTTCGATTCAGTTATGAC+TGG | - | tig0025858:4331-4350 | Msa1425480:intergenic | 35.0% | |
| GGAACTGATGTGTAAGTTTA+TGG | - | tig0025858:4360-4379 | Msa1425480:intergenic | 35.0% | |
| !! | AAGGAAAAAAGTGTTTCTGG+AGG | - | tig0025858:4505-4524 | Msa1425480:intergenic | 35.0% |
| ! | TGTTGATAAGCCCATTTAGA+AGG | - | tig0025858:4524-4543 | Msa1425480:intergenic | 35.0% |
| AGAATTTCGTCCTATGTGAT+GGG | + | tig0025858:4573-4592 | Msa1425480:intron | 35.0% | |
| TACTTTCTCATTCATAGGGT+TGG | - | tig0025858:4779-4798 | Msa1425480:intergenic | 35.0% | |
| TGTATCGTTCAATTTCTTGG+GGG | + | tig0025858:4936-4955 | Msa1425480:intron | 35.0% | |
| ATATACAAGACATCAATCGG+TGG | + | tig0025858:5086-5105 | Msa1425480:intron | 35.0% | |
| TATACAAGACATCAATCGGT+GGG | + | tig0025858:5087-5106 | Msa1425480:intron | 35.0% | |
| CCAATATCCATGTACATGTA+AGG | - | tig0025858:5122-5141 | Msa1425480:intergenic | 35.0% | |
| CCTTACATGTACATGGATAT+TGG | + | tig0025858:5119-5138 | Msa1425480:intron | 35.0% | |
| !!! | TGCCAATAAACTTTTAGGAC+AGG | - | tig0025858:5229-5248 | Msa1425480:intergenic | 35.0% |
| GGATCAAATTTAACACCTCT+AGG | - | tig0025858:5386-5405 | Msa1425480:intergenic | 35.0% | |
| AATTCATCGATGAATGGATG+GGG | - | tig0025858:5467-5486 | Msa1425480:intergenic | 35.0% | |
| ! | TATAGGCTTTGATTGCTCTA+TGG | - | tig0025858:5667-5686 | Msa1425480:intergenic | 35.0% |
| GCAATCAAAGCCTATAATAC+TGG | + | tig0025858:5671-5690 | Msa1425480:CDS | 35.0% | |
| !! | CACATATTTTTCGACGCTTT+CGG | - | tig0025858:5700-5719 | Msa1425480:intergenic | 35.0% |
| ACTAAACCTATCCTCTTGAA+CGG | + | tig0025858:5761-5780 | Msa1425480:CDS | 35.0% | |
| GAAAAGCTGAGAAAACTAAC+TGG | + | tig0025858:5840-5859 | Msa1425480:CDS | 35.0% | |
| GTTATGCATCAATACCATCT+TGG | + | tig0025858:5863-5882 | Msa1425480:CDS | 35.0% | |
| !! | GTCATCTTTTTCACCCAATT+TGG | - | tig0025858:5954-5973 | Msa1425480:intergenic | 35.0% |
| ! | TTTTATAACAGTTGCTTCCG+AGG | - | tig0025858:5993-6012 | Msa1425480:intergenic | 35.0% |
| GGAAGCAACTGTTATAAAAG+TGG | + | tig0025858:5994-6013 | Msa1425480:CDS | 35.0% | |
| ! | AGTGGAAATGATTTTACCTG+AGG | - | tig0025858:6112-6131 | Msa1425480:intergenic | 35.0% |
| CGCAAAATCGCATATAATCA+AGG | - | tig0025858:6201-6220 | Msa1425480:intergenic | 35.0% | |
| ! | TGATTATATGCGATTTTGCG+CGG | + | tig0025858:6201-6220 | Msa1425480:intron | 35.0% |
| GTTAAACTCATAATGCTGGT+TGG | + | tig0025858:6304-6323 | Msa1425480:intron | 35.0% | |
| TACAGATAACCAAGAGTGAT+TGG | - | tig0025858:6527-6546 | Msa1425480:intergenic | 35.0% | |
| !!! | TTGATAGTTTTGGTTCGTGA+TGG | + | tig0025858:6647-6666 | Msa1425480:intron | 35.0% |
| AGATTCTACCAGATCTTTCT+CGG | + | tig0025858:6735-6754 | Msa1425480:intron | 35.0% | |
| ! | ATAGTCGACGAGTCAATTTT+TGG | - | tig0025858:6803-6822 | Msa1425480:intergenic | 35.0% |
| ATTGAATTCACAGCAACTTG+CGG | + | tig0025858:6874-6893 | Msa1425480:CDS | 35.0% | |
| TGAGCATATACAGAAAGACT+AGG | - | tig0025858:6980-6999 | Msa1425480:intergenic | 35.0% | |
| ! | CAGTTGACTTAATCGAATGT+CGG | - | tig0025858:7188-7207 | Msa1425480:intergenic | 35.0% |
| TGGAAGGTCATTGAAAAAGT+AGG | - | tig0025858:7216-7235 | Msa1425480:intergenic | 35.0% | |
| TTAATAGGAATTCAGCTCAC+AGG | + | tig0025858:7308-7327 | Msa1425480:intron | 35.0% | |
| !! | AGAAAGCATTGATTACAGCT+TGG | - | tig0025858:7472-7491 | Msa1425480:intergenic | 35.0% |
| ATATTGCATTTGTGCGTGTC+AGG | + | tig0025858:3444-3463 | Msa1425480:intron | 40.0% | |
| TGCGTGTCAGGTTTATTTCA+TGG | + | tig0025858:3456-3475 | Msa1425480:intron | 40.0% | |
| TAGGAAACTAGACATGAAGG+AGG | - | tig0025858:3499-3518 | Msa1425480:intergenic | 40.0% | |
| TCTCATCTGTGATTCTGATC+AGG | + | tig0025858:3734-3753 | Msa1425480:intron | 40.0% | |
| GACTAGAGAGTAGTATGACT+GGG | - | tig0025858:3796-3815 | Msa1425480:intergenic | 40.0% | |
| AGACTAGAGAGTAGTATGAC+TGG | - | tig0025858:3797-3816 | Msa1425480:intergenic | 40.0% | |
| TTAAGTGGAGTACATGGGAA+TGG | - | tig0025858:3829-3848 | Msa1425480:intergenic | 40.0% | |
| GAGGATTAAGTGGAGTACAT+GGG | - | tig0025858:3834-3853 | Msa1425480:intergenic | 40.0% | |
| AGAGGATTAAGTGGAGTACA+TGG | - | tig0025858:3835-3854 | Msa1425480:intergenic | 40.0% | |
| ! | TGCATGCTGTTTGAGCAAAT+TGG | - | tig0025858:3926-3945 | Msa1425480:intergenic | 40.0% |
| ACATGTGTAGATGTGGTTGT+GGG | - | tig0025858:4000-4019 | Msa1425480:intergenic | 40.0% | |
| AACATGTGTAGATGTGGTTG+TGG | - | tig0025858:4001-4020 | Msa1425480:intergenic | 40.0% | |
| ACCACATCTACACATGTTAG+AGG | + | tig0025858:4003-4022 | Msa1425480:intron | 40.0% | |
| TCCTCTAACATGTGTAGATG+TGG | - | tig0025858:4007-4026 | Msa1425480:intergenic | 40.0% | |
| ACGAAAAAAGGCAGTACAGA+GGG | - | tig0025858:4084-4103 | Msa1425480:intergenic | 40.0% | |
| CTTCATCCATTCCCATAACA+CGG | + | tig0025858:4215-4234 | Msa1425480:intron | 40.0% | |
| GAAGTGGACGATTTATAGCT+TGG | - | tig0025858:4253-4272 | Msa1425480:intergenic | 40.0% | |
| CAAGAAGGGACTCAATTAGA+TGG | - | tig0025858:4398-4417 | Msa1425480:intergenic | 40.0% | |
| CAACAGTTTGGACCAAATGT+TGG | + | tig0025858:4429-4448 | Msa1425480:intron | 40.0% | |
| GAGAATTTCGTCCTATGTGA+TGG | + | tig0025858:4572-4591 | Msa1425480:intron | 40.0% | |
| GGGAAGACCTGTAGAAATAT+CGG | + | tig0025858:4593-4612 | Msa1425480:intron | 40.0% | |
| GACCTGTAGAAATATCGGTA+AGG | + | tig0025858:4598-4617 | Msa1425480:intron | 40.0% | |
| ! | CTCCTTACCGATATTTCTAC+AGG | - | tig0025858:4603-4622 | Msa1425480:intergenic | 40.0% |
| GAAATATCGGTAAGGAGAGT+AGG | + | tig0025858:4606-4625 | Msa1425480:intron | 40.0% | |
| AAAAGGAACGGAAATGCAGT+AGG | + | tig0025858:4862-4881 | Msa1425480:intron | 40.0% | |
| GCATTCACCTTACATGTACA+TGG | + | tig0025858:5112-5131 | Msa1425480:intron | 40.0% | |
| TATTGGCGATCTCAAATGCT+TGG | + | tig0025858:5136-5155 | Msa1425480:intron | 40.0% | |
| GTTGTTAGGTAACACAAGAG+TGG | + | tig0025858:5351-5370 | Msa1425480:intron | 40.0% | |
| TTAACACCTCTAGGTAATCC+AGG | - | tig0025858:5377-5396 | Msa1425480:intergenic | 40.0% | |
| !! | TTGCTTGCAAAAGTTGGTGA+AGG | + | tig0025858:5431-5450 | Msa1425480:CDS | 40.0% |
| CTTTCGGCTTCCAGTATTAT+AGG | - | tig0025858:5684-5703 | Msa1425480:intergenic | 40.0% | |
| !! | CGAAAGCGTCGAAAAATATG+TGG | + | tig0025858:5698-5717 | Msa1425480:CDS | 40.0% |
| CTAAACCTATCCTCTTGAAC+GGG | + | tig0025858:5762-5781 | Msa1425480:CDS | 40.0% | |
| CTTTATATGACTCCAGAGAG+TGG | + | tig0025858:5815-5834 | Msa1425480:CDS | 40.0% | |
| ATACCATCTTGGAACAGAAG+AGG | + | tig0025858:5874-5893 | Msa1425480:CDS | 40.0% | |
| TGGAACAGAAGAGGATGAAA+AGG | + | tig0025858:5883-5902 | Msa1425480:CDS | 40.0% | |
| ACAGAAGAGGATGAAAAGGA+TGG | + | tig0025858:5887-5906 | Msa1425480:CDS | 40.0% | |
| CCAAAATGTTCCTGAAACCT+CGG | + | tig0025858:5973-5992 | Msa1425480:CDS | 40.0% | |
| AGAATCTCATCATAGTCCTC+AGG | + | tig0025858:6093-6112 | Msa1425480:CDS | 40.0% | |
| ACACCCTCTTCCAAAAACAA+AGG | - | tig0025858:6158-6177 | Msa1425480:intergenic | 40.0% | |
| CTTAACCTTCCAATCACTCT+TGG | + | tig0025858:6515-6534 | Msa1425480:intron | 40.0% | |
| GATAACCAAGAGTGATTGGA+AGG | - | tig0025858:6523-6542 | Msa1425480:intergenic | 40.0% | |
| TAATCACTCCCATTCAAAGC+TGG | - | tig0025858:6606-6625 | Msa1425480:intergenic | 40.0% | |
| CATTCTAACCGAGAAAGATC+TGG | - | tig0025858:6746-6765 | Msa1425480:intergenic | 40.0% | |
| CAGATCTTTCTCGGTTAGAA+TGG | + | tig0025858:6744-6763 | Msa1425480:CDS | 40.0% | |
| AGAATGGCTACTTGAAAGTC+AGG | + | tig0025858:6760-6779 | Msa1425480:CDS | 40.0% | |
| CTGAAAGAAATCTGCGAACA+AGG | - | tig0025858:6909-6928 | Msa1425480:intergenic | 40.0% | |
| ! | CAGTGTCAAGGTTGAGATTT+TGG | - | tig0025858:7138-7157 | Msa1425480:intergenic | 40.0% |
| TGACTTAATCGAATGTCGGA+AGG | - | tig0025858:7184-7203 | Msa1425480:intergenic | 40.0% | |
| CGACATTCGATTAAGTCAAC+TGG | + | tig0025858:7186-7205 | Msa1425480:CDS | 40.0% | |
| !! | AGCATTGATTACAGCTTGGT+TGG | - | tig0025858:7468-7487 | Msa1425480:intergenic | 40.0% |
| CTTGTATATGTAGACCGTCG+TGG | + | tig0025858:3225-3244 | Msa1425480:CDS | 45.0% | |
| TATATGTAGACCGTCGTGGT+TGG | + | tig0025858:3229-3248 | Msa1425480:CDS | 45.0% | |
| TTGACAATTTGGGCAAGCTC+TGG | - | tig0025858:3333-3352 | Msa1425480:intergenic | 45.0% | |
| ACTAGACATGAAGGAGGTTG+AGG | - | tig0025858:3493-3512 | Msa1425480:intergenic | 45.0% | |
| CACGAAAAAAGGCAGTACAG+AGG | - | tig0025858:4085-4104 | Msa1425480:intergenic | 45.0% | |
| ! | TGAGATTTTCACAACGTGCC+AGG | + | tig0025858:4142-4161 | Msa1425480:intron | 45.0% |
| ATGGGAATGGATGAAGCAGA+AGG | - | tig0025858:4211-4230 | Msa1425480:intergenic | 45.0% | |
| AGATTTCTTAGTCTGCCCCA+TGG | + | tig0025858:4289-4308 | Msa1425480:intron | 45.0% | |
| ATTGAGTCCCTTCTTGTCGA+CGG | + | tig0025858:4402-4421 | Msa1425480:intron | 45.0% | |
| TTGAATGCCGTCGACAAGAA+GGG | - | tig0025858:4412-4431 | Msa1425480:intergenic | 45.0% | |
| TACAGGTCTTCCCATCACAT+AGG | - | tig0025858:4586-4605 | Msa1425480:intergenic | 45.0% | |
| !! | CATTCATAGGGTTGGCTACA+TGG | - | tig0025858:4771-4790 | Msa1425480:intergenic | 45.0% |
| TGGCACTTGCTTGCAAAAGT+TGG | + | tig0025858:5425-5444 | Msa1425480:CDS | 45.0% | |
| TAAAGCTTAGACAGTCCACC+TGG | - | tig0025858:5545-5564 | Msa1425480:intergenic | 45.0% | |
| AATGTAGGTGTTTCGCGAGA+TGG | + | tig0025858:5623-5642 | Msa1425480:intron | 45.0% | |
| GAGGATAGGTTTAGTCCTTC+CGG | - | tig0025858:5756-5775 | Msa1425480:intergenic | 45.0% | |
| TATATGACTCCAGAGAGTGG+AGG | + | tig0025858:5818-5837 | Msa1425480:CDS | 45.0% | |
| CATCCTCTTCTGTTCCAAGA+TGG | - | tig0025858:5880-5899 | Msa1425480:intergenic | 45.0% | |
| ! | CCGAGGTTTCAGGAACATTT+TGG | - | tig0025858:5976-5995 | Msa1425480:intergenic | 45.0% |
| GAACATTGCTTCTCATTGCG+AGG | - | tig0025858:6055-6074 | Msa1425480:intergenic | 45.0% | |
| TGGTTCGTGATGGTAGTTTG+TGG | + | tig0025858:6657-6676 | Msa1425480:intron | 45.0% | |
| AATTCACAGCAACTTGCGGA+AGG | + | tig0025858:6878-6897 | Msa1425480:CDS | 45.0% | |
| CAGTGTCAGCGTCAAGATTA+AGG | - | tig0025858:7090-7109 | Msa1425480:intergenic | 45.0% | |
| GCTCTACATTTGCAGTGTCA+AGG | - | tig0025858:7150-7169 | Msa1425480:intergenic | 45.0% | |
| ACAGGATAGTTACGTTGCGT+GGG | + | tig0025858:7326-7345 | Msa1425480:CDS | 45.0% | |
| ! | CTTTTGTCCACCAACCACGA+CGG | - | tig0025858:3242-3261 | Msa1425480:intergenic | 50.0% |
| ! | CAATTTGGGCAAGCTCTGGT+AGG | - | tig0025858:3329-3348 | Msa1425480:intergenic | 50.0% |
| TTGGTTGGAGACGTTGTGAG+AGG | - | tig0025858:3971-3990 | Msa1425480:intergenic | 50.0% | |
| ATGTGGTTGTGGGTCTGTCT+TGG | - | tig0025858:3990-4009 | Msa1425480:intergenic | 50.0% | |
| TGTGTGCCGTGTTATGGGAA+TGG | - | tig0025858:4224-4243 | Msa1425480:intergenic | 50.0% | |
| GTTGAATGCCGTCGACAAGA+AGG | - | tig0025858:4413-4432 | Msa1425480:intergenic | 50.0% | |
| GTCGACGGCATTCAACAGTT+TGG | + | tig0025858:4417-4436 | Msa1425480:intron | 50.0% | |
| !! | AAGGAAGGCATCAGTCACAC+AGG | + | tig0025858:5014-5033 | Msa1425480:intron | 50.0% |
| TAGGTAACACAAGAGTGGCC+TGG | + | tig0025858:5356-5375 | Msa1425480:intron | 50.0% | |
| ACTCATCCTCAGCGTTTACC+AGG | + | tig0025858:5524-5543 | Msa1425480:CDS | 50.0% | |
| TGAAGCCCGTTCAAGAGGAT+AGG | - | tig0025858:5770-5789 | Msa1425480:intergenic | 50.0% | |
| !! | CTTTCTGAAGCCCGTTCAAG+AGG | - | tig0025858:5775-5794 | Msa1425480:intergenic | 50.0% |
| ! | CTCTTGAACGGGCTTCAGAA+AGG | + | tig0025858:5773-5792 | Msa1425480:CDS | 50.0% |
| ! | TCAGCTTTTCCTCCACTCTC+TGG | - | tig0025858:5830-5849 | Msa1425480:intergenic | 50.0% |
| CAGCAGCAGCAAGCCAAATT+GGG | + | tig0025858:5938-5957 | Msa1425480:CDS | 50.0% | |
| ACAGTTGCTTCCGAGGTTTC+AGG | - | tig0025858:5986-6005 | Msa1425480:intergenic | 50.0% | |
| TTCTCATTGCGAGGAGGTTC+AGG | - | tig0025858:6046-6065 | Msa1425480:intergenic | 50.0% | |
| CATTGCTTCTCATTGCGAGG+AGG | - | tig0025858:6052-6071 | Msa1425480:intergenic | 50.0% | |
| GCGGCAAACATGCATCTGTT+GGG | - | tig0025858:6475-6494 | Msa1425480:intergenic | 50.0% | |
| AGCGGCAAACATGCATCTGT+TGG | - | tig0025858:6476-6495 | Msa1425480:intergenic | 50.0% | |
| TTCAGAGCCAGTCTCCGAAA+AGG | + | tig0025858:6924-6943 | Msa1425480:CDS | 50.0% | |
| TCAGAGCCAGTCTCCGAAAA+GGG | + | tig0025858:6925-6944 | Msa1425480:CDS | 50.0% | |
| ! | CCGTTTTCCCCATCCCTTTT+CGG | - | tig0025858:6941-6960 | Msa1425480:intergenic | 50.0% |
| CCGAAAAGGGATGGGGAAAA+CGG | + | tig0025858:6938-6957 | Msa1425480:CDS | 50.0% | |
| TGGGGAAAACGGAGAGCAAA+TGG | + | tig0025858:6949-6968 | Msa1425480:CDS | 50.0% | |
| CACAGGATAGTTACGTTGCG+TGG | + | tig0025858:7325-7344 | Msa1425480:CDS | 50.0% | |
| CAGGATAGTTACGTTGCGTG+GGG | + | tig0025858:7327-7346 | Msa1425480:CDS | 50.0% | |
| ATGTAGACCGTCGTGGTTGG+TGG | + | tig0025858:3232-3251 | Msa1425480:CDS | 55.0% | |
| !! | CGTCGTGGTTGGTGGACAAA+AGG | + | tig0025858:3240-3259 | Msa1425480:CDS | 55.0% |
| GGTTGTGGGTCTGTCTTGGT+TGG | - | tig0025858:3986-4005 | Msa1425480:intergenic | 55.0% | |
| AAGCAGAAGGCTGCAGAGAC+AGG | - | tig0025858:4198-4217 | Msa1425480:intergenic | 55.0% | |
| AGATGGCTTCGAGAAGCGAG+TGG | - | tig0025858:4381-4400 | Msa1425480:intergenic | 55.0% | |
| GAGTGGCCTGGATTACCTAG+AGG | + | tig0025858:5368-5387 | Msa1425480:CDS | 55.0% | |
| CATCCTCAGCGTTTACCAGG+TGG | + | tig0025858:5527-5546 | Msa1425480:intron | 55.0% | |
| AGTCCACCTGGTAAACGCTG+AGG | - | tig0025858:5533-5552 | Msa1425480:intergenic | 55.0% | |
| !! | AAGATTTTGGCGACGTCCGC+TGG | + | tig0025858:5723-5742 | Msa1425480:CDS | 55.0% |
| !! | CCAATTTGGCTTGCTGCTGC+TGG | - | tig0025858:5940-5959 | Msa1425480:intergenic | 55.0% |
| CCAGCAGCAGCAAGCCAAAT+TGG | + | tig0025858:5937-5956 | Msa1425480:CDS | 55.0% | |
| GTCACGGAATTGGGAGTGAC+TGG | - | tig0025858:6022-6041 | Msa1425480:intergenic | 55.0% | |
| GGTTCAGGCGTCACGGAATT+GGG | - | tig0025858:6031-6050 | Msa1425480:intergenic | 55.0% | |
| AGGTTCAGGCGTCACGGAAT+TGG | - | tig0025858:6032-6051 | Msa1425480:intergenic | 55.0% | |
| AGCCAGTCTCCGAAAAGGGA+TGG | + | tig0025858:6929-6948 | Msa1425480:CDS | 55.0% | |
| GCCAGTCTCCGAAAAGGGAT+GGG | + | tig0025858:6930-6949 | Msa1425480:CDS | 55.0% | |
| CCAGTCTCCGAAAAGGGATG+GGG | + | tig0025858:6931-6950 | Msa1425480:CDS | 55.0% | |
| GATAGTTACGTTGCGTGGGG+TGG | + | tig0025858:7330-7349 | Msa1425480:CDS | 55.0% | |
| ! | TCCTTCCGGTCTTGTGCCAG+CGG | - | tig0025858:5742-5761 | Msa1425480:intergenic | 60.0% |
| ! | CCCCATCCCTTTTCGGAGAC+TGG | - | tig0025858:6934-6953 | Msa1425480:intergenic | 60.0% |
| GACGTCCGCTGGCACAAGAC+CGG | + | tig0025858:5734-5753 | Msa1425480:CDS | 65.0% | |
| TCCGCTGGCACAAGACCGGA+AGG | + | tig0025858:5738-5757 | Msa1425480:CDS | 65.0% | |
| GCGAGGAGGTTCAGGCGTCA+CGG | - | tig0025858:6038-6057 | Msa1425480:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025858 | gene | 3221 | 7525 | 3221 | ID=Msa1425480;Name=Msa1425480 |
| tig0025858 | mRNA | 3221 | 7525 | 3221 | ID=Msa1425480-mRNA-1;Parent=Msa1425480;Name=Msa1425480-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|1|0.8|1|1|1|5|154|450 |
| tig0025858 | exon | 3221 | 3373 | 3221 | ID=Msa1425480-mRNA-1:exon:4329;Parent=Msa1425480-mRNA-1 |
| tig0025858 | exon | 5359 | 5545 | 5359 | ID=Msa1425480-mRNA-1:exon:4330;Parent=Msa1425480-mRNA-1 |
| tig0025858 | exon | 5630 | 6114 | 5630 | ID=Msa1425480-mRNA-1:exon:4331;Parent=Msa1425480-mRNA-1 |
| tig0025858 | exon | 6737 | 7207 | 6737 | ID=Msa1425480-mRNA-1:exon:4332;Parent=Msa1425480-mRNA-1 |
| tig0025858 | exon | 7315 | 7525 | 7315 | ID=Msa1425480-mRNA-1:exon:4333;Parent=Msa1425480-mRNA-1 |
| tig0025858 | CDS | 3221 | 3373 | 3221 | ID=Msa1425480-mRNA-1:cds;Parent=Msa1425480-mRNA-1 |
| tig0025858 | CDS | 5359 | 5545 | 5359 | ID=Msa1425480-mRNA-1:cds;Parent=Msa1425480-mRNA-1 |
| tig0025858 | CDS | 5630 | 6114 | 5630 | ID=Msa1425480-mRNA-1:cds;Parent=Msa1425480-mRNA-1 |
| tig0025858 | CDS | 6737 | 7207 | 6737 | ID=Msa1425480-mRNA-1:cds;Parent=Msa1425480-mRNA-1 |
| tig0025858 | CDS | 7315 | 7371 | 7315 | ID=Msa1425480-mRNA-1:cds;Parent=Msa1425480-mRNA-1 |
| tig0025858 | three_prime_UTR | 7372 | 7525 | 7372 | ID=Msa1425480-mRNA-1:three_prime_utr;Parent=Msa1425480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
