Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807260 | sp|Q9C540|ACFR4_ARATH | 63.968 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 8.67e-97 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807260 | G7JX23 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 9.16e-168 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074350 | Msa0807260 | 0.812447 | 4.221145e-51 | -8.615850e-47 |
| Msa0081520 | Msa0807260 | 0.807176 | 5.743753e-50 | -8.615850e-47 |
| Msa0117480 | Msa0807260 | 0.813143 | 2.971631e-51 | -8.615850e-47 |
| Msa0626450 | Msa0807260 | 0.847690 | 9.856946e-60 | -8.615850e-47 |
| Msa0626490 | Msa0807260 | 0.844826 | 5.943641e-59 | -8.615850e-47 |
| Msa0664600 | Msa0807260 | 0.846616 | 1.942293e-59 | -8.615850e-47 |
| Msa0710800 | Msa0807260 | 0.896982 | 2.185175e-76 | -8.615850e-47 |
| Msa0729100 | Msa0807260 | 0.801877 | 7.316653e-49 | -8.615850e-47 |
| Msa0729490 | Msa0807260 | 0.922914 | 5.283693e-89 | -8.615850e-47 |
| Msa0756490 | Msa0807260 | 0.818347 | 2.055514e-52 | -8.615850e-47 |
| Msa0769180 | Msa0807260 | 0.815116 | 1.090293e-51 | -8.615850e-47 |
| Msa0807260 | Msa0807280 | 0.827049 | 1.938424e-54 | -8.615850e-47 |
| Msa0807260 | Msa0807820 | 0.805593 | 1.238885e-49 | -8.615850e-47 |
| Msa0807260 | Msa0829330 | 0.814162 | 1.772691e-51 | -8.615850e-47 |
| Msa0807260 | Msa0835490 | 0.822562 | 2.216863e-53 | -8.615850e-47 |
| Msa0807260 | Msa0861510 | 0.800090 | 1.696524e-48 | -8.615850e-47 |
| Msa0807260 | Msa0861600 | 0.801528 | 8.627924e-49 | -8.615850e-47 |
| Msa0807260 | Msa0866270 | 0.850036 | 2.201287e-60 | -8.615850e-47 |
| Msa0807260 | Msa0866290 | 0.804295 | 2.313376e-49 | -8.615850e-47 |
| Msa0807260 | Msa0945110 | 0.817219 | 3.693406e-52 | -8.615850e-47 |
| Msa0807260 | Msa0967870 | 0.830224 | 3.312177e-55 | -8.615850e-47 |
| Msa0807260 | Msa0980140 | 0.813857 | 2.069507e-51 | -8.615850e-47 |
| Msa0807260 | Msa1005870 | 0.809586 | 1.759009e-50 | -8.615850e-47 |
| Msa0807260 | Msa1019430 | 0.814299 | 1.653545e-51 | -8.615850e-47 |
| Msa0807260 | Msa1019470 | 0.822425 | 2.385137e-53 | -8.615850e-47 |
| Msa0807260 | Msa1020510 | 0.818521 | 1.877311e-52 | -8.615850e-47 |
| Msa0807260 | Msa1023500 | 0.809593 | 1.752627e-50 | -8.615850e-47 |
| Msa0807260 | Msa1044680 | 0.804303 | 2.304265e-49 | -8.615850e-47 |
| Msa0807260 | Msa1051830 | 0.810766 | 9.789453e-51 | -8.615850e-47 |
| Msa0807260 | Msa1092010 | 0.809322 | 2.003574e-50 | -8.615850e-47 |
| Msa0807260 | Msa1140210 | 0.820334 | 7.245334e-53 | -8.615850e-47 |
| Msa0807260 | Msa1183120 | 0.806627 | 7.503460e-50 | -8.615850e-47 |
| Msa0807260 | Msa1229500 | 0.811650 | 6.297642e-51 | -8.615850e-47 |
| Msa0807260 | Msa1232710 | 0.800941 | 1.137691e-48 | -8.615850e-47 |
| Msa0807260 | Msa1252200 | 0.804106 | 2.532376e-49 | -8.615850e-47 |
| Msa0807260 | Msa1271990 | 0.832976 | 6.949740e-56 | -8.615850e-47 |
| Msa0807260 | Msa1277220 | 0.803051 | 4.191425e-49 | -8.615850e-47 |
| Msa0807260 | Msa1297230 | 0.801256 | 9.810146e-49 | -8.615850e-47 |
| Msa0807260 | Msa1343430 | 0.815647 | 8.303244e-52 | -8.615850e-47 |
| Msa0807260 | Msa1348090 | 0.800661 | 1.298265e-48 | -8.615850e-47 |
| Msa0807260 | Msa1353460 | 0.800324 | 1.520362e-48 | -8.615850e-47 |
| Msa0807260 | Msa1425820 | 0.807977 | 3.883816e-50 | -8.615850e-47 |
| Msa0807260 | Msa1440960 | 0.846844 | 1.682667e-59 | -8.615850e-47 |
| Msa0221000 | Msa0807260 | 0.809132 | 2.200777e-50 | -8.615850e-47 |
| Msa0225100 | Msa0807260 | 0.807547 | 4.792085e-50 | -8.615850e-47 |
| Msa0378720 | Msa0807260 | 0.827518 | 1.497044e-54 | -8.615850e-47 |
| Msa0380620 | Msa0807260 | 0.808096 | 3.663148e-50 | -8.615850e-47 |
| Msa0428370 | Msa0807260 | 0.811590 | 6.489190e-51 | -8.615850e-47 |
| Msa0430260 | Msa0807260 | 0.811020 | 8.628492e-51 | -8.615850e-47 |
| Msa0464680 | Msa0807260 | 0.807583 | 4.708169e-50 | -8.615850e-47 |
| Msa0472950 | Msa0807260 | 0.801207 | 1.003889e-48 | -8.615850e-47 |
| Msa0474730 | Msa0807260 | 0.829105 | 6.199307e-55 | -8.615850e-47 |
| Msa0261340 | Msa0807260 | 0.809725 | 1.641950e-50 | -8.615850e-47 |
| Msa0266180 | Msa0807260 | 0.800980 | 1.117113e-48 | -8.615850e-47 |
| Msa0267110 | Msa0807260 | 0.806166 | 9.385084e-50 | -8.615850e-47 |
| Msa0287740 | Msa0807260 | 0.817163 | 3.803561e-52 | -8.615850e-47 |
| Msa0292400 | Msa0807260 | 0.809739 | 1.630340e-50 | -8.615850e-47 |
| Msa0297790 | Msa0807260 | 0.804339 | 2.265085e-49 | -8.615850e-47 |
| Msa0300270 | Msa0807260 | 0.810260 | 1.259411e-50 | -8.615850e-47 |
| Msa0337700 | Msa0807260 | 0.807170 | 5.761080e-50 | -8.615850e-47 |
| Msa0527860 | Msa0807260 | 0.808484 | 3.027169e-50 | -8.615850e-47 |
| Msa0571290 | Msa0807260 | 0.812472 | 4.167814e-51 | -8.615850e-47 |
| Msa0574890 | Msa0807260 | 0.804111 | 2.527055e-49 | -8.615850e-47 |
| Msa0575920 | Msa0807260 | 0.804166 | 2.461133e-49 | -8.615850e-47 |
| Msa0597790 | Msa0807260 | 0.809701 | 1.661484e-50 | -8.615850e-47 |
| Msa0600930 | Msa0807260 | 0.806739 | 7.106092e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807260 | MtrunA17_Chr5g0422371 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 1.76e-171 | 472 |
| Msa0807260 | MtrunA17_Chr6g0456901 | 44.934 | 227 | 120 | 3 | 1 | 226 | 1 | 223 | 2.29e-60 | 190 |
| Msa0807260 | MtrunA17_Chr1g0203371 | 41.071 | 224 | 123 | 5 | 1 | 222 | 1 | 217 | 2.50e-47 | 156 |
| Msa0807260 | MtrunA17_Chr1g0161921 | 39.151 | 212 | 117 | 4 | 15 | 224 | 16 | 217 | 1.82e-42 | 143 |
| Msa0807260 | MtrunA17_Chr1g0161941 | 33.333 | 207 | 129 | 5 | 14 | 219 | 9 | 207 | 1.41e-31 | 115 |
| Msa0807260 | MtrunA17_Chr8g0375991 | 35.122 | 205 | 120 | 6 | 14 | 216 | 9 | 202 | 5.90e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807260 | AT1G26100.1 | 63.968 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 8.82e-98 | 285 |
| Msa0807260 | AT5G38630.1 | 46.222 | 225 | 109 | 6 | 10 | 228 | 10 | 228 | 2.78e-62 | 195 |
| Msa0807260 | AT4G25570.1 | 39.437 | 213 | 123 | 4 | 9 | 220 | 8 | 215 | 2.71e-44 | 149 |
| Msa0807260 | AT4G25570.2 | 39.437 | 213 | 123 | 4 | 9 | 220 | 49 | 256 | 1.31e-43 | 149 |
| Msa0807260 | AT1G14730.1 | 30.698 | 215 | 137 | 4 | 14 | 226 | 20 | 224 | 2.04e-23 | 94.7 |
Find 67 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_3:+28038980 | Msa0807260:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_3:+28038540 | Msa0807260:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | 5_3:+28041487 | Msa0807260:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_3:+28038971 | Msa0807260:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_3:+28038892 | Msa0807260:intron |
| TTGATTTGTGTATCACTCTT+TGG | 0.246496 | 5_3:+28039073 | Msa0807260:CDS |
| TAATAGGCTTCTTGAACTTT+TGG | 0.266466 | 5_3:+28041264 | Msa0807260:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_3:+28038981 | Msa0807260:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | 5_3:+28041323 | Msa0807260:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_3:+28038987 | Msa0807260:CDS |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5_3:-28038596 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5_3:+28039044 | Msa0807260:CDS |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_3:+28038972 | Msa0807260:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_3:+28038541 | Msa0807260:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_3:-28038759 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_3:-28039018 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_3:+28041449 | Msa0807260:CDS |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5_3:+28038730 | Msa0807260:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | 5_3:+28038457 | Msa0807260:exon |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | 5_3:+28041365 | Msa0807260:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | 5_3:+28041473 | Msa0807260:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_3:+28041631 | Msa0807260:three_prime_UTR |
| GTTGTAAATTCTTTAGGCTT+AGG | 0.366014 | 5_3:+28041455 | Msa0807260:CDS |
| ATTGTATTGCAGTGGCTAAT+AGG | 0.375849 | 5_3:+28041248 | Msa0807260:intron |
| CCTAAGTATCAAATTCTTCA+AGG | 0.384117 | 5_3:+28041521 | Msa0807260:CDS |
| CCTTGAAGAATTTGATACTT+AGG | 0.393626 | 5_3:-28041521 | None:intergenic |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5_3:+28038595 | Msa0807260:CDS |
| TGTATCACTCTTTGGAGCTC+AGG | 0.406685 | 5_3:+28039081 | Msa0807260:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5_3:+28038919 | Msa0807260:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_3:-28041346 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | 5_3:+28041297 | Msa0807260:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_3:+28039010 | Msa0807260:CDS |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5_3:+28039049 | Msa0807260:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_3:-28041432 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5_3:+28038918 | Msa0807260:CDS |
| ACTACTAACTACTACACTCT+TGG | 0.453368 | 5_3:-28038392 | None:intergenic |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5_3:-28038586 | None:intergenic |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_3:+28038953 | Msa0807260:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_3:+28038911 | Msa0807260:CDS |
| AAAAGCAAAGGGAGTAGTGA+GGG | 0.473857 | 5_3:-28038491 | None:intergenic |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_3:+28038723 | Msa0807260:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5_3:+28039048 | Msa0807260:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5_3:+28038920 | Msa0807260:CDS |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | 5_3:-28041487 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_3:+28038954 | Msa0807260:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | 5_3:-28041289 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_3:+28041433 | Msa0807260:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_3:+28039011 | Msa0807260:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_3:+28039018 | Msa0807260:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5_3:-28039054 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_3:+28038958 | Msa0807260:CDS |
| TGGTCACAAGCGAATTAAGA+TGG | 0.551793 | 5_3:+28041651 | Msa0807260:three_prime_UTR |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_3:+28041343 | Msa0807260:CDS |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | 5_3:-28041326 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | 5_3:+28041355 | Msa0807260:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_3:+28038912 | Msa0807260:CDS |
| GCCTAAAGAATTTACAACCA+TGG | 0.590393 | 5_3:-28041450 | None:intergenic |
| GTGAGTGAGTGACTAGTGAA+AGG | 0.593336 | 5_3:+28038413 | Msa0807260:five_prime_UTR |
| CTAACTACTACACTCTTGGA+TGG | 0.593357 | 5_3:-28038388 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5_3:-28038733 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5_3:-28038729 | None:intergenic |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5_3:+28038921 | Msa0807260:CDS |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_3:+28038955 | Msa0807260:CDS |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_3:-28038608 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5_3:-28038480 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | 5_3:+28041309 | Msa0807260:CDS |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | 5_3:+28041291 | Msa0807260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTAAATAAATATTA+AGG | + | chr5_3:28039292-28039311 | Msa0807260:intron | 0.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5_3:28038664-28038683 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5_3:28038665-28038684 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5_3:28038702-28038721 | Msa0807260:intron | 10.0% |
| !!! | AAAAAATTCTGAAATTTTTT+TGG | + | chr5_3:28039874-28039893 | Msa0807260:intron | 10.0% |
| !!! | AAATTTTAAATGAAATTGAA+AGG | - | chr5_3:28040376-28040395 | None:intergenic | 10.0% |
| !! | TTAACTATTAATTTAAGAAT+TGG | + | chr5_3:28040990-28041009 | Msa0807260:intron | 10.0% |
| !!! | TTCTAAGATTAATTTTTACT+TGG | + | chr5_3:28039149-28039168 | Msa0807260:intron | 15.0% |
| !!! | TCTAAGATTAATTTTTACTT+GGG | + | chr5_3:28039150-28039169 | Msa0807260:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr5_3:28039677-28039696 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+AGG | + | chr5_3:28039990-28040009 | Msa0807260:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr5_3:28040050-28040069 | Msa0807260:intron | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_3:28038795-28038814 | Msa0807260:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_3:28038796-28038815 | Msa0807260:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_3:28038800-28038819 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_3:28038801-28038820 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_3:28038802-28038821 | Msa0807260:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5_3:28038835-28038854 | Msa0807260:intron | 20.0% |
| !!! | AATTTTATTTCCTGATGAAT+AGG | - | chr5_3:28039279-28039298 | None:intergenic | 20.0% |
| !!! | TTAGCTTATGAAATGATTTT+TGG | + | chr5_3:28039351-28039370 | Msa0807260:intron | 20.0% |
| !!! | ATTTTGTATTTTCCTTCTTT+GGG | - | chr5_3:28039512-28039531 | None:intergenic | 20.0% |
| !!! | TAAAAAGAACATGAAAGTAT+AGG | - | chr5_3:28039574-28039593 | None:intergenic | 20.0% |
| !!! | TATACTTTCATGTTCTTTTT+AGG | + | chr5_3:28039573-28039592 | Msa0807260:intron | 20.0% |
| !!! | ATACTTTCATGTTCTTTTTA+GGG | + | chr5_3:28039574-28039593 | Msa0807260:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr5_3:28039617-28039636 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr5_3:28039678-28039697 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr5_3:28039958-28039977 | Msa0807260:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr5_3:28039959-28039978 | Msa0807260:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr5_3:28039986-28040005 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr5_3:28040049-28040068 | Msa0807260:intron | 20.0% |
| !!! | AGAATGGTTAAATATGTTTT+TGG | - | chr5_3:28040077-28040096 | None:intergenic | 20.0% |
| !! | AATCGTGAAATTAAAAAGAA+TGG | - | chr5_3:28040093-28040112 | None:intergenic | 20.0% |
| !! | AATTCTATTATTATCCCATA+TGG | + | chr5_3:28040200-28040219 | Msa0807260:intron | 20.0% |
| !! | AATATTTATTCGATCCATAT+GGG | - | chr5_3:28040217-28040236 | None:intergenic | 20.0% |
| !!! | TTGTCAAAAGTTTTTCAATT+AGG | + | chr5_3:28040255-28040274 | Msa0807260:intron | 20.0% |
| !! | CAAAAAATTTGAACAAAAGA+GGG | + | chr5_3:28040484-28040503 | Msa0807260:intron | 20.0% |
| !! | AAAAAATTTGAACAAAAGAG+GGG | + | chr5_3:28040485-28040504 | Msa0807260:intron | 20.0% |
| !! | CTTATGCAAATTTATTAGTT+AGG | - | chr5_3:28040587-28040606 | None:intergenic | 20.0% |
| !! | CTCAAATAATGATAACTAAT+TGG | - | chr5_3:28040613-28040632 | None:intergenic | 20.0% |
| !!! | ATTCACAAATTAAGCTATTT+TGG | + | chr5_3:28040653-28040672 | Msa0807260:intron | 20.0% |
| !!! | TTAGTGTATACATAATCTTT+TGG | + | chr5_3:28041146-28041165 | Msa0807260:intron | 20.0% |
| !!! | TAGTGTATACATAATCTTTT+GGG | + | chr5_3:28041147-28041166 | Msa0807260:intron | 20.0% |
| !!! | GTGTATAGATATTTTATGTA+TGG | + | chr5_3:28041180-28041199 | Msa0807260:intron | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_3:28041631-28041650 | Msa0807260:three_prime_UTR | 20.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | + | chr5_3:28038457-28038476 | Msa0807260:exon | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5_3:28038748-28038767 | Msa0807260:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_3:28039010-28039029 | Msa0807260:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_3:28039011-28039030 | Msa0807260:CDS | 25.0% |
| ! | AATATGCACTAAATATGTGA+TGG | + | chr5_3:28039405-28039424 | Msa0807260:intron | 25.0% |
| ! | ATTGTACTAACTAGCTAAAT+TGG | - | chr5_3:28039467-28039486 | None:intergenic | 25.0% |
| !! | CATTTTGTATTTTCCTTCTT+TGG | - | chr5_3:28039513-28039532 | None:intergenic | 25.0% |
| !! | TCGTCTTGTTGTAAAAATTT+AGG | + | chr5_3:28039547-28039566 | Msa0807260:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr5_3:28039618-28039637 | None:intergenic | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | + | chr5_3:28040005-28040024 | Msa0807260:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5_3:28040018-28040037 | Msa0807260:intron | 25.0% |
| ! | CAATATTTATTCGATCCATA+TGG | - | chr5_3:28040218-28040237 | None:intergenic | 25.0% |
| ! | ATCATAAGAGAAAATATACG+AGG | - | chr5_3:28040344-28040363 | None:intergenic | 25.0% |
| !! | CCTCTTTTGTTCAAATTTTT+TGG | - | chr5_3:28040486-28040505 | None:intergenic | 25.0% |
| ! | CCAAAAAATTTGAACAAAAG+AGG | + | chr5_3:28040483-28040502 | Msa0807260:intron | 25.0% |
| !!! | TCAAAAAGTATTTTCCATGT+AGG | + | chr5_3:28040522-28040541 | Msa0807260:intron | 25.0% |
| !!! | ATTACATTTTTTCTCCTACA+TGG | - | chr5_3:28040539-28040558 | None:intergenic | 25.0% |
| ! | ATGCAAATTTATTAGTTAGG+AGG | - | chr5_3:28040584-28040603 | None:intergenic | 25.0% |
| !!! | CAAATTAAGCTATTTTGGTA+CGG | + | chr5_3:28040658-28040677 | Msa0807260:intron | 25.0% |
| ! | AACTCTCTATTTCATACAAA+TGG | - | chr5_3:28040710-28040729 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5_3:28041037-28041056 | Msa0807260:intron | 25.0% |
| !! | AGTGTATACATAATCTTTTG+GGG | + | chr5_3:28041148-28041167 | Msa0807260:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_3:28038647-28038666 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_3:28038754-28038773 | Msa0807260:CDS | 30.0% |
| !! | TTGATTTGTGTATCACTCTT+TGG | + | chr5_3:28039073-28039092 | Msa0807260:CDS | 30.0% |
| ! | AGACTCTTTTGTATCAGTTT+TGG | + | chr5_3:28039324-28039343 | Msa0807260:intron | 30.0% |
| AACTAGCTAAATTGGAAAGT+AGG | - | chr5_3:28039459-28039478 | None:intergenic | 30.0% | |
| !! | AGTCGAAGGAATATTTTAGA+GGG | - | chr5_3:28039648-28039667 | None:intergenic | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | - | chr5_3:28039649-28039668 | None:intergenic | 30.0% |
| AGATTCTATGAGAGTTAACT+TGG | - | chr5_3:28040439-28040458 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTTTCG+TGG | - | chr5_3:28040473-28040492 | None:intergenic | 30.0% |
| ATGCATAATATATGCAAGGT+TGG | + | chr5_3:28041041-28041060 | Msa0807260:intron | 30.0% | |
| TTCAACATATTGTATTGCAG+TGG | + | chr5_3:28041240-28041259 | Msa0807260:intron | 30.0% | |
| ! | TAATAGGCTTCTTGAACTTT+TGG | + | chr5_3:28041264-28041283 | Msa0807260:CDS | 30.0% |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_3:28041449-28041468 | Msa0807260:CDS | 30.0% | |
| GTTGTAAATTCTTTAGGCTT+AGG | + | chr5_3:28041455-28041474 | Msa0807260:CDS | 30.0% | |
| CCTTGAAGAATTTGATACTT+AGG | - | chr5_3:28041524-28041543 | None:intergenic | 30.0% | |
| CCTAAGTATCAAATTCTTCA+AGG | + | chr5_3:28041521-28041540 | Msa0807260:CDS | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | + | chr5_3:28041546-28041565 | Msa0807260:CDS | 30.0% |
| ACTACTAACTACTACACTCT+TGG | - | chr5_3:28038395-28038414 | None:intergenic | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_3:28038540-28038559 | Msa0807260:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_3:28038541-28038560 | Msa0807260:CDS | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5_3:28038589-28038608 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_3:28038762-28038781 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_3:28038892-28038911 | Msa0807260:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_3:28038981-28039000 | Msa0807260:CDS | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5_3:28039044-28039063 | Msa0807260:CDS | 35.0% | |
| TATCTTGACACCTATTCATC+AGG | + | chr5_3:28039266-28039285 | Msa0807260:intron | 35.0% | |
| TTGGGTCAGAATTCTCTAAT+TGG | - | chr5_3:28039494-28039513 | None:intergenic | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | - | chr5_3:28039662-28039681 | None:intergenic | 35.0% | |
| AACAAAAGAGGGGCAAAAAT+AGG | + | chr5_3:28040495-28040514 | Msa0807260:intron | 35.0% | |
| TTTGAGTATGCGAGATTATG+CGG | + | chr5_3:28040627-28040646 | Msa0807260:intron | 35.0% | |
| !!! | TTAAGCTATTTTGGTACGGT+TGG | + | chr5_3:28040662-28040681 | Msa0807260:intron | 35.0% |
| TGGTTAGAGTTTAACTCAGT+TGG | + | chr5_3:28041010-28041029 | Msa0807260:intron | 35.0% | |
| TTAGAGTTTAACTCAGTTGG+TGG | + | chr5_3:28041013-28041032 | Msa0807260:intron | 35.0% | |
| TAGAGTTTAACTCAGTTGGT+GGG | + | chr5_3:28041014-28041033 | Msa0807260:intron | 35.0% | |
| AATCCAGACACTACAAAGAT+TGG | + | chr5_3:28041070-28041089 | Msa0807260:intron | 35.0% | |
| TAACCAATCTTTGTAGTGTC+TGG | - | chr5_3:28041076-28041095 | None:intergenic | 35.0% | |
| ATTGTATTGCAGTGGCTAAT+AGG | + | chr5_3:28041248-28041267 | Msa0807260:intron | 35.0% | |
| TTACCATGGCATGTATTTCT+TGG | + | chr5_3:28041323-28041342 | Msa0807260:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_3:28041453-28041472 | None:intergenic | 35.0% | |
| CTAACTACTACACTCTTGGA+TGG | - | chr5_3:28038391-28038410 | None:intergenic | 40.0% | |
| AAAAGCAAAGGGAGTAGTGA+GGG | - | chr5_3:28038494-28038513 | None:intergenic | 40.0% | |
| AAAAAGCAAAGGGAGTAGTG+AGG | - | chr5_3:28038495-28038514 | None:intergenic | 40.0% | |
| CTCTCGCAAGAAAAAGCAAA+GGG | - | chr5_3:28038505-28038524 | None:intergenic | 40.0% | |
| ACTCTCGCAAGAAAAAGCAA+AGG | - | chr5_3:28038506-28038525 | None:intergenic | 40.0% | |
| ! | CTTTTTCTTGCGAGAGTTTG+TGG | + | chr5_3:28038509-28038528 | Msa0807260:CDS | 40.0% |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5_3:28038595-28038614 | Msa0807260:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5_3:28038599-28038618 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_3:28038903-28038922 | Msa0807260:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_3:28038953-28038972 | Msa0807260:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_3:28038954-28038973 | Msa0807260:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_3:28038955-28038974 | Msa0807260:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_3:28038980-28038999 | Msa0807260:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_3:28038987-28039006 | Msa0807260:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_3:28039021-28039040 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_3:28039018-28039037 | Msa0807260:CDS | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5_3:28039049-28039068 | Msa0807260:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_3:28039057-28039076 | None:intergenic | 40.0% | |
| !! | TGAATGATTGATGACGACCT+CGG | + | chr5_3:28039432-28039451 | Msa0807260:intron | 40.0% |
| TAAATTGGAAAGTAGGTCCG+AGG | - | chr5_3:28039452-28039471 | None:intergenic | 40.0% | |
| AGAGAATTCTGACCCAAAGA+AGG | + | chr5_3:28039497-28039516 | Msa0807260:intron | 40.0% | |
| ACAAGACGAATGCTTCTGTT+GGG | - | chr5_3:28039536-28039555 | None:intergenic | 40.0% | |
| AACAAGACGAATGCTTCTGT+TGG | - | chr5_3:28039537-28039556 | None:intergenic | 40.0% | |
| ! | AGAGTTTAACTCAGTTGGTG+GGG | + | chr5_3:28041015-28041034 | Msa0807260:intron | 40.0% |
| AAATGCGAACAGTGAGGATA+AGG | + | chr5_3:28041297-28041316 | Msa0807260:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | + | chr5_3:28041309-28041328 | Msa0807260:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_3:28041343-28041362 | Msa0807260:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_3:28041349-28041368 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_3:28041355-28041374 | Msa0807260:CDS | 40.0% |
| CCAGAATAACAAAGCCACTA+AGG | - | chr5_3:28041490-28041509 | None:intergenic | 40.0% | |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | + | chr5_3:28041487-28041506 | Msa0807260:CDS | 40.0% |
| TGGTCACAAGCGAATTAAGA+TGG | + | chr5_3:28041651-28041670 | Msa0807260:three_prime_UTR | 40.0% | |
| GTGAGTGAGTGACTAGTGAA+AGG | + | chr5_3:28038413-28038432 | Msa0807260:five_prime_UTR | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_3:28038611-28038630 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5_3:28038736-28038755 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5_3:28038934-28038953 | Msa0807260:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_3:28038958-28038977 | Msa0807260:CDS | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5_3:28039048-28039067 | Msa0807260:CDS | 45.0% | |
| !! | TGTATCACTCTTTGGAGCTC+AGG | + | chr5_3:28039081-28039100 | Msa0807260:CDS | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_3:28041272-28041291 | Msa0807260:CDS | 45.0% |
| TCACTGTTCGCATTTCTCCT+CGG | - | chr5_3:28041292-28041311 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | - | chr5_3:28041329-28041348 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | + | chr5_3:28041473-28041492 | Msa0807260:CDS | 45.0% | |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr5_3:28039708-28039727 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr5_3:28039709-28039728 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | - | chr5_3:28039781-28039800 | None:intergenic | 5.0% |
| !!! | TATAATATTTTGAATTTTTT+TGG | + | chr5_3:28039906-28039925 | Msa0807260:intron | 5.0% |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5_3:28038483-28038502 | None:intergenic | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_3:28038732-28038751 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_3:28038730-28038749 | Msa0807260:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_3:28038911-28038930 | Msa0807260:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_3:28038912-28038931 | Msa0807260:CDS | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_3:28038918-28038937 | Msa0807260:CDS | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_3:28038919-28038938 | Msa0807260:CDS | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_3:28038972-28038991 | Msa0807260:CDS | 50.0% |
| GAGGAGAAATGCGAACAGTG+AGG | + | chr5_3:28041291-28041310 | Msa0807260:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_3:28041435-28041454 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_3:28041433-28041452 | Msa0807260:CDS | 50.0% |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_3:28038723-28038742 | Msa0807260:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_3:28038920-28038939 | Msa0807260:CDS | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5_3:28038932-28038951 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_3:28038971-28038990 | Msa0807260:CDS | 55.0% |
| GCAGTAGCAACGGCTGAAAC+TGG | + | chr5_3:28041365-28041384 | Msa0807260:CDS | 55.0% | |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5_3:28038921-28038940 | Msa0807260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 28038380 | 28041687 | 28038380 | ID=Msa0807260;Name=Msa0807260 |
| chr5_3 | mRNA | 28038380 | 28041687 | 28038380 | ID=Msa0807260-mRNA-1;Parent=Msa0807260;Name=Msa0807260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|1|1|4|104|242 |
| chr5_3 | exon | 28038380 | 28038631 | 28038380 | ID=Msa0807260-mRNA-1:exon:9988;Parent=Msa0807260-mRNA-1 |
| chr5_3 | exon | 28038724 | 28038775 | 28038724 | ID=Msa0807260-mRNA-1:exon:9989;Parent=Msa0807260-mRNA-1 |
| chr5_3 | exon | 28038906 | 28039102 | 28038906 | ID=Msa0807260-mRNA-1:exon:9990;Parent=Msa0807260-mRNA-1 |
| chr5_3 | exon | 28041260 | 28041687 | 28041260 | ID=Msa0807260-mRNA-1:exon:9991;Parent=Msa0807260-mRNA-1 |
| chr5_3 | five_prime_UTR | 28038380 | 28038475 | 28038380 | ID=Msa0807260-mRNA-1:five_prime_utr;Parent=Msa0807260-mRNA-1 |
| chr5_3 | CDS | 28038476 | 28038631 | 28038476 | ID=Msa0807260-mRNA-1:cds;Parent=Msa0807260-mRNA-1 |
| chr5_3 | CDS | 28038724 | 28038775 | 28038724 | ID=Msa0807260-mRNA-1:cds;Parent=Msa0807260-mRNA-1 |
| chr5_3 | CDS | 28038906 | 28039102 | 28038906 | ID=Msa0807260-mRNA-1:cds;Parent=Msa0807260-mRNA-1 |
| chr5_3 | CDS | 28041260 | 28041583 | 28041260 | ID=Msa0807260-mRNA-1:cds;Parent=Msa0807260-mRNA-1 |
| chr5_3 | three_prime_UTR | 28041584 | 28041687 | 28041584 | ID=Msa0807260-mRNA-1:three_prime_utr;Parent=Msa0807260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
