Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425820 | XP_003614405.1 | 81.773 | 203 | 18 | 2 | 2 | 186 | 4 | 205 | 7.29e-100 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425820 | sp|Q9C540|ACFR4_ARATH | 58.549 | 193 | 72 | 2 | 1 | 186 | 1 | 192 | 1.04e-68 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425820 | G7JX23 | 81.773 | 203 | 18 | 2 | 2 | 186 | 4 | 205 | 3.48e-100 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0807260 | Msa1425820 | 0.807977 | 3.883816e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425820 | MtrunA17_Chr5g0422371 | 81.773 | 203 | 18 | 2 | 2 | 186 | 4 | 205 | 6.70e-104 | 299 |
| Msa1425820 | MtrunA17_Chr6g0456901 | 38.806 | 201 | 107 | 4 | 1 | 186 | 1 | 200 | 3.50e-39 | 134 |
| Msa1425820 | MtrunA17_Chr1g0203371 | 33.990 | 203 | 116 | 5 | 1 | 188 | 1 | 200 | 3.52e-28 | 105 |
| Msa1425820 | MtrunA17_Chr1g0161921 | 37.956 | 137 | 78 | 3 | 52 | 187 | 67 | 197 | 7.95e-24 | 94.0 |
| Msa1425820 | MtrunA17_Chr1g0161941 | 32.353 | 136 | 86 | 3 | 52 | 186 | 61 | 191 | 1.62e-16 | 74.3 |
| Msa1425820 | MtrunA17_Chr8g0375991 | 28.571 | 189 | 113 | 6 | 14 | 187 | 9 | 190 | 1.35e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425820 | AT1G26100.1 | 58.549 | 193 | 72 | 2 | 1 | 186 | 1 | 192 | 1.05e-69 | 212 |
| Msa1425820 | AT5G38630.1 | 38.342 | 193 | 101 | 4 | 10 | 186 | 10 | 200 | 1.84e-38 | 132 |
| Msa1425820 | AT4G25570.1 | 33.158 | 190 | 110 | 5 | 13 | 187 | 12 | 199 | 7.27e-26 | 100 |
| Msa1425820 | AT4G25570.2 | 32.474 | 194 | 114 | 5 | 9 | 187 | 49 | 240 | 2.55e-25 | 99.8 |
Find 62 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | tig0025899:-64642 | Msa1425820:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | tig0025899:-65080 | Msa1425820:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | tig0025899:-62129 | Msa1425820:exon |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | tig0025899:-64651 | Msa1425820:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | tig0025899:-64730 | Msa1425820:intron |
| TTGATTTGTGTATCACTCTT+TGG | 0.246496 | tig0025899:-64549 | Msa1425820:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | tig0025899:-64641 | Msa1425820:CDS |
| CTAATAGGCTTCTTGAACTT+TGG | 0.275640 | tig0025899:-62350 | Msa1425820:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | tig0025899:-62291 | Msa1425820:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | tig0025899:-64635 | Msa1425820:CDS |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | tig0025899:-64578 | Msa1425820:CDS |
| GATCTGTGAGGAAGAGAATT+AGG | 0.300280 | tig0025899:+65024 | None:intergenic |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | tig0025899:-64650 | Msa1425820:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | tig0025899:-65079 | Msa1425820:CDS |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | tig0025899:+64604 | None:intergenic |
| AGTCCATGGTTGTAAATCTT+AGG | 0.342003 | tig0025899:-62167 | Msa1425820:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | tig0025899:-65163 | Msa1425820:exon |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | tig0025899:-62249 | Msa1425820:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | tig0025899:-62143 | Msa1425820:exon |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | tig0025899:-61985 | Msa1425820:three_prime_UTR |
| ATTGTATTGCAGTGGCTAAT+AGG | 0.375849 | tig0025899:-62365 | Msa1425820:intron |
| CCTAAGTATCAAATTCTTCA+AGG | 0.384117 | tig0025899:-62095 | Msa1425820:three_prime_UTR |
| CCTTGAAGAATTTGATACTT+AGG | 0.393626 | tig0025899:+62095 | None:intergenic |
| TGTATCACTCTTTGGAGCTC+AGG | 0.406685 | tig0025899:-64541 | Msa1425820:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | tig0025899:-64703 | Msa1425820:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | tig0025899:+62268 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | tig0025899:-62317 | Msa1425820:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | tig0025899:-64612 | Msa1425820:CDS |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | tig0025899:-64573 | Msa1425820:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | tig0025899:+62182 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | tig0025899:-64704 | Msa1425820:CDS |
| ACTACTAACTACTACACTCT+TGG | 0.453368 | tig0025899:+65228 | None:intergenic |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | tig0025899:+65034 | None:intergenic |
| TGGTTGTAAATCTTAGGCTT+AGG | 0.459284 | tig0025899:-62161 | Msa1425820:CDS |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | tig0025899:-64669 | Msa1425820:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | tig0025899:-64711 | Msa1425820:CDS |
| AAAAGCAAAGGGAGTAGTGA+GGG | 0.473857 | tig0025899:+65129 | None:intergenic |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | tig0025899:-64574 | Msa1425820:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | tig0025899:-64702 | Msa1425820:CDS |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | tig0025899:+62129 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | tig0025899:-64668 | Msa1425820:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | tig0025899:+62325 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | tig0025899:-62181 | Msa1425820:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | tig0025899:-64611 | Msa1425820:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | tig0025899:-64604 | Msa1425820:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | tig0025899:+64568 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | tig0025899:-64664 | Msa1425820:CDS |
| TGGTCACAAGCGAATTAAGA+TGG | 0.551793 | tig0025899:-61965 | Msa1425820:three_prime_UTR |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | tig0025899:-62271 | Msa1425820:CDS |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | tig0025899:+62288 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | tig0025899:-62259 | Msa1425820:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | tig0025899:-64710 | Msa1425820:CDS |
| GTGAGTGAGTGACTAGTGAA+AGG | 0.593336 | tig0025899:-65207 | Msa1425820:five_prime_UTR |
| CTAACTACTACACTCTTGGA+TGG | 0.593357 | tig0025899:+65232 | None:intergenic |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | tig0025899:-64701 | Msa1425820:CDS |
| CTTCTTGAACTTTGGCACCG+AGG | 0.645013 | tig0025899:-62342 | Msa1425820:CDS |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | tig0025899:-64667 | Msa1425820:CDS |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | tig0025899:+65140 | None:intergenic |
| AAGCCTAAGATTTACAACCA+TGG | 0.672792 | tig0025899:+62164 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | tig0025899:-62305 | Msa1425820:CDS |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | tig0025899:-62323 | Msa1425820:CDS |
| CTGCATAGATGAGATCTGTG+AGG | 0.788741 | tig0025899:+65012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTAAATAAATATTA+AGG | - | tig0025899:62860-62879 | Msa1425820:intron | 0.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | + | tig0025899:62233-62252 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | + | tig0025899:62234-62253 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | - | tig0025899:62271-62290 | Msa1425820:CDS | 10.0% |
| !!! | AAAAATTCTGAAAATTTTTT+TGG | - | tig0025899:63454-63473 | Msa1425820:intron | 10.0% |
| !!! | AAATTTTAAATGAAATTGAA+AGG | + | tig0025899:63955-63974 | None:intergenic | 10.0% |
| !! | TTAACTATTAATTTAAGAAT+TGG | - | tig0025899:64569-64588 | Msa1425820:CDS | 10.0% |
| !!! | TTCTAAGATTAATTTTTACT+TGG | - | tig0025899:62718-62737 | Msa1425820:intron | 15.0% |
| !!! | TCTAAGATTAATTTTTACTT+GGG | - | tig0025899:62719-62738 | Msa1425820:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | tig0025899:63243-63262 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+AGG | - | tig0025899:63570-63589 | Msa1425820:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | - | tig0025899:63630-63649 | Msa1425820:intron | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | - | tig0025899:62364-62383 | Msa1425820:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | - | tig0025899:62365-62384 | Msa1425820:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | + | tig0025899:62369-62388 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | + | tig0025899:62370-62389 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | - | tig0025899:62371-62390 | Msa1425820:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | - | tig0025899:62404-62423 | Msa1425820:intron | 20.0% |
| !!! | AATTTTATTTCCTGATGAAT+AGG | + | tig0025899:62847-62866 | None:intergenic | 20.0% |
| !!! | TTAGCTTATGAAATGATTTT+TGG | - | tig0025899:62919-62938 | Msa1425820:intron | 20.0% |
| !!! | AAAAAAGAACATGAAAGTAT+AGG | + | tig0025899:63141-63160 | None:intergenic | 20.0% |
| !!! | ATACTTTCATGTTCTTTTTT+AGG | - | tig0025899:63141-63160 | Msa1425820:intron | 20.0% |
| !!! | TACTTTCATGTTCTTTTTTA+GGG | - | tig0025899:63142-63161 | Msa1425820:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | tig0025899:63244-63263 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | tig0025899:63538-63557 | Msa1425820:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | tig0025899:63539-63558 | Msa1425820:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | + | tig0025899:63566-63585 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | - | tig0025899:63629-63648 | Msa1425820:intron | 20.0% |
| !!! | AGAATGGTTAAATATGTTTT+TGG | + | tig0025899:63657-63676 | None:intergenic | 20.0% |
| !! | AATCGTGAAATTAAAAAGAA+TGG | + | tig0025899:63673-63692 | None:intergenic | 20.0% |
| !! | AATTCTATTATTATCCCATA+TGG | - | tig0025899:63779-63798 | Msa1425820:intron | 20.0% |
| !! | AATATTTATTCGATCCATAT+GGG | + | tig0025899:63796-63815 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAGTTTTTCAATT+AGG | - | tig0025899:63834-63853 | Msa1425820:intron | 20.0% |
| !! | CAAAAAATTTGAACAAAAGA+GGG | - | tig0025899:64063-64082 | Msa1425820:intron | 20.0% |
| !! | AAAAAATTTGAACAAAAGAG+GGG | - | tig0025899:64064-64083 | Msa1425820:intron | 20.0% |
| !! | CTTATGCAAATTTATTAGTT+AGG | + | tig0025899:64166-64185 | None:intergenic | 20.0% |
| !! | CTCAAATAATGATAACTAAT+TGG | + | tig0025899:64192-64211 | None:intergenic | 20.0% |
| !!! | ATTCACAAATTAAGCTATTT+TGG | - | tig0025899:64232-64251 | Msa1425820:intron | 20.0% |
| !!! | TTAGTGTATACATAATCTTT+TGG | - | tig0025899:64725-64744 | Msa1425820:intron | 20.0% |
| !!! | TAGTGTATACATAATCTTTT+GGG | - | tig0025899:64726-64745 | Msa1425820:intron | 20.0% |
| !!! | GTGTATAGATATTTTATGTA+TGG | - | tig0025899:64759-64778 | Msa1425820:intron | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | - | tig0025899:65206-65225 | Msa1425820:five_prime_UTR | 20.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | - | tig0025899:62028-62047 | Msa1425820:three_prime_UTR | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | - | tig0025899:62317-62336 | Msa1425820:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | - | tig0025899:62579-62598 | Msa1425820:intron | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | - | tig0025899:62580-62599 | Msa1425820:intron | 25.0% |
| ! | AATATGCACTAAATATGTGA+TGG | - | tig0025899:62973-62992 | Msa1425820:intron | 25.0% |
| ! | ATTGTACTAACTAGCTAAAT+TGG | + | tig0025899:63035-63054 | None:intergenic | 25.0% |
| !! | CATTTTGTATTTTCCTTCTT+GGG | + | tig0025899:63080-63099 | None:intergenic | 25.0% |
| !! | TCGTCTTGTTGTAAAAATTT+AGG | - | tig0025899:63114-63133 | Msa1425820:intron | 25.0% |
| ! | CGAAAAGTTGACATATTATA+GGG | + | tig0025899:63184-63203 | None:intergenic | 25.0% |
| ! | ACGAAAAGTTGACATATTAT+AGG | + | tig0025899:63185-63204 | None:intergenic | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | - | tig0025899:63585-63604 | Msa1425820:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | tig0025899:63598-63617 | Msa1425820:intron | 25.0% |
| ! | CAATATTTATTCGATCCATA+TGG | + | tig0025899:63797-63816 | None:intergenic | 25.0% |
| ! | ATCATAAGAGAAAATATACG+AGG | + | tig0025899:63923-63942 | None:intergenic | 25.0% |
| !! | CCTCTTTTGTTCAAATTTTT+TGG | + | tig0025899:64065-64084 | None:intergenic | 25.0% |
| ! | CCAAAAAATTTGAACAAAAG+AGG | - | tig0025899:64062-64081 | Msa1425820:intron | 25.0% |
| !!! | TCAAAAAGTATTTTCCATGT+AGG | - | tig0025899:64101-64120 | Msa1425820:intron | 25.0% |
| !!! | ATTACATTTTTTCTCCTACA+TGG | + | tig0025899:64118-64137 | None:intergenic | 25.0% |
| ! | ATGCAAATTTATTAGTTAGG+AGG | + | tig0025899:64163-64182 | None:intergenic | 25.0% |
| !!! | CAAATTAAGCTATTTTGGTA+CGG | - | tig0025899:64237-64256 | Msa1425820:intron | 25.0% |
| ! | AACTCTCTATTTCATACAAA+TGG | + | tig0025899:64289-64308 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | - | tig0025899:64616-64635 | Msa1425820:CDS | 25.0% |
| !! | AGTGTATACATAATCTTTTG+GGG | - | tig0025899:64727-64746 | Msa1425820:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | + | tig0025899:62216-62235 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | - | tig0025899:62323-62342 | Msa1425820:CDS | 30.0% |
| !! | TTGATTTGTGTATCACTCTT+TGG | - | tig0025899:62642-62661 | Msa1425820:intron | 30.0% |
| ! | AGACTCTTTTGTATCAGTTT+TGG | - | tig0025899:62892-62911 | Msa1425820:intron | 30.0% |
| AACTAGCTAAATTGGAAAGT+AGG | + | tig0025899:63027-63046 | None:intergenic | 30.0% | |
| ! | GCATTTTGTATTTTCCTTCT+TGG | + | tig0025899:63081-63100 | None:intergenic | 30.0% |
| !! | AGTCGAAGGAATATTTTAGA+GGG | + | tig0025899:63214-63233 | None:intergenic | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | + | tig0025899:63215-63234 | None:intergenic | 30.0% |
| AGATTCTATGAGAGTTAACT+TGG | + | tig0025899:64018-64037 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTTTCG+TGG | + | tig0025899:64052-64071 | None:intergenic | 30.0% |
| ATGCATAATATATGCAAGGT+TGG | - | tig0025899:64620-64639 | Msa1425820:CDS | 30.0% | |
| TTCAACATATTGTATTGCAG+TGG | - | tig0025899:64818-64837 | Msa1425820:intron | 30.0% | |
| CCTTGAAGAATTTGATACTT+AGG | + | tig0025899:65099-65118 | None:intergenic | 30.0% | |
| CCTAAGTATCAAATTCTTCA+AGG | - | tig0025899:65096-65115 | Msa1425820:CDS | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | - | tig0025899:65121-65140 | Msa1425820:CDS | 30.0% |
| ACTACTAACTACTACACTCT+TGG | + | tig0025899:61966-61985 | None:intergenic | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | - | tig0025899:62111-62130 | Msa1425820:three_prime_UTR | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | - | tig0025899:62112-62131 | Msa1425820:three_prime_UTR | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | + | tig0025899:62160-62179 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | + | tig0025899:62331-62350 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | - | tig0025899:62461-62480 | Msa1425820:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | - | tig0025899:62550-62569 | Msa1425820:intron | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | - | tig0025899:62613-62632 | Msa1425820:intron | 35.0% | |
| TATCTTGACACCTATTCATC+AGG | - | tig0025899:62834-62853 | Msa1425820:intron | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | + | tig0025899:63228-63247 | None:intergenic | 35.0% | |
| AACAAAAGAGGGGCAAAAAT+AGG | - | tig0025899:64074-64093 | Msa1425820:intron | 35.0% | |
| TTTGAGTATGCGAGATTATG+CGG | - | tig0025899:64206-64225 | Msa1425820:intron | 35.0% | |
| !!! | TTAAGCTATTTTGGTACGGT+TGG | - | tig0025899:64241-64260 | Msa1425820:intron | 35.0% |
| TGGTTAGAGTTTAACTCAGT+TGG | - | tig0025899:64589-64608 | Msa1425820:CDS | 35.0% | |
| TTAGAGTTTAACTCAGTTGG+TGG | - | tig0025899:64592-64611 | Msa1425820:CDS | 35.0% | |
| TAGAGTTTAACTCAGTTGGT+GGG | - | tig0025899:64593-64612 | Msa1425820:CDS | 35.0% | |
| AATCCAGACACTACAAAGAT+TGG | - | tig0025899:64649-64668 | Msa1425820:CDS | 35.0% | |
| TAACCAATCTTTGTAGTGTC+TGG | + | tig0025899:64655-64674 | None:intergenic | 35.0% | |
| ATTGTATTGCAGTGGCTAAT+AGG | - | tig0025899:64826-64845 | Msa1425820:intron | 35.0% | |
| CTAATAGGCTTCTTGAACTT+TGG | - | tig0025899:64841-64860 | Msa1425820:intron | 35.0% | |
| TTACCATGGCATGTATTTCT+TGG | - | tig0025899:64900-64919 | Msa1425820:intron | 35.0% | |
| AGTCCATGGTTGTAAATCTT+AGG | - | tig0025899:65024-65043 | Msa1425820:CDS | 35.0% | |
| AAGCCTAAGATTTACAACCA+TGG | + | tig0025899:65030-65049 | None:intergenic | 35.0% | |
| TGGTTGTAAATCTTAGGCTT+AGG | - | tig0025899:65030-65049 | Msa1425820:CDS | 35.0% | |
| CTAACTACTACACTCTTGGA+TGG | + | tig0025899:61962-61981 | None:intergenic | 40.0% | |
| AAAAGCAAAGGGAGTAGTGA+GGG | + | tig0025899:62065-62084 | None:intergenic | 40.0% | |
| AAAAAGCAAAGGGAGTAGTG+AGG | + | tig0025899:62066-62085 | None:intergenic | 40.0% | |
| CTCTCGCAAGAAAAAGCAAA+GGG | + | tig0025899:62076-62095 | None:intergenic | 40.0% | |
| ACTCTCGCAAGAAAAAGCAA+AGG | + | tig0025899:62077-62096 | None:intergenic | 40.0% | |
| ! | CTTTTTCTTGCGAGAGTTTG+TGG | - | tig0025899:62080-62099 | Msa1425820:three_prime_UTR | 40.0% |
| GATCTGTGAGGAAGAGAATT+AGG | + | tig0025899:62170-62189 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | - | tig0025899:62472-62491 | Msa1425820:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | - | tig0025899:62522-62541 | Msa1425820:intron | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | - | tig0025899:62523-62542 | Msa1425820:intron | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | - | tig0025899:62524-62543 | Msa1425820:intron | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | - | tig0025899:62549-62568 | Msa1425820:intron | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | - | tig0025899:62556-62575 | Msa1425820:intron | 40.0% |
| CCACAATCCCATCATTTACT+TGG | + | tig0025899:62590-62609 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | - | tig0025899:62587-62606 | Msa1425820:intron | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | - | tig0025899:62618-62637 | Msa1425820:intron | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | + | tig0025899:62626-62645 | None:intergenic | 40.0% | |
| !! | TGAATGATTGATGACGACCT+CGG | - | tig0025899:63000-63019 | Msa1425820:intron | 40.0% |
| TAAATTGGAAAGTAGGTCCG+AGG | + | tig0025899:63020-63039 | None:intergenic | 40.0% | |
| CTTGGGTCAGAATTCTCTAA+TGG | + | tig0025899:63063-63082 | None:intergenic | 40.0% | |
| TAGAGAATTCTGACCCAAGA+AGG | - | tig0025899:63064-63083 | Msa1425820:intron | 40.0% | |
| ACAAGACGAATGCTTCTGTT+GGG | + | tig0025899:63103-63122 | None:intergenic | 40.0% | |
| AACAAGACGAATGCTTCTGT+TGG | + | tig0025899:63104-63123 | None:intergenic | 40.0% | |
| ! | AGAGTTTAACTCAGTTGGTG+GGG | - | tig0025899:64594-64613 | Msa1425820:CDS | 40.0% |
| AAATGCGAACAGTGAGGATA+AGG | - | tig0025899:64874-64893 | Msa1425820:intron | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | - | tig0025899:64886-64905 | Msa1425820:intron | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | - | tig0025899:64920-64939 | Msa1425820:intron | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | + | tig0025899:64926-64945 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | - | tig0025899:64932-64951 | Msa1425820:intron | 40.0% |
| CCAGAATAACAAAGCCACTA+AGG | + | tig0025899:65065-65084 | None:intergenic | 40.0% | |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | - | tig0025899:65062-65081 | Msa1425820:CDS | 40.0% |
| TGGTCACAAGCGAATTAAGA+TGG | - | tig0025899:65226-65245 | Msa1425820:five_prime_UTR | 40.0% | |
| GTGAGTGAGTGACTAGTGAA+AGG | - | tig0025899:61984-62003 | Msa1425820:three_prime_UTR | 45.0% | |
| CTGCATAGATGAGATCTGTG+AGG | + | tig0025899:62182-62201 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | + | tig0025899:62305-62324 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | - | tig0025899:62503-62522 | Msa1425820:intron | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | - | tig0025899:62527-62546 | Msa1425820:intron | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | - | tig0025899:62617-62636 | Msa1425820:intron | 45.0% | |
| !! | TGTATCACTCTTTGGAGCTC+AGG | - | tig0025899:62650-62669 | Msa1425820:intron | 45.0% |
| TCACTGTTCGCATTTCTCCT+CGG | + | tig0025899:64869-64888 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | + | tig0025899:64906-64925 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | - | tig0025899:65048-65067 | Msa1425820:CDS | 45.0% | |
| !! | ACAAAAATTAAATTAAAATA+GGG | + | tig0025899:63274-63293 | None:intergenic | 5.0% |
| !! | TACAAAAATTAAATTAAAAT+AGG | + | tig0025899:63275-63294 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | + | tig0025899:63347-63366 | None:intergenic | 5.0% |
| !!! | TATAATATTTTGAATTTTTT+TGG | - | tig0025899:63486-63505 | Msa1425820:intron | 5.0% |
| GAGTAGTGAGGGAAAGACAG+TGG | + | tig0025899:62054-62073 | None:intergenic | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | + | tig0025899:62301-62320 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | - | tig0025899:62299-62318 | Msa1425820:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | - | tig0025899:62480-62499 | Msa1425820:intron | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | - | tig0025899:62481-62500 | Msa1425820:intron | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | - | tig0025899:62487-62506 | Msa1425820:intron | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | - | tig0025899:62488-62507 | Msa1425820:intron | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | - | tig0025899:62541-62560 | Msa1425820:intron | 50.0% |
| CTTCTTGAACTTTGGCACCG+AGG | - | tig0025899:64849-64868 | Msa1425820:intron | 50.0% | |
| GAGGAGAAATGCGAACAGTG+AGG | - | tig0025899:64868-64887 | Msa1425820:intron | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | + | tig0025899:65012-65031 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | - | tig0025899:65010-65029 | Msa1425820:intron | 50.0% |
| GGTTCTCCATCCTGTGCTCA+TGG | - | tig0025899:62292-62311 | Msa1425820:CDS | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | - | tig0025899:62489-62508 | Msa1425820:intron | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | + | tig0025899:62501-62520 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | - | tig0025899:62540-62559 | Msa1425820:intron | 55.0% |
| GCAGTAGCAACGGCTGAAAC+TGG | - | tig0025899:64942-64961 | Msa1425820:intron | 55.0% | |
| GATGGTTGCCTGGGTCAAGG+GGG | - | tig0025899:62490-62509 | Msa1425820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025899 | gene | 61951 | 65262 | 61951 | ID=Msa1425820;Name=Msa1425820 |
| tig0025899 | mRNA | 61951 | 65262 | 61951 | ID=Msa1425820-mRNA-1;Parent=Msa1425820;Name=Msa1425820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|0|0.66|1|1|1|3|195|194 |
| tig0025899 | exon | 61951 | 62375 | 61951 | ID=Msa1425820-mRNA-1:exon:4487;Parent=Msa1425820-mRNA-1 |
| tig0025899 | exon | 64538 | 64738 | 64538 | ID=Msa1425820-mRNA-1:exon:4486;Parent=Msa1425820-mRNA-1 |
| tig0025899 | exon | 65013 | 65262 | 65013 | ID=Msa1425820-mRNA-1:exon:4485;Parent=Msa1425820-mRNA-1 |
| tig0025899 | five_prime_UTR | 65167 | 65262 | 65167 | ID=Msa1425820-mRNA-1:five_prime_utr;Parent=Msa1425820-mRNA-1 |
| tig0025899 | CDS | 65013 | 65166 | 65013 | ID=Msa1425820-mRNA-1:cds;Parent=Msa1425820-mRNA-1 |
| tig0025899 | CDS | 64538 | 64738 | 64538 | ID=Msa1425820-mRNA-1:cds;Parent=Msa1425820-mRNA-1 |
| tig0025899 | CDS | 62146 | 62375 | 62146 | ID=Msa1425820-mRNA-1:cds;Parent=Msa1425820-mRNA-1 |
| tig0025899 | three_prime_UTR | 61951 | 62145 | 61951 | ID=Msa1425820-mRNA-1:three_prime_utr;Parent=Msa1425820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
