Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429260 | XP_013461078.1 | 96.893 | 354 | 11 | 0 | 7 | 360 | 1 | 354 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429260 | sp|Q6PAF4|NSE1_XENLA | 26.712 | 292 | 178 | 11 | 7 | 292 | 1 | 262 | 1.39e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429260 | A0A072UZW9 | 96.893 | 354 | 11 | 0 | 7 | 360 | 1 | 354 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0419810 | Msa1429260 | 0.888689 | 4.722633e-73 | -8.615850e-47 |
| Msa0534720 | Msa1429260 | 0.814149 | 1.784612e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429260 | MtrunA17_Chr3g0118411 | 96.893 | 354 | 11 | 0 | 7 | 360 | 1 | 354 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429260 | AT5G21140.1 | 55.319 | 282 | 120 | 3 | 9 | 289 | 2 | 278 | 2.27e-105 | 312 |
Find 103 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCTCTCAATCTTAATT+TGG | 0.148843 | tig0026478:+8672 | Msa1429260:CDS |
| CCACATGCATTGAAGAATTT+TGG | 0.174792 | tig0026478:+9581 | Msa1429260:CDS |
| TATGATGGCCAAGTTTATTA+TGG | 0.208577 | tig0026478:+7836 | Msa1429260:CDS |
| GCTATTTGATGCGTTTATTC+TGG | 0.257984 | tig0026478:+7757 | Msa1429260:CDS |
| GTCTCTACGGCTTCTGCTTT+GGG | 0.261719 | tig0026478:-10446 | None:intergenic |
| TCCACAAATTGCTTTCTATA+AGG | 0.279022 | tig0026478:+7913 | Msa1429260:CDS |
| AGTCTCTACGGCTTCTGCTT+TGG | 0.294534 | tig0026478:-10447 | None:intergenic |
| GCCCAAGTTGTGGCACTTCA+TGG | 0.335504 | tig0026478:+10411 | Msa1429260:CDS |
| TAGGGCGCTGTTGTAAGTTT+AGG | 0.370019 | tig0026478:-10744 | None:intergenic |
| TTGCAATGAAGCTGGAATAA+AGG | 0.376225 | tig0026478:+9751 | Msa1429260:CDS |
| GCCTTGATATTGTTTATTAG+TGG | 0.384453 | tig0026478:+11037 | Msa1429260:three_prime_UTR |
| CTGATATTTAGATTACTAGA+AGG | 0.394230 | tig0026478:-10935 | None:intergenic |
| TCTGCTTTGGGTACTGCAAA+TGG | 0.398255 | tig0026478:-10434 | None:intergenic |
| CGCAGTTGGATGCAGCAATC+AGG | 0.407043 | tig0026478:+10556 | Msa1429260:CDS |
| TCTGCGAGAAAATTTGCTTC+AGG | 0.409397 | tig0026478:-10285 | None:intergenic |
| CAATCTTAATTTGGAAAGCC+AGG | 0.440880 | tig0026478:+8681 | Msa1429260:CDS |
| AGCTTCATTGCAAACGTGAC+AGG | 0.446876 | tig0026478:-9741 | None:intergenic |
| GCTTTACTAGTGATGCAGTT+AGG | 0.451370 | tig0026478:+10840 | Msa1429260:three_prime_UTR |
| GGCCATGAAGTGCCACAACT+TGG | 0.452622 | tig0026478:-10413 | None:intergenic |
| AGGCAAAGCCAACGAGCAAC+TGG | 0.465810 | tig0026478:+10488 | Msa1429260:CDS |
| CTTGTCACGGGGCCCGCTCA+AGG | 0.475358 | tig0026478:+7341 | Msa1429260:CDS |
| TGTAAGACTTTCTCCTTGAG+CGG | 0.477735 | tig0026478:-7354 | None:intergenic |
| GTCATCCTCAACAATTGTAT+TGG | 0.481631 | tig0026478:-10534 | None:intergenic |
| GAAACCAACTGCGGAGATCA+AGG | 0.482952 | tig0026478:-9700 | None:intergenic |
| GTTGCTCGTTGGCTTTGCCT+AGG | 0.484763 | tig0026478:-10485 | None:intergenic |
| GTGCCCGTCCATTGTCATGC+TGG | 0.489028 | tig0026478:-10604 | None:intergenic |
| GATGATGATTGAGATGCATC+AGG | 0.495582 | tig0026478:-10674 | None:intergenic |
| CATCAATGCCCCTACCTCAA+TGG | 0.498231 | tig0026478:-10978 | None:intergenic |
| CGTGTCAATGCCATTGAGGT+AGG | 0.498449 | tig0026478:+10968 | Msa1429260:three_prime_UTR |
| ACTCAAAGTTAGCACAAGAA+AGG | 0.498529 | tig0026478:-7793 | None:intergenic |
| TAAACTTACAACAGCGCCCT+AGG | 0.499339 | tig0026478:+10746 | Msa1429260:exon |
| TGTATACTTTGTGCCCAGCT+TGG | 0.504273 | tig0026478:-7888 | None:intergenic |
| GATGCATCTCAATCATCATC+AGG | 0.506630 | tig0026478:+10677 | Msa1429260:CDS |
| AATTCAATCTCTCTTGTCAC+GGG | 0.507948 | tig0026478:+7329 | Msa1429260:CDS |
| TTCAGATGAACAATCCAAGC+TGG | 0.508896 | tig0026478:+7874 | Msa1429260:CDS |
| GCCTTATAGAAAGCAATTTG+TGG | 0.513410 | tig0026478:-7914 | None:intergenic |
| GCTATTGAAAGAAGTATGTC+GGG | 0.513625 | tig0026478:+7279 | Msa1429260:intron |
| ACCACTAATAAACAATATCA+AGG | 0.520901 | tig0026478:-11038 | None:intergenic |
| CAACGAGCAACTGGTTCTAA+AGG | 0.525919 | tig0026478:+10497 | Msa1429260:CDS |
| CAACTGGTTCTAAAGGTAAG+AGG | 0.525979 | tig0026478:+10504 | Msa1429260:CDS |
| CATTCCTTGATCTCCGCAGT+TGG | 0.526558 | tig0026478:+9696 | Msa1429260:CDS |
| GTAAGACTTTCTCCTTGAGC+GGG | 0.528046 | tig0026478:-7353 | None:intergenic |
| AGCTATTGAAAGAAGTATGT+CGG | 0.530319 | tig0026478:+7278 | Msa1429260:intron |
| TAACTAATCCATAATAAACT+TGG | 0.532488 | tig0026478:-7844 | None:intergenic |
| GTGTCAATGCCATTGAGGTA+GGG | 0.532564 | tig0026478:+10969 | Msa1429260:three_prime_UTR |
| CTCAAAGTTAGCACAAGAAA+GGG | 0.532992 | tig0026478:-7792 | None:intergenic |
| ATGCATGTGGCACATGTGGT+TGG | 0.535579 | tig0026478:-9568 | None:intergenic |
| AGTCTTACACTCCATGTTCG+AGG | 0.535686 | tig0026478:+7368 | Msa1429260:CDS |
| GCCATGAAGTGCCACAACTT+GGG | 0.545475 | tig0026478:-10412 | None:intergenic |
| GTTTATTCTGGCAATGAACA+AGG | 0.546129 | tig0026478:+7769 | Msa1429260:CDS |
| GTTCAAGATGCCACTGCAGA+TGG | 0.549157 | tig0026478:+8634 | Msa1429260:CDS |
| TTGTCATGCTGGCTCTCAGT+AGG | 0.549886 | tig0026478:-10593 | None:intergenic |
| GAGAACTTGCGAGGGACTTG+TGG | 0.550568 | tig0026478:+9630 | Msa1429260:CDS |
| CTTTAGAACCAGTTGCTCGT+TGG | 0.551727 | tig0026478:-10496 | None:intergenic |
| CTTAGTGAGATCCTCGAACA+TGG | 0.551810 | tig0026478:-7379 | None:intergenic |
| ACTTGCGAGGGACTTGTGGT+TGG | 0.551986 | tig0026478:+9634 | Msa1429260:CDS |
| TGTCAATGCCATTGAGGTAG+GGG | 0.552304 | tig0026478:+10970 | Msa1429260:three_prime_UTR |
| TGTCACGTTTGCAATGAAGC+TGG | 0.552411 | tig0026478:+9743 | Msa1429260:CDS |
| TAATTCAATCTCTCTTGTCA+CGG | 0.552688 | tig0026478:+7328 | Msa1429260:CDS |
| AAGATTGAGAGCATCAATGC+TGG | 0.554345 | tig0026478:-8665 | None:intergenic |
| AGTGTCATCTTCAGTCTCTA+CGG | 0.555465 | tig0026478:-10459 | None:intergenic |
| ACAATGGACGGGCACGAACA+AGG | 0.562042 | tig0026478:+10612 | Msa1429260:CDS |
| AGTCTAACATTACCATCTGC+AGG | 0.566946 | tig0026478:-9662 | None:intergenic |
| TGTTGTAAGTTTAGGTCCGA+CGG | 0.569183 | tig0026478:-10736 | None:intergenic |
| GCAAAAGCTTGCCCAAGTTG+TGG | 0.572714 | tig0026478:+10401 | Msa1429260:CDS |
| AATTTAGCAATATCTTGTTG+TGG | 0.575754 | tig0026478:+10884 | Msa1429260:three_prime_UTR |
| CTAGTATAGGCACTGATCGT+CGG | 0.580994 | tig0026478:+7735 | Msa1429260:intron |
| CCAAAATTCTTCAATGCATG+TGG | 0.581660 | tig0026478:-9581 | None:intergenic |
| AGAGCCAGCATGACAATGGA+CGG | 0.582782 | tig0026478:+10600 | Msa1429260:CDS |
| TTCAATGCATGTGGCACATG+TGG | 0.583553 | tig0026478:-9572 | None:intergenic |
| GTTGTAAGTTTAGGTCCGAC+GGG | 0.584461 | tig0026478:-10735 | None:intergenic |
| TGTTGTGGTTGACTGACCTG+TGG | 0.584548 | tig0026478:+10899 | Msa1429260:three_prime_UTR |
| CTGAAGATGACACTGGACCT+AGG | 0.589195 | tig0026478:+10468 | Msa1429260:CDS |
| GGCTGCATTGATCAATATGA+TGG | 0.589372 | tig0026478:+7821 | Msa1429260:CDS |
| AGGTTTGTGATTCAAGCCAC+AGG | 0.591363 | tig0026478:-10915 | None:intergenic |
| ACAGCGCCCTAGGGAATGCT+AGG | 0.593001 | tig0026478:+10756 | Msa1429260:three_prime_UTR |
| ATTGTTGAGGATGACGCAGT+TGG | 0.596930 | tig0026478:+10542 | Msa1429260:CDS |
| ATACTCTAAGAGAACTTGCG+AGG | 0.601702 | tig0026478:+9621 | Msa1429260:CDS |
| TGCATCGCCTAGCATTCCCT+AGG | 0.602830 | tig0026478:-10763 | None:intergenic |
| GTGACTGATTCAGAATCTCA+AGG | 0.606009 | tig0026478:+9542 | Msa1429260:CDS |
| ACTGAGAGCCAGCATGACAA+TGG | 0.606660 | tig0026478:+10596 | Msa1429260:CDS |
| TCAGATGAACAATCCAAGCT+GGG | 0.608821 | tig0026478:+7875 | Msa1429260:CDS |
| TGTGCTAACTTTGAGTTGCG+TGG | 0.609737 | tig0026478:+7800 | Msa1429260:CDS |
| GAGCCAGCATGACAATGGAC+GGG | 0.611437 | tig0026478:+10601 | Msa1429260:CDS |
| AAACTTACAACAGCGCCCTA+GGG | 0.612971 | tig0026478:+10747 | Msa1429260:exon |
| TACTCTAAGAGAACTTGCGA+GGG | 0.614485 | tig0026478:+9622 | Msa1429260:CDS |
| AAGAGCCAATACAATTGTTG+AGG | 0.617128 | tig0026478:+10529 | Msa1429260:CDS |
| TCATTGCAAACGTGACAGGA+TGG | 0.617289 | tig0026478:-9737 | None:intergenic |
| TTGAAAGAAGTATGTCGGGT+GGG | 0.618893 | tig0026478:+7283 | Msa1429260:CDS |
| GCATCGCCTAGCATTCCCTA+GGG | 0.628693 | tig0026478:-10762 | None:intergenic |
| GCAGATGGTAATGTTAGACT+TGG | 0.634514 | tig0026478:+9665 | Msa1429260:CDS |
| GACGGGCACGAACAAGGACT+AGG | 0.635871 | tig0026478:+10618 | Msa1429260:CDS |
| TGGTTGGACATGCCTGCAGA+TGG | 0.638572 | tig0026478:+9650 | Msa1429260:CDS |
| GGAGATAAAACCATCTGCAG+TGG | 0.645973 | tig0026478:-8644 | None:intergenic |
| ACACTTGAAGCAGATACAGT+AGG | 0.658801 | tig0026478:+10650 | Msa1429260:CDS |
| ATTGAAAGAAGTATGTCGGG+TGG | 0.662835 | tig0026478:+7282 | Msa1429260:CDS |
| GTAGAGACTGAAGATGACAC+TGG | 0.669190 | tig0026478:+10461 | Msa1429260:CDS |
| AATTCGTGTCAATGCCATTG+AGG | 0.669246 | tig0026478:+10964 | Msa1429260:three_prime_UTR |
| ATGATGATTGAGATGCATCA+GGG | 0.681950 | tig0026478:-10673 | None:intergenic |
| GATTGAATTATGACATGATG+TGG | 0.691274 | tig0026478:-7315 | None:intergenic |
| TAACCCGAAAATATTCCCGT+CGG | 0.700418 | tig0026478:+10720 | Msa1429260:CDS |
| ATTCAATCTCTCTTGTCACG+GGG | 0.705694 | tig0026478:+7330 | Msa1429260:CDS |
| CATTACTTCGAAACCAACTG+CGG | 0.732038 | tig0026478:-9709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATTAAAATAAAAAGC+GGG | - | tig0026478:7506-7525 | None:intergenic | 10.0% |
| !! | ATATAAAATGGAAAATATAA+AGG | - | tig0026478:7632-7651 | None:intergenic | 10.0% |
| !! | CAATAATTATTAATTGAATT+AGG | + | tig0026478:8431-8450 | Msa1429260:intron | 10.0% |
| !!! | AATCTGTTATTTTTTATTAA+AGG | - | tig0026478:8605-8624 | None:intergenic | 10.0% |
| !!! | AACATTAAAGTTAATTTTAA+CGG | - | tig0026478:9466-9485 | None:intergenic | 10.0% |
| !! | ATTTATGAAAATATAATTCA+TGG | - | tig0026478:10024-10043 | None:intergenic | 10.0% |
| !!! | TTTATTTTTCCCAATTAATT+TGG | + | tig0026478:6500-6519 | Msa1429260:intron | 15.0% |
| !! | ATAAATTAAAATAAAAAGCG+GGG | - | tig0026478:7505-7524 | None:intergenic | 15.0% |
| !!! | TAATATATGGTTGATTTATA+AGG | + | tig0026478:8114-8133 | Msa1429260:intron | 15.0% |
| !! | GAAATATTAAAATTTGACTA+TGG | + | tig0026478:8136-8155 | Msa1429260:intron | 15.0% |
| !!! | TATTATCTTGTTATTCAATA+TGG | - | tig0026478:9358-9377 | None:intergenic | 15.0% |
| !!! | CTTTTTTTCTGAGTTATTTT+CGG | + | tig0026478:6554-6573 | Msa1429260:intron | 20.0% |
| !! | GAACAACATAAATAACAATA+TGG | - | tig0026478:6753-6772 | None:intergenic | 20.0% |
| !! | TGTATGTGTATAATGAAAAT+GGG | + | tig0026478:6861-6880 | Msa1429260:intron | 20.0% |
| !! | TTTGTTAAATGAAGCAATTA+GGG | + | tig0026478:6954-6973 | Msa1429260:intron | 20.0% |
| !!! | ATTTTTATTCCTGAAAAATC+TGG | + | tig0026478:7211-7230 | Msa1429260:intron | 20.0% |
| !! | TAACTAATCCATAATAAACT+TGG | - | tig0026478:7847-7866 | None:intergenic | 20.0% |
| !! | AAATTTAATTACACTCACAA+TGG | - | tig0026478:7939-7958 | None:intergenic | 20.0% |
| !!! | GTTTGAAATGTCTTAATATA+TGG | + | tig0026478:8101-8120 | Msa1429260:intron | 20.0% |
| !! | TTGACTATGGAAAATTTAAA+TGG | + | tig0026478:8149-8168 | Msa1429260:intron | 20.0% |
| !!! | ATGGAAAATTTAAATGGTTT+TGG | + | tig0026478:8155-8174 | Msa1429260:intron | 20.0% |
| !! | CATAGAATTAAAAGAAGATT+AGG | + | tig0026478:8294-8313 | Msa1429260:intron | 20.0% |
| !! | TCTCATTTATTCTTACTAAT+AGG | + | tig0026478:8375-8394 | Msa1429260:intron | 20.0% |
| !! | CTCATTTATTCTTACTAATA+GGG | + | tig0026478:8376-8395 | Msa1429260:intron | 20.0% |
| !! | AAGTTTAATGAGATGAAAAT+TGG | - | tig0026478:8975-8994 | None:intergenic | 20.0% |
| !!! | AAAATTTCTAGATCCATTAT+TGG | - | tig0026478:9098-9117 | None:intergenic | 20.0% |
| !!! | AAATTTTATGATCTATGTTC+AGG | + | tig0026478:9511-9530 | Msa1429260:intron | 20.0% |
| !!! | ATAGCTTTCTTCTAATTTTA+CGG | + | tig0026478:10044-10063 | Msa1429260:intron | 20.0% |
| ! | AAAAATAAATATGCCTTTGG+CGG | - | tig0026478:6489-6508 | None:intergenic | 25.0% |
| !! | TCCTTTTCACCAAATTAATT+GGG | - | tig0026478:6512-6531 | None:intergenic | 25.0% |
| !! | ATCCTTTTCACCAAATTAAT+TGG | - | tig0026478:6513-6532 | None:intergenic | 25.0% |
| ! | ATAACTCAGAAAAAAAGAGA+GGG | - | tig0026478:6551-6570 | None:intergenic | 25.0% |
| ! | AATAACTCAGAAAAAAAGAG+AGG | - | tig0026478:6552-6571 | None:intergenic | 25.0% |
| ! | GTGTATGTGTATAATGAAAA+TGG | + | tig0026478:6860-6879 | Msa1429260:intron | 25.0% |
| ! | GTATGTGTATAATGAAAATG+GGG | + | tig0026478:6862-6881 | Msa1429260:intron | 25.0% |
| ! | TATGTGTATAATGAAAATGG+GGG | + | tig0026478:6863-6882 | Msa1429260:intron | 25.0% |
| ! | CATTTAACAAACCAAATTGT+TGG | - | tig0026478:6945-6964 | None:intergenic | 25.0% |
| !! | GTTTGTTAAATGAAGCAATT+AGG | + | tig0026478:6953-6972 | Msa1429260:intron | 25.0% |
| ! | TTGTTAAATGAAGCAATTAG+GGG | + | tig0026478:6955-6974 | Msa1429260:intron | 25.0% |
| ! | GTTTATAAGCATTTGATTGT+TGG | - | tig0026478:7158-7177 | None:intergenic | 25.0% |
| ! | TTTCAATAGCTATTCACTTA+CGG | - | tig0026478:7269-7288 | None:intergenic | 25.0% |
| !! | ACAGTTTGTAAACATTTTCA+GGG | - | tig0026478:7432-7451 | None:intergenic | 25.0% |
| ! | AACTAAAACTGAACAAAGAA+AGG | - | tig0026478:7474-7493 | None:intergenic | 25.0% |
| ! | GATAAAAGAAAAAGCTAACA+AGG | - | tig0026478:7690-7709 | None:intergenic | 25.0% |
| ! | TATCATGTTCTTGATTGAAT+TGG | + | tig0026478:7706-7725 | Msa1429260:intron | 25.0% |
| !!! | ATGGTTTTGGTCAATAATTA+AGG | + | tig0026478:8168-8187 | Msa1429260:intron | 25.0% |
| ! | GGTGTTTAAAAATGAAGTTT+AGG | + | tig0026478:8194-8213 | Msa1429260:intron | 25.0% |
| ! | ATTCTATGATCTTGTACATA+TGG | - | tig0026478:8282-8301 | None:intergenic | 25.0% |
| ! | AAGTATGATCAAACATATCA+AGG | + | tig0026478:8784-8803 | Msa1429260:intron | 25.0% |
| ! | TTTACAGTCTTACTTAATGA+AGG | + | tig0026478:9017-9036 | Msa1429260:intron | 25.0% |
| ! | GTAAATTCTCAATATGATCT+GGG | - | tig0026478:9066-9085 | None:intergenic | 25.0% |
| ! | AGTAAATTCTCAATATGATC+TGG | - | tig0026478:9067-9086 | None:intergenic | 25.0% |
| !! | TCTAGAAATTTTCTACAATG+AGG | + | tig0026478:9106-9125 | Msa1429260:intron | 25.0% |
| !! | CTAGAAATTTTCTACAATGA+GGG | + | tig0026478:9107-9126 | Msa1429260:intron | 25.0% |
| !!! | ACAATTATTTTCTTTGAGAC+AGG | - | tig0026478:9295-9314 | None:intergenic | 25.0% |
| ! | AAACATCTTTAACATGTTCA+AGG | + | tig0026478:9970-9989 | Msa1429260:intron | 25.0% |
| ! | AACATCTTTAACATGTTCAA+GGG | + | tig0026478:9971-9990 | Msa1429260:intron | 25.0% |
| !! | AATTTTACGGAGTAATCTTT+AGG | + | tig0026478:10057-10076 | Msa1429260:intron | 25.0% |
| !! | ATTTTACGGAGTAATCTTTA+GGG | + | tig0026478:10058-10077 | Msa1429260:intron | 25.0% |
| !!! | CATTTCTAAGATGGTAAAAA+TGG | - | tig0026478:10331-10350 | None:intergenic | 25.0% |
| ! | AATTTAGCAATATCTTGTTG+TGG | + | tig0026478:10884-10903 | Msa1429260:three_prime_UTR | 25.0% |
| ! | CTGATATTTAGATTACTAGA+AGG | - | tig0026478:10938-10957 | None:intergenic | 25.0% |
| AAAATAAATATGCCTTTGGC+GGG | - | tig0026478:6488-6507 | None:intergenic | 30.0% | |
| GGGAAAAATAAATATGCCTT+TGG | - | tig0026478:6492-6511 | None:intergenic | 30.0% | |
| ! | TCCCAATTAATTTGGTGAAA+AGG | + | tig0026478:6508-6527 | Msa1429260:intron | 30.0% |
| AGAAGAAAACGGTGAAATTA+GGG | - | tig0026478:6653-6672 | None:intergenic | 30.0% | |
| ATGTGTATAATGAAAATGGG+GGG | + | tig0026478:6864-6883 | Msa1429260:intron | 30.0% | |
| TCAGATTCTAACCAACAATT+TGG | + | tig0026478:6931-6950 | Msa1429260:intron | 30.0% | |
| CAATACAAAAGACATGAAAG+AGG | - | tig0026478:7089-7108 | None:intergenic | 30.0% | |
| ! | AAAAATCTGCCAGATTTTTC+AGG | - | tig0026478:7223-7242 | None:intergenic | 30.0% |
| ! | TGAAAAATCTGGCAGATTTT+TGG | + | tig0026478:7222-7241 | Msa1429260:intron | 30.0% |
| CTATTCACTTACGGAAAAAT+GGG | - | tig0026478:7260-7279 | None:intergenic | 30.0% | |
| ! | AGCTATTGAAAGAAGTATGT+CGG | + | tig0026478:7278-7297 | Msa1429260:intron | 30.0% |
| GATTGAATTATGACATGATG+TGG | - | tig0026478:7318-7337 | None:intergenic | 30.0% | |
| TAATTCAATCTCTCTTGTCA+CGG | + | tig0026478:7328-7347 | Msa1429260:CDS | 30.0% | |
| !! | TTGTAAACATTTTCAGGGAA+AGG | - | tig0026478:7427-7446 | None:intergenic | 30.0% |
| ! | GACAGTTTGTAAACATTTTC+AGG | - | tig0026478:7433-7452 | None:intergenic | 30.0% |
| AATTAAAATAAAAAGCGGGG+AGG | - | tig0026478:7502-7521 | None:intergenic | 30.0% | |
| AAAACTATCGTGGAAAAAGA+AGG | - | tig0026478:7571-7590 | None:intergenic | 30.0% | |
| ! | TTTTAGCATGTTGATCACTA+AGG | + | tig0026478:7587-7606 | Msa1429260:intron | 30.0% |
| TATGATGGCCAAGTTTATTA+TGG | + | tig0026478:7836-7855 | Msa1429260:CDS | 30.0% | |
| TCCACAAATTGCTTTCTATA+AGG | + | tig0026478:7913-7932 | Msa1429260:CDS | 30.0% | |
| ATCTACTTGTGTGTCATATT+AGG | + | tig0026478:8064-8083 | Msa1429260:intron | 30.0% | |
| TTTGGTCAATAATTAAGGTG+AGG | + | tig0026478:8173-8192 | Msa1429260:intron | 30.0% | |
| !! | AGAATTGATGACGAAACAAT+CGG | - | tig0026478:8358-8377 | None:intergenic | 30.0% |
| TAATTATTGAAACCTCCACT+TGG | - | tig0026478:8420-8439 | None:intergenic | 30.0% | |
| TGTTTGTTCAGTTTAATAGC+TGG | + | tig0026478:8535-8554 | Msa1429260:intron | 30.0% | |
| GTTTGTTCAGTTTAATAGCT+GGG | + | tig0026478:8536-8555 | Msa1429260:intron | 30.0% | |
| !!! | TTTTGAGATGTCATAGTATC+AGG | - | tig0026478:8564-8583 | None:intergenic | 30.0% |
| TGATGCTCTCAATCTTAATT+TGG | + | tig0026478:8672-8691 | Msa1429260:CDS | 30.0% | |
| TTTGATGAGCAGAAAAATGT+AGG | - | tig0026478:8724-8743 | None:intergenic | 30.0% | |
| ! | GTAGATTAGTGAGATTTTCT+TGG | + | tig0026478:8828-8847 | Msa1429260:intron | 30.0% |
| ! | ATTAGTGAGATTTTCTTGGT+TGG | + | tig0026478:8832-8851 | Msa1429260:intron | 30.0% |
| TCTCACTAATTTCAGTTGTT+TGG | - | tig0026478:8867-8886 | None:intergenic | 30.0% | |
| TGTTTGACAGATGAAAACTA+GGG | - | tig0026478:8949-8968 | None:intergenic | 30.0% | |
| ATGTTTGACAGATGAAAACT+AGG | - | tig0026478:8950-8969 | None:intergenic | 30.0% | |
| ! | ATGGACATCTATTTTCAGTT+TGG | - | tig0026478:9339-9358 | None:intergenic | 30.0% |
| AAGATTGTCAAAATGCAACA+GGG | - | tig0026478:9781-9800 | None:intergenic | 30.0% | |
| TAAGATTGTCAAAATGCAAC+AGG | - | tig0026478:9782-9801 | None:intergenic | 30.0% | |
| AGCTCTATGTTAATTCAAAG+TGG | - | tig0026478:9846-9865 | None:intergenic | 30.0% | |
| AATATTTAACACCCAACAGA+AGG | - | tig0026478:9880-9899 | None:intergenic | 30.0% | |
| ! | CAACATTTTCCCTACAATTT+CGG | - | tig0026478:9911-9930 | None:intergenic | 30.0% |
| AAAATGTTGAAAGAGACTAG+TGG | + | tig0026478:9922-9941 | Msa1429260:intron | 30.0% | |
| ! | ATTGGTGATTGTTTGTCTTA+AGG | - | tig0026478:10096-10115 | None:intergenic | 30.0% |
| CTTGTAATGGCAGAAAAAAT+TGG | - | tig0026478:10114-10133 | None:intergenic | 30.0% | |
| !!! | CAATTTTTTCTGCCATTACA+AGG | + | tig0026478:10112-10131 | Msa1429260:intron | 30.0% |
| TTCTGGATCTGATAATTCAT+TGG | + | tig0026478:10198-10217 | Msa1429260:intron | 30.0% | |
| TCAGAAAAAAAGAGAGGGAA+AGG | - | tig0026478:6546-6565 | None:intergenic | 35.0% | |
| GAATCGTAGGGTTTATGTTA+TGG | - | tig0026478:6583-6602 | None:intergenic | 35.0% | |
| ATTGGAGAAACTGAATCGTA+GGG | - | tig0026478:6595-6614 | None:intergenic | 35.0% | |
| ! | AACGGTGAAATTAGGGTTTT+GGG | - | tig0026478:6646-6665 | None:intergenic | 35.0% |
| ! | AAACGGTGAAATTAGGGTTT+TGG | - | tig0026478:6647-6666 | None:intergenic | 35.0% |
| GAGAAGAAAACGGTGAAATT+AGG | - | tig0026478:6654-6673 | None:intergenic | 35.0% | |
| CCTGAGTTATTTATTAGTCG+CGG | - | tig0026478:6688-6707 | None:intergenic | 35.0% | |
| GCTATTCACTTACGGAAAAA+TGG | - | tig0026478:7261-7280 | None:intergenic | 35.0% | |
| ! | GCTATTGAAAGAAGTATGTC+GGG | + | tig0026478:7279-7298 | Msa1429260:intron | 35.0% |
| AATTCAATCTCTCTTGTCAC+GGG | + | tig0026478:7329-7348 | Msa1429260:CDS | 35.0% | |
| GATCTCACTAAGAAAAATCC+AGG | + | tig0026478:7390-7409 | Msa1429260:CDS | 35.0% | |
| GGAAAGGAAAAAGAAAAACC+TGG | - | tig0026478:7411-7430 | None:intergenic | 35.0% | |
| TCAACATGCTAAAACTATCG+TGG | - | tig0026478:7581-7600 | None:intergenic | 35.0% | |
| ! | GAATTGGTTTCTCCTAGTAT+AGG | + | tig0026478:7722-7741 | Msa1429260:intron | 35.0% |
| GCTATTTGATGCGTTTATTC+TGG | + | tig0026478:7757-7776 | Msa1429260:CDS | 35.0% | |
| GTTTATTCTGGCAATGAACA+AGG | + | tig0026478:7769-7788 | Msa1429260:CDS | 35.0% | |
| CTCAAAGTTAGCACAAGAAA+GGG | - | tig0026478:7795-7814 | None:intergenic | 35.0% | |
| ACTCAAAGTTAGCACAAGAA+AGG | - | tig0026478:7796-7815 | None:intergenic | 35.0% | |
| GCCTTATAGAAAGCAATTTG+TGG | - | tig0026478:7917-7936 | None:intergenic | 35.0% | |
| ACAGATAAACAGGAAAACAG+AGG | - | tig0026478:7963-7982 | None:intergenic | 35.0% | |
| ACGTATGTGAACAGATAAAC+AGG | - | tig0026478:7973-7992 | None:intergenic | 35.0% | |
| TGTTCACATACGTGATGTAA+TGG | + | tig0026478:7980-7999 | Msa1429260:intron | 35.0% | |
| GTTCACATACGTGATGTAAT+GGG | + | tig0026478:7981-8000 | Msa1429260:intron | 35.0% | |
| TGCTTTGCATATTCCATTGT+GGG | + | tig0026478:8014-8033 | Msa1429260:intron | 35.0% | |
| ! | ATGTTGATTGCATGTCAGAT+GGG | + | tig0026478:8217-8236 | Msa1429260:intron | 35.0% |
| TACATACTGATAGATCCAAG+TGG | + | tig0026478:8402-8421 | Msa1429260:intron | 35.0% | |
| ! | CAATCTTAATTTGGAAAGCC+AGG | + | tig0026478:8681-8700 | Msa1429260:CDS | 35.0% |
| TTACTCGTTGTCTCCAATAA+TGG | + | tig0026478:9082-9101 | Msa1429260:intron | 35.0% | |
| ! | GAGTAGAAGCTTTGACATTT+CGG | - | tig0026478:9214-9233 | None:intergenic | 35.0% |
| ! | GACATCTATTTTCAGTTTGG+CGG | - | tig0026478:9336-9355 | None:intergenic | 35.0% |
| TGTTGAAACATAGATGATGC+TGG | + | tig0026478:9437-9456 | Msa1429260:intron | 35.0% | |
| CCAAAATTCTTCAATGCATG+TGG | - | tig0026478:9584-9603 | None:intergenic | 35.0% | |
| ! | CCACATGCATTGAAGAATTT+TGG | + | tig0026478:9581-9600 | Msa1429260:CDS | 35.0% |
| TTGCAATGAAGCTGGAATAA+AGG | + | tig0026478:9751-9770 | Msa1429260:CDS | 35.0% | |
| TTTCTGTTTACTCCTTCTGT+TGG | + | tig0026478:9865-9884 | Msa1429260:intron | 35.0% | |
| TTCTGTTTACTCCTTCTGTT+GGG | + | tig0026478:9866-9885 | Msa1429260:intron | 35.0% | |
| TTTCCATCTGTTCCTTGTAA+TGG | - | tig0026478:10127-10146 | None:intergenic | 35.0% | |
| ! | CAATTTAGCGAAAGTACAAC+TGG | - | tig0026478:10171-10190 | None:intergenic | 35.0% |
| !! | CGCTAAATTGTTGCTATTTC+TGG | + | tig0026478:10181-10200 | Msa1429260:intron | 35.0% |
| TTCATTGGTCAATACCTAAC+AGG | + | tig0026478:10213-10232 | Msa1429260:intron | 35.0% | |
| ! | GCAAATTTTCTCGCAGATAA+AGG | + | tig0026478:10291-10310 | Msa1429260:CDS | 35.0% |
| ! | GGAACAGAACATTTCTAAGA+TGG | - | tig0026478:10340-10359 | None:intergenic | 35.0% |
| ! | GTCTTATTGCTGTTACTCAT+TGG | + | tig0026478:10368-10387 | Msa1429260:intron | 35.0% |
| AAGAGCCAATACAATTGTTG+AGG | + | tig0026478:10529-10548 | Msa1429260:CDS | 35.0% | |
| GTCATCCTCAACAATTGTAT+TGG | - | tig0026478:10537-10556 | None:intergenic | 35.0% | |
| ATGATGATTGAGATGCATCA+GGG | - | tig0026478:10676-10695 | None:intergenic | 35.0% | |
| !!! | TTGCTGCTGACAATTTTTTG+AGG | + | tig0026478:10793-10812 | Msa1429260:three_prime_UTR | 35.0% |
| !!! | CAATTTTTTGAGGAGCTTCA+TGG | + | tig0026478:10803-10822 | Msa1429260:three_prime_UTR | 35.0% |
| GATTGGAGAAACTGAATCGT+AGG | - | tig0026478:6596-6615 | None:intergenic | 40.0% | |
| GAAAAGGAGGAATTAGGGAT+TGG | - | tig0026478:6613-6632 | None:intergenic | 40.0% | |
| TAGCGGAAAAGGAGGAATTA+GGG | - | tig0026478:6618-6637 | None:intergenic | 40.0% | |
| GTGAAGGAGAGAGAAGAAAA+CGG | - | tig0026478:6664-6683 | None:intergenic | 40.0% | |
| ATTTATTAGTCGCGGAGTGA+AGG | - | tig0026478:6680-6699 | None:intergenic | 40.0% | |
| CCGCGACTAATAAATAACTC+AGG | + | tig0026478:6685-6704 | Msa1429260:intron | 40.0% | |
| TGTTGTGAAGACCTAGATTG+AGG | + | tig0026478:6824-6843 | Msa1429260:intron | 40.0% | |
| AGACCTAGATTGAGGAATAG+TGG | + | tig0026478:6832-6851 | Msa1429260:intron | 40.0% | |
| ACACCACTATTCCTCAATCT+AGG | - | tig0026478:6838-6857 | None:intergenic | 40.0% | |
| TAGATTGAGGAATAGTGGTG+TGG | + | tig0026478:6837-6856 | Msa1429260:intron | 40.0% | |
| AGATTGAGGAATAGTGGTGT+GGG | + | tig0026478:6838-6857 | Msa1429260:intron | 40.0% | |
| ATTTCAGCACCCATTCGAAA+TGG | + | tig0026478:6891-6910 | Msa1429260:intron | 40.0% | |
| TTTCAGCACCCATTCGAAAT+GGG | + | tig0026478:6892-6911 | Msa1429260:intron | 40.0% | |
| TGGAACAACCCATTTCGAAT+GGG | - | tig0026478:6903-6922 | None:intergenic | 40.0% | |
| AAGCAATTAGGGGTTGAACT+AGG | + | tig0026478:6965-6984 | Msa1429260:intron | 40.0% | |
| ! | ATTGAAAGAAGTATGTCGGG+TGG | + | tig0026478:7282-7301 | Msa1429260:CDS | 40.0% |
| ! | TTGAAAGAAGTATGTCGGGT+GGG | + | tig0026478:7283-7302 | Msa1429260:CDS | 40.0% |
| ATTCAATCTCTCTTGTCACG+GGG | + | tig0026478:7330-7349 | Msa1429260:CDS | 40.0% | |
| TGTAAGACTTTCTCCTTGAG+CGG | - | tig0026478:7357-7376 | None:intergenic | 40.0% | |
| ! | GGCTGCATTGATCAATATGA+TGG | + | tig0026478:7821-7840 | Msa1429260:CDS | 40.0% |
| TTCAGATGAACAATCCAAGC+TGG | + | tig0026478:7874-7893 | Msa1429260:CDS | 40.0% | |
| TCAGATGAACAATCCAAGCT+GGG | + | tig0026478:7875-7894 | Msa1429260:CDS | 40.0% | |
| CTGCTTTGCATATTCCATTG+TGG | + | tig0026478:8013-8032 | Msa1429260:intron | 40.0% | |
| CAAAAGAACTTCACCCACAA+TGG | - | tig0026478:8030-8049 | None:intergenic | 40.0% | |
| ! | GATGTTGATTGCATGTCAGA+TGG | + | tig0026478:8216-8235 | Msa1429260:intron | 40.0% |
| ! | TGTTGATTGCATGTCAGATG+GGG | + | tig0026478:8218-8237 | Msa1429260:intron | 40.0% |
| ATACTGATAGATCCAAGTGG+AGG | + | tig0026478:8405-8424 | Msa1429260:intron | 40.0% | |
| ATCTAATCGACATGCGCAAA+TGG | - | tig0026478:8464-8483 | None:intergenic | 40.0% | |
| !! | AAGATTGAGAGCATCAATGC+TGG | - | tig0026478:8668-8687 | None:intergenic | 40.0% |
| GCAGGTGAAAGTTTATAACC+TGG | - | tig0026478:8702-8721 | None:intergenic | 40.0% | |
| ATGAGCAGAAAAATGTAGGC+AGG | - | tig0026478:8720-8739 | None:intergenic | 40.0% | |
| ! | AGTGAGATTTTCTTGGTTGG+TGG | + | tig0026478:8835-8854 | Msa1429260:intron | 40.0% |
| !!! | AGATTTTCTTGGTTGGTGGA+TGG | + | tig0026478:8839-8858 | Msa1429260:intron | 40.0% |
| CGAACATTCTGCTCAGTAAA+AGG | - | tig0026478:9407-9426 | None:intergenic | 40.0% | |
| ! | GTGACTGATTCAGAATCTCA+AGG | + | tig0026478:9542-9561 | Msa1429260:CDS | 40.0% |
| ! | ATACTCTAAGAGAACTTGCG+AGG | + | tig0026478:9621-9640 | Msa1429260:CDS | 40.0% |
| ! | TACTCTAAGAGAACTTGCGA+GGG | + | tig0026478:9622-9641 | Msa1429260:CDS | 40.0% |
| AGTCTAACATTACCATCTGC+AGG | - | tig0026478:9665-9684 | None:intergenic | 40.0% | |
| ! | GCAGATGGTAATGTTAGACT+TGG | + | tig0026478:9665-9684 | Msa1429260:CDS | 40.0% |
| CATTACTTCGAAACCAACTG+CGG | - | tig0026478:9712-9731 | None:intergenic | 40.0% | |
| TCACAGCTAATGATGTGGAA+AGG | - | tig0026478:9823-9842 | None:intergenic | 40.0% | |
| TTCTGTACCACCGAAATTGT+AGG | + | tig0026478:9898-9917 | Msa1429260:intron | 40.0% | |
| TCTGTACCACCGAAATTGTA+GGG | + | tig0026478:9899-9918 | Msa1429260:intron | 40.0% | |
| ! | CATTTTCCCTACAATTTCGG+TGG | - | tig0026478:9908-9927 | None:intergenic | 40.0% |
| ! | TTACGGAGTAATCTTTAGGG+AGG | + | tig0026478:10061-10080 | Msa1429260:intron | 40.0% |
| ! | TCTGCGAGAAAATTTGCTTC+AGG | - | tig0026478:10288-10307 | None:intergenic | 40.0% |
| ACAGCAATAAGACAACAGAC+AGG | - | tig0026478:10361-10380 | None:intergenic | 40.0% | |
| ! | GCTGTTACTCATTGGTGTTT+AGG | + | tig0026478:10376-10395 | Msa1429260:intron | 40.0% |
| AGTGTCATCTTCAGTCTCTA+CGG | - | tig0026478:10462-10481 | None:intergenic | 40.0% | |
| !! | CAACTGGTTCTAAAGGTAAG+AGG | + | tig0026478:10504-10523 | Msa1429260:CDS | 40.0% |
| ACACTTGAAGCAGATACAGT+AGG | + | tig0026478:10650-10669 | Msa1429260:CDS | 40.0% | |
| GATGATGATTGAGATGCATC+AGG | - | tig0026478:10677-10696 | None:intergenic | 40.0% | |
| GATGCATCTCAATCATCATC+AGG | + | tig0026478:10677-10696 | Msa1429260:CDS | 40.0% | |
| TAACCCGAAAATATTCCCGT+CGG | + | tig0026478:10720-10739 | Msa1429260:CDS | 40.0% | |
| TGTTGTAAGTTTAGGTCCGA+CGG | - | tig0026478:10739-10758 | None:intergenic | 40.0% | |
| GCTTTACTAGTGATGCAGTT+AGG | + | tig0026478:10840-10859 | Msa1429260:three_prime_UTR | 40.0% | |
| AATTCGTGTCAATGCCATTG+AGG | + | tig0026478:10964-10983 | Msa1429260:three_prime_UTR | 40.0% | |
| TATGTGTTGTATCCCGCCAA+AGG | + | tig0026478:6473-6492 | Msa1429260:intron | 45.0% | |
| ! | GTAGCGGAAAAGGAGGAATT+AGG | - | tig0026478:6619-6638 | None:intergenic | 45.0% |
| ! | TTTGGGAATCGTAGCGGAAA+AGG | - | tig0026478:6629-6648 | None:intergenic | 45.0% |
| !!! | TAGGGTTTTGGGAATCGTAG+CGG | - | tig0026478:6635-6654 | None:intergenic | 45.0% |
| CTGGAACAACCCATTTCGAA+TGG | - | tig0026478:6904-6923 | None:intergenic | 45.0% | |
| GTAAGACTTTCTCCTTGAGC+GGG | - | tig0026478:7356-7375 | None:intergenic | 45.0% | |
| AGTCTTACACTCCATGTTCG+AGG | + | tig0026478:7368-7387 | Msa1429260:CDS | 45.0% | |
| CTTAGTGAGATCCTCGAACA+TGG | - | tig0026478:7382-7401 | None:intergenic | 45.0% | |
| !! | CTAGTATAGGCACTGATCGT+CGG | + | tig0026478:7735-7754 | Msa1429260:intron | 45.0% |
| !! | TGTGCTAACTTTGAGTTGCG+TGG | + | tig0026478:7800-7819 | Msa1429260:CDS | 45.0% |
| TGTATACTTTGTGCCCAGCT+TGG | - | tig0026478:7891-7910 | None:intergenic | 45.0% | |
| GGAGATAAAACCATCTGCAG+TGG | - | tig0026478:8647-8666 | None:intergenic | 45.0% | |
| TTCAATGCATGTGGCACATG+TGG | - | tig0026478:9575-9594 | None:intergenic | 45.0% | |
| TCATTGCAAACGTGACAGGA+TGG | - | tig0026478:9740-9759 | None:intergenic | 45.0% | |
| AGCTTCATTGCAAACGTGAC+AGG | - | tig0026478:9744-9763 | None:intergenic | 45.0% | |
| TGTCACGTTTGCAATGAAGC+TGG | + | tig0026478:9743-9762 | Msa1429260:CDS | 45.0% | |
| AGTGGTCACAGCTAATGATG+TGG | - | tig0026478:9828-9847 | None:intergenic | 45.0% | |
| GTTGAAAGAGACTAGTGGTG+TGG | + | tig0026478:9927-9946 | Msa1429260:intron | 45.0% | |
| CTGCCATTACAAGGAACAGA+TGG | + | tig0026478:10121-10140 | Msa1429260:intron | 45.0% | |
| ! | TCTGCTTTGGGTACTGCAAA+TGG | - | tig0026478:10437-10456 | None:intergenic | 45.0% |
| GTAGAGACTGAAGATGACAC+TGG | + | tig0026478:10461-10480 | Msa1429260:CDS | 45.0% | |
| !! | CTTTAGAACCAGTTGCTCGT+TGG | - | tig0026478:10499-10518 | None:intergenic | 45.0% |
| !! | CAACGAGCAACTGGTTCTAA+AGG | + | tig0026478:10497-10516 | Msa1429260:CDS | 45.0% |
| ATTGTTGAGGATGACGCAGT+TGG | + | tig0026478:10542-10561 | Msa1429260:CDS | 45.0% | |
| ! | AGGTCCGACGGGAATATTTT+CGG | - | tig0026478:10727-10746 | None:intergenic | 45.0% |
| GTTGTAAGTTTAGGTCCGAC+GGG | - | tig0026478:10738-10757 | None:intergenic | 45.0% | |
| !! | TAGGGCGCTGTTGTAAGTTT+AGG | - | tig0026478:10747-10766 | None:intergenic | 45.0% |
| TAAACTTACAACAGCGCCCT+AGG | + | tig0026478:10746-10765 | Msa1429260:exon | 45.0% | |
| AAACTTACAACAGCGCCCTA+GGG | + | tig0026478:10747-10766 | Msa1429260:exon | 45.0% | |
| AGGTTTGTGATTCAAGCCAC+AGG | - | tig0026478:10918-10937 | None:intergenic | 45.0% | |
| GTGTCAATGCCATTGAGGTA+GGG | + | tig0026478:10969-10988 | Msa1429260:three_prime_UTR | 45.0% | |
| TGTCAATGCCATTGAGGTAG+GGG | + | tig0026478:10970-10989 | Msa1429260:three_prime_UTR | 45.0% | |
| !! | ATATAAATTAAAATAAAAAG+CGG | - | tig0026478:7507-7526 | None:intergenic | 5.0% |
| !! | AAACTAAAAATTATATAAAA+TGG | - | tig0026478:7644-7663 | None:intergenic | 5.0% |
| !!! | ATTTTATATAATTTTTAGTT+TGG | + | tig0026478:7643-7662 | Msa1429260:intron | 5.0% |
| !!! | TTTTATATAATTTTTAGTTT+GGG | + | tig0026478:7644-7663 | Msa1429260:intron | 5.0% |
| !! | CGAAATGGGTTGTTCCAGCT+CGG | + | tig0026478:6906-6925 | Msa1429260:intron | 50.0% |
| ! | GTTAGAATCTGAGACCGAGC+TGG | - | tig0026478:6923-6942 | None:intergenic | 50.0% |
| CGACGATCAGTGCCTATACT+AGG | - | tig0026478:7737-7756 | None:intergenic | 50.0% | |
| TCGACATGCGCAAATGGAAG+AGG | - | tig0026478:8458-8477 | None:intergenic | 50.0% | |
| GTTCAAGATGCCACTGCAGA+TGG | + | tig0026478:8634-8653 | Msa1429260:CDS | 50.0% | |
| ATGCATGTGGCACATGTGGT+TGG | - | tig0026478:9571-9590 | None:intergenic | 50.0% | |
| CATTCCTTGATCTCCGCAGT+TGG | + | tig0026478:9696-9715 | Msa1429260:CDS | 50.0% | |
| GAAACCAACTGCGGAGATCA+AGG | - | tig0026478:9703-9722 | None:intergenic | 50.0% | |
| TTTGCACAGCTCTGCCTGTT+AGG | - | tig0026478:10230-10249 | None:intergenic | 50.0% | |
| GCAAAAGCTTGCCCAAGTTG+TGG | + | tig0026478:10401-10420 | Msa1429260:CDS | 50.0% | |
| ! | GCCATGAAGTGCCACAACTT+GGG | - | tig0026478:10415-10434 | None:intergenic | 50.0% |
| GTCTCTACGGCTTCTGCTTT+GGG | - | tig0026478:10449-10468 | None:intergenic | 50.0% | |
| AGTCTCTACGGCTTCTGCTT+TGG | - | tig0026478:10450-10469 | None:intergenic | 50.0% | |
| CTGAAGATGACACTGGACCT+AGG | + | tig0026478:10468-10487 | Msa1429260:CDS | 50.0% | |
| !! | TTGTCATGCTGGCTCTCAGT+AGG | - | tig0026478:10596-10615 | None:intergenic | 50.0% |
| ACTGAGAGCCAGCATGACAA+TGG | + | tig0026478:10596-10615 | Msa1429260:CDS | 50.0% | |
| AGAGCCAGCATGACAATGGA+CGG | + | tig0026478:10600-10619 | Msa1429260:CDS | 50.0% | |
| ! | GGTCCGACGGGAATATTTTC+GGG | - | tig0026478:10726-10745 | None:intergenic | 50.0% |
| TGTTGTGGTTGACTGACCTG+TGG | + | tig0026478:10899-10918 | Msa1429260:three_prime_UTR | 50.0% | |
| CGTGTCAATGCCATTGAGGT+AGG | + | tig0026478:10968-10987 | Msa1429260:three_prime_UTR | 50.0% | |
| CATCAATGCCCCTACCTCAA+TGG | - | tig0026478:10981-11000 | None:intergenic | 50.0% | |
| ! | GGGAATCGTAGCGGAAAAGG+AGG | - | tig0026478:6626-6645 | None:intergenic | 55.0% |
| TGCATGTCAGATGGGGTTGC+TGG | + | tig0026478:8225-8244 | Msa1429260:intron | 55.0% | |
| GCATGTCAGATGGGGTTGCT+GGG | + | tig0026478:8226-8245 | Msa1429260:intron | 55.0% | |
| GAGAACTTGCGAGGGACTTG+TGG | + | tig0026478:9630-9649 | Msa1429260:CDS | 55.0% | |
| ACTTGCGAGGGACTTGTGGT+TGG | + | tig0026478:9634-9653 | Msa1429260:CDS | 55.0% | |
| TGGTTGGACATGCCTGCAGA+TGG | + | tig0026478:9650-9669 | Msa1429260:CDS | 55.0% | |
| GCCCAAGTTGTGGCACTTCA+TGG | + | tig0026478:10411-10430 | Msa1429260:CDS | 55.0% | |
| ! | GGCCATGAAGTGCCACAACT+TGG | - | tig0026478:10416-10435 | None:intergenic | 55.0% |
| !! | GTTGCTCGTTGGCTTTGCCT+AGG | - | tig0026478:10488-10507 | None:intergenic | 55.0% |
| AGGCAAAGCCAACGAGCAAC+TGG | + | tig0026478:10488-10507 | Msa1429260:CDS | 55.0% | |
| CGCAGTTGGATGCAGCAATC+AGG | + | tig0026478:10556-10575 | Msa1429260:CDS | 55.0% | |
| GAGCCAGCATGACAATGGAC+GGG | + | tig0026478:10601-10620 | Msa1429260:CDS | 55.0% | |
| ACAATGGACGGGCACGAACA+AGG | + | tig0026478:10612-10631 | Msa1429260:CDS | 55.0% | |
| GCATCGCCTAGCATTCCCTA+GGG | - | tig0026478:10765-10784 | None:intergenic | 55.0% | |
| TGCATCGCCTAGCATTCCCT+AGG | - | tig0026478:10766-10785 | None:intergenic | 55.0% | |
| GTGCCCGTCCATTGTCATGC+TGG | - | tig0026478:10607-10626 | None:intergenic | 60.0% | |
| GACGGGCACGAACAAGGACT+AGG | + | tig0026478:10618-10637 | Msa1429260:CDS | 60.0% | |
| ACAGCGCCCTAGGGAATGCT+AGG | + | tig0026478:10756-10775 | Msa1429260:three_prime_UTR | 60.0% | |
| CTTGTCACGGGGCCCGCTCA+AGG | + | tig0026478:7341-7360 | Msa1429260:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026478 | gene | 6461 | 11058 | 6461 | ID=Msa1429260;Name=Msa1429260 |
| tig0026478 | mRNA | 6461 | 11058 | 6461 | ID=Msa1429260-mRNA-1;Parent=Msa1429260;Name=Msa1429260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.83|0.85|0.85|0.66|0.57|7|310|360 |
| tig0026478 | exon | 6461 | 6464 | 6461 | ID=Msa1429260-mRNA-1:exon:6444;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 7280 | 7411 | 7280 | ID=Msa1429260-mRNA-1:exon:6445;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 7744 | 7940 | 7744 | ID=Msa1429260-mRNA-1:exon:6446;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 8622 | 8702 | 8622 | ID=Msa1429260-mRNA-1:exon:6447;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 9533 | 9772 | 9533 | ID=Msa1429260-mRNA-1:exon:6448;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 10235 | 10312 | 10235 | ID=Msa1429260-mRNA-1:exon:6449;Parent=Msa1429260-mRNA-1 |
| tig0026478 | exon | 10398 | 11058 | 10398 | ID=Msa1429260-mRNA-1:exon:6450;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 6461 | 6464 | 6461 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 7280 | 7411 | 7280 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 7744 | 7940 | 7744 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 8622 | 8702 | 8622 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 9533 | 9772 | 9533 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 10235 | 10312 | 10235 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | CDS | 10398 | 10748 | 10398 | ID=Msa1429260-mRNA-1:cds;Parent=Msa1429260-mRNA-1 |
| tig0026478 | three_prime_UTR | 10749 | 11058 | 10749 | ID=Msa1429260-mRNA-1:three_prime_utr;Parent=Msa1429260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
