Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1427290 | XP_013458030.1 | 98.456 | 518 | 7 | 1 | 1 | 517 | 1 | 518 | 0.0 | 1060 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1427290 | sp|Q4V398|RRT1_ARATH | 73.053 | 475 | 121 | 2 | 35 | 508 | 31 | 499 | 0.0 | 747 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1427290 | A0A072URS3 | 98.456 | 518 | 7 | 1 | 1 | 517 | 1 | 518 | 0.0 | 1060 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1331120 | Msa1427290 | 0.812450 | 4.212960e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1427290 | MtrunA17_Chr4g0061781 | 98.456 | 518 | 7 | 1 | 1 | 517 | 1 | 518 | 0.0 | 1060 |
Msa1427290 | MtrunA17_Chr2g0307971 | 80.271 | 517 | 91 | 3 | 3 | 517 | 12 | 519 | 0.0 | 854 |
Msa1427290 | MtrunA17_Chr6g0455571 | 77.966 | 472 | 101 | 1 | 42 | 513 | 45 | 513 | 0.0 | 782 |
Msa1427290 | MtrunA17_Chr5g0417871 | 61.064 | 470 | 177 | 4 | 42 | 507 | 9 | 476 | 0.0 | 603 |
Msa1427290 | MtrunA17_Chr4g0042711 | 60.768 | 469 | 177 | 3 | 40 | 507 | 26 | 488 | 0.0 | 601 |
Msa1427290 | MtrunA17_Chr4g0070551 | 48.849 | 391 | 193 | 4 | 114 | 503 | 227 | 611 | 7.07e-131 | 394 |
Msa1427290 | MtrunA17_Chr5g0426591 | 48.756 | 402 | 197 | 4 | 114 | 507 | 110 | 510 | 1.65e-130 | 389 |
Msa1427290 | MtrunA17_Chr4g0008451 | 49.361 | 391 | 191 | 4 | 114 | 503 | 231 | 615 | 1.29e-128 | 389 |
Msa1427290 | MtrunA17_Chr5g0436321 | 47.160 | 405 | 204 | 6 | 116 | 516 | 162 | 560 | 2.94e-127 | 382 |
Msa1427290 | MtrunA17_Chr3g0132371 | 49.132 | 403 | 189 | 6 | 115 | 507 | 141 | 537 | 2.86e-123 | 372 |
Msa1427290 | MtrunA17_Chr3g0129981 | 45.154 | 423 | 214 | 8 | 105 | 514 | 100 | 517 | 1.13e-116 | 354 |
Msa1427290 | MtrunA17_Chr5g0399311 | 42.394 | 401 | 217 | 8 | 108 | 507 | 117 | 504 | 9.97e-95 | 297 |
Msa1427290 | MtrunA17_Chr4g0056061 | 41.565 | 409 | 227 | 7 | 108 | 515 | 101 | 498 | 1.64e-93 | 295 |
Msa1427290 | MtrunA17_Chr3g0143821 | 42.532 | 395 | 213 | 7 | 114 | 507 | 110 | 491 | 2.67e-93 | 295 |
Msa1427290 | MtrunA17_Chr5g0448581 | 39.140 | 442 | 234 | 9 | 68 | 507 | 90 | 498 | 7.21e-90 | 286 |
Msa1427290 | MtrunA17_Chr1g0204121 | 40.191 | 418 | 210 | 12 | 104 | 507 | 82 | 473 | 3.37e-85 | 272 |
Msa1427290 | MtrunA17_Chr5g0412251 | 34.874 | 476 | 242 | 12 | 64 | 504 | 56 | 498 | 1.09e-83 | 268 |
Msa1427290 | MtrunA17_Chr3g0132951 | 34.672 | 473 | 239 | 10 | 68 | 504 | 74 | 512 | 9.07e-83 | 266 |
Msa1427290 | MtrunA17_Chr1g0160781 | 36.627 | 415 | 233 | 10 | 114 | 511 | 148 | 549 | 1.95e-80 | 261 |
Msa1427290 | MtrunA17_Chr5g0424241 | 38.756 | 418 | 221 | 12 | 116 | 510 | 158 | 563 | 5.66e-80 | 261 |
Msa1427290 | MtrunA17_Chr4g0043911 | 36.627 | 415 | 233 | 10 | 114 | 511 | 149 | 550 | 6.02e-80 | 260 |
Msa1427290 | MtrunA17_Chr3g0123521 | 36.761 | 389 | 222 | 7 | 114 | 485 | 149 | 530 | 6.72e-80 | 259 |
Msa1427290 | MtrunA17_Chr3g0077321 | 36.385 | 426 | 241 | 10 | 106 | 512 | 138 | 552 | 1.02e-78 | 256 |
Msa1427290 | MtrunA17_Chr1g0204141 | 37.381 | 420 | 222 | 12 | 104 | 507 | 82 | 476 | 6.06e-77 | 251 |
Msa1427290 | MtrunA17_Chr2g0284071 | 37.101 | 407 | 212 | 11 | 109 | 474 | 209 | 612 | 6.43e-74 | 246 |
Msa1427290 | MtrunA17_Chr3g0087291 | 32.238 | 487 | 288 | 10 | 6 | 486 | 88 | 538 | 2.08e-70 | 235 |
Msa1427290 | MtrunA17_Chr4g0075311 | 35.160 | 438 | 228 | 10 | 115 | 507 | 164 | 590 | 3.00e-67 | 227 |
Msa1427290 | MtrunA17_Chr4g0010511 | 37.634 | 372 | 220 | 6 | 118 | 486 | 236 | 598 | 3.10e-66 | 225 |
Msa1427290 | MtrunA17_Chr4g0003561 | 35.593 | 354 | 197 | 9 | 114 | 457 | 74 | 406 | 6.20e-58 | 199 |
Msa1427290 | MtrunA17_Chr7g0240241 | 58.871 | 124 | 47 | 1 | 275 | 394 | 1 | 124 | 9.63e-45 | 154 |
Msa1427290 | MtrunA17_Chr1g0146501 | 38.235 | 272 | 152 | 8 | 114 | 371 | 89 | 358 | 1.21e-42 | 161 |
Msa1427290 | MtrunA17_Chr3g0127811 | 32.231 | 363 | 204 | 11 | 46 | 395 | 9 | 342 | 1.14e-41 | 155 |
Msa1427290 | MtrunA17_Chr7g0220381 | 31.208 | 298 | 185 | 7 | 114 | 395 | 97 | 390 | 4.29e-39 | 151 |
Msa1427290 | MtrunA17_Chr1g0172911 | 40.964 | 166 | 44 | 3 | 112 | 277 | 18 | 129 | 3.49e-24 | 97.8 |
Msa1427290 | MtrunA17_Chr4g0002361 | 25.434 | 346 | 208 | 13 | 111 | 446 | 82 | 387 | 3.58e-22 | 99.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1427290 | AT5G15740.1 | 73.053 | 475 | 121 | 2 | 35 | 508 | 31 | 499 | 0.0 | 747 |
Msa1427290 | AT3G02250.1 | 73.191 | 470 | 119 | 2 | 40 | 508 | 36 | 499 | 0.0 | 734 |
Msa1427290 | AT1G14020.1 | 60.171 | 467 | 174 | 3 | 42 | 507 | 27 | 482 | 0.0 | 602 |
Msa1427290 | AT2G03280.1 | 57.234 | 470 | 182 | 6 | 40 | 507 | 28 | 480 | 0.0 | 562 |
Msa1427290 | AT2G03280.2 | 54.125 | 497 | 182 | 7 | 40 | 507 | 28 | 507 | 0.0 | 548 |
Msa1427290 | AT2G37980.1 | 50.505 | 396 | 188 | 6 | 114 | 507 | 225 | 614 | 1.15e-132 | 399 |
Msa1427290 | AT5G01100.1 | 48.878 | 401 | 185 | 6 | 112 | 503 | 213 | 602 | 2.97e-128 | 387 |
Msa1427290 | AT3G54100.1 | 47.980 | 396 | 198 | 6 | 114 | 507 | 221 | 610 | 1.59e-125 | 381 |
Msa1427290 | AT1G22460.1 | 46.043 | 417 | 205 | 6 | 105 | 507 | 146 | 556 | 8.85e-125 | 377 |
Msa1427290 | AT5G35570.1 | 47.815 | 389 | 196 | 5 | 116 | 503 | 252 | 634 | 1.34e-124 | 379 |
Msa1427290 | AT5G64600.1 | 44.235 | 425 | 216 | 8 | 102 | 512 | 101 | 518 | 2.77e-115 | 351 |
Msa1427290 | AT4G38390.1 | 42.532 | 395 | 214 | 7 | 114 | 507 | 122 | 504 | 1.18e-95 | 301 |
Msa1427290 | AT1G76270.1 | 42.750 | 400 | 212 | 7 | 110 | 507 | 101 | 485 | 6.09e-94 | 297 |
Msa1427290 | AT1G20550.1 | 40.777 | 412 | 213 | 9 | 110 | 512 | 104 | 493 | 8.96e-94 | 296 |
Msa1427290 | AT4G16650.2 | 42.289 | 402 | 218 | 8 | 107 | 507 | 114 | 502 | 3.22e-88 | 281 |
Msa1427290 | AT4G16650.1 | 42.289 | 402 | 218 | 8 | 107 | 507 | 114 | 502 | 3.22e-88 | 281 |
Msa1427290 | AT4G24530.1 | 35.381 | 472 | 237 | 9 | 68 | 504 | 75 | 513 | 1.46e-85 | 274 |
Msa1427290 | AT1G04910.1 | 39.855 | 414 | 230 | 9 | 108 | 516 | 83 | 482 | 6.39e-84 | 270 |
Msa1427290 | AT1G38065.2 | 38.133 | 375 | 209 | 9 | 115 | 473 | 26 | 393 | 2.74e-82 | 263 |
Msa1427290 | AT1G38065.1 | 38.133 | 375 | 209 | 9 | 115 | 473 | 36 | 403 | 3.96e-82 | 263 |
Msa1427290 | AT5G65470.1 | 34.810 | 474 | 239 | 11 | 68 | 504 | 59 | 499 | 6.36e-82 | 264 |
Msa1427290 | AT3G26370.1 | 36.616 | 396 | 225 | 8 | 107 | 485 | 152 | 538 | 2.32e-81 | 264 |
Msa1427290 | AT1G38131.1 | 38.133 | 375 | 209 | 9 | 115 | 473 | 155 | 522 | 4.16e-81 | 264 |
Msa1427290 | AT1G35510.1 | 36.285 | 463 | 237 | 14 | 68 | 509 | 134 | 559 | 3.38e-79 | 258 |
Msa1427290 | AT2G01480.1 | 35.181 | 415 | 239 | 10 | 114 | 511 | 153 | 554 | 2.08e-76 | 251 |
Msa1427290 | AT2G01480.2 | 36.915 | 363 | 211 | 6 | 114 | 461 | 153 | 512 | 3.58e-76 | 249 |
Msa1427290 | AT1G14970.3 | 36.148 | 379 | 221 | 7 | 115 | 478 | 9 | 381 | 1.01e-75 | 245 |
Msa1427290 | AT1G11990.1 | 37.990 | 408 | 226 | 11 | 116 | 507 | 191 | 587 | 1.10e-75 | 250 |
Msa1427290 | AT1G14970.2 | 36.148 | 379 | 221 | 7 | 115 | 478 | 35 | 407 | 1.88e-75 | 245 |
Msa1427290 | AT5G63390.1 | 37.968 | 374 | 217 | 6 | 118 | 486 | 167 | 530 | 1.94e-75 | 248 |
Msa1427290 | AT1G14970.1 | 36.148 | 379 | 221 | 7 | 115 | 478 | 155 | 527 | 5.37e-74 | 244 |
Msa1427290 | AT1G62330.1 | 34.475 | 438 | 230 | 10 | 116 | 507 | 222 | 648 | 7.40e-74 | 246 |
Msa1427290 | AT1G11990.2 | 34.831 | 445 | 226 | 11 | 116 | 507 | 176 | 609 | 4.23e-70 | 236 |
Msa1427290 | AT2G44500.1 | 36.702 | 376 | 221 | 6 | 118 | 487 | 180 | 544 | 3.21e-69 | 232 |
Msa1427290 | AT1G29200.4 | 36.139 | 404 | 206 | 8 | 115 | 474 | 70 | 465 | 1.15e-68 | 229 |
Msa1427290 | AT1G29200.1 | 36.139 | 404 | 206 | 8 | 115 | 474 | 70 | 465 | 1.15e-68 | 229 |
Msa1427290 | AT1G29200.2 | 36.139 | 404 | 206 | 8 | 115 | 474 | 186 | 581 | 1.06e-67 | 229 |
Msa1427290 | AT1G29200.3 | 35.840 | 399 | 204 | 8 | 120 | 474 | 1 | 391 | 3.40e-66 | 220 |
Msa1427290 | AT3G07900.1 | 34.828 | 379 | 224 | 5 | 118 | 487 | 191 | 555 | 5.02e-65 | 221 |
Msa1427290 | AT1G52630.1 | 35.854 | 357 | 200 | 10 | 114 | 462 | 73 | 408 | 1.14e-57 | 198 |
Msa1427290 | AT1G52630.2 | 34.311 | 341 | 195 | 10 | 130 | 462 | 1 | 320 | 4.03e-49 | 173 |
Msa1427290 | AT3G03810.2 | 33.113 | 302 | 184 | 6 | 109 | 395 | 83 | 381 | 2.71e-46 | 172 |
Msa1427290 | AT3G03810.1 | 33.113 | 302 | 184 | 6 | 109 | 395 | 83 | 381 | 2.71e-46 | 172 |
Msa1427290 | AT3G26370.2 | 38.614 | 202 | 111 | 4 | 107 | 299 | 152 | 349 | 3.00e-41 | 153 |
Msa1427290 | AT3G30300.2 | 32.095 | 296 | 182 | 7 | 108 | 389 | 96 | 386 | 9.87e-39 | 150 |
Msa1427290 | AT3G30300.1 | 32.095 | 296 | 182 | 7 | 108 | 389 | 96 | 386 | 9.87e-39 | 150 |
Msa1427290 | AT2G44500.2 | 37.607 | 234 | 132 | 5 | 118 | 345 | 180 | 405 | 2.38e-36 | 140 |
Msa1427290 | AT1G51630.1 | 25.075 | 335 | 202 | 13 | 115 | 439 | 91 | 386 | 5.84e-17 | 83.6 |
Msa1427290 | AT3G21190.1 | 23.768 | 345 | 214 | 12 | 105 | 439 | 80 | 385 | 1.37e-16 | 82.4 |
Find 187 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTATAAAGTTTACCAATTT+TGG | 0.010006 | tig0026181:-60267 | None:intergenic |
TAACTTCACTCTTTGGAATT+TGG | 0.117923 | tig0026181:-57723 | None:intergenic |
CTTTAATTAAATCTACATTT+AGG | 0.125271 | tig0026181:+58173 | Msa1427290:five_prime_UTR |
TTCATATTCATATACAAATT+TGG | 0.156437 | tig0026181:+61440 | Msa1427290:three_prime_UTR |
CATTTCTGGTCCTTCATCTT+AGG | 0.184507 | tig0026181:+59842 | Msa1427290:CDS |
CATATACAAATTTGGATTAC+TGG | 0.218193 | tig0026181:+61448 | Msa1427290:three_prime_UTR |
CTGCGATGCAGAGTTAATTT+TGG | 0.222827 | tig0026181:+59748 | Msa1427290:CDS |
ATAGAAATAATCCTCTTCTT+TGG | 0.235561 | tig0026181:-61004 | None:intergenic |
CTAGCTTCGGGTTCGGGTTC+AGG | 0.255408 | tig0026181:+58292 | Msa1427290:CDS |
TTTAATTAAATCTACATTTA+GGG | 0.261089 | tig0026181:+58174 | Msa1427290:five_prime_UTR |
CTCTGGAGGTTGGCCGTTAT+TGG | 0.266699 | tig0026181:-59716 | None:intergenic |
TCGGGTTCGGGTTCAGGTTC+GGG | 0.268929 | tig0026181:+58298 | Msa1427290:CDS |
TAACTACAAGTGGCAAGATT+TGG | 0.276036 | tig0026181:+58237 | Msa1427290:CDS |
CATTGCTTATACAGATATCT+TGG | 0.286701 | tig0026181:+60820 | Msa1427290:intron |
TCGGGTTCAGGTTCGGGTTC+AGG | 0.288878 | tig0026181:+58304 | Msa1427290:CDS |
CCATGGTTAACTTCACTCTT+TGG | 0.290644 | tig0026181:-57730 | None:intergenic |
AACTTGATAAAACATCCTTT+TGG | 0.293087 | tig0026181:+59215 | Msa1427290:CDS |
GTGGGGTCCTCGAGTTCTTA+AGG | 0.294055 | tig0026181:+58417 | Msa1427290:CDS |
CCTTCACAGCTGAAGAAAAT+TGG | 0.303272 | tig0026181:-60924 | None:intergenic |
GAGAGACTAGCTTCGGGTTC+GGG | 0.304903 | tig0026181:+58286 | Msa1427290:CDS |
AAGCGTGACATTTAAATATC+TGG | 0.308808 | tig0026181:-59182 | None:intergenic |
TAGAAATAATCCTCTTCTTT+GGG | 0.308913 | tig0026181:-61003 | None:intergenic |
TCCTCTTCTTTGGGCTTGTC+AGG | 0.310596 | tig0026181:-60994 | None:intergenic |
TTCAAAGGAGTACCCAAAAT+TGG | 0.312076 | tig0026181:+60254 | Msa1427290:CDS |
TTCGGGTTCGGGTTCAGGTT+CGG | 0.312976 | tig0026181:+58297 | Msa1427290:CDS |
ACAATAACGGTGCACTGAAC+TGG | 0.336008 | tig0026181:+60899 | Msa1427290:CDS |
GAGCATCCGTTCTATTTAGA+TGG | 0.341371 | tig0026181:-59687 | None:intergenic |
GTTAGCAAGGTTGTAGGTAT+AGG | 0.342764 | tig0026181:+57757 | Msa1427290:five_prime_UTR |
TGGGGTCCTCGAGTTCTTAA+GGG | 0.351334 | tig0026181:+58418 | Msa1427290:CDS |
TCCCACATATGATGGAAATA+TGG | 0.356947 | tig0026181:+60483 | Msa1427290:CDS |
CTACTCAGCATATCATTTGA+TGG | 0.359944 | tig0026181:-61051 | None:intergenic |
GAAAGGTGATCAAGCTTCTA+AGG | 0.362439 | tig0026181:+59809 | Msa1427290:CDS |
ATTGCAGCCGGTGAAATATA+TGG | 0.367188 | tig0026181:+60207 | Msa1427290:CDS |
AACTACAAGTGGCAAGATTT+GGG | 0.370307 | tig0026181:+58238 | Msa1427290:CDS |
GCATGGGTAACCCTAGTAAA+AGG | 0.373604 | tig0026181:+60962 | Msa1427290:CDS |
GCAGTCTCCTCGGGTGTTAG+AGG | 0.386334 | tig0026181:-60138 | None:intergenic |
CTTCTTCCTTCTTCGCTCTC+CGG | 0.393711 | tig0026181:+57872 | Msa1427290:five_prime_UTR |
TGCACTCACCCTGCAATGTC+AGG | 0.395485 | tig0026181:-61390 | None:intergenic |
AGAGAGACTAGCTTCGGGTT+CGG | 0.397228 | tig0026181:+58285 | Msa1427290:CDS |
GATGGTTCTAAACATTCCTC+TGG | 0.405353 | tig0026181:-61033 | None:intergenic |
TTAAACTATAGAACGAGTTA+AGG | 0.407474 | tig0026181:+57691 | Msa1427290:five_prime_UTR |
AGGTGAAGTGTGAGAGAAAA+CGG | 0.407774 | tig0026181:-57921 | None:intergenic |
CTAAGATGAAGGACCAGAAA+TGG | 0.413370 | tig0026181:-59841 | None:intergenic |
GGGAAATGTTGTTGAATTTG+AGG | 0.413426 | tig0026181:-57950 | None:intergenic |
TTCATCTCAGATGGCAGCAT+TGG | 0.420480 | tig0026181:+60426 | Msa1427290:CDS |
CATCGCAGCTTCTGAATCTC+TGG | 0.422154 | tig0026181:-59733 | None:intergenic |
TAACTCTTGGGAGGAAGAAC+TGG | 0.422934 | tig0026181:-58523 | None:intergenic |
AGTAGCCACCCTGACATTGC+AGG | 0.431352 | tig0026181:+61381 | Msa1427290:three_prime_UTR |
GGCCATATTTCCATCATATG+TGG | 0.431890 | tig0026181:-60485 | None:intergenic |
ATAGTTCAATTAACAGCTAT+AGG | 0.432577 | tig0026181:+58388 | Msa1427290:CDS |
GAAGAGGTAGAATGAAACTA+TGG | 0.434488 | tig0026181:+58326 | Msa1427290:CDS |
TGTCAAGAGCCCTTAGTGTA+AGG | 0.436508 | tig0026181:-60161 | None:intergenic |
CACTTCTCAGATAGAGGAGT+TGG | 0.437132 | tig0026181:+59783 | Msa1427290:CDS |
ATTGCTTATACAGATATCTT+GGG | 0.438384 | tig0026181:+60821 | Msa1427290:intron |
AAATAGAACGGATGCTCGGC+TGG | 0.442470 | tig0026181:+59693 | Msa1427290:CDS |
TAAACTATAGAACGAGTTAA+GGG | 0.444344 | tig0026181:+57692 | Msa1427290:five_prime_UTR |
TCAGGTTCGGGTTCAGGAAG+AGG | 0.445171 | tig0026181:+58310 | Msa1427290:CDS |
GTGGCAAGATTTGGGTTGGA+TGG | 0.446241 | tig0026181:+58246 | Msa1427290:CDS |
ACTGTATTTCTTGTCTGCAT+TGG | 0.449364 | tig0026181:+58067 | Msa1427290:five_prime_UTR |
GCGGTGGCCCGCAACTACTT+TGG | 0.453403 | tig0026181:-60506 | None:intergenic |
GGTTAGGTTAGCAAGGTTGT+AGG | 0.453647 | tig0026181:+57751 | Msa1427290:five_prime_UTR |
AACAGCTATAGGTGATTTGT+GGG | 0.454993 | tig0026181:+58399 | Msa1427290:CDS |
TGCTTCAAATTCTAGAGCGT+TGG | 0.455802 | tig0026181:+58474 | Msa1427290:CDS |
TAGTGTAAGGGCAGTCTCCT+CGG | 0.458304 | tig0026181:-60148 | None:intergenic |
AGTGTAAGGGCAGTCTCCTC+GGG | 0.459191 | tig0026181:-60147 | None:intergenic |
GAGTGAAGTTAACCATGGTT+AGG | 0.461961 | tig0026181:+57735 | Msa1427290:five_prime_UTR |
TTTGGGTTGGATGGGTTTGA+AGG | 0.463262 | tig0026181:+58255 | Msa1427290:CDS |
TAACAGCTATAGGTGATTTG+TGG | 0.466819 | tig0026181:+58398 | Msa1427290:CDS |
TACTTGATGGTTTCGTGCAA+TGG | 0.469164 | tig0026181:+58754 | Msa1427290:CDS |
ACACTATGCCACCCGTTAGT+TGG | 0.471268 | tig0026181:+59486 | Msa1427290:CDS |
TTCTAAACATTCCTCTGGGT+TGG | 0.473630 | tig0026181:-61028 | None:intergenic |
GATCCACATCAAATATGTCT+TGG | 0.475690 | tig0026181:-59376 | None:intergenic |
GATAGAGGAGTTGGGCAGAA+AGG | 0.478505 | tig0026181:+59792 | Msa1427290:CDS |
TTCTCCACCATATATTTCAC+CGG | 0.478724 | tig0026181:-60214 | None:intergenic |
GAGATTCACTTCTCAGATAG+AGG | 0.481620 | tig0026181:+59777 | Msa1427290:CDS |
TGGCAAGATTTGGGTTGGAT+GGG | 0.493030 | tig0026181:+58247 | Msa1427290:CDS |
GCCATATTTCCATCATATGT+GGG | 0.493891 | tig0026181:-60484 | None:intergenic |
TGGTGGCCGGAGAGCGAAGA+AGG | 0.499510 | tig0026181:-57878 | None:intergenic |
GATGCTCGGCTGGCCAATAA+CGG | 0.501292 | tig0026181:+59703 | Msa1427290:CDS |
AGAGAAAACGGAAGGTGCTC+CGG | 0.503364 | tig0026181:-57909 | None:intergenic |
AATATGGCCAAAGTAGTTGC+GGG | 0.503736 | tig0026181:+60499 | Msa1427290:CDS |
GCAGATATGCCTATCCTTGG+TGG | 0.504562 | tig0026181:+60067 | Msa1427290:intron |
TCACCTAGGATCAGCCCAAA+AGG | 0.506855 | tig0026181:-59230 | None:intergenic |
ATTACTGGATCTGCAGTTTG+TGG | 0.507334 | tig0026181:+61463 | Msa1427290:three_prime_UTR |
ATGGTTCTAAACATTCCTCT+GGG | 0.512898 | tig0026181:-61032 | None:intergenic |
TCAAAATCATTCATCTCAGA+TGG | 0.513509 | tig0026181:+60417 | Msa1427290:CDS |
CAATAACGGTGCACTGAACT+GGG | 0.514418 | tig0026181:+60900 | Msa1427290:CDS |
AGGAGACTGCCCTTACACTA+AGG | 0.518063 | tig0026181:+60151 | Msa1427290:CDS |
GTCCTCGAGTTCTTAAGGGT+TGG | 0.518145 | tig0026181:+58422 | Msa1427290:CDS |
GATATGTCGGACCAACTAAC+GGG | 0.522657 | tig0026181:-59497 | None:intergenic |
TAGCACGTGACAAATGTGTT+TGG | 0.523017 | tig0026181:+61071 | Msa1427290:exon |
ACAAGTGGCAAGATTTGGGT+TGG | 0.524017 | tig0026181:+58242 | Msa1427290:CDS |
CAACTACAACGGTGATATTG+TGG | 0.525187 | tig0026181:+58359 | Msa1427290:CDS |
TCTAATCAAGCAAAAGCAGC+CGG | 0.526158 | tig0026181:+61259 | Msa1427290:three_prime_UTR |
TGTTGAATTTGAGGAAATGA+AGG | 0.526671 | tig0026181:-57941 | None:intergenic |
CTAATCAAGCAAAAGCAGCC+GGG | 0.527698 | tig0026181:+61260 | Msa1427290:three_prime_UTR |
TTGGCAGATATGCCTATCCT+TGG | 0.528212 | tig0026181:+60064 | Msa1427290:intron |
CCATCTCATACCTAAGATGA+AGG | 0.530904 | tig0026181:-59852 | None:intergenic |
TTTCTCTTTCCACCAAGGAT+AGG | 0.532477 | tig0026181:-60076 | None:intergenic |
TCCTAGACTGAAGCTGAAAG+TGG | 0.533990 | tig0026181:+59448 | Msa1427290:CDS |
AAGTAGTTGCGGGCCACCGC+AGG | 0.534311 | tig0026181:+60509 | Msa1427290:CDS |
GGTAGAAAACCAAGTGTACC+AGG | 0.535579 | tig0026181:-61124 | None:intergenic |
TCTTTCCTCACCACCTCCAT+CGG | 0.538194 | tig0026181:+57831 | Msa1427290:five_prime_UTR |
ATTAGTTGATAACTTCGATC+CGG | 0.538834 | tig0026181:+58116 | Msa1427290:five_prime_UTR |
GCTTCTGAATCTCTGGAGGT+TGG | 0.538969 | tig0026181:-59726 | None:intergenic |
ACTTCTCAGATAGAGGAGTT+GGG | 0.542802 | tig0026181:+59784 | Msa1427290:CDS |
TCCACTTTCAGCTTCAGTCT+AGG | 0.545468 | tig0026181:-59449 | None:intergenic |
GTACCATCTCCTGGTACACT+TGG | 0.549848 | tig0026181:+61115 | Msa1427290:three_prime_UTR |
TCCGACTTGAAAAGAAGAGA+TGG | 0.552608 | tig0026181:+60108 | Msa1427290:CDS |
CCTTCATCTTAGGTATGAGA+TGG | 0.553344 | tig0026181:+59852 | Msa1427290:CDS |
ACATAGAGAAAAGGTGGAGT+GGG | 0.554622 | tig0026181:+61219 | Msa1427290:three_prime_UTR |
TAACCATGGTTAGGTTAGCA+AGG | 0.555353 | tig0026181:+57744 | Msa1427290:five_prime_UTR |
TTTGTGGAAGCTTAAACCAC+TGG | 0.555485 | tig0026181:+61479 | Msa1427290:three_prime_UTR |
AAGAGGCAGACATAGAGAAA+AGG | 0.556274 | tig0026181:+61210 | Msa1427290:three_prime_UTR |
TTAATAGATCAGTACAATAA+CGG | 0.557119 | tig0026181:+60886 | Msa1427290:CDS |
ATCTAAATAGAACGGATGCT+CGG | 0.559630 | tig0026181:+59689 | Msa1427290:CDS |
TCCTGACAAGCCCAAAGAAG+AGG | 0.560213 | tig0026181:+60993 | Msa1427290:CDS |
TAACGGGTGGCATAGTGTAA+AGG | 0.560749 | tig0026181:-59481 | None:intergenic |
ATTCCAAGACATATTTGATG+TGG | 0.563275 | tig0026181:+59373 | Msa1427290:CDS |
TGAAAGAAACGAAGATCGGA+TGG | 0.564064 | tig0026181:-60397 | None:intergenic |
AATATTATAGCCGATGGAGG+TGG | 0.565451 | tig0026181:-57841 | None:intergenic |
GGTCAGGAAGGAAACACTGT+TGG | 0.565664 | tig0026181:+60372 | Msa1427290:intron |
GACATTTAAATATCTGGCAA+TGG | 0.566411 | tig0026181:-59176 | None:intergenic |
TCCGGCCACCACATTCTCGC+CGG | 0.567955 | tig0026181:+57890 | Msa1427290:five_prime_UTR |
TGAATGAATATTATAGCCGA+TGG | 0.570106 | tig0026181:-57847 | None:intergenic |
GTTGTTGAAACAGGTCAGGA+AGG | 0.574070 | tig0026181:+60360 | Msa1427290:intron |
TCCGGCGAGAATGTGGTGGC+CGG | 0.576218 | tig0026181:-57891 | None:intergenic |
TATCACATCCTTGAGAGATG+AGG | 0.579093 | tig0026181:+59403 | Msa1427290:CDS |
GTAAAAGCAATAACTACAAG+TGG | 0.579123 | tig0026181:+58227 | Msa1427290:CDS |
TTGATGGTTTCGTGCAATGG+AGG | 0.581174 | tig0026181:+58757 | Msa1427290:CDS |
AAGACGGACAAGTCTTTCAA+AGG | 0.582155 | tig0026181:+60239 | Msa1427290:CDS |
GTCAAGAGCCCTTAGTGTAA+GGG | 0.585333 | tig0026181:-60160 | None:intergenic |
CGCAGCTTCTGAATCTCTGG+AGG | 0.585943 | tig0026181:-59730 | None:intergenic |
AGGCAGACATAGAGAAAAGG+TGG | 0.587640 | tig0026181:+61213 | Msa1427290:three_prime_UTR |
AAATATGGCCAAAGTAGTTG+CGG | 0.588468 | tig0026181:+60498 | Msa1427290:CDS |
GGAGACTGCCCTTACACTAA+GGG | 0.590801 | tig0026181:+60152 | Msa1427290:CDS |
ATTCAAATCTACATTGCAGC+CGG | 0.591935 | tig0026181:+60195 | Msa1427290:CDS |
AGATATGTCGGACCAACTAA+CGG | 0.593775 | tig0026181:-59498 | None:intergenic |
ACTTTCAGCTTCAGTCTAGG+AGG | 0.594125 | tig0026181:-59446 | None:intergenic |
TAATCAAGCAAAAGCAGCCG+GGG | 0.595445 | tig0026181:+61261 | Msa1427290:three_prime_UTR |
GTTCTTATAGTAAGATATGT+CGG | 0.596661 | tig0026181:-59510 | None:intergenic |
GGAATCGCATGCTCATCGCA+TGG | 0.597419 | tig0026181:+60945 | Msa1427290:CDS |
GAATCGCATGCTCATCGCAT+GGG | 0.597465 | tig0026181:+60946 | Msa1427290:CDS |
AAGGTGCTCCGGCGAGAATG+TGG | 0.598120 | tig0026181:-57898 | None:intergenic |
TATCCGCACCTCATCTCTCA+AGG | 0.599568 | tig0026181:-59411 | None:intergenic |
GGGTAACCCTAGTAAAAGGT+TGG | 0.602245 | tig0026181:+60966 | Msa1427290:CDS |
AAGGTTGTAGGTATAGGTGT+AGG | 0.604783 | tig0026181:+57763 | Msa1427290:five_prime_UTR |
GACATAGAGAAAAGGTGGAG+TGG | 0.608814 | tig0026181:+61218 | Msa1427290:three_prime_UTR |
GCACTCACCCTGCAATGTCA+GGG | 0.610228 | tig0026181:-61389 | None:intergenic |
CTCTTGGGAGGAAGAACTGG+TGG | 0.610292 | tig0026181:-58520 | None:intergenic |
GCTACTATACAAGAATGTGA+TGG | 0.611987 | tig0026181:-61364 | None:intergenic |
TGGAAGAGCTGACAAGAATG+AGG | 0.612354 | tig0026181:+59923 | Msa1427290:CDS |
CCAAAGAGTGAAGTTAACCA+TGG | 0.612692 | tig0026181:+57730 | Msa1427290:five_prime_UTR |
AGTTGTCCATCTAAATAGAA+CGG | 0.613720 | tig0026181:+59681 | Msa1427290:CDS |
AGGTTGTAACAGTGATGAGG+TGG | 0.616448 | tig0026181:+59903 | Msa1427290:CDS |
TATATGGTGGAGAAAGAAGA+CGG | 0.616742 | tig0026181:+60223 | Msa1427290:CDS |
GTTGTTCAACGAAACGACAC+CGG | 0.622229 | tig0026181:-58135 | None:intergenic |
GTGCTCCGGCGAGAATGTGG+TGG | 0.627301 | tig0026181:-57895 | None:intergenic |
AAACCAAGTGTACCAGGAGA+TGG | 0.627844 | tig0026181:-61118 | None:intergenic |
GTAGCCACCCTGACATTGCA+GGG | 0.630817 | tig0026181:+61382 | Msa1427290:three_prime_UTR |
AAACTATAGAACGAGTTAAG+GGG | 0.632455 | tig0026181:+57693 | Msa1427290:five_prime_UTR |
AAAAGGTACTAACTCTTGGG+AGG | 0.632505 | tig0026181:-58532 | None:intergenic |
GAGCTAATTCAATAAATCTG+TGG | 0.633440 | tig0026181:-61145 | None:intergenic |
CATATCTTACTATAAGAACC+AGG | 0.641279 | tig0026181:+59514 | Msa1427290:CDS |
GGCCAACCCTTAAGAACTCG+AGG | 0.641899 | tig0026181:-58424 | None:intergenic |
TATAGCCGATGGAGGTGGTG+AGG | 0.645162 | tig0026181:-57836 | None:intergenic |
CAACCTTGCTAACCTAACCA+TGG | 0.651567 | tig0026181:-57747 | None:intergenic |
CTCACCCTGCAATGTCAGGG+TGG | 0.653884 | tig0026181:-61386 | None:intergenic |
ATGAATATTATAGCCGATGG+AGG | 0.657327 | tig0026181:-57844 | None:intergenic |
GATGATACGTGCAACTACAA+CGG | 0.662026 | tig0026181:+58348 | Msa1427290:CDS |
TCAAGGTTGTAACAGTGATG+AGG | 0.671497 | tig0026181:+59900 | Msa1427290:CDS |
GAAGTGTGAGAGAAAACGGA+AGG | 0.676251 | tig0026181:-57917 | None:intergenic |
ATTGAATCAAATGAGAGCAG+CGG | 0.677275 | tig0026181:+58780 | Msa1427290:CDS |
AGTTTAAACATCATTGTACA+CGG | 0.681628 | tig0026181:+61412 | Msa1427290:three_prime_UTR |
CATCCTTGAGAGATGAGGTG+CGG | 0.682250 | tig0026181:+59408 | Msa1427290:CDS |
CTGAAGCTGAAAGTGGAACG+TGG | 0.690390 | tig0026181:+59455 | Msa1427290:CDS |
GCAGCCGGTGAAATATATGG+TGG | 0.693718 | tig0026181:+60210 | Msa1427290:CDS |
ATGTCGGACCAACTAACGGG+TGG | 0.696538 | tig0026181:-59494 | None:intergenic |
TAGCTGAACTGTACCTGCGG+TGG | 0.699212 | tig0026181:-60522 | None:intergenic |
TTATTTCTATTCCAACCCAG+AGG | 0.699845 | tig0026181:+61017 | Msa1427290:CDS |
GGTGTCGTTTCGTTGAACAA+CGG | 0.700816 | tig0026181:+58137 | Msa1427290:five_prime_UTR |
AATCAAGCAAAAGCAGCCGG+GGG | 0.715141 | tig0026181:+61262 | Msa1427290:three_prime_UTR |
AACTGTGCAGATATGTGACA+TGG | 0.717484 | tig0026181:+59150 | Msa1427290:intron |
TCCACATGTGTAAAACACGA+AGG | 0.718734 | tig0026181:-58445 | None:intergenic |
TTTATGTCCTCTAACACCCG+AGG | 0.720237 | tig0026181:+60131 | Msa1427290:CDS |
ACAGCTATAGGTGATTTGTG+GGG | 0.725015 | tig0026181:+58400 | Msa1427290:CDS |
TTAAACATCATTGTACACGG+AGG | 0.789433 | tig0026181:+61415 | Msa1427290:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATTAAATCTACATTTA+GGG | + | tig0026181:58174-58193 | Msa1427290:five_prime_UTR | 10.0% |
!! | TTAATAATCATAATTAAACA+AGG | - | tig0026181:58668-58687 | None:intergenic | 10.0% |
!! | TGATTGAAAAAATAAATAAT+TGG | - | tig0026181:59986-60005 | None:intergenic | 10.0% |
!! | CTTTAATTAAATCTACATTT+AGG | + | tig0026181:58173-58192 | Msa1427290:five_prime_UTR | 15.0% |
!! | ACTTAATTAGAAAGTAAAAA+AGG | - | tig0026181:58552-58571 | None:intergenic | 15.0% |
!! | AAATAGCAATAAAACAAATT+AGG | - | tig0026181:58587-58606 | None:intergenic | 15.0% |
!!! | AATTTAGAATTTTGTTTATC+TGG | - | tig0026181:60598-60617 | None:intergenic | 15.0% |
!!! | ATTTGCTTTTATTAAGATAT+TGG | - | tig0026181:60638-60657 | None:intergenic | 15.0% |
!! | TTCATATTCATATACAAATT+TGG | + | tig0026181:61440-61459 | Msa1427290:three_prime_UTR | 15.0% |
!!! | GTTATTTTTTATATTGAGGA+GGG | - | tig0026181:57973-57992 | None:intergenic | 20.0% |
!!! | CATTTGTTTTTAATTAGCAA+AGG | - | tig0026181:59617-59636 | None:intergenic | 20.0% |
!! | CTTTGCTAATTAAAAACAAA+TGG | + | tig0026181:59615-59634 | Msa1427290:intron | 20.0% |
!!! | AATAATTGGACTTTTGAAAT+AGG | - | tig0026181:59972-59991 | None:intergenic | 20.0% |
!!! | ATTTATTTTTTCAATCACTG+TGG | + | tig0026181:59989-60008 | Msa1427290:intron | 20.0% |
!!! | AAATTTCAATTTTTTGTGCT+TGG | + | tig0026181:60045-60064 | Msa1427290:intron | 20.0% |
!!! | CTATAAAGTTTACCAATTTT+GGG | - | tig0026181:60269-60288 | None:intergenic | 20.0% |
!! | AAACTTTATAGCTAAACTAA+AGG | + | tig0026181:60278-60297 | Msa1427290:intron | 20.0% |
!!! | GTTATAGTGTTATTATTAGT+TGG | + | tig0026181:60764-60783 | Msa1427290:intron | 20.0% |
!! | TTAATAGATCAGTACAATAA+CGG | + | tig0026181:60886-60905 | Msa1427290:CDS | 20.0% |
!! | AAATGTGTTTGGAAAAATAA+TGG | + | tig0026181:61082-61101 | Msa1427290:three_prime_UTR | 20.0% |
!! | AGAAAAAAAAATAATACCAG+TGG | - | tig0026181:61498-61517 | None:intergenic | 20.0% |
! | TTAAACTATAGAACGAGTTA+AGG | + | tig0026181:57691-57710 | Msa1427290:five_prime_UTR | 25.0% |
! | TAAACTATAGAACGAGTTAA+GGG | + | tig0026181:57692-57711 | Msa1427290:five_prime_UTR | 25.0% |
!!! | GGTTATTTTTTATATTGAGG+AGG | - | tig0026181:57974-57993 | None:intergenic | 25.0% |
! | ATAGTTCAATTAACAGCTAT+AGG | + | tig0026181:58388-58407 | Msa1427290:CDS | 25.0% |
!!! | TAAAAAAGGTACTAACTCTT+GGG | - | tig0026181:58538-58557 | None:intergenic | 25.0% |
! | TCAGGAGTTTATAAAAACAA+TGG | + | tig0026181:58730-58749 | Msa1427290:intron | 25.0% |
! | CAGGAGTTTATAAAAACAAT+GGG | + | tig0026181:58731-58750 | Msa1427290:intron | 25.0% |
! | TAAATAATCAGAAACGCAAA+CGG | - | tig0026181:59126-59145 | None:intergenic | 25.0% |
!! | AACTTGATAAAACATCCTTT+TGG | + | tig0026181:59215-59234 | Msa1427290:CDS | 25.0% |
!! | ACTTGATAAAACATCCTTTT+GGG | + | tig0026181:59216-59235 | Msa1427290:CDS | 25.0% |
! | AAATAGTCAATGAGATAAGA+GGG | - | tig0026181:59332-59351 | None:intergenic | 25.0% |
! | TAAATAGTCAATGAGATAAG+AGG | - | tig0026181:59333-59352 | None:intergenic | 25.0% |
! | GTTCTTATAGTAAGATATGT+CGG | - | tig0026181:59513-59532 | None:intergenic | 25.0% |
! | CAAAAAATTGAAATTTGAGG+AGG | - | tig0026181:60041-60060 | None:intergenic | 25.0% |
! | GCACAAAAAATTGAAATTTG+AGG | - | tig0026181:60044-60063 | None:intergenic | 25.0% |
!! | GCTATAAAGTTTACCAATTT+TGG | - | tig0026181:60270-60289 | None:intergenic | 25.0% |
!!! | ATTTTGAAAGAAACGAAGAT+CGG | - | tig0026181:60404-60423 | None:intergenic | 25.0% |
!!! | TTAGAATTTTGTTTATCTGG+AGG | - | tig0026181:60595-60614 | None:intergenic | 25.0% |
!!! | GAAAAGTTTTTTCCTTATAC+CGG | + | tig0026181:60679-60698 | Msa1427290:intron | 25.0% |
! | ATGTGAATACAAAATAGTTC+CGG | - | tig0026181:60701-60720 | None:intergenic | 25.0% |
! | ATTGCTTATACAGATATCTT+GGG | + | tig0026181:60821-60840 | Msa1427290:intron | 25.0% |
! | TAGAAATAATCCTCTTCTTT+GGG | - | tig0026181:61006-61025 | None:intergenic | 25.0% |
! | ATAGAAATAATCCTCTTCTT+TGG | - | tig0026181:61007-61026 | None:intergenic | 25.0% |
!!! | CTTTTTTGTATCAAGAAAAG+AGG | + | tig0026181:61193-61212 | Msa1427290:three_prime_UTR | 25.0% |
!! | TAAAAATATAAAGTATCCCC+CGG | - | tig0026181:61281-61300 | None:intergenic | 25.0% |
! | AGTTTAAACATCATTGTACA+CGG | + | tig0026181:61412-61431 | Msa1427290:three_prime_UTR | 25.0% |
! | CATATACAAATTTGGATTAC+TGG | + | tig0026181:61448-61467 | Msa1427290:three_prime_UTR | 25.0% |
AAACTATAGAACGAGTTAAG+GGG | + | tig0026181:57693-57712 | Msa1427290:five_prime_UTR | 30.0% | |
!! | TAACTTCACTCTTTGGAATT+TGG | - | tig0026181:57726-57745 | None:intergenic | 30.0% |
TGAATGAATATTATAGCCGA+TGG | - | tig0026181:57850-57869 | None:intergenic | 30.0% | |
TGTTGAATTTGAGGAAATGA+AGG | - | tig0026181:57944-57963 | None:intergenic | 30.0% | |
!!! | CGCGGTTATTTTTTATATTG+AGG | - | tig0026181:57977-57996 | None:intergenic | 30.0% |
CAATATAAAAAATAACCGCG+CGG | + | tig0026181:57977-57996 | Msa1427290:five_prime_UTR | 30.0% | |
! | CGGTTAATTTTTATTCGTTG+CGG | + | tig0026181:57997-58016 | Msa1427290:five_prime_UTR | 30.0% |
!! | ATTAGTTGATAACTTCGATC+CGG | + | tig0026181:58116-58135 | Msa1427290:five_prime_UTR | 30.0% |
!! | TAGTTATTGCTTTTACTCTC+TGG | - | tig0026181:58223-58242 | None:intergenic | 30.0% |
GTAAAAGCAATAACTACAAG+TGG | + | tig0026181:58227-58246 | Msa1427290:CDS | 30.0% | |
!! | GTAAAAAAGGTACTAACTCT+TGG | - | tig0026181:58539-58558 | None:intergenic | 30.0% |
TAAAAACAATGGGTACTTGA+TGG | + | tig0026181:58741-58760 | Msa1427290:CDS | 30.0% | |
!! | TGATTTTAGTCCTGAAATGT+AGG | + | tig0026181:58844-58863 | Msa1427290:intron | 30.0% |
!! | GATTTTAGTCCTGAAATGTA+GGG | + | tig0026181:58845-58864 | Msa1427290:intron | 30.0% |
!! | ATTTTAGTCCTGAAATGTAG+GGG | + | tig0026181:58846-58865 | Msa1427290:intron | 30.0% |
TTATATAACCCCTACATTTC+AGG | - | tig0026181:58857-58876 | None:intergenic | 30.0% | |
ATTTAGTCCTCAAGATTGTA+GGG | - | tig0026181:59025-59044 | None:intergenic | 30.0% | |
TATTTAGTCCTCAAGATTGT+AGG | - | tig0026181:59026-59045 | None:intergenic | 30.0% | |
GACATTTAAATATCTGGCAA+TGG | - | tig0026181:59179-59198 | None:intergenic | 30.0% | |
AAGCGTGACATTTAAATATC+TGG | - | tig0026181:59185-59204 | None:intergenic | 30.0% | |
! | AAGGATGTTTTATCAAGTTC+AGG | - | tig0026181:59214-59233 | None:intergenic | 30.0% |
CATTTGTCGATAAAACAAAC+AGG | - | tig0026181:59271-59290 | None:intergenic | 30.0% | |
AAATATGTCTTGGAATTCAC+TGG | - | tig0026181:59369-59388 | None:intergenic | 30.0% | |
ATTCCAAGACATATTTGATG+TGG | + | tig0026181:59373-59392 | Msa1427290:CDS | 30.0% | |
CATATCTTACTATAAGAACC+AGG | + | tig0026181:59514-59533 | Msa1427290:CDS | 30.0% | |
! | ACTTTGTGCTTTTGTATCAA+GGG | - | tig0026181:59664-59683 | None:intergenic | 30.0% |
! | AACTTTGTGCTTTTGTATCA+AGG | - | tig0026181:59665-59684 | None:intergenic | 30.0% |
AGTTGTCCATCTAAATAGAA+CGG | + | tig0026181:59681-59700 | Msa1427290:CDS | 30.0% | |
! | ATCAAGCTTCTAAGGAAAAA+CGG | + | tig0026181:59817-59836 | Msa1427290:CDS | 30.0% |
! | ATTATTTTCTCTTTCCACCA+AGG | - | tig0026181:60084-60103 | None:intergenic | 30.0% |
TCAAAATCATTCATCTCAGA+TGG | + | tig0026181:60417-60436 | Msa1427290:CDS | 30.0% | |
! | ATTTTTGTTCCCACATATGA+TGG | + | tig0026181:60475-60494 | Msa1427290:CDS | 30.0% |
AGTTCAGCTAGTAAAATTTG+TGG | + | tig0026181:60535-60554 | Msa1427290:intron | 30.0% | |
TTGTTTATCTGGAGGTTTAA+TGG | - | tig0026181:60587-60606 | None:intergenic | 30.0% | |
TACAAAATAGTTCCGGTATA+AGG | - | tig0026181:60694-60713 | None:intergenic | 30.0% | |
ATATCTGTATAAGCAATGGA+AGG | - | tig0026181:60818-60837 | None:intergenic | 30.0% | |
CAAGATATCTGTATAAGCAA+TGG | - | tig0026181:60822-60841 | None:intergenic | 30.0% | |
CATTGCTTATACAGATATCT+TGG | + | tig0026181:60820-60839 | Msa1427290:intron | 30.0% | |
! | GAATTACCAACCTTTTACTA+GGG | - | tig0026181:60975-60994 | None:intergenic | 30.0% |
GAGCTAATTCAATAAATCTG+TGG | - | tig0026181:61148-61167 | None:intergenic | 30.0% | |
!! | TTCAGTTTTAACAAACACGA+CGG | + | tig0026181:61170-61189 | Msa1427290:three_prime_UTR | 30.0% |
! | CTTGATTAGAATTTTTGCGA+AGG | - | tig0026181:61249-61268 | None:intergenic | 30.0% |
TGAAAGAAAAACGAATGTGA+TGG | - | tig0026181:61330-61349 | None:intergenic | 30.0% | |
ATGAATATTATAGCCGATGG+AGG | - | tig0026181:57847-57866 | None:intergenic | 35.0% | |
GGGAAATGTTGTTGAATTTG+AGG | - | tig0026181:57953-57972 | None:intergenic | 35.0% | |
ACGAATAAAAATTAACCGCG+CGG | - | tig0026181:57995-58014 | None:intergenic | 35.0% | |
ACTGTATTTCTTGTCTGCAT+TGG | + | tig0026181:58067-58086 | Msa1427290:five_prime_UTR | 35.0% | |
TAACTACAAGTGGCAAGATT+TGG | + | tig0026181:58237-58256 | Msa1427290:CDS | 35.0% | |
AACTACAAGTGGCAAGATTT+GGG | + | tig0026181:58238-58257 | Msa1427290:CDS | 35.0% | |
!! | ACAAAAAGAGAGACTAGCTT+CGG | + | tig0026181:58279-58298 | Msa1427290:CDS | 35.0% |
GAAGAGGTAGAATGAAACTA+TGG | + | tig0026181:58326-58345 | Msa1427290:CDS | 35.0% | |
TAACAGCTATAGGTGATTTG+TGG | + | tig0026181:58398-58417 | Msa1427290:CDS | 35.0% | |
! | AACAGCTATAGGTGATTTGT+GGG | + | tig0026181:58399-58418 | Msa1427290:CDS | 35.0% |
TGTTACGTTGTTGTGATATC+AGG | + | tig0026181:58712-58731 | Msa1427290:intron | 35.0% | |
ATTGAATCAAATGAGAGCAG+CGG | + | tig0026181:58780-58799 | Msa1427290:CDS | 35.0% | |
TAGTTGCACAATGACACAAA+CGG | - | tig0026181:59085-59104 | None:intergenic | 35.0% | |
CAACTCAAACGACATTGATA+AGG | - | tig0026181:59298-59317 | None:intergenic | 35.0% | |
!! | ATCAATGTCGTTTGAGTTGA+AGG | + | tig0026181:59299-59318 | Msa1427290:intron | 35.0% |
GATCCACATCAAATATGTCT+TGG | - | tig0026181:59379-59398 | None:intergenic | 35.0% | |
GTGGATACTAAAAACTAACC+TGG | - | tig0026181:59535-59554 | None:intergenic | 35.0% | |
TGTGAAAGATACGATCACAT+TGG | - | tig0026181:59561-59580 | None:intergenic | 35.0% | |
ATCTAAATAGAACGGATGCT+CGG | + | tig0026181:59689-59708 | Msa1427290:CDS | 35.0% | |
! | ATGGACATGTTAGCATTTTC+TGG | + | tig0026181:59871-59890 | Msa1427290:CDS | 35.0% |
!!! | ACCATCTCTTCTTTTCAAGT+CGG | - | tig0026181:60112-60131 | None:intergenic | 35.0% |
ATTCAAATCTACATTGCAGC+CGG | + | tig0026181:60195-60214 | Msa1427290:CDS | 35.0% | |
TTCTCCACCATATATTTCAC+CGG | - | tig0026181:60217-60236 | None:intergenic | 35.0% | |
! | TATATGGTGGAGAAAGAAGA+CGG | + | tig0026181:60223-60242 | Msa1427290:CDS | 35.0% |
!! | TTCAAAGGAGTACCCAAAAT+TGG | + | tig0026181:60254-60273 | Msa1427290:CDS | 35.0% |
AAGTGGAAAGGAAAACAGTA+AGG | - | tig0026181:60339-60358 | None:intergenic | 35.0% | |
GTTTCAACAACAAAGTGGAA+AGG | - | tig0026181:60351-60370 | None:intergenic | 35.0% | |
!! | TTCCACTTTGTTGTTGAAAC+AGG | + | tig0026181:60351-60370 | Msa1427290:intron | 35.0% |
! | TCCCACATATGATGGAAATA+TGG | + | tig0026181:60483-60502 | Msa1427290:CDS | 35.0% |
GCCATATTTCCATCATATGT+GGG | - | tig0026181:60487-60506 | None:intergenic | 35.0% | |
AAATATGGCCAAAGTAGTTG+CGG | + | tig0026181:60498-60517 | Msa1427290:CDS | 35.0% | |
! | GTTCAAGAAGACGATTTTAC+TGG | + | tig0026181:60843-60862 | Msa1427290:CDS | 35.0% |
! | GGAATTACCAACCTTTTACT+AGG | - | tig0026181:60976-60995 | None:intergenic | 35.0% |
!! | TTATTTCTATTCCAACCCAG+AGG | + | tig0026181:61017-61036 | Msa1427290:CDS | 35.0% |
!! | ATGGTTCTAAACATTCCTCT+GGG | - | tig0026181:61035-61054 | None:intergenic | 35.0% |
CTACTCAGCATATCATTTGA+TGG | - | tig0026181:61054-61073 | None:intergenic | 35.0% | |
! | ATTTTACATGTACCATCTCC+TGG | + | tig0026181:61106-61125 | Msa1427290:three_prime_UTR | 35.0% |
GCTACTATACAAGAATGTGA+TGG | - | tig0026181:61367-61386 | None:intergenic | 35.0% | |
TTAAACATCATTGTACACGG+AGG | + | tig0026181:61415-61434 | Msa1427290:three_prime_UTR | 35.0% | |
CCATGGTTAACTTCACTCTT+TGG | - | tig0026181:57733-57752 | None:intergenic | 40.0% | |
CCAAAGAGTGAAGTTAACCA+TGG | + | tig0026181:57730-57749 | Msa1427290:five_prime_UTR | 40.0% | |
GAGTGAAGTTAACCATGGTT+AGG | + | tig0026181:57735-57754 | Msa1427290:five_prime_UTR | 40.0% | |
TAACCATGGTTAGGTTAGCA+AGG | + | tig0026181:57744-57763 | Msa1427290:five_prime_UTR | 40.0% | |
GTTAGCAAGGTTGTAGGTAT+AGG | + | tig0026181:57757-57776 | Msa1427290:five_prime_UTR | 40.0% | |
AAGGTTGTAGGTATAGGTGT+AGG | + | tig0026181:57763-57782 | Msa1427290:five_prime_UTR | 40.0% | |
AATATTATAGCCGATGGAGG+TGG | - | tig0026181:57844-57863 | None:intergenic | 40.0% | |
AGGTGAAGTGTGAGAGAAAA+CGG | - | tig0026181:57924-57943 | None:intergenic | 40.0% | |
!! | CAAAAAGAGAGACTAGCTTC+GGG | + | tig0026181:58280-58299 | Msa1427290:CDS | 40.0% |
GATGATACGTGCAACTACAA+CGG | + | tig0026181:58348-58367 | Msa1427290:CDS | 40.0% | |
CAACTACAACGGTGATATTG+TGG | + | tig0026181:58359-58378 | Msa1427290:CDS | 40.0% | |
! | ACAGCTATAGGTGATTTGTG+GGG | + | tig0026181:58400-58419 | Msa1427290:CDS | 40.0% |
TCCACATGTGTAAAACACGA+AGG | - | tig0026181:58448-58467 | None:intergenic | 40.0% | |
!! | TGCTTCAAATTCTAGAGCGT+TGG | + | tig0026181:58474-58493 | Msa1427290:CDS | 40.0% |
!! | AAAAGGTACTAACTCTTGGG+AGG | - | tig0026181:58535-58554 | None:intergenic | 40.0% |
! | TACTTGATGGTTTCGTGCAA+TGG | + | tig0026181:58754-58773 | Msa1427290:CDS | 40.0% |
AAAATCCTCCTTGATCCTGT+TGG | + | tig0026181:58892-58911 | Msa1427290:intron | 40.0% | |
!! | TCTCAATGGACTAACTTGAC+CGG | - | tig0026181:58922-58941 | None:intergenic | 40.0% |
!! | CCACTTTGAGATGATCTCAA+TGG | - | tig0026181:58936-58955 | None:intergenic | 40.0% |
CCATTGAGATCATCTCAAAG+TGG | + | tig0026181:58933-58952 | Msa1427290:intron | 40.0% | |
AGTTGCACAATGACACAAAC+GGG | - | tig0026181:59084-59103 | None:intergenic | 40.0% | |
AACTGTGCAGATATGTGACA+TGG | + | tig0026181:59150-59169 | Msa1427290:intron | 40.0% | |
TATCACATCCTTGAGAGATG+AGG | + | tig0026181:59403-59422 | Msa1427290:CDS | 40.0% | |
AGATATGTCGGACCAACTAA+CGG | - | tig0026181:59501-59520 | None:intergenic | 40.0% | |
GAGCATCCGTTCTATTTAGA+TGG | - | tig0026181:59690-59709 | None:intergenic | 40.0% | |
! | CTGCGATGCAGAGTTAATTT+TGG | + | tig0026181:59748-59767 | Msa1427290:CDS | 40.0% |
GAGATTCACTTCTCAGATAG+AGG | + | tig0026181:59777-59796 | Msa1427290:CDS | 40.0% | |
ACTTCTCAGATAGAGGAGTT+GGG | + | tig0026181:59784-59803 | Msa1427290:CDS | 40.0% | |
GAAAGGTGATCAAGCTTCTA+AGG | + | tig0026181:59809-59828 | Msa1427290:CDS | 40.0% | |
AAGGAAAAACGGTCCATTTC+TGG | + | tig0026181:59828-59847 | Msa1427290:CDS | 40.0% | |
CTAAGATGAAGGACCAGAAA+TGG | - | tig0026181:59844-59863 | None:intergenic | 40.0% | |
!! | CATTTCTGGTCCTTCATCTT+AGG | + | tig0026181:59842-59861 | Msa1427290:CDS | 40.0% |
CCATCTCATACCTAAGATGA+AGG | - | tig0026181:59855-59874 | None:intergenic | 40.0% | |
CCTTCATCTTAGGTATGAGA+TGG | + | tig0026181:59852-59871 | Msa1427290:CDS | 40.0% | |
TCAAGGTTGTAACAGTGATG+AGG | + | tig0026181:59900-59919 | Msa1427290:CDS | 40.0% | |
TTTCTCTTTCCACCAAGGAT+AGG | - | tig0026181:60079-60098 | None:intergenic | 40.0% | |
! | TCCGACTTGAAAAGAAGAGA+TGG | + | tig0026181:60108-60127 | Msa1427290:CDS | 40.0% |
ATTGCAGCCGGTGAAATATA+TGG | + | tig0026181:60207-60226 | Msa1427290:CDS | 40.0% | |
AAGACGGACAAGTCTTTCAA+AGG | + | tig0026181:60239-60258 | Msa1427290:CDS | 40.0% | |
TAGCTAAACTAAAGGCAGCA+TGG | + | tig0026181:60286-60305 | Msa1427290:intron | 40.0% | |
GACCTGTTTCAACAACAAAG+TGG | - | tig0026181:60356-60375 | None:intergenic | 40.0% | |
!! | CTTTGTTGTTGAAACAGGTC+AGG | + | tig0026181:60356-60375 | Msa1427290:intron | 40.0% |
TGAAAGAAACGAAGATCGGA+TGG | - | tig0026181:60400-60419 | None:intergenic | 40.0% | |
GGCCATATTTCCATCATATG+TGG | - | tig0026181:60488-60507 | None:intergenic | 40.0% | |
AATATGGCCAAAGTAGTTGC+GGG | + | tig0026181:60499-60518 | Msa1427290:CDS | 40.0% | |
TGGAAGGTTGTCAATTCACT+TGG | - | tig0026181:60802-60821 | None:intergenic | 40.0% | |
CCTTCACAGCTGAAGAAAAT+TGG | - | tig0026181:60927-60946 | None:intergenic | 40.0% | |
! | CCAATTTTCTTCAGCTGTGA+AGG | + | tig0026181:60924-60943 | Msa1427290:CDS | 40.0% |
TTCTAAACATTCCTCTGGGT+TGG | - | tig0026181:61031-61050 | None:intergenic | 40.0% | |
!! | GATGGTTCTAAACATTCCTC+TGG | - | tig0026181:61036-61055 | None:intergenic | 40.0% |
TAGCACGTGACAAATGTGTT+TGG | + | tig0026181:61071-61090 | Msa1427290:exon | 40.0% | |
AAGAGGCAGACATAGAGAAA+AGG | + | tig0026181:61210-61229 | Msa1427290:three_prime_UTR | 40.0% | |
ACATAGAGAAAAGGTGGAGT+GGG | + | tig0026181:61219-61238 | Msa1427290:three_prime_UTR | 40.0% | |
TCTAATCAAGCAAAAGCAGC+CGG | + | tig0026181:61259-61278 | Msa1427290:three_prime_UTR | 40.0% | |
ATTACTGGATCTGCAGTTTG+TGG | + | tig0026181:61463-61482 | Msa1427290:three_prime_UTR | 40.0% | |
TTTGTGGAAGCTTAAACCAC+TGG | + | tig0026181:61479-61498 | Msa1427290:three_prime_UTR | 40.0% | |
CAACCTTGCTAACCTAACCA+TGG | - | tig0026181:57750-57769 | None:intergenic | 45.0% | |
GGTTAGGTTAGCAAGGTTGT+AGG | + | tig0026181:57751-57770 | Msa1427290:five_prime_UTR | 45.0% | |
GAAGTGTGAGAGAAAACGGA+AGG | - | tig0026181:57920-57939 | None:intergenic | 45.0% | |
GTTGTTCAACGAAACGACAC+CGG | - | tig0026181:58138-58157 | None:intergenic | 45.0% | |
!! | GGTGTCGTTTCGTTGAACAA+CGG | + | tig0026181:58137-58156 | Msa1427290:five_prime_UTR | 45.0% |
ACAAGTGGCAAGATTTGGGT+TGG | + | tig0026181:58242-58261 | Msa1427290:CDS | 45.0% | |
!! | TGGCAAGATTTGGGTTGGAT+GGG | + | tig0026181:58247-58266 | Msa1427290:CDS | 45.0% |
!! | TTTGGGTTGGATGGGTTTGA+AGG | + | tig0026181:58255-58274 | Msa1427290:CDS | 45.0% |
! | GCCTTCGTGTTTTACACATG+TGG | + | tig0026181:58444-58463 | Msa1427290:CDS | 45.0% |
TAACTCTTGGGAGGAAGAAC+TGG | - | tig0026181:58526-58545 | None:intergenic | 45.0% | |
! | TTGATGGTTTCGTGCAATGG+AGG | + | tig0026181:58757-58776 | Msa1427290:CDS | 45.0% |
GGGTCAGACAATTCAGTATC+TGG | - | tig0026181:59005-59024 | None:intergenic | 45.0% | |
TGTCTGACCCTACAATCTTG+AGG | + | tig0026181:59015-59034 | Msa1427290:intron | 45.0% | |
GTTGCACAATGACACAAACG+GGG | - | tig0026181:59083-59102 | None:intergenic | 45.0% | |
AACGCAAACGGAAACAGTAC+AGG | - | tig0026181:59114-59133 | None:intergenic | 45.0% | |
ATTGAGTGAGAGACTCACCT+AGG | - | tig0026181:59247-59266 | None:intergenic | 45.0% | |
ACTTTCAGCTTCAGTCTAGG+AGG | - | tig0026181:59449-59468 | None:intergenic | 45.0% | |
TCCTAGACTGAAGCTGAAAG+TGG | + | tig0026181:59448-59467 | Msa1427290:CDS | 45.0% | |
TCCACTTTCAGCTTCAGTCT+AGG | - | tig0026181:59452-59471 | None:intergenic | 45.0% | |
! | TAACGGGTGGCATAGTGTAA+AGG | - | tig0026181:59484-59503 | None:intergenic | 45.0% |
GATATGTCGGACCAACTAAC+GGG | - | tig0026181:59500-59519 | None:intergenic | 45.0% | |
!! | GATACGATCACATTGGCTTG+TGG | - | tig0026181:59554-59573 | None:intergenic | 45.0% |
CACTTCTCAGATAGAGGAGT+TGG | + | tig0026181:59783-59802 | Msa1427290:CDS | 45.0% | |
!!! | GCATTTTCTGGCTGTACTCA+AGG | + | tig0026181:59883-59902 | Msa1427290:CDS | 45.0% |
AGGTTGTAACAGTGATGAGG+TGG | + | tig0026181:59903-59922 | Msa1427290:CDS | 45.0% | |
TGGAAGAGCTGACAAGAATG+AGG | + | tig0026181:59923-59942 | Msa1427290:CDS | 45.0% | |
TTGGCAGATATGCCTATCCT+TGG | + | tig0026181:60064-60083 | Msa1427290:intron | 45.0% | |
TTTATGTCCTCTAACACCCG+AGG | + | tig0026181:60131-60150 | Msa1427290:CDS | 45.0% | |
GTCAAGAGCCCTTAGTGTAA+GGG | - | tig0026181:60163-60182 | None:intergenic | 45.0% | |
TGTCAAGAGCCCTTAGTGTA+AGG | - | tig0026181:60164-60183 | None:intergenic | 45.0% | |
GTTGTTGAAACAGGTCAGGA+AGG | + | tig0026181:60360-60379 | Msa1427290:intron | 45.0% | |
TTCATCTCAGATGGCAGCAT+TGG | + | tig0026181:60426-60445 | Msa1427290:CDS | 45.0% | |
TACTAGCTGAACTGTACCTG+CGG | - | tig0026181:60528-60547 | None:intergenic | 45.0% | |
ACAATAACGGTGCACTGAAC+TGG | + | tig0026181:60899-60918 | Msa1427290:CDS | 45.0% | |
CAATAACGGTGCACTGAACT+GGG | + | tig0026181:60900-60919 | Msa1427290:CDS | 45.0% | |
GCATGGGTAACCCTAGTAAA+AGG | + | tig0026181:60962-60981 | Msa1427290:CDS | 45.0% | |
GGGTAACCCTAGTAAAAGGT+TGG | + | tig0026181:60966-60985 | Msa1427290:CDS | 45.0% | |
AAACCAAGTGTACCAGGAGA+TGG | - | tig0026181:61121-61140 | None:intergenic | 45.0% | |
GGTAGAAAACCAAGTGTACC+AGG | - | tig0026181:61127-61146 | None:intergenic | 45.0% | |
AGGCAGACATAGAGAAAAGG+TGG | + | tig0026181:61213-61232 | Msa1427290:three_prime_UTR | 45.0% | |
GACATAGAGAAAAGGTGGAG+TGG | + | tig0026181:61218-61237 | Msa1427290:three_prime_UTR | 45.0% | |
CTAATCAAGCAAAAGCAGCC+GGG | + | tig0026181:61260-61279 | Msa1427290:three_prime_UTR | 45.0% | |
TAATCAAGCAAAAGCAGCCG+GGG | + | tig0026181:61261-61280 | Msa1427290:three_prime_UTR | 45.0% | |
TCTTTCCTCACCACCTCCAT+CGG | + | tig0026181:57831-57850 | Msa1427290:five_prime_UTR | 50.0% | |
CTTCTTCCTTCTTCGCTCTC+CGG | + | tig0026181:57872-57891 | Msa1427290:five_prime_UTR | 50.0% | |
!! | AGAGAAAACGGAAGGTGCTC+CGG | - | tig0026181:57912-57931 | None:intergenic | 50.0% |
!! | GTGGCAAGATTTGGGTTGGA+TGG | + | tig0026181:58246-58265 | Msa1427290:CDS | 50.0% |
!! | AGAGAGACTAGCTTCGGGTT+CGG | + | tig0026181:58285-58304 | Msa1427290:CDS | 50.0% |
TGGGGTCCTCGAGTTCTTAA+GGG | + | tig0026181:58418-58437 | Msa1427290:CDS | 50.0% | |
GTCCTCGAGTTCTTAAGGGT+TGG | + | tig0026181:58422-58441 | Msa1427290:CDS | 50.0% | |
TCCTCCTTGATCCTGTTGGT+AGG | + | tig0026181:58896-58915 | Msa1427290:intron | 50.0% | |
! | CATCCTTTTGGGCTGATCCT+AGG | + | tig0026181:59227-59246 | Msa1427290:CDS | 50.0% |
TCACCTAGGATCAGCCCAAA+AGG | - | tig0026181:59233-59252 | None:intergenic | 50.0% | |
CATCCTTGAGAGATGAGGTG+CGG | + | tig0026181:59408-59427 | Msa1427290:CDS | 50.0% | |
TATCCGCACCTCATCTCTCA+AGG | - | tig0026181:59414-59433 | None:intergenic | 50.0% | |
CTGAAGCTGAAAGTGGAACG+TGG | + | tig0026181:59455-59474 | Msa1427290:CDS | 50.0% | |
ACACTATGCCACCCGTTAGT+TGG | + | tig0026181:59486-59505 | Msa1427290:CDS | 50.0% | |
AAATAGAACGGATGCTCGGC+TGG | + | tig0026181:59693-59712 | Msa1427290:CDS | 50.0% | |
! | GCTTCTGAATCTCTGGAGGT+TGG | - | tig0026181:59729-59748 | None:intergenic | 50.0% |
CATCGCAGCTTCTGAATCTC+TGG | - | tig0026181:59736-59755 | None:intergenic | 50.0% | |
GATAGAGGAGTTGGGCAGAA+AGG | + | tig0026181:59792-59811 | Msa1427290:CDS | 50.0% | |
GCAGATATGCCTATCCTTGG+TGG | + | tig0026181:60067-60086 | Msa1427290:intron | 50.0% | |
TAGTGTAAGGGCAGTCTCCT+CGG | - | tig0026181:60151-60170 | None:intergenic | 50.0% | |
AGGAGACTGCCCTTACACTA+AGG | + | tig0026181:60151-60170 | Msa1427290:CDS | 50.0% | |
GGAGACTGCCCTTACACTAA+GGG | + | tig0026181:60152-60171 | Msa1427290:CDS | 50.0% | |
GCAGCCGGTGAAATATATGG+TGG | + | tig0026181:60210-60229 | Msa1427290:CDS | 50.0% | |
GGTCAGGAAGGAAACACTGT+TGG | + | tig0026181:60372-60391 | Msa1427290:intron | 50.0% | |
GAATCGCATGCTCATCGCAT+GGG | + | tig0026181:60946-60965 | Msa1427290:CDS | 50.0% | |
TCCTGACAAGCCCAAAGAAG+AGG | + | tig0026181:60993-61012 | Msa1427290:CDS | 50.0% | |
TCCTCTTCTTTGGGCTTGTC+AGG | - | tig0026181:60997-61016 | None:intergenic | 50.0% | |
GTACCATCTCCTGGTACACT+TGG | + | tig0026181:61115-61134 | Msa1427290:three_prime_UTR | 50.0% | |
AATCAAGCAAAAGCAGCCGG+GGG | + | tig0026181:61262-61281 | Msa1427290:three_prime_UTR | 50.0% | |
TATAGCCGATGGAGGTGGTG+AGG | - | tig0026181:57839-57858 | None:intergenic | 55.0% | |
!! | GAGAGACTAGCTTCGGGTTC+GGG | + | tig0026181:58286-58305 | Msa1427290:CDS | 55.0% |
! | TTCGGGTTCGGGTTCAGGTT+CGG | + | tig0026181:58297-58316 | Msa1427290:CDS | 55.0% |
! | TCAGGTTCGGGTTCAGGAAG+AGG | + | tig0026181:58310-58329 | Msa1427290:CDS | 55.0% |
GTGGGGTCCTCGAGTTCTTA+AGG | + | tig0026181:58417-58436 | Msa1427290:CDS | 55.0% | |
GGCCAACCCTTAAGAACTCG+AGG | - | tig0026181:58427-58446 | None:intergenic | 55.0% | |
CTCTTGGGAGGAAGAACTGG+TGG | - | tig0026181:58523-58542 | None:intergenic | 55.0% | |
CAAATGAGAGCAGCGGTGAG+TGG | + | tig0026181:58787-58806 | Msa1427290:intron | 55.0% | |
! | GGTGAGTGGTTTGCGCAATG+TGG | + | tig0026181:58801-58820 | Msa1427290:intron | 55.0% |
GCCTACCAACAGGATCAAGG+AGG | - | tig0026181:58900-58919 | None:intergenic | 55.0% | |
! | CCTTGATCCTGTTGGTAGGC+CGG | + | tig0026181:58900-58919 | Msa1427290:intron | 55.0% |
AACTTGACCGGCCTACCAAC+AGG | - | tig0026181:58910-58929 | None:intergenic | 55.0% | |
ATGTCGGACCAACTAACGGG+TGG | - | tig0026181:59497-59516 | None:intergenic | 55.0% | |
! | GATGCTCGGCTGGCCAATAA+CGG | + | tig0026181:59703-59722 | Msa1427290:CDS | 55.0% |
! | CTCTGGAGGTTGGCCGTTAT+TGG | - | tig0026181:59719-59738 | None:intergenic | 55.0% |
CGCAGCTTCTGAATCTCTGG+AGG | - | tig0026181:59733-59752 | None:intergenic | 55.0% | |
AGTGTAAGGGCAGTCTCCTC+GGG | - | tig0026181:60150-60169 | None:intergenic | 55.0% | |
TAGCTGAACTGTACCTGCGG+TGG | - | tig0026181:60525-60544 | None:intergenic | 55.0% | |
GGAATCGCATGCTCATCGCA+TGG | + | tig0026181:60945-60964 | Msa1427290:CDS | 55.0% | |
AGTAGCCACCCTGACATTGC+AGG | + | tig0026181:61381-61400 | Msa1427290:three_prime_UTR | 55.0% | |
GTAGCCACCCTGACATTGCA+GGG | + | tig0026181:61382-61401 | Msa1427290:three_prime_UTR | 55.0% | |
GCACTCACCCTGCAATGTCA+GGG | - | tig0026181:61392-61411 | None:intergenic | 55.0% | |
TGCACTCACCCTGCAATGTC+AGG | - | tig0026181:61393-61412 | None:intergenic | 55.0% | |
! | AAGGTGCTCCGGCGAGAATG+TGG | - | tig0026181:57901-57920 | None:intergenic | 60.0% |
! | CTAGCTTCGGGTTCGGGTTC+AGG | + | tig0026181:58292-58311 | Msa1427290:CDS | 60.0% |
! | TCGGGTTCGGGTTCAGGTTC+GGG | + | tig0026181:58298-58317 | Msa1427290:CDS | 60.0% |
! | TCGGGTTCAGGTTCGGGTTC+AGG | + | tig0026181:58304-58323 | Msa1427290:CDS | 60.0% |
CCGGCCTACCAACAGGATCA+AGG | - | tig0026181:58903-58922 | None:intergenic | 60.0% | |
GCAGTCTCCTCGGGTGTTAG+AGG | - | tig0026181:60141-60160 | None:intergenic | 60.0% | |
CTCACCCTGCAATGTCAGGG+TGG | - | tig0026181:61389-61408 | None:intergenic | 60.0% | |
TGGTGGCCGGAGAGCGAAGA+AGG | - | tig0026181:57881-57900 | None:intergenic | 65.0% | |
TCCGGCCACCACATTCTCGC+CGG | + | tig0026181:57890-57909 | Msa1427290:five_prime_UTR | 65.0% | |
TCCGGCGAGAATGTGGTGGC+CGG | - | tig0026181:57894-57913 | None:intergenic | 65.0% | |
GTGCTCCGGCGAGAATGTGG+TGG | - | tig0026181:57898-57917 | None:intergenic | 65.0% | |
GCGGTGGCCCGCAACTACTT+TGG | - | tig0026181:60509-60528 | None:intergenic | 65.0% | |
AAGTAGTTGCGGGCCACCGC+AGG | + | tig0026181:60509-60528 | Msa1427290:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0026181 | gene | 57678 | 61540 | 57678 | ID=Msa1427290;Name=Msa1427290 |
tig0026181 | mRNA | 57678 | 61540 | 57678 | ID=Msa1427290-mRNA-1;Parent=Msa1427290;Name=Msa1427290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=533|1|1|1|1|1|8|460|517 |
tig0026181 | exon | 57678 | 58541 | 57678 | ID=Msa1427290-mRNA-1:exon:5351;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 58734 | 58801 | 58734 | ID=Msa1427290-mRNA-1:exon:5352;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 59160 | 59248 | 59160 | ID=Msa1427290-mRNA-1:exon:5353;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 59370 | 59535 | 59370 | ID=Msa1427290-mRNA-1:exon:5354;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 59655 | 59944 | 59655 | ID=Msa1427290-mRNA-1:exon:5355;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 60071 | 60275 | 60071 | ID=Msa1427290-mRNA-1:exon:5356;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 60373 | 60530 | 60373 | ID=Msa1427290-mRNA-1:exon:5357;Parent=Msa1427290-mRNA-1 |
tig0026181 | exon | 60834 | 61540 | 60834 | ID=Msa1427290-mRNA-1:exon:5358;Parent=Msa1427290-mRNA-1 |
tig0026181 | five_prime_UTR | 57678 | 58210 | 57678 | ID=Msa1427290-mRNA-1:five_prime_utr;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 58211 | 58541 | 58211 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 58734 | 58801 | 58734 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 59160 | 59248 | 59160 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 59370 | 59535 | 59370 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 59655 | 59944 | 59655 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 60071 | 60275 | 60071 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 60373 | 60530 | 60373 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | CDS | 60834 | 61080 | 60834 | ID=Msa1427290-mRNA-1:cds;Parent=Msa1427290-mRNA-1 |
tig0026181 | three_prime_UTR | 61081 | 61540 | 61081 | ID=Msa1427290-mRNA-1:three_prime_utr;Parent=Msa1427290-mRNA-1 |
Gene Sequence |
Protein sequence |