Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426660 | XP_013450601.1 | 81.346 | 327 | 31 | 4 | 1 | 297 | 1 | 327 | 3.34e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426660 | sp|Q9M363|B561I_ARATH | 41.297 | 293 | 136 | 9 | 37 | 296 | 32 | 321 | 3.17e-66 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426660 | A0A072U4F8 | 81.346 | 327 | 31 | 4 | 1 | 297 | 1 | 327 | 1.59e-176 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1426660 | Msa1446110 | 0.830452 | 2.914427e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426660 | MtrunA17_Chr7g0275621 | 81.346 | 327 | 31 | 4 | 1 | 297 | 1 | 327 | 3.07e-180 | 503 |
| Msa1426660 | MtrunA17_Chr8g0347591 | 29.795 | 292 | 157 | 10 | 44 | 296 | 44 | 326 | 1.11e-33 | 126 |
| Msa1426660 | MtrunA17_Chr8g0347581 | 33.523 | 176 | 99 | 6 | 36 | 194 | 28 | 202 | 2.59e-20 | 88.6 |
| Msa1426660 | MtrunA17_Chr8g0347601 | 28.902 | 173 | 105 | 5 | 39 | 194 | 23 | 194 | 5.23e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426660 | AT3G61750.1 | 41.297 | 293 | 136 | 9 | 37 | 296 | 32 | 321 | 3.22e-67 | 215 |
| Msa1426660 | AT3G61750.2 | 41.057 | 246 | 111 | 7 | 82 | 296 | 2 | 244 | 2.78e-53 | 177 |
| Msa1426660 | AT3G07570.1 | 28.205 | 312 | 176 | 10 | 26 | 296 | 11 | 315 | 5.85e-29 | 114 |
Find 86 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGCTGAAATTTATT+TGG | 0.168870 | tig0026054:+67270 | Msa1426660:CDS |
| TGCATTTCAAGTTTGGAATT+TGG | 0.193087 | tig0026054:-65969 | None:intergenic |
| ACTACCATTGTTCCTATCTT+TGG | 0.226002 | tig0026054:+66068 | Msa1426660:five_prime_UTR |
| GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | tig0026054:-67331 | None:intergenic |
| CGAAACTTGGAATCCCTATT+TGG | 0.245262 | tig0026054:-68611 | None:intergenic |
| AGAAAGAATCATGGAATAAT+TGG | 0.246187 | tig0026054:+68139 | Msa1426660:CDS |
| CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | tig0026054:+68597 | Msa1426660:CDS |
| GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | tig0026054:+68279 | Msa1426660:CDS |
| CATTCAATCATTCAATTTGT+TGG | 0.280269 | tig0026054:+68246 | Msa1426660:CDS |
| AGTCTCTTGCATTTCAAGTT+TGG | 0.289905 | tig0026054:-65976 | None:intergenic |
| TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | tig0026054:-66293 | None:intergenic |
| CATGGAATAATTGGTATTAT+AGG | 0.308367 | tig0026054:+68148 | Msa1426660:CDS |
| AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | tig0026054:+66112 | Msa1426660:exon |
| CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | tig0026054:+67253 | Msa1426660:CDS |
| CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | tig0026054:+68364 | Msa1426660:CDS |
| CAATTTGTTGGATTTGCATT+TGG | 0.319893 | tig0026054:+68258 | Msa1426660:CDS |
| CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | tig0026054:+67075 | Msa1426660:CDS |
| CTTCAAACAACAATTCCATT+TGG | 0.339138 | tig0026054:+67301 | Msa1426660:CDS |
| CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | tig0026054:+67254 | Msa1426660:CDS |
| ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | tig0026054:+67081 | Msa1426660:CDS |
| AACTTCAATACCATTGCATT+AGG | 0.373456 | tig0026054:+66185 | Msa1426660:CDS |
| CTCTCAACTGTCTTGTTGTT+AGG | 0.381805 | tig0026054:+66004 | Msa1426660:five_prime_UTR |
| ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | tig0026054:+68598 | Msa1426660:CDS |
| GCAGCAGGCACGTTATTTAG+AGG | 0.384723 | tig0026054:-67238 | None:intergenic |
| ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | tig0026054:+68332 | Msa1426660:CDS |
| AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | tig0026054:-67316 | None:intergenic |
| CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | tig0026054:+67076 | Msa1426660:CDS |
| AATTCATATGTATGCCAAAC+GGG | 0.434998 | tig0026054:-66305 | None:intergenic |
| CTCCAATATGCAAACCCGTT+TGG | 0.444241 | tig0026054:+66291 | Msa1426660:CDS |
| CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | tig0026054:-67253 | None:intergenic |
| ATCTTTGGATCACACTGATC+TGG | 0.464570 | tig0026054:+66083 | Msa1426660:five_prime_UTR |
| TCTCATTTGAATCAAACCAT+TGG | 0.474801 | tig0026054:-68119 | None:intergenic |
| GATCAGTGTGATCCAAAGAT+AGG | 0.481592 | tig0026054:-66080 | None:intergenic |
| TGAATCAAACCATTGGATGC+TGG | 0.484210 | tig0026054:-68112 | None:intergenic |
| ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | tig0026054:+68130 | Msa1426660:CDS |
| TCAAACATAAGGAACCCCTT+TGG | 0.493885 | tig0026054:+68214 | Msa1426660:intron |
| TGTCATCATGCTTTGACAGA+TGG | 0.495892 | tig0026054:-67372 | None:intergenic |
| ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | tig0026054:+67074 | Msa1426660:CDS |
| TTGGCATACATATGAATTGA+GGG | 0.509114 | tig0026054:+66310 | Msa1426660:CDS |
| CTGGTATGTGGACATGCATT+GGG | 0.510812 | tig0026054:-68316 | None:intergenic |
| CCCACCCACCCAACTGTGTA+GGG | 0.511172 | tig0026054:-67075 | None:intergenic |
| ATGCATATCCTAACAAAAGA+TGG | 0.513584 | tig0026054:-66146 | None:intergenic |
| TGTGGAATTTGTACCACAGT+TGG | 0.515734 | tig0026054:+68639 | Msa1426660:CDS |
| TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | tig0026054:+67255 | Msa1426660:CDS |
| ATTTCAAGTTTGGAATTTGG+TGG | 0.522605 | tig0026054:-65966 | None:intergenic |
| GGTCGGTTCAAGTGCAATGG+TGG | 0.531243 | tig0026054:+67125 | Msa1426660:CDS |
| GATATGTTCTGATAAGGTGG+AGG | 0.531436 | tig0026054:-66266 | None:intergenic |
| GATGATATGTTCTGATAAGG+TGG | 0.532974 | tig0026054:-66269 | None:intergenic |
| CAATTCATATGTATGCCAAA+CGG | 0.533146 | tig0026054:-66306 | None:intergenic |
| TATCTGCACCCTACACAGTT+GGG | 0.533408 | tig0026054:+67067 | Msa1426660:CDS |
| ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | tig0026054:+68621 | Msa1426660:CDS |
| GGAGATGATATGTTCTGATA+AGG | 0.538172 | tig0026054:-66272 | None:intergenic |
| TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | tig0026054:+66123 | Msa1426660:CDS |
| TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | tig0026054:-68328 | None:intergenic |
| ACACTGATCTGGTCTATGAA+TGG | 0.544015 | tig0026054:+66094 | Msa1426660:exon |
| CTGCACCCTACACAGTTGGG+TGG | 0.544650 | tig0026054:+67070 | Msa1426660:CDS |
| ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | tig0026054:-68335 | None:intergenic |
| TTATCTGCACCCTACACAGT+TGG | 0.554095 | tig0026054:+67066 | Msa1426660:CDS |
| TTTGGCATACATATGAATTG+AGG | 0.559705 | tig0026054:+66309 | Msa1426660:CDS |
| ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | tig0026054:-67353 | None:intergenic |
| TGTTCTGATAAGGTGGAGGG+AGG | 0.564304 | tig0026054:-66262 | None:intergenic |
| TTGAATGTAGATAGAACCAA+AGG | 0.567909 | tig0026054:-68230 | None:intergenic |
| AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | tig0026054:+67243 | Msa1426660:CDS |
| GCTGGTATGTGGACATGCAT+TGG | 0.581376 | tig0026054:-68317 | None:intergenic |
| GTTCAAGTGCAATGGTGGGA+TGG | 0.583060 | tig0026054:+67130 | Msa1426660:CDS |
| TGCACCCTACACAGTTGGGT+GGG | 0.592706 | tig0026054:+67071 | Msa1426660:CDS |
| TGAATGTAGATAGAACCAAA+GGG | 0.600269 | tig0026054:-68229 | None:intergenic |
| AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | tig0026054:-68293 | None:intergenic |
| TCTATGGATCCAGCATCCAA+TGG | 0.602260 | tig0026054:+68103 | Msa1426660:CDS |
| CCCCACCCACCCAACTGTGT+AGG | 0.602301 | tig0026054:-67076 | None:intergenic |
| ATATGTTCTGATAAGGTGGA+GGG | 0.605129 | tig0026054:-66265 | None:intergenic |
| CCTGAAGAATACTTAGCACA+AGG | 0.616760 | tig0026054:-68364 | None:intergenic |
| ACAAAACTCAAGAATAAGAG+AGG | 0.617617 | tig0026054:-66044 | None:intergenic |
| TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | tig0026054:+67208 | Msa1426660:CDS |
| AATGGTCGGTTCAAGTGCAA+TGG | 0.628638 | tig0026054:+67122 | Msa1426660:CDS |
| TGATCCAAAGATAGGAACAA+TGG | 0.629638 | tig0026054:-66072 | None:intergenic |
| AGGAGATGACACAACATCGT+CGG | 0.644400 | tig0026054:+66205 | Msa1426660:CDS |
| TGCAGATAATATGATTGTTG+TGG | 0.646735 | tig0026054:-67052 | None:intergenic |
| CATCGTCGGAAAGTACATGC+AGG | 0.648599 | tig0026054:+66219 | Msa1426660:CDS |
| GTCGGTTCAAGTGCAATGGT+GGG | 0.660569 | tig0026054:+67126 | Msa1426660:CDS |
| TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | tig0026054:-66195 | None:intergenic |
| TTTGACAGATGGTGTTCATG+TGG | 0.686431 | tig0026054:-67361 | None:intergenic |
| GAATGTAGATAGAACCAAAG+GGG | 0.711232 | tig0026054:-68228 | None:intergenic |
| CTAACAACAAGACAGTTGAG+AGG | 0.723501 | tig0026054:-66003 | None:intergenic |
| GTGGGATGGATTAATAAACG+TGG | 0.733010 | tig0026054:+67144 | Msa1426660:CDS |
| GTCCACATACCAGCTCACAG+AGG | 0.789985 | tig0026054:+68326 | Msa1426660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAATCTTTAATTTC+TGG | - | tig0026054:66985-67004 | None:intergenic | 10.0% |
| !!! | TCAATTTTAAATCAAAATAA+TGG | - | tig0026054:68028-68047 | None:intergenic | 10.0% |
| !!! | TCTTTTATAACTTTGTTATT+AGG | + | tig0026054:66638-66657 | Msa1426660:intron | 15.0% |
| !!! | ATTATATTTGATTTTTCTTC+AGG | + | tig0026054:67403-67422 | Msa1426660:CDS | 15.0% |
| !! | AATTAAAGTTAGCAATAATT+TGG | - | tig0026054:67492-67511 | None:intergenic | 15.0% |
| !! | ATTCTTTGTTAATGTTAAAA+GGG | - | tig0026054:67636-67655 | None:intergenic | 15.0% |
| !! | TATTCTTTGTTAATGTTAAA+AGG | - | tig0026054:67637-67656 | None:intergenic | 15.0% |
| !! | AAAGAATAATATCATTTCAA+TGG | + | tig0026054:67649-67668 | Msa1426660:intron | 15.0% |
| !! | ATCAAACATAATAAGTGAAA+TGG | - | tig0026054:66402-66421 | None:intergenic | 20.0% |
| !! | ATCAATGATAGATATTACTT+TGG | - | tig0026054:66513-66532 | None:intergenic | 20.0% |
| !! | TTCTTTGTTAATGTTAAAAG+GGG | - | tig0026054:67635-67654 | None:intergenic | 20.0% |
| !! | ATCACAAAAATTAAGAAAGT+TGG | + | tig0026054:67723-67742 | Msa1426660:intron | 20.0% |
| !! | TGCAAACATAAACTAATTAT+CGG | - | tig0026054:67795-67814 | None:intergenic | 20.0% |
| !! | TCGCAAAAGTTATTTAAATT+TGG | + | tig0026054:68504-68523 | Msa1426660:intron | 20.0% |
| !!! | TGTTTGATTGTTGTTTAGAA+TGG | + | tig0026054:66414-66433 | Msa1426660:intron | 25.0% |
| ! | ATAGATATTACTTTGGACTT+TGG | - | tig0026054:66506-66525 | None:intergenic | 25.0% |
| ! | TGATGTGATGAATAAATGAA+TGG | + | tig0026054:66529-66548 | Msa1426660:intron | 25.0% |
| ! | TTTCAACGAACTTATGAATT+AGG | - | tig0026054:66573-66592 | None:intergenic | 25.0% |
| !! | TTCGTTGAAATAACAACTTT+TGG | + | tig0026054:66583-66602 | Msa1426660:intron | 25.0% |
| !! | GCTTTAAGTTATAAAACTCA+TGG | - | tig0026054:66673-66692 | None:intergenic | 25.0% |
| !!! | TATTTTGATCTGATTGGAAT+TGG | - | tig0026054:66850-66869 | None:intergenic | 25.0% |
| !!! | CAACATTATTTTGATCTGAT+TGG | - | tig0026054:66856-66875 | None:intergenic | 25.0% |
| ! | CAATCAGATCAAAATAATGT+TGG | + | tig0026054:66854-66873 | Msa1426660:intron | 25.0% |
| !!! | ATTTTCTAGAGATGGAAAAA+TGG | + | tig0026054:67104-67123 | Msa1426660:CDS | 25.0% |
| ! | AAATCAAGCAGTATTATCTA+AGG | + | tig0026054:67175-67194 | Msa1426660:intron | 25.0% |
| ! | GTACTAAAAGCCAATAAAAT+TGG | - | tig0026054:67334-67353 | None:intergenic | 25.0% |
| ! | CAAACATAAACTAATTATCG+GGG | - | tig0026054:67793-67812 | None:intergenic | 25.0% |
| ! | GCAAACATAAACTAATTATC+GGG | - | tig0026054:67794-67813 | None:intergenic | 25.0% |
| !! | TTGAAAGGAGTCTTATATAA+AGG | + | tig0026054:67892-67911 | Msa1426660:intron | 25.0% |
| ! | GATTAATTTCAACTGAATCT+TGG | + | tig0026054:67936-67955 | Msa1426660:intron | 25.0% |
| ! | ATTCAAATGAGAAAGAATCA+TGG | + | tig0026054:68130-68149 | Msa1426660:CDS | 25.0% |
| ! | AGAAAGAATCATGGAATAAT+TGG | + | tig0026054:68139-68158 | Msa1426660:CDS | 25.0% |
| ! | CATGGAATAATTGGTATTAT+AGG | + | tig0026054:68148-68167 | Msa1426660:CDS | 25.0% |
| ! | GAATAATTGGTATTATAGGT+GGG | + | tig0026054:68152-68171 | Msa1426660:intron | 25.0% |
| ! | AATAATTGGTATTATAGGTG+GGG | + | tig0026054:68153-68172 | Msa1426660:intron | 25.0% |
| ! | CATTCAATCATTCAATTTGT+TGG | + | tig0026054:68246-68265 | Msa1426660:CDS | 25.0% |
| ! | TATATTATAACATGAGTCAG+TGG | - | tig0026054:68394-68413 | None:intergenic | 25.0% |
| !! | ATTTCAAGTTTGGAATTTGG+TGG | - | tig0026054:65969-65988 | None:intergenic | 30.0% |
| !! | TGCATTTCAAGTTTGGAATT+TGG | - | tig0026054:65972-65991 | None:intergenic | 30.0% |
| ACAAAACTCAAGAATAAGAG+AGG | - | tig0026054:66047-66066 | None:intergenic | 30.0% | |
| ATGCATATCCTAACAAAAGA+TGG | - | tig0026054:66149-66168 | None:intergenic | 30.0% | |
| AACTTCAATACCATTGCATT+AGG | + | tig0026054:66185-66204 | Msa1426660:CDS | 30.0% | |
| AATTCATATGTATGCCAAAC+GGG | - | tig0026054:66308-66327 | None:intergenic | 30.0% | |
| CAATTCATATGTATGCCAAA+CGG | - | tig0026054:66309-66328 | None:intergenic | 30.0% | |
| TTTGGCATACATATGAATTG+AGG | + | tig0026054:66309-66328 | Msa1426660:CDS | 30.0% | |
| TTGGCATACATATGAATTGA+GGG | + | tig0026054:66310-66329 | Msa1426660:CDS | 30.0% | |
| GAATTCTAATTCCTCATTGT+TGG | + | tig0026054:66351-66370 | Msa1426660:intron | 30.0% | |
| !!! | TTAGAATGGACTCGTTTTTT+TGG | + | tig0026054:66428-66447 | Msa1426660:intron | 30.0% |
| TGAATGGAAAAAATGTGGTT+GGG | - | tig0026054:66789-66808 | None:intergenic | 30.0% | |
| !!! | TTCTGGCTAGATTTTAGAAT+TGG | - | tig0026054:66968-66987 | None:intergenic | 30.0% |
| TGCAGATAATATGATTGTTG+TGG | - | tig0026054:67055-67074 | None:intergenic | 30.0% | |
| AAATGGGGCTGAAATTTATT+TGG | + | tig0026054:67270-67289 | Msa1426660:CDS | 30.0% | |
| CTTCAAACAACAATTCCATT+TGG | + | tig0026054:67301-67320 | Msa1426660:CDS | 30.0% | |
| ! | AAAATTGGTTGCTTTCCAAA+TGG | - | tig0026054:67319-67338 | None:intergenic | 30.0% |
| ! | TGGAAAGCAACCAATTTTAT+TGG | + | tig0026054:67321-67340 | Msa1426660:CDS | 30.0% |
| ACGATCATACTAGTAAATTG+TGG | - | tig0026054:67676-67695 | None:intergenic | 30.0% | |
| ! | TCAACGAGATCTTATGTTTT+GGG | - | tig0026054:67699-67718 | None:intergenic | 30.0% |
| TAATGCAGCTGAAATTTGAA+AGG | + | tig0026054:67877-67896 | Msa1426660:intron | 30.0% | |
| ! | TTGAAAATTATCCCTTTTGC+AGG | + | tig0026054:68079-68098 | Msa1426660:intron | 30.0% |
| TCTCATTTGAATCAAACCAT+TGG | - | tig0026054:68122-68141 | None:intergenic | 30.0% | |
| GGAATAATTGGTATTATAGG+TGG | + | tig0026054:68151-68170 | Msa1426660:intron | 30.0% | |
| TGAATGTAGATAGAACCAAA+GGG | - | tig0026054:68232-68251 | None:intergenic | 30.0% | |
| TTGAATGTAGATAGAACCAA+AGG | - | tig0026054:68233-68252 | None:intergenic | 30.0% | |
| !! | CAATTTGTTGGATTTGCATT+TGG | + | tig0026054:68258-68277 | Msa1426660:CDS | 30.0% |
| AACCATGTATGTTCAGATAT+TGG | + | tig0026054:68574-68593 | Msa1426660:intron | 30.0% | |
| ATTCTTCTTGAGACCAAATA+GGG | + | tig0026054:68598-68617 | Msa1426660:CDS | 30.0% | |
| !! | AGTCTCTTGCATTTCAAGTT+TGG | - | tig0026054:65979-65998 | None:intergenic | 35.0% |
| ACTACCATTGTTCCTATCTT+TGG | + | tig0026054:66068-66087 | Msa1426660:five_prime_UTR | 35.0% | |
| TGATCCAAAGATAGGAACAA+TGG | - | tig0026054:66075-66094 | None:intergenic | 35.0% | |
| AATGGCAAAGCTAAGATCTT+TGG | + | tig0026054:66112-66131 | Msa1426660:exon | 35.0% | |
| ! | TAAGATCTTTGGTTCAGCTA+TGG | + | tig0026054:66123-66142 | Msa1426660:CDS | 35.0% |
| ATATGTTCTGATAAGGTGGA+GGG | - | tig0026054:66268-66287 | None:intergenic | 35.0% | |
| GATGATATGTTCTGATAAGG+TGG | - | tig0026054:66272-66291 | None:intergenic | 35.0% | |
| GGAGATGATATGTTCTGATA+AGG | - | tig0026054:66275-66294 | None:intergenic | 35.0% | |
| TAGAAGTAGAACCAACAATG+AGG | - | tig0026054:66365-66384 | None:intergenic | 35.0% | |
| GTGAATGGAAAAAATGTGGT+TGG | - | tig0026054:66790-66809 | None:intergenic | 35.0% | |
| CCTTGTGAATGGAAAAAATG+TGG | - | tig0026054:66794-66813 | None:intergenic | 35.0% | |
| !!! | CCACATTTTTTCCATTCACA+AGG | + | tig0026054:66791-66810 | Msa1426660:intron | 35.0% |
| TCTAGAGATGGAAAAATGGT+CGG | + | tig0026054:67108-67127 | Msa1426660:CDS | 35.0% | |
| TCAGAAGTCATTGCAAACAA+AGG | + | tig0026054:67208-67227 | Msa1426660:CDS | 35.0% | |
| ! | TTTTCTTCAGGTGCAAAATC+AGG | + | tig0026054:67415-67434 | Msa1426660:CDS | 35.0% |
| !!! | GTTTTTTTTTTCCTTCGCCT+CGG | + | tig0026054:67571-67590 | Msa1426660:intron | 35.0% |
| ! | GTTAATGTTAAAAGGGGTGT+TGG | - | tig0026054:67629-67648 | None:intergenic | 35.0% |
| ! | GTCAACGAGATCTTATGTTT+TGG | - | tig0026054:67700-67719 | None:intergenic | 35.0% |
| !! | AGCAGAGAGCTTTTTATTTG+AGG | + | tig0026054:67984-68003 | Msa1426660:intron | 35.0% |
| !! | GCAGAGAGCTTTTTATTTGA+GGG | + | tig0026054:67985-68004 | Msa1426660:intron | 35.0% |
| GAATGTAGATAGAACCAAAG+GGG | - | tig0026054:68231-68250 | None:intergenic | 35.0% | |
| AGTAGAGTTGTAATCCAAGA+AGG | - | tig0026054:68296-68315 | None:intergenic | 35.0% | |
| TGCCAATATCTGAACATACA+TGG | - | tig0026054:68579-68598 | None:intergenic | 35.0% | |
| CATTCTTCTTGAGACCAAAT+AGG | + | tig0026054:68597-68616 | Msa1426660:CDS | 35.0% | |
| ATTCCAAGTTTCGCAAAATG+TGG | + | tig0026054:68621-68640 | Msa1426660:CDS | 35.0% | |
| ! | ATTCCACATTTTGCGAAACT+TGG | - | tig0026054:68627-68646 | None:intergenic | 35.0% |
| CTAACAACAAGACAGTTGAG+AGG | - | tig0026054:66006-66025 | None:intergenic | 40.0% | |
| !! | CTCTCAACTGTCTTGTTGTT+AGG | + | tig0026054:66004-66023 | Msa1426660:five_prime_UTR | 40.0% |
| GATCAGTGTGATCCAAAGAT+AGG | - | tig0026054:66083-66102 | None:intergenic | 40.0% | |
| ATCTTTGGATCACACTGATC+TGG | + | tig0026054:66083-66102 | Msa1426660:five_prime_UTR | 40.0% | |
| ACACTGATCTGGTCTATGAA+TGG | + | tig0026054:66094-66113 | Msa1426660:exon | 40.0% | |
| ! | AGCTATGGCCATCTTTTGTT+AGG | + | tig0026054:66138-66157 | Msa1426660:CDS | 40.0% |
| TGTGTCATCTCCTAATGCAA+TGG | - | tig0026054:66198-66217 | None:intergenic | 40.0% | |
| GATATGTTCTGATAAGGTGG+AGG | - | tig0026054:66269-66288 | None:intergenic | 40.0% | |
| TGGAAAAAATGTGGTTGGGA+TGG | - | tig0026054:66785-66804 | None:intergenic | 40.0% | |
| GATCTGATTGGAATTGGACT+CGG | - | tig0026054:66844-66863 | None:intergenic | 40.0% | |
| !! | GGGATTGGATTTTCTAGAGA+TGG | + | tig0026054:67096-67115 | Msa1426660:CDS | 40.0% |
| !! | GTGGGATGGATTAATAAACG+TGG | + | tig0026054:67144-67163 | Msa1426660:CDS | 40.0% |
| TTTGACAGATGGTGTTCATG+TGG | - | tig0026054:67364-67383 | None:intergenic | 40.0% | |
| TGTCATCATGCTTTGACAGA+TGG | - | tig0026054:67375-67394 | None:intergenic | 40.0% | |
| TTGGATAGCTCAAGAGTTAG+AGG | - | tig0026054:67610-67629 | None:intergenic | 40.0% | |
| ! | TATCCCTTTTGCAGGTTCTA+TGG | + | tig0026054:68087-68106 | Msa1426660:intron | 40.0% |
| GATCCATAGAACCTGCAAAA+GGG | - | tig0026054:68093-68112 | None:intergenic | 40.0% | |
| TGAATCAAACCATTGGATGC+TGG | - | tig0026054:68115-68134 | None:intergenic | 40.0% | |
| ! | TGCGAGGTACTTCAAACATA+AGG | + | tig0026054:68203-68222 | Msa1426660:intron | 40.0% |
| TCAAACATAAGGAACCCCTT+TGG | + | tig0026054:68214-68233 | Msa1426660:intron | 40.0% | |
| CCTGAAGAATACTTAGCACA+AGG | - | tig0026054:68367-68386 | None:intergenic | 40.0% | |
| CCTTGTGCTAAGTATTCTTC+AGG | + | tig0026054:68364-68383 | Msa1426660:CDS | 40.0% | |
| CGAAACTTGGAATCCCTATT+TGG | - | tig0026054:68614-68633 | None:intergenic | 40.0% | |
| AGGAGATGACACAACATCGT+CGG | + | tig0026054:66205-66224 | Msa1426660:CDS | 45.0% | |
| CTCCAATATGCAAACCCGTT+TGG | + | tig0026054:66291-66310 | Msa1426660:CDS | 45.0% | |
| ! | TGCCAAACGGGTTTGCATAT+TGG | - | tig0026054:66296-66315 | None:intergenic | 45.0% |
| ACCAGATTCTCTACGGAAGT+CGG | - | tig0026054:66740-66759 | None:intergenic | 45.0% | |
| ACTTCCGTAGAGAATCTGGT+TGG | + | tig0026054:66740-66759 | Msa1426660:intron | 45.0% | |
| ATGGATGATCTCGCTAAAGG+TGG | - | tig0026054:66766-66785 | None:intergenic | 45.0% | |
| TCGGGTTCAAACCTTGTGAA+TGG | - | tig0026054:66805-66824 | None:intergenic | 45.0% | |
| TGAACCCGAAGCCTTTCTTA+AGG | + | tig0026054:66816-66835 | Msa1426660:intron | 45.0% | |
| GGATCCTTAAGAAAGGCTTC+GGG | - | tig0026054:66823-66842 | None:intergenic | 45.0% | |
| CGGATCCTTAAGAAAGGCTT+CGG | - | tig0026054:66824-66843 | None:intergenic | 45.0% | |
| TGGACTCGGATCCTTAAGAA+AGG | - | tig0026054:66830-66849 | None:intergenic | 45.0% | |
| TTATCTGCACCCTACACAGT+TGG | + | tig0026054:67066-67085 | Msa1426660:CDS | 45.0% | |
| TATCTGCACCCTACACAGTT+GGG | + | tig0026054:67067-67086 | Msa1426660:CDS | 45.0% | |
| ! | AATGGTCGGTTCAAGTGCAA+TGG | + | tig0026054:67122-67141 | Msa1426660:CDS | 45.0% |
| ATGGTGTTCATGTGGATGCT+TGG | - | tig0026054:67356-67375 | None:intergenic | 45.0% | |
| GGATCCATAGAACCTGCAAA+AGG | - | tig0026054:68094-68113 | None:intergenic | 45.0% | |
| TCTATGGATCCAGCATCCAA+TGG | + | tig0026054:68103-68122 | Msa1426660:CDS | 45.0% | |
| TGGGGATTAATCCTACCAGT+AGG | + | tig0026054:68171-68190 | Msa1426660:intron | 45.0% | |
| CAACAATTGCACCTACTGGT+AGG | - | tig0026054:68185-68204 | None:intergenic | 45.0% | |
| CTGGTATGTGGACATGCATT+GGG | - | tig0026054:68319-68338 | None:intergenic | 45.0% | |
| ATACCAGCTCACAGAGGAAT+TGG | + | tig0026054:68332-68351 | Msa1426660:CDS | 45.0% | |
| ! | CATCGTCGGAAAGTACATGC+AGG | + | tig0026054:66219-66238 | Msa1426660:CDS | 50.0% |
| TGTTCTGATAAGGTGGAGGG+AGG | - | tig0026054:66265-66284 | None:intergenic | 50.0% | |
| CCAGATTCTCTACGGAAGTC+GGG | - | tig0026054:66739-66758 | None:intergenic | 50.0% | |
| GTGGCCAACCAGATTCTCTA+CGG | - | tig0026054:66747-66766 | None:intergenic | 50.0% | |
| GGGATGGATGATCTCGCTAA+AGG | - | tig0026054:66769-66788 | None:intergenic | 50.0% | |
| ! | GTCGGTTCAAGTGCAATGGT+GGG | + | tig0026054:67126-67145 | Msa1426660:CDS | 50.0% |
| ! | GTTCAAGTGCAATGGTGGGA+TGG | + | tig0026054:67130-67149 | Msa1426660:CDS | 50.0% |
| GCAGCAGGCACGTTATTTAG+AGG | - | tig0026054:67241-67260 | None:intergenic | 50.0% | |
| AAATAACGTGCCTGCTGCTG+TGG | + | tig0026054:67243-67262 | Msa1426660:CDS | 50.0% | |
| CTGCTGCTGTGGCAACAAAT+GGG | + | tig0026054:67254-67273 | Msa1426660:CDS | 50.0% | |
| TGCTGCTGTGGCAACAAATG+GGG | + | tig0026054:67255-67274 | Msa1426660:CDS | 50.0% | |
| ATGAGTTCAAACCGAGGCGA+AGG | - | tig0026054:67585-67604 | None:intergenic | 50.0% | |
| GAGGTCATGAGTTCAAACCG+AGG | - | tig0026054:67591-67610 | None:intergenic | 50.0% | |
| CTCGCAACAATTGCACCTAC+TGG | - | tig0026054:68189-68208 | None:intergenic | 50.0% | |
| CAGTAGGTGCAATTGTTGCG+AGG | + | tig0026054:68187-68206 | Msa1426660:intron | 50.0% | |
| !! | GGACTTGCTACTGTCCTTCT+TGG | + | tig0026054:68279-68298 | Msa1426660:CDS | 50.0% |
| GCTGGTATGTGGACATGCAT+TGG | - | tig0026054:68320-68339 | None:intergenic | 50.0% | |
| TTCCTCTGTGAGCTGGTATG+TGG | - | tig0026054:68331-68350 | None:intergenic | 50.0% | |
| ATGCCAATTCCTCTGTGAGC+TGG | - | tig0026054:68338-68357 | None:intergenic | 50.0% | |
| CCCGACTTCCGTAGAGAATC+TGG | + | tig0026054:66736-66755 | Msa1426660:intron | 55.0% | |
| TGCACCCTACACAGTTGGGT+GGG | + | tig0026054:67071-67090 | Msa1426660:CDS | 55.0% | |
| ! | GGTCGGTTCAAGTGCAATGG+TGG | + | tig0026054:67125-67144 | Msa1426660:CDS | 55.0% |
| ! | CCATTTGTTGCCACAGCAGC+AGG | - | tig0026054:67256-67275 | None:intergenic | 55.0% |
| CCTGCTGCTGTGGCAACAAA+TGG | + | tig0026054:67253-67272 | Msa1426660:CDS | 55.0% | |
| GTCCACATACCAGCTCACAG+AGG | + | tig0026054:68326-68345 | Msa1426660:CDS | 55.0% | |
| CTGCACCCTACACAGTTGGG+TGG | + | tig0026054:67070-67089 | Msa1426660:CDS | 60.0% | |
| ACCCTACACAGTTGGGTGGG+TGG | + | tig0026054:67074-67093 | Msa1426660:CDS | 60.0% | |
| CCCACCCACCCAACTGTGTA+GGG | - | tig0026054:67078-67097 | None:intergenic | 60.0% | |
| CCCTACACAGTTGGGTGGGT+GGG | + | tig0026054:67075-67094 | Msa1426660:CDS | 60.0% | |
| CCTACACAGTTGGGTGGGTG+GGG | + | tig0026054:67076-67095 | Msa1426660:CDS | 60.0% | |
| ACAGTTGGGTGGGTGGGGAT+TGG | + | tig0026054:67081-67100 | Msa1426660:CDS | 60.0% | |
| CCCCACCCACCCAACTGTGT+AGG | - | tig0026054:67079-67098 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026054 | gene | 65963 | 68658 | 65963 | ID=Msa1426660;Name=Msa1426660 |
| tig0026054 | mRNA | 65963 | 68658 | 65963 | ID=Msa1426660-mRNA-1;Parent=Msa1426660;Name=Msa1426660-mRNA-1;_AED=0.07;_eAED=0.16;_QI=150|0.2|0.16|1|0.6|0.16|6|0|297 |
| tig0026054 | exon | 65963 | 66331 | 65963 | ID=Msa1426660-mRNA-1:exon:5024;Parent=Msa1426660-mRNA-1 |
| tig0026054 | exon | 67033 | 67165 | 67033 | ID=Msa1426660-mRNA-1:exon:5025;Parent=Msa1426660-mRNA-1 |
| tig0026054 | exon | 67197 | 67436 | 67197 | ID=Msa1426660-mRNA-1:exon:5026;Parent=Msa1426660-mRNA-1 |
| tig0026054 | exon | 68101 | 68169 | 68101 | ID=Msa1426660-mRNA-1:exon:5027;Parent=Msa1426660-mRNA-1 |
| tig0026054 | exon | 68225 | 68385 | 68225 | ID=Msa1426660-mRNA-1:exon:5028;Parent=Msa1426660-mRNA-1 |
| tig0026054 | exon | 68590 | 68658 | 68590 | ID=Msa1426660-mRNA-1:exon:5029;Parent=Msa1426660-mRNA-1 |
| tig0026054 | five_prime_UTR | 65963 | 66112 | 65963 | ID=Msa1426660-mRNA-1:five_prime_utr;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 66113 | 66331 | 66113 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 67033 | 67165 | 67033 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 67197 | 67436 | 67197 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 68101 | 68169 | 68101 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 68225 | 68385 | 68225 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| tig0026054 | CDS | 68590 | 68658 | 68590 | ID=Msa1426660-mRNA-1:cds;Parent=Msa1426660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
