Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446110 | sp|Q9M363|B561I_ARATH | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.25e-129 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446110 | A0A072U4F8 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040660 | Msa1446110 | 0.833306 | 5.752307e-56 | -8.615850e-47 |
| Msa0081250 | Msa1446110 | 0.844287 | 8.300132e-59 | -8.615850e-47 |
| Msa0102040 | Msa1446110 | 0.814070 | 1.857390e-51 | -8.615850e-47 |
| Msa1412710 | Msa1446110 | 0.843295 | 1.530270e-58 | -8.615850e-47 |
| Msa1416420 | Msa1446110 | 0.821946 | 3.080007e-53 | -8.615850e-47 |
| Msa1426070 | Msa1446110 | 0.850786 | 1.355168e-60 | -8.615850e-47 |
| Msa1426660 | Msa1446110 | 0.830452 | 2.914427e-55 | -8.615850e-47 |
| Msa1430750 | Msa1446110 | 0.842196 | 2.997073e-58 | -8.615850e-47 |
| Msa1433250 | Msa1446110 | 0.807895 | 4.041399e-50 | -8.615850e-47 |
| Msa1436420 | Msa1446110 | 0.843657 | 1.224480e-58 | -8.615850e-47 |
| Msa1445050 | Msa1446110 | 0.807552 | 4.781742e-50 | -8.615850e-47 |
| Msa0642950 | Msa1446110 | 0.872982 | 2.092690e-67 | -8.615850e-47 |
| Msa0688820 | Msa1446110 | 0.852795 | 3.652264e-61 | -8.615850e-47 |
| Msa0818710 | Msa1446110 | 0.814979 | 1.169290e-51 | -8.615850e-47 |
| Msa0173780 | Msa1446110 | 0.838030 | 3.663086e-57 | -8.615850e-47 |
| Msa0184680 | Msa1446110 | 0.832682 | 8.223684e-56 | -8.615850e-47 |
| Msa0193850 | Msa1446110 | 0.853337 | 2.553752e-61 | -8.615850e-47 |
| Msa0199960 | Msa1446110 | 0.840283 | 9.545797e-58 | -8.615850e-47 |
| Msa0235710 | Msa1446110 | 0.855888 | 4.662709e-62 | -8.615850e-47 |
| Msa1264570 | Msa1446110 | 0.863646 | 2.145291e-64 | -8.615850e-47 |
| Msa1327650 | Msa1446110 | 0.827006 | 1.984849e-54 | -8.615850e-47 |
| Msa1336610 | Msa1446110 | 0.813773 | 2.160238e-51 | -8.615850e-47 |
| Msa1340700 | Msa1446110 | 0.838871 | 2.222637e-57 | -8.615850e-47 |
| Msa0379400 | Msa1446110 | 0.823105 | 1.656813e-53 | -8.615850e-47 |
| Msa0379440 | Msa1446110 | 0.832591 | 8.660931e-56 | -8.615850e-47 |
| Msa0389500 | Msa1446110 | 0.812600 | 3.908368e-51 | -8.615850e-47 |
| Msa0438010 | Msa1446110 | 0.816714 | 4.795404e-52 | -8.615850e-47 |
| Msa0475290 | Msa1446110 | 0.855351 | 6.686236e-62 | -8.615850e-47 |
| Msa1037550 | Msa1446110 | 0.944956 | 7.500899e-104 | -8.615850e-47 |
| Msa1078930 | Msa1446110 | 0.847789 | 9.258672e-60 | -8.615850e-47 |
| Msa0242490 | Msa1446110 | 0.813617 | 2.337760e-51 | -8.615850e-47 |
| Msa0243600 | Msa1446110 | 0.805598 | 1.235533e-49 | -8.615850e-47 |
| Msa0274440 | Msa1446110 | 0.884805 | 1.401450e-71 | -8.615850e-47 |
| Msa0280690 | Msa1446110 | 0.829804 | 4.192750e-55 | -8.615850e-47 |
| Msa0282220 | Msa1446110 | 0.829677 | 4.503273e-55 | -8.615850e-47 |
| Msa0314170 | Msa1446110 | 0.872271 | 3.614710e-67 | -8.615850e-47 |
| Msa1123930 | Msa1446110 | 0.863960 | 1.713550e-64 | -8.615850e-47 |
| Msa1130430 | Msa1446110 | 0.921100 | 5.511551e-88 | -8.615850e-47 |
| Msa1169230 | Msa1446110 | 0.835893 | 1.286954e-56 | -8.615850e-47 |
| Msa1222590 | Msa1446110 | 0.845555 | 3.775007e-59 | -8.615850e-47 |
| Msa0546800 | Msa1446110 | 0.812094 | 5.039373e-51 | -8.615850e-47 |
| Msa0547110 | Msa1446110 | 0.820529 | 6.535664e-53 | -8.615850e-47 |
| Msa0968350 | Msa1446110 | 0.856801 | 2.515901e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446110 | MtrunA17_Chr7g0275621 | 97.304 | 408 | 11 | 0 | 1 | 408 | 1 | 408 | 0.0 | 821 |
| Msa1446110 | MtrunA17_Chr8g0347591 | 35.608 | 337 | 205 | 6 | 44 | 374 | 44 | 374 | 1.62e-72 | 232 |
| Msa1446110 | MtrunA17_Chr8g0347581 | 35.366 | 246 | 146 | 7 | 37 | 275 | 29 | 268 | 4.43e-40 | 144 |
| Msa1446110 | MtrunA17_Chr7g0234191 | 29.684 | 411 | 235 | 20 | 6 | 385 | 38 | 425 | 1.96e-32 | 127 |
| Msa1446110 | MtrunA17_Chr4g0076051 | 28.571 | 308 | 187 | 10 | 101 | 385 | 87 | 384 | 1.26e-31 | 124 |
| Msa1446110 | MtrunA17_Chr2g0278181 | 28.720 | 289 | 186 | 8 | 104 | 378 | 1 | 283 | 2.57e-31 | 121 |
| Msa1446110 | MtrunA17_Chr5g0444651 | 27.616 | 344 | 215 | 10 | 63 | 379 | 51 | 387 | 4.60e-31 | 123 |
| Msa1446110 | MtrunA17_Chr2g0290131 | 29.470 | 302 | 183 | 10 | 104 | 384 | 94 | 386 | 6.16e-29 | 116 |
| Msa1446110 | MtrunA17_Chr5g0447771 | 35.593 | 177 | 106 | 4 | 218 | 386 | 247 | 423 | 6.50e-27 | 111 |
| Msa1446110 | MtrunA17_Chr3g0101961 | 26.316 | 285 | 197 | 6 | 104 | 378 | 87 | 368 | 4.60e-25 | 105 |
| Msa1446110 | MtrunA17_Chr8g0347601 | 32.948 | 173 | 109 | 5 | 39 | 205 | 23 | 194 | 1.33e-19 | 86.3 |
| Msa1446110 | MtrunA17_Chr2g0285681 | 24.427 | 262 | 166 | 8 | 74 | 315 | 518 | 767 | 4.04e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446110 | AT3G61750.1 | 52.770 | 343 | 155 | 5 | 37 | 375 | 32 | 371 | 6.35e-130 | 380 |
| Msa1446110 | AT3G61750.2 | 54.392 | 296 | 130 | 3 | 82 | 375 | 2 | 294 | 7.14e-115 | 338 |
| Msa1446110 | AT3G07570.1 | 35.519 | 366 | 218 | 9 | 26 | 380 | 11 | 369 | 9.11e-69 | 222 |
| Msa1446110 | AT5G47530.1 | 28.521 | 284 | 181 | 8 | 104 | 373 | 88 | 363 | 3.86e-31 | 123 |
| Msa1446110 | AT4G12980.1 | 35.556 | 180 | 109 | 3 | 216 | 388 | 212 | 391 | 7.66e-31 | 122 |
| Msa1446110 | AT3G25290.1 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
| Msa1446110 | AT3G25290.2 | 34.359 | 195 | 119 | 4 | 201 | 388 | 198 | 390 | 1.37e-30 | 121 |
| Msa1446110 | AT5G35735.1 | 25.581 | 344 | 223 | 11 | 74 | 398 | 57 | 386 | 1.75e-27 | 113 |
| Msa1446110 | AT3G59070.1 | 30.667 | 225 | 140 | 5 | 187 | 397 | 183 | 405 | 2.45e-25 | 107 |
| Msa1446110 | AT4G17280.1 | 26.625 | 323 | 208 | 9 | 72 | 375 | 58 | 370 | 3.03e-25 | 106 |
| Msa1446110 | AT2G04850.1 | 26.398 | 322 | 197 | 12 | 92 | 383 | 71 | 382 | 1.39e-20 | 93.2 |
| Msa1446110 | AT5G54830.1 | 23.423 | 333 | 205 | 12 | 79 | 379 | 535 | 849 | 1.12e-12 | 70.5 |
Find 134 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGCTGAAATTTATT+TGG | 0.168870 | tig0031267:-24469 | Msa1446110:CDS |
| AGAGGATCCATTTGGAAATT+TGG | 0.184762 | tig0031267:+22899 | None:intergenic |
| TGCATTTCAAGTTTGGAATT+TGG | 0.193087 | tig0031267:+25775 | None:intergenic |
| ACTACCATTGTTCCTATCTT+TGG | 0.226002 | tig0031267:-25676 | Msa1446110:five_prime_UTR |
| GTACTAAAAGCCAATAAAAT+TGG | 0.228379 | tig0031267:+24408 | None:intergenic |
| CGAAACTTGGAATCCCTATT+TGG | 0.245262 | tig0031267:+23127 | None:intergenic |
| AGAAAGAATCATGGAATAAT+TGG | 0.246187 | tig0031267:-23599 | Msa1446110:CDS |
| AGTTATCGTTCTCGAAATAT+TGG | 0.252993 | tig0031267:-22957 | Msa1446110:CDS |
| TGCAGCCTTGAACATAGTTT+TGG | 0.253562 | tig0031267:-23053 | Msa1446110:CDS |
| CATTCTTCTTGAGACCAAAT+AGG | 0.267115 | tig0031267:-23141 | Msa1446110:CDS |
| GGACTTGCTACTGTCCTTCT+TGG | 0.268455 | tig0031267:-23458 | Msa1446110:CDS |
| CATGGAATAATTGGTATTAT+AGG | 0.273911 | tig0031267:-23590 | Msa1446110:CDS |
| CATTCAATCATTCAATTTGT+TGG | 0.280269 | tig0031267:-23491 | Msa1446110:CDS |
| AGTCTCTTGCATTTCAAGTT+TGG | 0.289905 | tig0031267:+25768 | None:intergenic |
| TGCCAAACGGGTTTGCATAT+TGG | 0.291944 | tig0031267:+25451 | None:intergenic |
| GTCCTTCTTGGCAAACTTCT+AGG | 0.297800 | tig0031267:+22692 | None:intergenic |
| AATGGCAAAGCTAAGATCTT+TGG | 0.310082 | tig0031267:-25632 | Msa1446110:CDS |
| CCTGCTGCTGTGGCAACAAA+TGG | 0.314910 | tig0031267:-24486 | Msa1446110:CDS |
| CCTTGTGCTAAGTATTCTTC+AGG | 0.315018 | tig0031267:-23372 | Msa1446110:intron |
| CAATTTGTTGGATTTGCATT+TGG | 0.319893 | tig0031267:-23479 | Msa1446110:CDS |
| AAAGTTAGGATTGTCCTTCT+TGG | 0.329171 | tig0031267:+22680 | None:intergenic |
| CCCTACACAGTTGGGTGGGT+GGG | 0.331717 | tig0031267:-24666 | Msa1446110:CDS |
| CTTCAAACAACAATTCCATT+TGG | 0.339138 | tig0031267:-24438 | Msa1446110:CDS |
| CTGCTGCTGTGGCAACAAAT+GGG | 0.354136 | tig0031267:-24485 | Msa1446110:CDS |
| CCACAGTTGGTTTGGAAGAA+TGG | 0.354486 | tig0031267:-23086 | Msa1446110:CDS |
| ATGGAATAATTGGTATTATA+GGG | 0.356476 | tig0031267:-23589 | Msa1446110:CDS |
| ACAGTTGGGTGGGTGGGGAT+TGG | 0.365724 | tig0031267:-24660 | Msa1446110:CDS |
| AAATGTGTATGCCTCTTAAC+TGG | 0.366457 | tig0031267:+22363 | None:intergenic |
| AAGATTTAAATCCAGTTAAG+AGG | 0.367391 | tig0031267:-22374 | Msa1446110:three_prime_UTR |
| AACTTCAATACCATTGCATT+AGG | 0.373456 | tig0031267:-25559 | Msa1446110:CDS |
| CTGGTATGTGGACATGCATT+TGG | 0.374194 | tig0031267:+23420 | None:intergenic |
| CTCTCAACTGTCTTGTTGTT+AGG | 0.381805 | tig0031267:-25740 | Msa1446110:five_prime_UTR |
| ATTCTTCTTGAGACCAAATA+GGG | 0.382671 | tig0031267:-23140 | Msa1446110:CDS |
| GCAGCAGGCACGTTATTTAG+AGG | 0.384723 | tig0031267:+24501 | None:intergenic |
| CTTCTCCAAGAGGATCCATT+TGG | 0.387230 | tig0031267:+22891 | None:intergenic |
| TTGAAATTTAAGAATCAGAT+TGG | 0.395957 | tig0031267:-22512 | Msa1446110:three_prime_UTR |
| AGTTTCTGCTGCTGCTTGAT+CGG | 0.396757 | tig0031267:-22603 | Msa1446110:three_prime_UTR |
| CATTCCCAAAACTATGTTCA+AGG | 0.410754 | tig0031267:+23048 | None:intergenic |
| CATGCGAGGAAGCCAAAGTT+AGG | 0.413562 | tig0031267:+22666 | None:intergenic |
| ATACCAGCTCACAGAGGAAT+TGG | 0.414517 | tig0031267:-23404 | Msa1446110:CDS |
| AAAATTGGTTGCTTTCCAAA+TGG | 0.417606 | tig0031267:+24423 | None:intergenic |
| CCTACACAGTTGGGTGGGTG+GGG | 0.424223 | tig0031267:-24665 | Msa1446110:CDS |
| AATTCATATGTATGCCAAAC+GGG | 0.434998 | tig0031267:+25439 | None:intergenic |
| GTTTCTGCTGCTGCTTGATC+GGG | 0.435140 | tig0031267:-22602 | Msa1446110:three_prime_UTR |
| ACAAGCTATGGATTCCTTGT+TGG | 0.442212 | tig0031267:-22995 | Msa1446110:CDS |
| CTCCAATATGCAAACCCGTT+TGG | 0.444241 | tig0031267:-25453 | Msa1446110:CDS |
| CCATTTGTTGCCACAGCAGC+AGG | 0.445115 | tig0031267:+24486 | None:intergenic |
| AATTTGTACCACAGTTGGTT+TGG | 0.448506 | tig0031267:-23094 | Msa1446110:CDS |
| CCAAGAAATATTCAAACAAA+AGG | 0.450332 | tig0031267:-22860 | Msa1446110:intron |
| ATCAAGCAGTATTATCTAAG+AGG | 0.452095 | tig0031267:-24564 | Msa1446110:CDS |
| CCTTCCACCAAATTTCCAAA+TGG | 0.454867 | tig0031267:-22906 | Msa1446110:CDS |
| TGCGAGGTACTTCAAACATA+AGG | 0.459343 | tig0031267:-23534 | Msa1446110:CDS |
| AAATATTGGCATATTTAAAA+CGG | 0.460423 | tig0031267:-22943 | Msa1446110:CDS |
| ATCTTTGGATCACACTGATC+TGG | 0.464570 | tig0031267:-25661 | Msa1446110:five_prime_UTR |
| TGGTATGTGGACATGCATTT+GGG | 0.466439 | tig0031267:+23421 | None:intergenic |
| CAGCAGGAGCAACGAATGCT+TGG | 0.473840 | tig0031267:-23021 | Msa1446110:CDS |
| AAGAAGGACAATCCTAACTT+TGG | 0.474137 | tig0031267:-22678 | Msa1446110:three_prime_UTR |
| TCTCATTTGAATCAAACCAT+TGG | 0.474801 | tig0031267:+23619 | None:intergenic |
| TACCTAGAAGTTTGCCAAGA+AGG | 0.479211 | tig0031267:-22694 | Msa1446110:three_prime_UTR |
| GATCAGTGTGATCCAAAGAT+AGG | 0.481592 | tig0031267:+25664 | None:intergenic |
| CCATTTGGAAATTTGGTGGA+AGG | 0.482086 | tig0031267:+22906 | None:intergenic |
| TGAATCAAACCATTGGATGC+TGG | 0.484210 | tig0031267:+23626 | None:intergenic |
| ATTCAAATGAGAAAGAATCA+TGG | 0.487178 | tig0031267:-23608 | Msa1446110:CDS |
| AATTTCCAAATGGATCCTCT+TGG | 0.487835 | tig0031267:-22896 | Msa1446110:CDS |
| GGAGATGATATATTCTGATA+AGG | 0.491112 | tig0031267:+25472 | None:intergenic |
| TCAAACATAAGGAACCCCTT+TGG | 0.493885 | tig0031267:-23523 | Msa1446110:CDS |
| TGTCATCATGCTTTGACAGA+TGG | 0.495892 | tig0031267:+24367 | None:intergenic |
| ACCCTACACAGTTGGGTGGG+TGG | 0.496193 | tig0031267:-24667 | Msa1446110:CDS |
| TATATCTACATCATTCGATA+AGG | 0.496508 | tig0031267:+22723 | None:intergenic |
| GCAAAATTTCTACAACATGT+AGG | 0.500492 | tig0031267:-22400 | Msa1446110:three_prime_UTR |
| TTGGCATACATATGAATTGA+GGG | 0.509114 | tig0031267:-25434 | Msa1446110:intron |
| CATTTGGAAATTTGGTGGAA+GGG | 0.509644 | tig0031267:+22907 | None:intergenic |
| GGATCCATTTGGAAATTTGG+TGG | 0.510637 | tig0031267:+22902 | None:intergenic |
| CCCACCCACCCAACTGTGTA+GGG | 0.511172 | tig0031267:+24666 | None:intergenic |
| ATGCATATCCTAACAAAAGA+TGG | 0.513584 | tig0031267:+25598 | None:intergenic |
| TGTGGAATTTGTACCACAGT+TGG | 0.515734 | tig0031267:-23099 | Msa1446110:CDS |
| TGCTGCTGTGGCAACAAATG+GGG | 0.517059 | tig0031267:-24484 | Msa1446110:CDS |
| CTCGCAACAATTGCACCTAC+TGG | 0.521608 | tig0031267:+23551 | None:intergenic |
| ATTTCAAGTTTGGAATTTGG+TGG | 0.522605 | tig0031267:+25778 | None:intergenic |
| TGATCAAAAGAGCATATTCA+CGG | 0.529334 | tig0031267:-22474 | Msa1446110:three_prime_UTR |
| GATATATTCTGATAAGGTGG+AGG | 0.531218 | tig0031267:+25478 | None:intergenic |
| GGTCGGTTCAAGTGCAATGG+TGG | 0.531243 | tig0031267:-24616 | Msa1446110:CDS |
| CAATTCATATGTATGCCAAA+CGG | 0.533146 | tig0031267:+25438 | None:intergenic |
| TATCTGCACCCTACACAGTT+GGG | 0.533408 | tig0031267:-24674 | Msa1446110:CDS |
| ATTCCAAGTTTCGCAAAATG+TGG | 0.534133 | tig0031267:-23117 | Msa1446110:CDS |
| ATAATTGGTATTATAGGGTG+GGG | 0.536263 | tig0031267:-23584 | Msa1446110:CDS |
| GATGATATATTCTGATAAGG+TGG | 0.538968 | tig0031267:+25475 | None:intergenic |
| TAAGATCTTTGGTTCAGCTA+TGG | 0.539939 | tig0031267:-25621 | Msa1446110:CDS |
| TTCCTCTGTGAGCTGGTATG+TGG | 0.543323 | tig0031267:+23408 | None:intergenic |
| ACACTGATCTGGTCTATGAA+TGG | 0.544015 | tig0031267:-25650 | Msa1446110:exon |
| CTGCACCCTACACAGTTGGG+TGG | 0.544650 | tig0031267:-24671 | Msa1446110:CDS |
| ATGCCAATTCCTCTGTGAGC+TGG | 0.546668 | tig0031267:+23401 | None:intergenic |
| AATAATTGGTATTATAGGGT+GGG | 0.550790 | tig0031267:-23585 | Msa1446110:CDS |
| AATGCTTGGAAGACAAGCTA+TGG | 0.552134 | tig0031267:-23007 | Msa1446110:CDS |
| TTATCTGCACCCTACACAGT+TGG | 0.554095 | tig0031267:-24675 | Msa1446110:CDS |
| GAATAATTGGTATTATAGGG+TGG | 0.554975 | tig0031267:-23586 | Msa1446110:CDS |
| TTTGGCATACATATGAATTG+AGG | 0.559705 | tig0031267:-25435 | Msa1446110:CDS |
| ATGGTGTTCATGTGGATGCT+TGG | 0.562567 | tig0031267:+24386 | None:intergenic |
| GATCAAAAGAGCATATTCAC+GGG | 0.566726 | tig0031267:-22473 | Msa1446110:three_prime_UTR |
| TTGAATGTAGATAGAACCAA+AGG | 0.567909 | tig0031267:+23507 | None:intergenic |
| AAATAACGTGCCTGCTGCTG+TGG | 0.575038 | tig0031267:-24496 | Msa1446110:CDS |
| GTTCAAGTGCAATGGTGGGA+TGG | 0.583060 | tig0031267:-24611 | Msa1446110:CDS |
| TGCACCCTACACAGTTGGGT+GGG | 0.592706 | tig0031267:-24670 | Msa1446110:CDS |
| TGAATGTAGATAGAACCAAA+GGG | 0.600269 | tig0031267:+23508 | None:intergenic |
| AGTAGAGTTGTAATCCAAGA+AGG | 0.601579 | tig0031267:+23444 | None:intergenic |
| GGAAAGATTTCTTCTCCAAG+AGG | 0.601984 | tig0031267:+22881 | None:intergenic |
| TCTATGGATCCAGCATCCAA+TGG | 0.602260 | tig0031267:-23635 | Msa1446110:CDS |
| CCCCACCCACCCAACTGTGT+AGG | 0.602301 | tig0031267:+24665 | None:intergenic |
| ATATATTCTGATAAGGTGGA+GGG | 0.605129 | tig0031267:+25479 | None:intergenic |
| CACGAGGAGTCTAACTGAAG+AGG | 0.608139 | tig0031267:-22422 | Msa1446110:three_prime_UTR |
| TTCAATCTCAAGTTCATGCG+AGG | 0.613465 | tig0031267:+22652 | None:intergenic |
| CCTGAAGAATACTTAGCACA+AGG | 0.616760 | tig0031267:+23372 | None:intergenic |
| ACAAAACTCAAGAATAAGAG+AGG | 0.617617 | tig0031267:+25700 | None:intergenic |
| TCAGAAGTCATTGCAAACAA+AGG | 0.618190 | tig0031267:-24531 | Msa1446110:CDS |
| CAACAATTGCACCTACTGGT+AGG | 0.621409 | tig0031267:+23555 | None:intergenic |
| AATGGTCGGTTCAAGTGCAA+TGG | 0.628638 | tig0031267:-24619 | Msa1446110:CDS |
| TGATCCAAAGATAGGAACAA+TGG | 0.629638 | tig0031267:+25672 | None:intergenic |
| TATTCTGATAAGGTGGAGGG+AGG | 0.635106 | tig0031267:+25482 | None:intergenic |
| AGGAGATGACACAACATCGT+CGG | 0.644400 | tig0031267:-25539 | Msa1446110:CDS |
| TGCAGATAATATGATTGTTG+TGG | 0.646735 | tig0031267:+24689 | None:intergenic |
| CATCGTCGGAAAGTACATGC+AGG | 0.648599 | tig0031267:-25525 | Msa1446110:CDS |
| CCATTCTTCCAAACCAACTG+TGG | 0.660006 | tig0031267:+23086 | None:intergenic |
| GTCGGTTCAAGTGCAATGGT+GGG | 0.660569 | tig0031267:-24615 | Msa1446110:CDS |
| TGGGGATTAATCCTACCAGT+AGG | 0.662402 | tig0031267:-23566 | Msa1446110:CDS |
| ATAATGCAGGGTGAATGTGT+TGG | 0.669771 | tig0031267:-22775 | Msa1446110:intron |
| TGTGTCATCTCCTAATGCAA+TGG | 0.677178 | tig0031267:+25549 | None:intergenic |
| CAGTAGGTGCAATTGTTGCG+AGG | 0.680721 | tig0031267:-23550 | Msa1446110:CDS |
| TTTGACAGATGGTGTTCATG+TGG | 0.686431 | tig0031267:+24378 | None:intergenic |
| GAATGTAGATAGAACCAAAG+GGG | 0.711232 | tig0031267:+23509 | None:intergenic |
| CTAACAACAAGACAGTTGAG+AGG | 0.723501 | tig0031267:+25741 | None:intergenic |
| GTGGGATGGATTAATAAACG+TGG | 0.733010 | tig0031267:-24597 | Msa1446110:CDS |
| TAACAATTATAATACCAACA+AGG | 0.736320 | tig0031267:+22981 | None:intergenic |
| ATGTTATTCTATGAAGCACG+AGG | 0.740815 | tig0031267:-22438 | Msa1446110:three_prime_UTR |
| GTCCACATACCAGCTCACAG+AGG | 0.789985 | tig0031267:-23410 | Msa1446110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAATCTTTAATTTC+TGG | + | tig0031267:23339-23358 | None:intergenic | 10.0% |
| !!! | TCAATTTTAAATCAAAATAA+TGG | + | tig0031267:24385-24404 | None:intergenic | 10.0% |
| !!! | TCTTTTATAACTTTGTTATT+AGG | - | tig0031267:22992-23011 | Msa1446110:CDS | 15.0% |
| !!! | ATTATATTTGATTTTTCTTC+AGG | - | tig0031267:23759-23778 | Msa1446110:intron | 15.0% |
| !! | AATTAAAGTTAGCAATAATT+TGG | + | tig0031267:23848-23867 | None:intergenic | 15.0% |
| !! | ATTCTTTGTTAATGTTAAAA+GGG | + | tig0031267:23993-24012 | None:intergenic | 15.0% |
| !! | TATTCTTTGTTAATGTTAAA+AGG | + | tig0031267:23994-24013 | None:intergenic | 15.0% |
| !! | AAAGAATAATATCATTTCAA+TGG | - | tig0031267:24006-24025 | Msa1446110:intron | 15.0% |
| !! | AAATATTGGCATATTTAAAA+CGG | - | tig0031267:25152-25171 | Msa1446110:intron | 15.0% |
| !! | ATCAAACATAATAAGTGAAA+TGG | + | tig0031267:22757-22776 | None:intergenic | 20.0% |
| !! | ATCAATGATAGATATTACTT+TGG | + | tig0031267:22867-22886 | None:intergenic | 20.0% |
| !! | TTCTTTGTTAATGTTAAAAG+GGG | + | tig0031267:23992-24011 | None:intergenic | 20.0% |
| !! | ATCACAAAAATTAAGAAAGT+TGG | - | tig0031267:24080-24099 | Msa1446110:intron | 20.0% |
| !! | TGCAAACATAAACTAATTAT+CGG | + | tig0031267:24152-24171 | None:intergenic | 20.0% |
| !! | ATGGAATAATTGGTATTATA+GGG | - | tig0031267:24506-24525 | Msa1446110:CDS | 20.0% |
| !! | TCGCAAAAGTTATTTAAATT+TGG | - | tig0031267:24861-24880 | Msa1446110:intron | 20.0% |
| !! | TAACAATTATAATACCAACA+AGG | + | tig0031267:25117-25136 | None:intergenic | 20.0% |
| !! | ACAAAACAACTTAAAAAACA+AGG | + | tig0031267:25271-25290 | None:intergenic | 20.0% |
| !!! | TTTTATACAAGTACAAAACT+AGG | + | tig0031267:25348-25367 | None:intergenic | 20.0% |
| !! | TTGAAATTTAAGAATCAGAT+TGG | - | tig0031267:25583-25602 | Msa1446110:CDS | 20.0% |
| !!! | TGTTTGATTGTTGTTTAGAA+TGG | - | tig0031267:22769-22788 | Msa1446110:exon | 25.0% |
| ! | ATAGATATTACTTTGGACTT+TGG | + | tig0031267:22860-22879 | None:intergenic | 25.0% |
| ! | TGATGTGATGAATAAATGAA+TGG | - | tig0031267:22883-22902 | Msa1446110:CDS | 25.0% |
| ! | TTTCAACGAACTTATGAATT+AGG | + | tig0031267:22927-22946 | None:intergenic | 25.0% |
| !! | TTCGTTGAAATAACAACTTT+TGG | - | tig0031267:22937-22956 | Msa1446110:CDS | 25.0% |
| !! | GCTTTAAGTTATAAAACTCA+TGG | + | tig0031267:23027-23046 | None:intergenic | 25.0% |
| !!! | TATTTTGATCTGATTGGAAT+TGG | + | tig0031267:23204-23223 | None:intergenic | 25.0% |
| !!! | CAACATTATTTTGATCTGAT+TGG | + | tig0031267:23210-23229 | None:intergenic | 25.0% |
| ! | CAATCAGATCAAAATAATGT+TGG | - | tig0031267:23208-23227 | Msa1446110:intron | 25.0% |
| !!! | ATTTTCTAGAGATGGAAAAA+TGG | - | tig0031267:23458-23477 | Msa1446110:CDS | 25.0% |
| ! | GTACTAAAAGCCAATAAAAT+TGG | + | tig0031267:23690-23709 | None:intergenic | 25.0% |
| ! | CAAACATAAACTAATTATCG+GGG | + | tig0031267:24150-24169 | None:intergenic | 25.0% |
| ! | GCAAACATAAACTAATTATC+GGG | + | tig0031267:24151-24170 | None:intergenic | 25.0% |
| !! | TTGAAAGGAGTCTTATATAA+AGG | - | tig0031267:24249-24268 | Msa1446110:intron | 25.0% |
| ! | GATTAATTTCAACTGAATCT+TGG | - | tig0031267:24293-24312 | Msa1446110:intron | 25.0% |
| ! | ATTCAAATGAGAAAGAATCA+TGG | - | tig0031267:24487-24506 | Msa1446110:CDS | 25.0% |
| ! | AGAAAGAATCATGGAATAAT+TGG | - | tig0031267:24496-24515 | Msa1446110:CDS | 25.0% |
| ! | CATGGAATAATTGGTATTAT+AGG | - | tig0031267:24505-24524 | Msa1446110:CDS | 25.0% |
| ! | AATAATTGGTATTATAGGGT+GGG | - | tig0031267:24510-24529 | Msa1446110:CDS | 25.0% |
| ! | CATTCAATCATTCAATTTGT+TGG | - | tig0031267:24604-24623 | Msa1446110:CDS | 25.0% |
| !!! | CCTTTTGTTTGAATATTTCT+TGG | + | tig0031267:25238-25257 | None:intergenic | 25.0% |
| ! | CCAAGAAATATTCAAACAAA+AGG | - | tig0031267:25235-25254 | Msa1446110:intron | 25.0% |
| !!! | TAATACAATCTTGATAATGC+AGG | - | tig0031267:25307-25326 | Msa1446110:intron | 25.0% |
| !!! | AATACAATCTTGATAATGCA+GGG | - | tig0031267:25308-25327 | Msa1446110:intron | 25.0% |
| ! | TATATCTACATCATTCGATA+AGG | + | tig0031267:25375-25394 | None:intergenic | 25.0% |
| ! | AAGATTTAAATCCAGTTAAG+AGG | - | tig0031267:25721-25740 | Msa1446110:five_prime_UTR | 25.0% |
| !! | ATTTCAAGTTTGGAATTTGG+TGG | + | tig0031267:22320-22339 | None:intergenic | 30.0% |
| !! | TGCATTTCAAGTTTGGAATT+TGG | + | tig0031267:22323-22342 | None:intergenic | 30.0% |
| ACAAAACTCAAGAATAAGAG+AGG | + | tig0031267:22398-22417 | None:intergenic | 30.0% | |
| ATGCATATCCTAACAAAAGA+TGG | + | tig0031267:22500-22519 | None:intergenic | 30.0% | |
| AACTTCAATACCATTGCATT+AGG | - | tig0031267:22536-22555 | Msa1446110:three_prime_UTR | 30.0% | |
| ATATATTCTGATAAGGTGGA+GGG | + | tig0031267:22619-22638 | None:intergenic | 30.0% | |
| GATGATATATTCTGATAAGG+TGG | + | tig0031267:22623-22642 | None:intergenic | 30.0% | |
| GGAGATGATATATTCTGATA+AGG | + | tig0031267:22626-22645 | None:intergenic | 30.0% | |
| AATTCATATGTATGCCAAAC+GGG | + | tig0031267:22659-22678 | None:intergenic | 30.0% | |
| CAATTCATATGTATGCCAAA+CGG | + | tig0031267:22660-22679 | None:intergenic | 30.0% | |
| TTTGGCATACATATGAATTG+AGG | - | tig0031267:22660-22679 | Msa1446110:three_prime_UTR | 30.0% | |
| TTGGCATACATATGAATTGA+GGG | - | tig0031267:22661-22680 | Msa1446110:three_prime_UTR | 30.0% | |
| GAATTCTAATTCCTCATTGT+TGG | - | tig0031267:22702-22721 | Msa1446110:three_prime_UTR | 30.0% | |
| TGAATGGAAAAAATGTGGTT+GGG | + | tig0031267:23143-23162 | None:intergenic | 30.0% | |
| !!! | TTCTGGCTAGATTTTAGAAT+TGG | + | tig0031267:23322-23341 | None:intergenic | 30.0% |
| TGCAGATAATATGATTGTTG+TGG | + | tig0031267:23409-23428 | None:intergenic | 30.0% | |
| ATCAAGCAGTATTATCTAAG+AGG | - | tig0031267:23531-23550 | Msa1446110:CDS | 30.0% | |
| AAATGGGGCTGAAATTTATT+TGG | - | tig0031267:23626-23645 | Msa1446110:CDS | 30.0% | |
| CTTCAAACAACAATTCCATT+TGG | - | tig0031267:23657-23676 | Msa1446110:intron | 30.0% | |
| ! | AAAATTGGTTGCTTTCCAAA+TGG | + | tig0031267:23675-23694 | None:intergenic | 30.0% |
| ! | TGGAAAGCAACCAATTTTAT+TGG | - | tig0031267:23677-23696 | Msa1446110:intron | 30.0% |
| !!! | TTTTTTTTTTTCCTTCGCCT+CGG | - | tig0031267:23928-23947 | Msa1446110:intron | 30.0% |
| ACGATCATACTAGTAAATTG+TGG | + | tig0031267:24033-24052 | None:intergenic | 30.0% | |
| ! | TCAACGAGATCTTATGTTTT+GGG | + | tig0031267:24056-24075 | None:intergenic | 30.0% |
| TAATGCAGCTGAAATTTGAA+AGG | - | tig0031267:24234-24253 | Msa1446110:intron | 30.0% | |
| ! | TTGAAAATTATCCCTTTTGC+AGG | - | tig0031267:24436-24455 | Msa1446110:CDS | 30.0% |
| TCTCATTTGAATCAAACCAT+TGG | + | tig0031267:24479-24498 | None:intergenic | 30.0% | |
| GAATAATTGGTATTATAGGG+TGG | - | tig0031267:24509-24528 | Msa1446110:CDS | 30.0% | |
| ATAATTGGTATTATAGGGTG+GGG | - | tig0031267:24511-24530 | Msa1446110:CDS | 30.0% | |
| TGAATGTAGATAGAACCAAA+GGG | + | tig0031267:24590-24609 | None:intergenic | 30.0% | |
| TTGAATGTAGATAGAACCAA+AGG | + | tig0031267:24591-24610 | None:intergenic | 30.0% | |
| !! | CAATTTGTTGGATTTGCATT+TGG | - | tig0031267:24616-24635 | Msa1446110:CDS | 30.0% |
| GTTATTATAACATGAGTCAG+TGG | + | tig0031267:24753-24772 | None:intergenic | 30.0% | |
| AACCATGTATGTTCAGATAT+TGG | - | tig0031267:24931-24950 | Msa1446110:intron | 30.0% | |
| ATTCTTCTTGAGACCAAATA+GGG | - | tig0031267:24955-24974 | Msa1446110:intron | 30.0% | |
| AGTTATCGTTCTCGAAATAT+TGG | - | tig0031267:25138-25157 | Msa1446110:intron | 30.0% | |
| ! | TGATCAAAAGAGCATATTCA+CGG | - | tig0031267:25621-25640 | Msa1446110:CDS | 30.0% |
| GCAAAATTTCTACAACATGT+AGG | - | tig0031267:25695-25714 | Msa1446110:five_prime_UTR | 30.0% | |
| !! | AGTCTCTTGCATTTCAAGTT+TGG | + | tig0031267:22330-22349 | None:intergenic | 35.0% |
| ACTACCATTGTTCCTATCTT+TGG | - | tig0031267:22419-22438 | Msa1446110:three_prime_UTR | 35.0% | |
| TGATCCAAAGATAGGAACAA+TGG | + | tig0031267:22426-22445 | None:intergenic | 35.0% | |
| AATGGCAAAGCTAAGATCTT+TGG | - | tig0031267:22463-22482 | Msa1446110:three_prime_UTR | 35.0% | |
| ! | TAAGATCTTTGGTTCAGCTA+TGG | - | tig0031267:22474-22493 | Msa1446110:three_prime_UTR | 35.0% |
| GATATATTCTGATAAGGTGG+AGG | + | tig0031267:22620-22639 | None:intergenic | 35.0% | |
| TAGAAGTAGAACCAACAATG+AGG | + | tig0031267:22716-22735 | None:intergenic | 35.0% | |
| GTGAATGGAAAAAATGTGGT+TGG | + | tig0031267:23144-23163 | None:intergenic | 35.0% | |
| CCTTGTGAATGGAAAAAATG+TGG | + | tig0031267:23148-23167 | None:intergenic | 35.0% | |
| !!! | CCACATTTTTTCCATTCACA+AGG | - | tig0031267:23145-23164 | Msa1446110:CDS | 35.0% |
| TCTAGAGATGGAAAAATGGT+CGG | - | tig0031267:23462-23481 | Msa1446110:CDS | 35.0% | |
| TCAGAAGTCATTGCAAACAA+AGG | - | tig0031267:23564-23583 | Msa1446110:CDS | 35.0% | |
| ! | TTTTCTTCAGGTGCAAAATC+AGG | - | tig0031267:23771-23790 | Msa1446110:intron | 35.0% |
| ! | GTTAATGTTAAAAGGGGTGT+TGG | + | tig0031267:23986-24005 | None:intergenic | 35.0% |
| ! | GTCAACGAGATCTTATGTTT+TGG | + | tig0031267:24057-24076 | None:intergenic | 35.0% |
| !! | AGCAGAGAGCTTTTTATTTG+AGG | - | tig0031267:24341-24360 | Msa1446110:CDS | 35.0% |
| !! | GCAGAGAGCTTTTTATTTGA+GGG | - | tig0031267:24342-24361 | Msa1446110:CDS | 35.0% |
| GAATGTAGATAGAACCAAAG+GGG | + | tig0031267:24589-24608 | None:intergenic | 35.0% | |
| AGTAGAGTTGTAATCCAAGA+AGG | + | tig0031267:24654-24673 | None:intergenic | 35.0% | |
| TGCCAATATCTGAACATACA+TGG | + | tig0031267:24936-24955 | None:intergenic | 35.0% | |
| CATTCTTCTTGAGACCAAAT+AGG | - | tig0031267:24954-24973 | Msa1446110:intron | 35.0% | |
| ATTCCAAGTTTCGCAAAATG+TGG | - | tig0031267:24978-24997 | Msa1446110:intron | 35.0% | |
| ! | ATTCCACATTTTGCGAAACT+TGG | + | tig0031267:24984-25003 | None:intergenic | 35.0% |
| AATTTGTACCACAGTTGGTT+TGG | - | tig0031267:25001-25020 | Msa1446110:intron | 35.0% | |
| CATTCCCAAAACTATGTTCA+AGG | + | tig0031267:25050-25069 | None:intergenic | 35.0% | |
| ! | CATTTGGAAATTTGGTGGAA+GGG | + | tig0031267:25191-25210 | None:intergenic | 35.0% |
| AGAGGATCCATTTGGAAATT+TGG | + | tig0031267:25199-25218 | None:intergenic | 35.0% | |
| AATTTCCAAATGGATCCTCT+TGG | - | tig0031267:25199-25218 | Msa1446110:intron | 35.0% | |
| AAAGTTAGGATTGTCCTTCT+TGG | + | tig0031267:25418-25437 | None:intergenic | 35.0% | |
| AAGAAGGACAATCCTAACTT+TGG | - | tig0031267:25417-25436 | Msa1446110:intron | 35.0% | |
| ! | GATCAAAAGAGCATATTCAC+GGG | - | tig0031267:25622-25641 | Msa1446110:CDS | 35.0% |
| ATGTTATTCTATGAAGCACG+AGG | - | tig0031267:25657-25676 | Msa1446110:five_prime_UTR | 35.0% | |
| AAATGTGTATGCCTCTTAAC+TGG | + | tig0031267:25735-25754 | None:intergenic | 35.0% | |
| CTAACAACAAGACAGTTGAG+AGG | + | tig0031267:22357-22376 | None:intergenic | 40.0% | |
| !! | CTCTCAACTGTCTTGTTGTT+AGG | - | tig0031267:22355-22374 | Msa1446110:three_prime_UTR | 40.0% |
| GATCAGTGTGATCCAAAGAT+AGG | + | tig0031267:22434-22453 | None:intergenic | 40.0% | |
| ATCTTTGGATCACACTGATC+TGG | - | tig0031267:22434-22453 | Msa1446110:three_prime_UTR | 40.0% | |
| ACACTGATCTGGTCTATGAA+TGG | - | tig0031267:22445-22464 | Msa1446110:three_prime_UTR | 40.0% | |
| ! | AGCTATGGCCATCTTTTGTT+AGG | - | tig0031267:22489-22508 | Msa1446110:three_prime_UTR | 40.0% |
| TGTGTCATCTCCTAATGCAA+TGG | + | tig0031267:22549-22568 | None:intergenic | 40.0% | |
| TGGAAAAAATGTGGTTGGGA+TGG | + | tig0031267:23139-23158 | None:intergenic | 40.0% | |
| GATCTGATTGGAATTGGACT+CGG | + | tig0031267:23198-23217 | None:intergenic | 40.0% | |
| !! | GGGATTGGATTTTCTAGAGA+TGG | - | tig0031267:23450-23469 | Msa1446110:CDS | 40.0% |
| !! | GTGGGATGGATTAATAAACG+TGG | - | tig0031267:23498-23517 | Msa1446110:CDS | 40.0% |
| TTTGACAGATGGTGTTCATG+TGG | + | tig0031267:23720-23739 | None:intergenic | 40.0% | |
| TGTCATCATGCTTTGACAGA+TGG | + | tig0031267:23731-23750 | None:intergenic | 40.0% | |
| TTGGATAGCTCAAGAGTTAG+AGG | + | tig0031267:23967-23986 | None:intergenic | 40.0% | |
| ! | TATCCCTTTTGCAGGTTCTA+TGG | - | tig0031267:24444-24463 | Msa1446110:CDS | 40.0% |
| GATCCATAGAACCTGCAAAA+GGG | + | tig0031267:24450-24469 | None:intergenic | 40.0% | |
| TGAATCAAACCATTGGATGC+TGG | + | tig0031267:24472-24491 | None:intergenic | 40.0% | |
| ! | TGCGAGGTACTTCAAACATA+AGG | - | tig0031267:24561-24580 | Msa1446110:CDS | 40.0% |
| TCAAACATAAGGAACCCCTT+TGG | - | tig0031267:24572-24591 | Msa1446110:CDS | 40.0% | |
| TGGTATGTGGACATGCATTT+GGG | + | tig0031267:24677-24696 | None:intergenic | 40.0% | |
| CCTGAAGAATACTTAGCACA+AGG | + | tig0031267:24726-24745 | None:intergenic | 40.0% | |
| CCTTGTGCTAAGTATTCTTC+AGG | - | tig0031267:24723-24742 | Msa1446110:intron | 40.0% | |
| CGAAACTTGGAATCCCTATT+TGG | + | tig0031267:24971-24990 | None:intergenic | 40.0% | |
| TGTGGAATTTGTACCACAGT+TGG | - | tig0031267:24996-25015 | Msa1446110:intron | 40.0% | |
| ! | TGCAGCCTTGAACATAGTTT+TGG | - | tig0031267:25042-25061 | Msa1446110:intron | 40.0% |
| ! | GCAGCCTTGAACATAGTTTT+GGG | - | tig0031267:25043-25062 | Msa1446110:intron | 40.0% |
| AATGCTTGGAAGACAAGCTA+TGG | - | tig0031267:25088-25107 | Msa1446110:intron | 40.0% | |
| ACAAGCTATGGATTCCTTGT+TGG | - | tig0031267:25100-25119 | Msa1446110:intron | 40.0% | |
| ! | CCATTTGGAAATTTGGTGGA+AGG | + | tig0031267:25192-25211 | None:intergenic | 40.0% |
| CCTTCCACCAAATTTCCAAA+TGG | - | tig0031267:25189-25208 | Msa1446110:intron | 40.0% | |
| GGATCCATTTGGAAATTTGG+TGG | + | tig0031267:25196-25215 | None:intergenic | 40.0% | |
| GGAAAGATTTCTTCTCCAAG+AGG | + | tig0031267:25217-25236 | None:intergenic | 40.0% | |
| ATAATGCAGGGTGAATGTGT+TGG | - | tig0031267:25320-25339 | Msa1446110:intron | 40.0% | |
| TACCTAGAAGTTTGCCAAGA+AGG | - | tig0031267:25401-25420 | Msa1446110:intron | 40.0% | |
| TTCAATCTCAAGTTCATGCG+AGG | + | tig0031267:25446-25465 | None:intergenic | 40.0% | |
| AGGAGATGACACAACATCGT+CGG | - | tig0031267:22556-22575 | Msa1446110:three_prime_UTR | 45.0% | |
| TATTCTGATAAGGTGGAGGG+AGG | + | tig0031267:22616-22635 | None:intergenic | 45.0% | |
| CTCCAATATGCAAACCCGTT+TGG | - | tig0031267:22642-22661 | Msa1446110:three_prime_UTR | 45.0% | |
| ! | TGCCAAACGGGTTTGCATAT+TGG | + | tig0031267:22647-22666 | None:intergenic | 45.0% |
| ACCAGATTCTCTACGGAAGT+CGG | + | tig0031267:23094-23113 | None:intergenic | 45.0% | |
| ACTTCCGTAGAGAATCTGGT+TGG | - | tig0031267:23094-23113 | Msa1446110:CDS | 45.0% | |
| ATGGATGATCTCGCTAAAGG+TGG | + | tig0031267:23120-23139 | None:intergenic | 45.0% | |
| TCGGGTTCAAACCTTGTGAA+TGG | + | tig0031267:23159-23178 | None:intergenic | 45.0% | |
| TGAACCCGAAGCCTTTCTTA+AGG | - | tig0031267:23170-23189 | Msa1446110:intron | 45.0% | |
| GGATCCTTAAGAAAGGCTTC+GGG | + | tig0031267:23177-23196 | None:intergenic | 45.0% | |
| CGGATCCTTAAGAAAGGCTT+CGG | + | tig0031267:23178-23197 | None:intergenic | 45.0% | |
| TGGACTCGGATCCTTAAGAA+AGG | + | tig0031267:23184-23203 | None:intergenic | 45.0% | |
| TTATCTGCACCCTACACAGT+TGG | - | tig0031267:23420-23439 | Msa1446110:CDS | 45.0% | |
| TATCTGCACCCTACACAGTT+GGG | - | tig0031267:23421-23440 | Msa1446110:CDS | 45.0% | |
| ! | AATGGTCGGTTCAAGTGCAA+TGG | - | tig0031267:23476-23495 | Msa1446110:CDS | 45.0% |
| ATGGTGTTCATGTGGATGCT+TGG | + | tig0031267:23712-23731 | None:intergenic | 45.0% | |
| GGATCCATAGAACCTGCAAA+AGG | + | tig0031267:24451-24470 | None:intergenic | 45.0% | |
| TCTATGGATCCAGCATCCAA+TGG | - | tig0031267:24460-24479 | Msa1446110:CDS | 45.0% | |
| TGGGGATTAATCCTACCAGT+AGG | - | tig0031267:24529-24548 | Msa1446110:CDS | 45.0% | |
| CAACAATTGCACCTACTGGT+AGG | + | tig0031267:24543-24562 | None:intergenic | 45.0% | |
| CTGGTATGTGGACATGCATT+TGG | + | tig0031267:24678-24697 | None:intergenic | 45.0% | |
| ATACCAGCTCACAGAGGAAT+TGG | - | tig0031267:24691-24710 | Msa1446110:CDS | 45.0% | |
| CCATTCTTCCAAACCAACTG+TGG | + | tig0031267:25012-25031 | None:intergenic | 45.0% | |
| !! | CCACAGTTGGTTTGGAAGAA+TGG | - | tig0031267:25009-25028 | Msa1446110:intron | 45.0% |
| CTTCTCCAAGAGGATCCATT+TGG | + | tig0031267:25207-25226 | None:intergenic | 45.0% | |
| GTCCTTCTTGGCAAACTTCT+AGG | + | tig0031267:25406-25425 | None:intergenic | 45.0% | |
| ! | AGTTTCTGCTGCTGCTTGAT+CGG | - | tig0031267:25492-25511 | Msa1446110:CDS | 45.0% |
| ! | CATCGTCGGAAAGTACATGC+AGG | - | tig0031267:22570-22589 | Msa1446110:three_prime_UTR | 50.0% |
| CCAGATTCTCTACGGAAGTC+GGG | + | tig0031267:23093-23112 | None:intergenic | 50.0% | |
| GTGGCCAACCAGATTCTCTA+CGG | + | tig0031267:23101-23120 | None:intergenic | 50.0% | |
| GGGATGGATGATCTCGCTAA+AGG | + | tig0031267:23123-23142 | None:intergenic | 50.0% | |
| ! | GTCGGTTCAAGTGCAATGGT+GGG | - | tig0031267:23480-23499 | Msa1446110:CDS | 50.0% |
| ! | GTTCAAGTGCAATGGTGGGA+TGG | - | tig0031267:23484-23503 | Msa1446110:CDS | 50.0% |
| GCAGCAGGCACGTTATTTAG+AGG | + | tig0031267:23597-23616 | None:intergenic | 50.0% | |
| AAATAACGTGCCTGCTGCTG+TGG | - | tig0031267:23599-23618 | Msa1446110:CDS | 50.0% | |
| CTGCTGCTGTGGCAACAAAT+GGG | - | tig0031267:23610-23629 | Msa1446110:CDS | 50.0% | |
| TGCTGCTGTGGCAACAAATG+GGG | - | tig0031267:23611-23630 | Msa1446110:CDS | 50.0% | |
| ATGAGTTCAAACCGAGGCGA+AGG | + | tig0031267:23942-23961 | None:intergenic | 50.0% | |
| GAGGTCATGAGTTCAAACCG+AGG | + | tig0031267:23948-23967 | None:intergenic | 50.0% | |
| CTCGCAACAATTGCACCTAC+TGG | + | tig0031267:24547-24566 | None:intergenic | 50.0% | |
| CAGTAGGTGCAATTGTTGCG+AGG | - | tig0031267:24545-24564 | Msa1446110:CDS | 50.0% | |
| !! | GGACTTGCTACTGTCCTTCT+TGG | - | tig0031267:24637-24656 | Msa1446110:CDS | 50.0% |
| TTCCTCTGTGAGCTGGTATG+TGG | + | tig0031267:24690-24709 | None:intergenic | 50.0% | |
| ATGCCAATTCCTCTGTGAGC+TGG | + | tig0031267:24697-24716 | None:intergenic | 50.0% | |
| !!! | GTTTTGGGAATGCAAGCAGC+AGG | - | tig0031267:25058-25077 | Msa1446110:intron | 50.0% |
| CATGCGAGGAAGCCAAAGTT+AGG | + | tig0031267:25432-25451 | None:intergenic | 50.0% | |
| ! | GTTTCTGCTGCTGCTTGATC+GGG | - | tig0031267:25493-25512 | Msa1446110:CDS | 50.0% |
| CACGAGGAGTCTAACTGAAG+AGG | - | tig0031267:25673-25692 | Msa1446110:five_prime_UTR | 50.0% | |
| CCCGACTTCCGTAGAGAATC+TGG | - | tig0031267:23090-23109 | Msa1446110:CDS | 55.0% | |
| TGCACCCTACACAGTTGGGT+GGG | - | tig0031267:23425-23444 | Msa1446110:CDS | 55.0% | |
| ! | GGTCGGTTCAAGTGCAATGG+TGG | - | tig0031267:23479-23498 | Msa1446110:CDS | 55.0% |
| ! | CCATTTGTTGCCACAGCAGC+AGG | + | tig0031267:23612-23631 | None:intergenic | 55.0% |
| CCTGCTGCTGTGGCAACAAA+TGG | - | tig0031267:23609-23628 | Msa1446110:CDS | 55.0% | |
| GTCCACATACCAGCTCACAG+AGG | - | tig0031267:24685-24704 | Msa1446110:CDS | 55.0% | |
| CAGCAGGAGCAACGAATGCT+TGG | - | tig0031267:25074-25093 | Msa1446110:intron | 55.0% | |
| CTGCACCCTACACAGTTGGG+TGG | - | tig0031267:23424-23443 | Msa1446110:CDS | 60.0% | |
| ACCCTACACAGTTGGGTGGG+TGG | - | tig0031267:23428-23447 | Msa1446110:CDS | 60.0% | |
| CCCACCCACCCAACTGTGTA+GGG | + | tig0031267:23432-23451 | None:intergenic | 60.0% | |
| CCCTACACAGTTGGGTGGGT+GGG | - | tig0031267:23429-23448 | Msa1446110:CDS | 60.0% | |
| CCTACACAGTTGGGTGGGTG+GGG | - | tig0031267:23430-23449 | Msa1446110:CDS | 60.0% | |
| ACAGTTGGGTGGGTGGGGAT+TGG | - | tig0031267:23435-23454 | Msa1446110:CDS | 60.0% | |
| CCCCACCCACCCAACTGTGT+AGG | + | tig0031267:23433-23452 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031267 | gene | 22314 | 25803 | 22314 | ID=Msa1446110;Name=Msa1446110 |
| tig0031267 | mRNA | 22314 | 25803 | 22314 | ID=Msa1446110-mRNA-1;Parent=Msa1446110;Name=Msa1446110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|1|1|1|1|5|470|408 |
| tig0031267 | exon | 22314 | 22788 | 22314 | ID=Msa1446110-mRNA-1:exon:15294;Parent=Msa1446110-mRNA-1 |
| tig0031267 | exon | 22861 | 23170 | 22861 | ID=Msa1446110-mRNA-1:exon:15293;Parent=Msa1446110-mRNA-1 |
| tig0031267 | exon | 23373 | 23659 | 23373 | ID=Msa1446110-mRNA-1:exon:15292;Parent=Msa1446110-mRNA-1 |
| tig0031267 | exon | 24325 | 24730 | 24325 | ID=Msa1446110-mRNA-1:exon:15291;Parent=Msa1446110-mRNA-1 |
| tig0031267 | exon | 25435 | 25803 | 25435 | ID=Msa1446110-mRNA-1:exon:15290;Parent=Msa1446110-mRNA-1 |
| tig0031267 | five_prime_UTR | 25654 | 25803 | 25654 | ID=Msa1446110-mRNA-1:five_prime_utr;Parent=Msa1446110-mRNA-1 |
| tig0031267 | CDS | 25435 | 25653 | 25435 | ID=Msa1446110-mRNA-1:cds;Parent=Msa1446110-mRNA-1 |
| tig0031267 | CDS | 24325 | 24730 | 24325 | ID=Msa1446110-mRNA-1:cds;Parent=Msa1446110-mRNA-1 |
| tig0031267 | CDS | 23373 | 23659 | 23373 | ID=Msa1446110-mRNA-1:cds;Parent=Msa1446110-mRNA-1 |
| tig0031267 | CDS | 22861 | 23170 | 22861 | ID=Msa1446110-mRNA-1:cds;Parent=Msa1446110-mRNA-1 |
| tig0031267 | CDS | 22784 | 22788 | 22784 | ID=Msa1446110-mRNA-1:cds;Parent=Msa1446110-mRNA-1 |
| tig0031267 | three_prime_UTR | 22314 | 22783 | 22314 | ID=Msa1446110-mRNA-1:three_prime_utr;Parent=Msa1446110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
