AlfalfaGEDB | Msa1426140

M. sativa cultivar zhongmu-4 / Msa1426140

KEGG: -
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0042579 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF01344.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426140	XP_013445739.1	98.994	497	5	0	1	497	1	497	0.0	1024

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426140	sp\|Q8L736\|SKI11_ARATH	58.465	508	159	11	1	497	1	467	0.0	555

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426140	A0A072U1V1	98.994	497	5	0	1	497	1	497	0.0	1024

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0779230	Msa1426140	0.802711	4.927853e-49	-8.615850e-47
Msa0866910	Msa1426140	0.983266	2.829058e-157	-8.615850e-47
Msa1196490	Msa1426140	0.847429	1.162726e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426140	MtrunA17_Chr8g0362081	98.994	497	5	0	1	497	1	497	0.0	1024
Msa1426140	MtrunA17_Chr5g0416461	73.137	510	90	7	1	497	1	476	0.0	746
Msa1426140	MtrunA17_Chr4g0060541	62.803	371	135	2	130	497	10	380	3.76e-175	497
Msa1426140	MtrunA17_Chr4g0011151	62.323	353	132	1	145	497	97	448	7.89e-164	471
Msa1426140	MtrunA17_Chr4g0011171	62.040	353	133	1	145	497	97	448	1.50e-162	468
Msa1426140	MtrunA17_Chr4g0011161	61.473	353	135	1	145	497	97	448	3.65e-162	467
Msa1426140	MtrunA17_Chr4g0011221	62.323	353	132	1	145	497	97	448	3.65e-162	467
Msa1426140	MtrunA17_Chr4g0010131	60.833	360	134	2	138	497	59	411	1.06e-160	461
Msa1426140	MtrunA17_Chr4g0010161	60.169	354	140	1	144	497	62	414	3.06e-154	445
Msa1426140	MtrunA17_Chr2g0326541	51.130	354	160	4	149	497	19	364	3.62e-117	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426140	AT2G02870.2	58.465	508	159	11	1	497	1	467	0.0	555
Msa1426140	AT2G02870.3	58.465	508	159	11	1	497	1	467	0.0	555
Msa1426140	AT2G02870.1	58.465	508	159	11	1	497	1	467	0.0	555
Msa1426140	AT1G14330.1	69.841	378	108	3	123	497	67	441	0.0	541
Msa1426140	AT1G26930.1	67.935	368	115	1	133	497	54	421	0.0	525
Msa1426140	AT1G74510.2	65.169	356	115	2	151	497	96	451	8.38e-169	484
Msa1426140	AT1G74510.1	65.169	356	115	2	151	497	96	451	8.38e-169	484
Msa1426140	AT1G74510.3	65.169	356	115	2	151	497	96	451	8.38e-169	484
Msa1426140	AT1G26930.2	57.609	368	101	2	133	497	54	369	9.18e-147	425
Msa1426140	AT5G60570.2	47.297	370	180	6	134	497	33	393	1.81e-109	330

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Find 143 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACCTCGGAACCAAGC+AGG	0.584981	tig0025952:-11311	None:intergenic
AAACCCTCACCATGACTCCT+TGG	0.496562	tig0025952:-12657	None:intergenic
AACAAAGTATGGCTTACAAT+TGG	0.470901	tig0025952:+12549	Msa1426140:CDS
AACAGAAGCAGCATCATGCA+GGG	0.580432	tig0025952:+11698	Msa1426140:CDS
AACGATAGAGCTCACCGCTC+CGG	0.499104	tig0025952:-11849	None:intergenic
AAGCCCAGGAAGATGTGCTC+TGG	0.455338	tig0025952:+12273	Msa1426140:CDS
AATCTCCTGTTAACCTTCCT+CGG	0.429428	tig0025952:-11445	None:intergenic
AATTCATGGGTTCCTAGTGA+AGG	0.624631	tig0025952:+12690	Msa1426140:CDS
AATTCTTCAGCATCCCATCA+CGG	0.626137	tig0025952:-12772	None:intergenic
ACAATTTACAGACTAGAACA+TGG	0.682806	tig0025952:+12376	Msa1426140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCGGATTTGGAAATAAAAAA+CGG	+	tig0025952:11388-11407	Msa1426140:CDS	30.0%
GAAATAAAAAACGGTAAACG+AGG	+	tig0025952:11397-11416	Msa1426140:CDS	30.0%
GACTGTATCTGTATATAACA+TGG	-	tig0025952:12071-12090	None:intergenic	30.0%
ACAATTTACAGACTAGAACA+TGG	+	tig0025952:12376-12395	Msa1426140:CDS	30.0%
TTATTTACAACAGCTACTAG+AGG	-	tig0025952:12474-12493	None:intergenic	30.0%
ACGATAAAGGTAACAAAGTA+TGG	+	tig0025952:12538-12557	Msa1426140:CDS	30.0%
AACAAAGTATGGCTTACAAT+TGG	+	tig0025952:12549-12568	Msa1426140:CDS	30.0%
CCGGATTTGGAAATAAAAAA+CGG	+	tig0025952:11388-11407	Msa1426140:CDS	30.0%
GAAATAAAAAACGGTAAACG+AGG	+	tig0025952:11397-11416	Msa1426140:CDS	30.0%
GACTGTATCTGTATATAACA+TGG	-	tig0025952:12071-12090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0025952	gene	11295	12788	11295	ID=Msa1426140;Name=Msa1426140
tig0025952	mRNA	11295	12788	11295	ID=Msa1426140-mRNA-1;Parent=Msa1426140;Name=Msa1426140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|497
tig0025952	exon	11295	12788	11295	ID=Msa1426140-mRNA-1:exon:4697;Parent=Msa1426140-mRNA-1
tig0025952	CDS	11295	12788	11295	ID=Msa1426140-mRNA-1:cds;Parent=Msa1426140-mRNA-1

Gene Sequence

>Msa1426140

ATGTTGGAAGGTCGTTCCTGCTTGGTTCCGAGGTTGTTTTCCAGTTCTTGTCAGGCAGAGGCAGAGAACAATTGGTCTTTCATGAAATTCATGCCGGATTTGGAAATAAAAAACGGTAAACGAGGTATTGATGATGAAGATGAACCGCAGCCGAGGAAGGTTAACAGGAGATTGGAATCTTGTTATCAAGGTGAGATGGATTCTGTTGTTCCGCAAATCGATCTGGACGATGATCAGAGGAAGGATTTTGAGCCATTGAATGATTGCCAAAGTGTGGAAAATGTTGTTGCTTTTTCTGTCCTGTTTTTGGCTGAAAAATCGCAGCATTCGTTCGGTGATGAACTGCAGAAGAAGCAGCTTGATGATGGGAATTTGATTAATTCCACTGACGAGCCGACGGATGAACAGAAGCAGCATCATGCAGGGGATTCATCAGATTCAAGTTCACTTTTGCCGCGCATGAATCGGGACAGCTCGATTACCTGTCTAAGCCGATGTTCAAGGTCTGATTATGGTTCACTTGCCTCGTTGAATCAGAGCTTCCGCAACATAATCCGGAGCGGTGAGCTCTATCGTTGGAGGAGACTGAATGGTATCATAGAGCACTGGATTTATTTTTCCTGTGCCCTCCTCGAATGGGAGGCCTATGATCCAATTCGCGAACGGTGGATGCATTTACCTAGAATGGCTTCCAACGAATGCTTCATGTGTTCGGATAAGGAGTCTTTAGCGGTAGGTACCGAACTTCTTGTGTTTGGGAGGGAGTTGCAATCCCATGTTATATACAGATACAGTCTTTTGACAAACTCGTGGGAATCTGGAATGAGGATGAATTTTCCAAGATGCTTGTTTGGTTCTGCTAGCCTCAGAGAGATTGCAATTCTAGCTGGCGGTTGTGATTCAGATGGGCATATCCTTGACTCGGCTGAACTCTATAACTCCGAGAATCAAACATGGGAAACACTCCCAAACATGATCAAGCCCAGGAAGATGTGCTCTGGGGTATTCATGGATGGAAATTTTTATGTTATCGGGGGAATCGGTGGACGCGATTCCAAGCTTCTTACCTGCGGTGAGGAGTACAATTTACAGACTAGAACATGGAAAGAAATTCCTAACATGTCACCCGGACGTAGTGCTAGGGGATCGGAAATGCCTGCCACAGCCGAGGCACCACCTCTAGTAGCTGTTGTAAATAATGAACTATACGCCGCTGATTATGCTGACATGGAGGTTAAAAAGTACGATAAAGGTAACAAAGTATGGCTTACAATTGGTAGATTACCGGAGAGAGCGGCGTCGATGAACGGTTGGGGTCTTGCATTTAGGGCATGTGGAGATAGGCTTATTGTTATTGGCGGACCAAGGAGTCATGGTGAGGGTTTTATTGAACTCAATTCATGGGTTCCTAGTGAAGGACCTCCACAATGGAATCTACTTGCTAGAAAACAATCCGGTAACTTTGTTTATAATTGCGCCGTGATGGGATGCTGA

Protein sequence

>Msa1426140

MLEGRSCLVPRLFSSSCQAEAENNWSFMKFMPDLEIKNGKRGIDDEDEPQPRKVNRRLESCYQGEMDSVVPQIDLDDDQRKDFEPLNDCQSVENVVAFSVLFLAEKSQHSFGDELQKKQLDDGNLINSTDEPTDEQKQHHAGDSSDSSSLLPRMNRDSSITCLSRCSRSDYGSLASLNQSFRNIIRSGELYRWRRLNGIIEHWIYFSCALLEWEAYDPIRERWMHLPRMASNECFMCSDKESLAVGTELLVFGRELQSHVIYRYSLLTNSWESGMRMNFPRCLFGSASLREIAILAGGCDSDGHILDSAELYNSENQTWETLPNMIKPRKMCSGVFMDGNFYVIGGIGGRDSKLLTCGEEYNLQTRTWKEIPNMSPGRSARGSEMPATAEAPPLVAVVNNELYAADYADMEVKKYDKGNKVWLTIGRLPERAASMNGWGLAFRACGDRLIVIGGPRSHGEGFIELNSWVPSEGPPQWNLLARKQSGNFVYNCAVMGC*