AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429670 MtrunA17_Chr8g0360271 87.031 293 25 1 309 588 1 293 0.0 537
Msa1429670 MtrunA17_Chr1g0209621 95.720 257 9 2 1 256 1 256 5.27e-156 449
Msa1429670 MtrunA17_Chr6g0484211 36.330 267 119 8 5 256 1 231 1.94e-23 99.8
Msa1429670 MtrunA17_Chr6g0457701 36.981 265 124 12 14 261 7 245 4.06e-23 99.0
Msa1429670 MtrunA17_Chr3g0110301 67.692 65 8 1 366 417 26 90 6.56e-23 94.0
Msa1429670 MtrunA17_Chr7g0250821 36.398 261 128 11 1 243 1 241 4.64e-22 96.3
Msa1429670 MtrunA17_Chr3g0084111 36.196 163 67 4 427 588 5 131 1.84e-19 85.1
Msa1429670 MtrunA17_Chr8g0391091 33.852 257 121 9 5 256 1 213 7.40e-15 74.3
Msa1429670 MtrunA17_Chr1g0156481 25.424 295 166 12 321 584 18 289 4.59e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429670 AT1G68330.1 42.143 280 130 11 1 262 1 266 1.40e-32 127
Msa1429670 AT1G48780.1 35.317 252 123 11 17 256 9 232 5.22e-17 81.6
Msa1429670 AT1G67050.1 36.331 278 129 12 1 256 1 252 3.83e-14 73.6
Msa1429670 AT3G18300.2 30.605 281 148 12 5 256 2 264 7.11e-13 69.7
Msa1429670 AT3G18300.1 30.605 281 148 12 5 256 2 264 7.11e-13 69.7

Find 97 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTTATCCAAACATTTC+TGG 0.139582 tig0026539:-36162 Msa1429670:CDS
AAAAGCGTTGGAAAAGTTTA+AGG 0.170316 tig0026539:-32445 Msa1429670:CDS
CTGAAGCATAACACCGGATT+TGG 0.286208 tig0026539:-33399 Msa1429670:CDS
AGAACACTGAGAAGCGAAAA+TGG 0.300690 tig0026539:-35057 Msa1429670:CDS
TCATGTGAGAATGAAATTCT+AGG 0.309411 tig0026539:+36508 None:intergenic
AAAACTTTCGTTACAAAATC+AGG 0.317317 tig0026539:+33600 None:intergenic
ATCTTTGCCTTTAGTTGATC+AGG 0.321053 tig0026539:+33459 None:intergenic
CATCTGTGTTTGGTGGGTCT+TGG 0.324547 tig0026539:+32805 None:intergenic
AGCATGTGCTCAAGTTTCTT+TGG 0.329506 tig0026539:-32595 Msa1429670:CDS
AAGAAGAAGCAAGGTGTAGA+TGG 0.344753 tig0026539:+34988 None:intergenic
ATGTGATGTAGACTCCTTCT+TGG 0.355967 tig0026539:+32638 None:intergenic
TTTGAATTGCCAGAAATGTT+TGG 0.364243 tig0026539:+36153 None:intergenic
TTATTTCCAGCAACTTGTAT+TGG 0.385471 tig0026539:+32874 None:intergenic
ATCTGTGTTTGGTGGGTCTT+GGG 0.406768 tig0026539:+32806 None:intergenic
GTTCTCTACAATTCTTATCA+AGG 0.417206 tig0026539:-36081 Msa1429670:CDS
CTAGTATGAAACACACCATT+TGG 0.419336 tig0026539:+33537 None:intergenic
GAAATTCTAGGACTGAATCC+TGG 0.430278 tig0026539:+36520 None:intergenic
TTTCTTTGGTAAGAGCTGAT+AGG 0.431958 tig0026539:-32581 Msa1429670:CDS
CATACGAGCTCATCCCTTCA+AGG 0.437361 tig0026539:+32060 None:intergenic
GTGTGACCAATACAAGTTGC+TGG 0.441596 tig0026539:-32880 Msa1429670:CDS
GACATTTCAGATGATTCCTA+TGG 0.446146 tig0026539:-32468 Msa1429670:CDS
AGAATTCTTGTCTGATGAAA+CGG 0.449955 tig0026539:-36203 Msa1429670:CDS
CATCTAATAAATCTTCGTTA+AGG 0.451032 tig0026539:-35907 Msa1429670:CDS
AACGAGGTTCCTAACCTTGA+AGG 0.452298 tig0026539:-32074 Msa1429670:CDS
GAGCTCATCCCTTCAAGGTT+AGG 0.453636 tig0026539:+32065 None:intergenic
TTGATACGGTCGATTAGTTA+TGG 0.456557 tig0026539:+33482 None:intergenic
TTCAGCATTCCAGCCAAATC+CGG 0.456604 tig0026539:+33386 None:intergenic
CATGATTTAAAGAATTCAAA+TGG 0.457080 tig0026539:-36490 Msa1429670:CDS
CATTGGAACGATAATTCCAT+TGG 0.463732 tig0026539:+36297 None:intergenic
GGCGATGGAGAAAACAAAAT+CGG 0.466776 tig0026539:+36405 None:intergenic
CAATACATCAACAATGGGAA+TGG 0.467040 tig0026539:-32762 Msa1429670:CDS
AAGTGTGTGGCTGCTCTCGA+TGG 0.472530 tig0026539:-32498 Msa1429670:CDS
CATCCACGCTTCCTCTCATT+AGG 0.478275 tig0026539:+32390 None:intergenic
ATAGGAATCATCTTAGAGAT+AGG 0.479459 tig0026539:-31986 Msa1429670:CDS
GCTGCAGAGTTTCAAAAGAA+AGG 0.480351 tig0026539:-32903 Msa1429670:CDS
TTTCGTCATCTGTGTTTGGT+GGG 0.480692 tig0026539:+32799 None:intergenic
CTGATAGGTTAAGAAGGGAT+AGG 0.484536 tig0026539:-32566 Msa1429670:CDS
AGCATAACACCGGATTTGGC+TGG 0.484895 tig0026539:-33395 Msa1429670:CDS
ATGATCAATACATCAACAAT+GGG 0.488653 tig0026539:-32767 Msa1429670:CDS
ATGGTTGATGAAGTTACAAA+AGG 0.489652 tig0026539:-33567 Msa1429670:CDS
TAATCATGTGCATGTTGATA+AGG 0.492675 tig0026539:-32733 Msa1429670:CDS
ACAAAAGGAAATATGCCAAA+TGG 0.496204 tig0026539:-33552 Msa1429670:CDS
ACATTAATGAGACAAAGCTT+TGG 0.497947 tig0026539:-33623 Msa1429670:CDS
ATCATCTTAGAGATAGGATG+TGG 0.498557 tig0026539:-31980 Msa1429670:CDS
CGAAGCTGAAGATCTTCTAC+GGG 0.498707 tig0026539:+36457 None:intergenic
TCAGCACTGAACCGGTTGAA+TGG 0.501094 tig0026539:+36056 None:intergenic
GCTTGAGGTAGATTCAAAAC+AGG 0.503716 tig0026539:+35854 None:intergenic
TTAAGGAAATGTTCAAGTAA+TGG 0.503937 tig0026539:-35890 Msa1429670:CDS
TAAGAGCTGATAGGTTAAGA+AGG 0.504282 tig0026539:-32572 Msa1429670:CDS
CTGCAGAGTTTCAAAAGAAA+GGG 0.506464 tig0026539:-32902 Msa1429670:CDS
TTTAGTTGATCAGGTTGATA+CGG 0.511505 tig0026539:+33468 None:intergenic
CCGAAGCTGAAGATCTTCTA+CGG 0.511670 tig0026539:+36456 None:intergenic
AATACATCAACAATGGGAAT+GGG 0.512612 tig0026539:-32761 Msa1429670:CDS
TTAACAAGGTTATCTGATGA+AGG 0.516699 tig0026539:-32029 Msa1429670:CDS
TTATCAAGGAGCCATTCAAC+CGG 0.523855 tig0026539:-36067 Msa1429670:CDS
CCGTAGAAGATCTTCAGCTT+CGG 0.528927 tig0026539:-36456 Msa1429670:CDS
TGAATAGAACTCACGATACA+TGG 0.530708 tig0026539:+33422 None:intergenic
AAGAGCTGATAGGTTAAGAA+GGG 0.537119 tig0026539:-32571 Msa1429670:CDS
CTAATGAGAGGAAGCGTGGA+TGG 0.541911 tig0026539:-32389 Msa1429670:CDS
GATGATCAATACATCAACAA+TGG 0.551531 tig0026539:-32768 Msa1429670:CDS
CAGAAATGTTTGGATAACAA+TGG 0.553537 tig0026539:+36163 None:intergenic
CACTCGCAGTGAAAAGCGAC+AGG 0.557370 tig0026539:-32673 Msa1429670:CDS
AATCGGAGGTTGAATCTAAG+AGG 0.558079 tig0026539:+36422 None:intergenic
TGATGAAGGTGCAGCTGAGA+TGG 0.559464 tig0026539:-32015 Msa1429670:CDS
AAATTCTAGGACTGAATCCT+GGG 0.562407 tig0026539:+36521 None:intergenic
GTATCAACCTGATCAACTAA+AGG 0.566076 tig0026539:-33466 Msa1429670:CDS
ATCGAGAGCAGCCACACACT+TGG 0.570899 tig0026539:+32500 None:intergenic
CAGCTGAGATGGCAATGGAT+AGG 0.572746 tig0026539:-32004 Msa1429670:CDS
AGTGTGTGGCTGCTCTCGAT+GGG 0.579630 tig0026539:-32497 Msa1429670:CDS
AACTAAAGGCAAAGATGCAT+AGG 0.582306 tig0026539:-33452 Msa1429670:CDS
CGTATGTTGAAAACTTAACA+AGG 0.583345 tig0026539:-32043 Msa1429670:CDS
TGATTCCTATGGAAAAGCGT+TGG 0.584496 tig0026539:-32457 Msa1429670:CDS
AGCGAAAATGGCGATTTCGA+CGG 0.590473 tig0026539:-35045 Msa1429670:CDS
TACATCACATCATATGAATG+AGG 0.591772 tig0026539:-32625 Msa1429670:CDS
TAATGAGAGGAAGCGTGGAT+GGG 0.591816 tig0026539:-32388 Msa1429670:intron
TTGTTCTCTTACCAAGTGTG+TGG 0.604130 tig0026539:-32511 Msa1429670:CDS
TGTAGTGAAACAAACAGCCC+AGG 0.610968 tig0026539:-36538 Msa1429670:CDS
ACGAGGTTCCTAACCTTGAA+GGG 0.611095 tig0026539:-32073 Msa1429670:CDS
ACGCTTCCTCTCATTAGGCA+TGG 0.615135 tig0026539:+32395 None:intergenic
AAAACTTGAGGCGGTGAACG+AGG 0.615754 tig0026539:-32090 Msa1429670:intron
ACCGTGCTTCTTCTTCTCTG+CGG 0.616187 tig0026539:-34945 Msa1429670:CDS
GGTTCATGTGAGATCCAAGA+AGG 0.621915 tig0026539:-32652 Msa1429670:CDS
ACCGCAGAGAAGAAGAAGCA+CGG 0.624330 tig0026539:+34944 None:intergenic
ACTCAACTTATACATCATTG+AGG 0.624896 tig0026539:+33506 None:intergenic
ACTTTAGGAATATATGCTTG+AGG 0.637702 tig0026539:+35839 None:intergenic
ATGCCTAATGAGAGGAAGCG+TGG 0.638032 tig0026539:-32393 Msa1429670:CDS
AGGTGCAGCTGAGATGGCAA+TGG 0.647281 tig0026539:-32009 Msa1429670:CDS
AAGAAGGGATAGGAGTGCAG+AGG 0.647414 tig0026539:-32556 Msa1429670:CDS
GTGTGTTTCATACTAGAACA+TGG 0.658064 tig0026539:-33530 Msa1429670:CDS
GCGGTGGAGAAGAAGAAGCA+AGG 0.660951 tig0026539:+34979 None:intergenic
ACGGTAGAGAAGAAGCGCGG+TGG 0.673948 tig0026539:+34963 None:intergenic
TTATCGCCATGCCTAATGAG+AGG 0.675722 tig0026539:-32401 Msa1429670:CDS
TCATCTTAGAGATAGGATGT+GGG 0.679475 tig0026539:-31979 Msa1429670:CDS
TATTCACTGAAGCATAACAC+CGG 0.679933 tig0026539:-33405 Msa1429670:CDS
GATGGAGAAAACAAAATCGG+AGG 0.703821 tig0026539:+36408 None:intergenic
AGCACGGTAGAGAAGAAGCG+CGG 0.713678 tig0026539:+34960 None:intergenic
GAAGCTGAAGATCTTCTACG+GGG 0.818823 tig0026539:+36458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATATTTTAAAAAT+AGG + tig0026539:33186-33205 None:intergenic 0.0%
!!! ATATTTTCAGTAAAAAAAAA+TGG + tig0026539:33020-33039 None:intergenic 10.0%
!!! ATAACTTTTTTTATTTCCAT+TGG + tig0026539:32196-32215 None:intergenic 15.0%
!!! GATAATAAAAAATGTGATTT+TGG + tig0026539:32948-32967 None:intergenic 15.0%
!! AATTTAAAAAAAGAGACTAA+GGG - tig0026539:33088-33107 Msa1429670:intron 15.0%
!!! ATAATTTTTGAAAAGTGTTT+TGG - tig0026539:33197-33216 Msa1429670:intron 15.0%
!!! TAATTTTTGAAAAGTGTTTT+GGG - tig0026539:33198-33217 Msa1429670:intron 15.0%
!!! TAAGTTTTTTTTATCTAAAC+AGG + tig0026539:33905-33924 None:intergenic 15.0%
!! TTAAATGCTTATTCAATTAA+TGG + tig0026539:34453-34472 None:intergenic 15.0%
!! TGATTATATATATACCATAT+TGG + tig0026539:35338-35357 None:intergenic 15.0%
!! ATGGTATATATATAATCATT+TGG - tig0026539:35340-35359 Msa1429670:intron 15.0%
!! CATGATTTAAAGAATTCAAA+TGG - tig0026539:32025-32044 Msa1429670:CDS 20.0%
!! ATAAAAAAAGTTATCTCCAA+TGG - tig0026539:32202-32221 Msa1429670:intron 20.0%
!! AAAAATTTAGCAGTAACTTT+AGG + tig0026539:32694-32713 None:intergenic 20.0%
!!! AAAGTTACTGCTAAATTTTT+TGG - tig0026539:32694-32713 Msa1429670:CDS 20.0%
!!! TTTTACTGAAAATATGAGTT+TGG - tig0026539:33025-33044 Msa1429670:intron 20.0%
!! GAATTTAAAAAAAGAGACTA+AGG - tig0026539:33087-33106 Msa1429670:intron 20.0%
!!! TTTTAAAAAGTGTTTCAAAC+AGG + tig0026539:33114-33133 None:intergenic 20.0%
!! AAATAAGAAAAGTGAAAACA+CGG - tig0026539:33310-33329 Msa1429670:intron 20.0%
!! AGTAAAAAAATCGCTATATT+AGG + tig0026539:33673-33692 None:intergenic 20.0%
!! AAAAACACAAAATCATAGAA+CGG + tig0026539:33725-33744 None:intergenic 20.0%
!!! TCTATGTAAATTTAAGATTG+CGG - tig0026539:33749-33768 Msa1429670:intron 20.0%
!!! TTGAATTTTACCACTTTTAA+TGG - tig0026539:35210-35229 Msa1429670:intron 20.0%
!!! TGAATTTTACCACTTTTAAT+GGG - tig0026539:35211-35230 Msa1429670:intron 20.0%
!! ATTTATCATAATTCCAACAA+GGG + tig0026539:35315-35334 None:intergenic 20.0%
!! GAATTATGATAAATCCAATA+TGG - tig0026539:35321-35340 Msa1429670:intron 20.0%
!! TATAATCATTTGGTACATAT+TGG - tig0026539:35350-35369 Msa1429670:intron 20.0%
!! AAATACAAACAAACACAATA+TGG + tig0026539:35464-35483 None:intergenic 20.0%
!!! AAAAGTTTAAGGATTTTGAT+TGG - tig0026539:36081-36100 Msa1429670:CDS 20.0%
!! TATACAAATACTAGATAAGT+AGG + tig0026539:36231-36250 None:intergenic 20.0%
!! TACTTATCTAGTATTTGTAT+AGG - tig0026539:36230-36249 Msa1429670:CDS 20.0%
!! TTTAAGCCTCTTTTTCTTTA+CGG + tig0026539:32293-32312 None:intergenic 25.0%
! AAAAAGAAAGACAAAAGCAA+AGG - tig0026539:32503-32522 Msa1429670:CDS 25.0%
! CATCTAATAAATCTTCGTTA+AGG - tig0026539:32608-32627 Msa1429670:CDS 25.0%
! TTAAGGAAATGTTCAAGTAA+TGG - tig0026539:32625-32644 Msa1429670:CDS 25.0%
!!! ACTGCTAAATTTTTTGGATT+TGG - tig0026539:32700-32719 Msa1429670:CDS 25.0%
! AATACATGAACCAAAAACAT+AGG + tig0026539:32829-32848 None:intergenic 25.0%
! TTCATGTATTATATCATGTG+AGG - tig0026539:32839-32858 Msa1429670:CDS 25.0%
!! GTATAAAAAGATAAGTTGAC+AGG - tig0026539:32878-32897 Msa1429670:CDS 25.0%
!!! GTGATTGTTTCTTTTGAATT+TGG + tig0026539:32998-33017 None:intergenic 25.0%
!!! TGTTTTGGGTTTTTTAGTTT+TGG - tig0026539:33212-33231 Msa1429670:intron 25.0%
! AAAAAGTGAAAGAGCTAAAA+TGG - tig0026539:33241-33260 Msa1429670:intron 25.0%
! AAAAGTGAAAGAGCTAAAAT+GGG - tig0026539:33242-33261 Msa1429670:intron 25.0%
! TAAAAAAATGATAATACCCC+TGG + tig0026539:33385-33404 None:intergenic 25.0%
! TGTATCTTTCAATATTCACA+CGG - tig0026539:34162-34181 Msa1429670:intron 25.0%
! AAATATGTAGCCATCTATTA+GGG + tig0026539:34352-34371 None:intergenic 25.0%
!! CAAAAATATTCGTGTTTTCT+CGG - tig0026539:34642-34661 Msa1429670:intron 25.0%
! GACTAAACTGTAAAAATAGA+AGG + tig0026539:34698-34717 None:intergenic 25.0%
!!! ATGCGTATTTTTATGATAGA+TGG - tig0026539:34857-34876 Msa1429670:intron 25.0%
! AAAACTTTCGTTACAAAATC+AGG + tig0026539:34918-34937 None:intergenic 25.0%
!! GAAAGTTTTCATTGACATAA+TGG - tig0026539:34929-34948 Msa1429670:intron 25.0%
! AATCTGGAAAAATTATCTGA+AGG - tig0026539:35177-35196 Msa1429670:intron 25.0%
! GATTTATCATAATTCCAACA+AGG + tig0026539:35316-35335 None:intergenic 25.0%
!!! TTTCATTGATTCTCTTACTT+AGG - tig0026539:35527-35546 Msa1429670:intron 25.0%
! ATACAATGAGAATAACAGAA+AGG + tig0026539:35555-35574 None:intergenic 25.0%
! TGATATGCATATATCATTTC+AGG - tig0026539:35578-35597 Msa1429670:intron 25.0%
! ATGATCAATACATCAACAAT+GGG - tig0026539:35748-35767 Msa1429670:intron 25.0%
! GATATAACCTGTATTTGTTT+AGG - tig0026539:36165-36184 Msa1429670:CDS 25.0%
! TAGAGAAGTAAACAATCATA+AGG + tig0026539:36258-36277 None:intergenic 25.0%
!! TTATTGTTACTTAGTATGAC+AGG - tig0026539:36381-36400 Msa1429670:CDS 25.0%
! TAACTGATATTGAAAACTTG+AGG - tig0026539:36413-36432 Msa1429670:CDS 25.0%
TCATGTGAGAATGAAATTCT+AGG + tig0026539:32010-32029 None:intergenic 30.0%
!! CATTGGAACTATTTTTCCAT+CGG + tig0026539:32179-32198 None:intergenic 30.0%
! GCTGATGAATTTTTCTTCAT+TGG + tig0026539:32238-32257 None:intergenic 30.0%
!!! TTTACGGTAGTTTTTTGAAG+AGG + tig0026539:32277-32296 None:intergenic 30.0%
AAACTACCGTAAAGAAAAAG+AGG - tig0026539:32284-32303 Msa1429670:intron 30.0%
AGAATTCTTGTCTGATGAAA+CGG - tig0026539:32312-32331 Msa1429670:intron 30.0%
CAGAAATGTTTGGATAACAA+TGG + tig0026539:32355-32374 None:intergenic 30.0%
CATTGTTATCCAAACATTTC+TGG - tig0026539:32353-32372 Msa1429670:intron 30.0%
TTTGAATTGCCAGAAATGTT+TGG + tig0026539:32365-32384 None:intergenic 30.0%
GTTCTCTACAATTCTTATCA+AGG - tig0026539:32434-32453 Msa1429670:CDS 30.0%
!!! TTTTGAAGCTCTGTTTGTTT+TGG + tig0026539:32487-32506 None:intergenic 30.0%
! ACTTTAGGAATATATGCTTG+AGG + tig0026539:32679-32698 None:intergenic 30.0%
! TTTGGTTCATTGTTCTGTAA+AGG - tig0026539:32718-32737 Msa1429670:CDS 30.0%
! CTAATCGAATCCTATGTTTT+TGG - tig0026539:32816-32835 Msa1429670:CDS 30.0%
! AAAGATAAGTTGACAGGTTA+AGG - tig0026539:32884-32903 Msa1429670:CDS 30.0%
! AAGATAAGTTGACAGGTTAA+GGG - tig0026539:32885-32904 Msa1429670:CDS 30.0%
! CAAGTATTGTGTTGTAACTT+TGG + tig0026539:33052-33071 None:intergenic 30.0%
AAGTTACAACACAATACTTG+AGG - tig0026539:33052-33071 Msa1429670:intron 30.0%
!!! AAAAGTGTCACTTTTCTCAA+TGG - tig0026539:33335-33354 Msa1429670:intron 30.0%
! TGTAATTATGTTTGAAGTCC+AGG - tig0026539:33364-33383 Msa1429670:intron 30.0%
! GTAATTATGTTTGAAGTCCA+GGG - tig0026539:33365-33384 Msa1429670:intron 30.0%
! TAATTATGTTTGAAGTCCAG+GGG - tig0026539:33366-33385 Msa1429670:intron 30.0%
!! TTAGTTTTTCTGCAGAATGA+GGG + tig0026539:33434-33453 None:intergenic 30.0%
TGTAGATGGAAGAAAAATCA+CGG + tig0026539:33516-33535 None:intergenic 30.0%
GATTGATATTTGCAGCTTAT+AGG - tig0026539:33866-33885 Msa1429670:intron 30.0%
CAAATATGTAGCCATCTATT+AGG + tig0026539:34353-34372 None:intergenic 30.0%
TAGATGGCTACATATTTGTT+TGG - tig0026539:34355-34374 Msa1429670:intron 30.0%
TTTACTAACAAGACAAGAAG+TGG + tig0026539:34563-34582 None:intergenic 30.0%
AGAGAGAGCAAATAAAATCA+AGG + tig0026539:34752-34771 None:intergenic 30.0%
!! TTGATTTTATTTGCTCTCTC+TGG - tig0026539:34751-34770 Msa1429670:intron 30.0%
ACATTAATGAGACAAAGCTT+TGG - tig0026539:34892-34911 Msa1429670:intron 30.0%
!! ATGGTTGATGAAGTTACAAA+AGG - tig0026539:34948-34967 Msa1429670:CDS 30.0%
ACAAAAGGAAATATGCCAAA+TGG - tig0026539:34963-34982 Msa1429670:CDS 30.0%
ACTCAACTTATACATCATTG+AGG + tig0026539:35012-35031 None:intergenic 30.0%
!! TTTAGTTGATCAGGTTGATA+CGG + tig0026539:35050-35069 None:intergenic 30.0%
GGAAAAATTATCTGAAGGTA+TGG - tig0026539:35182-35201 Msa1429670:intron 30.0%
ATCATATCACCCATTAAAAG+TGG + tig0026539:35223-35242 None:intergenic 30.0%
TTAGAGCAATGAACAAAACT+GGG + tig0026539:35395-35414 None:intergenic 30.0%
! TTTAGAGCAATGAACAAAAC+TGG + tig0026539:35396-35415 None:intergenic 30.0%
CAAGATTCATGATTCTAGAT+AGG + tig0026539:35489-35508 None:intergenic 30.0%
TTATTTCCAGCAACTTGTAT+TGG + tig0026539:35644-35663 None:intergenic 30.0%
TTCAACAAAAACAATGCAAC+TGG - tig0026539:35666-35685 Msa1429670:intron 30.0%
GATGATCAATACATCAACAA+TGG - tig0026539:35747-35766 Msa1429670:intron 30.0%
AATACATCAACAATGGGAAT+GGG - tig0026539:35754-35773 Msa1429670:intron 30.0%
TAATCATGTGCATGTTGATA+AGG - tig0026539:35782-35801 Msa1429670:intron 30.0%
TACATCACATCATATGAATG+AGG - tig0026539:35890-35909 Msa1429670:CDS 30.0%
!! AAAAGCGTTGGAAAAGTTTA+AGG - tig0026539:36070-36089 Msa1429670:CDS 30.0%
!!! AGTTTAAGGATTTTGATTGG+AGG - tig0026539:36084-36103 Msa1429670:CDS 30.0%
!!! GTTTAAGGATTTTGATTGGA+GGG - tig0026539:36085-36104 Msa1429670:CDS 30.0%
ACTAGAACCTAAACAAATAC+AGG + tig0026539:36175-36194 None:intergenic 30.0%
CTCGATAAGAGGAAAATAAA+AGG + tig0026539:36344-36363 None:intergenic 30.0%
CGTATGTTGAAAACTTAACA+AGG - tig0026539:36472-36491 Msa1429670:CDS 30.0%
TTAACAAGGTTATCTGATGA+AGG - tig0026539:36486-36505 Msa1429670:CDS 30.0%
ATAGGAATCATCTTAGAGAT+AGG - tig0026539:36529-36548 Msa1429670:CDS 30.0%
!! AAATTCTAGGACTGAATCCT+GGG + tig0026539:31997-32016 None:intergenic 35.0%
CGATGGAAAAATAGTTCCAA+TGG - tig0026539:32177-32196 Msa1429670:intron 35.0%
CATTGGAACGATAATTCCAT+TGG + tig0026539:32221-32240 None:intergenic 35.0%
GTGAGGCTAACTAATAATTC+TGG - tig0026539:32856-32875 Msa1429670:CDS 35.0%
CACAATACTTGAGGATCAAA+TGG - tig0026539:33061-33080 Msa1429670:intron 35.0%
!!! GTTAGTTTTTCTGCAGAATG+AGG + tig0026539:33435-33454 None:intergenic 35.0%
ATATTTGCAGCTTATAGGTC+TGG - tig0026539:33871-33890 Msa1429670:intron 35.0%
TTCAATATTCACACGGATAC+CGG - tig0026539:34169-34188 Msa1429670:intron 35.0%
TGCACACAAGAACTAGAAAA+AGG + tig0026539:34315-34334 None:intergenic 35.0%
TATGCTTGTTCCCTAATAGA+TGG - tig0026539:34339-34358 Msa1429670:intron 35.0%
GTTTGAGCTCAATACTTCAA+AGG + tig0026539:34498-34517 None:intergenic 35.0%
TTTACTTGTACAACCCAGTT+TGG + tig0026539:34528-34547 None:intergenic 35.0%
GGTTGTACAAGTAAAGAACA+GGG - tig0026539:34533-34552 Msa1429670:intron 35.0%
GTTGTACAAGTAAAGAACAG+GGG - tig0026539:34534-34553 Msa1429670:intron 35.0%
! TCTTGTCTTGTTAGTAAAGC+TGG - tig0026539:34565-34584 Msa1429670:intron 35.0%
CAAGACTTGGCACAAAAATA+AGG + tig0026539:34606-34625 None:intergenic 35.0%
TATCTGTCAGATACAAGACT+TGG + tig0026539:34619-34638 None:intergenic 35.0%
CTAGTATGAAACACACCATT+TGG + tig0026539:34981-35000 None:intergenic 35.0%
GTGTGTTTCATACTAGAACA+TGG - tig0026539:34985-35004 Msa1429670:CDS 35.0%
! TTGATACGGTCGATTAGTTA+TGG + tig0026539:35036-35055 None:intergenic 35.0%
GTATCAACCTGATCAACTAA+AGG - tig0026539:35049-35068 Msa1429670:CDS 35.0%
ATCTTTGCCTTTAGTTGATC+AGG + tig0026539:35059-35078 None:intergenic 35.0%
AACTAAAGGCAAAGATGCAT+AGG - tig0026539:35063-35082 Msa1429670:CDS 35.0%
TGAATAGAACTCACGATACA+TGG + tig0026539:35096-35115 None:intergenic 35.0%
TATTCACTGAAGCATAACAC+CGG - tig0026539:35110-35129 Msa1429670:intron 35.0%
TCATGCTTCTATTAGTGACA+TGG - tig0026539:35268-35287 Msa1429670:intron 35.0%
TCACATTTCAATACCCTTGT+TGG - tig0026539:35299-35318 Msa1429670:intron 35.0%
!!! TTTTGAAACTCTGCAGCTTT+GGG + tig0026539:35609-35628 None:intergenic 35.0%
CTGCAGAGTTTCAAAAGAAA+GGG - tig0026539:35613-35632 Msa1429670:intron 35.0%
CAATACATCAACAATGGGAA+TGG - tig0026539:35753-35772 Msa1429670:intron 35.0%
TTTCTTTGGTAAGAGCTGAT+AGG - tig0026539:35934-35953 Msa1429670:CDS 35.0%
TAAGAGCTGATAGGTTAAGA+AGG - tig0026539:35943-35962 Msa1429670:CDS 35.0%
AAGAGCTGATAGGTTAAGAA+GGG - tig0026539:35944-35963 Msa1429670:CDS 35.0%
GACATTTCAGATGATTCCTA+TGG - tig0026539:36047-36066 Msa1429670:CDS 35.0%
AAAACACGATACTCGATAAG+AGG + tig0026539:36355-36374 None:intergenic 35.0%
CTGATATTGAAAACTTGAGG+CGG - tig0026539:36416-36435 Msa1429670:CDS 35.0%
ATCATCTTAGAGATAGGATG+TGG - tig0026539:36535-36554 Msa1429670:CDS 35.0%
TCATCTTAGAGATAGGATGT+GGG - tig0026539:36536-36555 Msa1429670:CDS 35.0%
!! GAAATTCTAGGACTGAATCC+TGG + tig0026539:31998-32017 None:intergenic 40.0%
AATCGGAGGTTGAATCTAAG+AGG + tig0026539:32096-32115 None:intergenic 40.0%
GATGGAGAAAACAAAATCGG+AGG + tig0026539:32110-32129 None:intergenic 40.0%
GGCGATGGAGAAAACAAAAT+CGG + tig0026539:32113-32132 None:intergenic 40.0%
!! TTTGTTTTCTCCATCGCCAA+TGG - tig0026539:32115-32134 Msa1429670:intron 40.0%
GAACTGCTGAGAAAAACCAT+TGG + tig0026539:32134-32153 None:intergenic 40.0%
!!! GCTGATGAACTTTTTTCCGA+TGG - tig0026539:32160-32179 Msa1429670:intron 40.0%
TTATCAAGGAGCCATTCAAC+CGG - tig0026539:32448-32467 Msa1429670:CDS 40.0%
!! TTTTGGATTCAGCACTGAAC+CGG + tig0026539:32470-32489 None:intergenic 40.0%
GCTTGAGGTAGATTCAAAAC+AGG + tig0026539:32664-32683 None:intergenic 40.0%
AGAACACTGAGAAGCGAAAA+TGG - tig0026539:33458-33477 Msa1429670:CDS 40.0%
AGATGGAAGAAAAATCACGG+CGG + tig0026539:33513-33532 None:intergenic 40.0%
AAGAAGAAGCAAGGTGTAGA+TGG + tig0026539:33530-33549 None:intergenic 40.0%
!!! TTCTTCTCTGCGGTTTTTTC+AGG - tig0026539:33580-33599 Msa1429670:CDS 40.0%
TCAAACAGCTTAGCCAAACT+GGG - tig0026539:34512-34531 Msa1429670:intron 40.0%
GGGTTGTACAAGTAAAGAAC+AGG - tig0026539:34532-34551 Msa1429670:intron 40.0%
GCACAAAAATAAGGCTACCT+AGG + tig0026539:34597-34616 None:intergenic 40.0%
!!! CTCTCTGGTGCTACTTTTAT+AGG - tig0026539:34766-34785 Msa1429670:intron 40.0%
GTTACTGCAACTGAAGAATC+TGG - tig0026539:35161-35180 Msa1429670:intron 40.0%
!!! CTTTTGAAACTCTGCAGCTT+TGG + tig0026539:35610-35629 None:intergenic 40.0%
GCTGCAGAGTTTCAAAAGAA+AGG - tig0026539:35612-35631 Msa1429670:intron 40.0%
TTTCGTCATCTGTGTTTGGT+GGG + tig0026539:35719-35738 None:intergenic 40.0%
! TTTTCGTCATCTGTGTTTGG+TGG + tig0026539:35720-35739 None:intergenic 40.0%
! TCGTTTTCGTCATCTGTGTT+TGG + tig0026539:35723-35742 None:intergenic 40.0%
ATGTGATGTAGACTCCTTCT+TGG + tig0026539:35880-35899 None:intergenic 40.0%
AGCATGTGCTCAAGTTTCTT+TGG - tig0026539:35920-35939 Msa1429670:CDS 40.0%
CTGATAGGTTAAGAAGGGAT+AGG - tig0026539:35949-35968 Msa1429670:CDS 40.0%
TTGTTCTCTTACCAAGTGTG+TGG - tig0026539:36004-36023 Msa1429670:CDS 40.0%
! TGATTCCTATGGAAAAGCGT+TGG - tig0026539:36058-36077 Msa1429670:CDS 40.0%
! CTTTTCCAACGCTTTTCCAT+AGG + tig0026539:36066-36085 None:intergenic 40.0%
TGTAGTGAAACAAACAGCCC+AGG - tig0026539:31977-31996 Msa1429670:CDS 45.0%
GAAGCTGAAGATCTTCTACG+GGG + tig0026539:32060-32079 None:intergenic 45.0%
CGAAGCTGAAGATCTTCTAC+GGG + tig0026539:32061-32080 None:intergenic 45.0%
CCGAAGCTGAAGATCTTCTA+CGG + tig0026539:32062-32081 None:intergenic 45.0%
CCGTAGAAGATCTTCAGCTT+CGG - tig0026539:32059-32078 Msa1429670:CDS 45.0%
CTGAGAAAAACCATTGGCGA+TGG + tig0026539:32128-32147 None:intergenic 45.0%
AGCGAAAATGGCGATTTCGA+CGG - tig0026539:33470-33489 Msa1429670:CDS 45.0%
AGAAAAATCACGGCGGAGAT+CGG + tig0026539:33506-33525 None:intergenic 45.0%
!! CCGTTGACGAGTTTTGTATC+CGG + tig0026539:34191-34210 None:intergenic 45.0%
CCGGATACAAAACTCGTCAA+CGG - tig0026539:34188-34207 Msa1429670:intron 45.0%
CTCAAACAGCTTAGCCAAAC+TGG - tig0026539:34511-34530 Msa1429670:intron 45.0%
AGTAAAGCTGGACTGAACCT+AGG - tig0026539:34577-34596 Msa1429670:intron 45.0%
CTGAAGCATAACACCGGATT+TGG - tig0026539:35116-35135 Msa1429670:intron 45.0%
TTCAGCATTCCAGCCAAATC+CGG + tig0026539:35132-35151 None:intergenic 45.0%
GTGTGACCAATACAAGTTGC+TGG - tig0026539:35635-35654 Msa1429670:intron 45.0%
! ATCTGTGTTTGGTGGGTCTT+GGG + tig0026539:35712-35731 None:intergenic 45.0%
GGTTCATGTGAGATCCAAGA+AGG - tig0026539:35863-35882 Msa1429670:CDS 45.0%
TTATCGCCATGCCTAATGAG+AGG - tig0026539:36114-36133 Msa1429670:CDS 45.0%
! TAATGAGAGGAAGCGTGGAT+GGG - tig0026539:36127-36146 Msa1429670:CDS 45.0%
AACGAGGTTCCTAACCTTGA+AGG - tig0026539:36441-36460 Msa1429670:CDS 45.0%
ACGAGGTTCCTAACCTTGAA+GGG - tig0026539:36442-36461 Msa1429670:CDS 45.0%
!!! ATTTTTTTATCAAAAAAATT+TGG - tig0026539:33396-33415 Msa1429670:CDS 5.0%
! TCAGCACTGAACCGGTTGAA+TGG + tig0026539:32462-32481 None:intergenic 50.0%
ACCGTGCTTCTTCTTCTCTG+CGG - tig0026539:33570-33589 Msa1429670:CDS 50.0%
ACCGCAGAGAAGAAGAAGCA+CGG + tig0026539:33574-33593 None:intergenic 50.0%
AGCATAACACCGGATTTGGC+TGG - tig0026539:35120-35139 Msa1429670:intron 50.0%
! CATCTGTGTTTGGTGGGTCT+TGG + tig0026539:35713-35732 None:intergenic 50.0%
! AAGAAGGGATAGGAGTGCAG+AGG - tig0026539:35959-35978 Msa1429670:CDS 50.0%
ACGCTTCCTCTCATTAGGCA+TGG + tig0026539:36123-36142 None:intergenic 50.0%
ATGCCTAATGAGAGGAAGCG+TGG - tig0026539:36122-36141 Msa1429670:CDS 50.0%
CATCCACGCTTCCTCTCATT+AGG + tig0026539:36128-36147 None:intergenic 50.0%
! CTAATGAGAGGAAGCGTGGA+TGG - tig0026539:36126-36145 Msa1429670:CDS 50.0%
GGATGGGTACTTAGGCTCTA+AGG - tig0026539:36143-36162 Msa1429670:CDS 50.0%
AAAACTTGAGGCGGTGAACG+AGG - tig0026539:36425-36444 Msa1429670:CDS 50.0%
GAGCTCATCCCTTCAAGGTT+AGG + tig0026539:36453-36472 None:intergenic 50.0%
CATACGAGCTCATCCCTTCA+AGG + tig0026539:36458-36477 None:intergenic 50.0%
! TGATGAAGGTGCAGCTGAGA+TGG - tig0026539:36500-36519 Msa1429670:CDS 50.0%
CAGCTGAGATGGCAATGGAT+AGG - tig0026539:36511-36530 Msa1429670:CDS 50.0%
GCGGTGGAGAAGAAGAAGCA+AGG + tig0026539:33539-33558 None:intergenic 55.0%
AGCACGGTAGAGAAGAAGCG+CGG + tig0026539:33558-33577 None:intergenic 55.0%
CACTCGCAGTGAAAAGCGAC+AGG - tig0026539:35842-35861 Msa1429670:CDS 55.0%
ATCGAGAGCAGCCACACACT+TGG + tig0026539:36018-36037 None:intergenic 55.0%
AAGTGTGTGGCTGCTCTCGA+TGG - tig0026539:36017-36036 Msa1429670:CDS 55.0%
AGTGTGTGGCTGCTCTCGAT+GGG - tig0026539:36018-36037 Msa1429670:CDS 55.0%
! GGAAGCGTGGATGGGTACTT+AGG - tig0026539:36135-36154 Msa1429670:CDS 55.0%
AGGTGCAGCTGAGATGGCAA+TGG - tig0026539:36506-36525 Msa1429670:CDS 55.0%
! ACGGTAGAGAAGAAGCGCGG+TGG + tig0026539:33555-33574 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0026539 gene 31962 36575 31962 ID=Msa1429670;Name=Msa1429670
tig0026539 mRNA 31962 36575 31962 ID=Msa1429670-mRNA-1;Parent=Msa1429670;Name=Msa1429670-mRNA-1;_AED=0.30;_eAED=0.35;_QI=0|0.25|0|1|1|1|5|0|632
tig0026539 exon 35809 36575 35809 ID=Msa1429670-mRNA-1:exon:6665;Parent=Msa1429670-mRNA-1
tig0026539 exon 34936 35092 34936 ID=Msa1429670-mRNA-1:exon:6664;Parent=Msa1429670-mRNA-1
tig0026539 exon 33377 33661 33377 ID=Msa1429670-mRNA-1:exon:6663;Parent=Msa1429670-mRNA-1
tig0026539 exon 32389 32937 32389 ID=Msa1429670-mRNA-1:exon:6662;Parent=Msa1429670-mRNA-1
tig0026539 exon 31962 32102 31962 ID=Msa1429670-mRNA-1:exon:6661;Parent=Msa1429670-mRNA-1
tig0026539 CDS 35809 36575 35809 ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1
tig0026539 CDS 34936 35092 34936 ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1
tig0026539 CDS 33377 33661 33377 ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1
tig0026539 CDS 32389 32937 32389 ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1
tig0026539 CDS 31962 32102 31962 ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1
Gene Sequence

>Msa1429670

ATGGCAATTGAAGTGTGTAGTGAAACAAACAGCCCAGGATTCAGTCCTAGAATTTCATTCTCACATGATTTAAAGAATTCAAATGGTTCAGAAATCCCCGTAGAAGATCTTCAGCTTCGGTCAGATTTACACCTCTTAGATTCAACCTCCGATTTTGTTTTCTCCATCGCCAATGGTTTTTCTCAGCAGTTCTCTTCAGCTGATGAACTTTTTTCCGATGGAAAAATAGTTCCAATGGAAATAAAAAAAGTTATCTCCAATGGAATTATCGTTCCAATGAAGAAAAATTCATCAGCTAATGAATTCTTCGAGCCTCTTCAAAAAACTACCGTAAAGAAAAAGAGGCTTAAAGAATTCTTGTCTGATGAAACGGACGACGAAGAAGAGAAGCCATTGTTATCCAAACATTTCTGGCAATTCAAAAGAAGCAGCAGTTTGAATTTCGATACAGCTCGTCAAAATAAATTGATTCGTTCTCTACAATTCTTATCAAGGAGCCATTCAACCGGTTCAGTGCTGAATCCAAAACAAACAGAGCTTCAAAAAGAAAGACAAAAGCAAAGGTTGCAGAAACAATCTTCTGTTTCAAGTAGTAGAAGATCTTCTTCGTCTTCTTCAACTTCAAGTACATATTATTTCTATAATTCATCTAATAAATCTTCGTTAAGGAAATGTTCAAGTAATGGTGTTAGAATTAGTCCTGTTTTGAATCTACCTCAAGCATATATTCCTAAAGTTACTGCTAAATTTTTTGGATTTGGTTCATTAAAAACTAACGTGAGAACACTGAGAAGCGAAAATGGCGATTTCGACGGCGATTCTTCTCCGATCTCCGCCGTGATTTTTCTTCCATCTACACCTTGCTTCTTCTTCTCCACCGCGCTTCTTCTCTACCGTGCTTCTTCTTCTCTGCGGTTTTTTCAGATGGCAACTAATGTTGACATTAATGAGACAAAGCTTTGGCCTGATTTTGTAACGAAAGTTTTCATTGACATAATGGTTGATGAAGTTACAAAAGGAAATATGCCAAATGGTGTGTTTCATACTAGAACATGGTCCTCAATGATGTATAAGTTGAGTACCATAACTAATCGACCGTATCAACCTGATCAACTAAAGGCAAAGATGCATAGGTTGCGAGCCATGTATCGTGAGTTCTATTCACTGAAGCATAACACCGGATTTGGCTGGAATGCTGAAACAAACGCTGTACATCCCAAAGCTGCAGAGTTTCAAAAGAAAGGGTGTGACCAATACAAGTTGCTGGAAATAATATTCAACAAAAACAATGCAACTGGAGTACTTCATCATTCATCTACCCAAGACCCACCAAACACAGATGACGAAAACGAGCTTGATGATCAATACATCAACAATGGGAATGGGAGTGCTAATCATGTGCATGTTGATAAGGATAGTTCATATGATGATCTACATGAAGTTGAGCACATCACTCGCAGTGAAAAGCGACAGGTTCATGTGAGATCCAAGAAGGAGTCTACATCACATCATATGAATGAGGCACTTGCAGCATGTGCTCAAGTTTCTTTGGTAAGAGCTGATAGGTTAAGAAGGGATAGGAGTGCAGAGGCTACTTCGCGTGTAACTTCAGATTGTTCTCTTACCAAGTGTGTGGCTGCTCTCGATGGGCTAGAAGACATTTCAGATGATTCCTATGGAAAAGCGTTGGAAAAGTTTAAGGATTTTGATTGGAGGGAAATGTTTATCGCCATGCCTAATGAGAGGAAGCGTGGATGGGCGGTGAACGAGGTTCCTAACCTTGAAGGGATGAGCTCGTATGTTGAAAACTTAACAAGGTTATCTGATGAAGGTGCAGCTGAGATGGCAATGGATAGGAATCATCTTAGAGATAGGATGTGGGTACATCGTCATAATTAA

Protein sequence

>Msa1429670

MAIEVCSETNSPGFSPRISFSHDLKNSNGSEIPVEDLQLRSDLHLLDSTSDFVFSIANGFSQQFSSADELFSDGKIVPMEIKKVISNGIIVPMKKNSSANEFFEPLQKTTVKKKRLKEFLSDETDDEEEKPLLSKHFWQFKRSSSLNFDTARQNKLIRSLQFLSRSHSTGSVLNPKQTELQKERQKQRLQKQSSVSSSRRSSSSSSTSSTYYFYNSSNKSSLRKCSSNGVRISPVLNLPQAYIPKVTAKFFGFGSLKTNVRTLRSENGDFDGDSSPISAVIFLPSTPCFFFSTALLLYRASSSLRFFQMATNVDINETKLWPDFVTKVFIDIMVDEVTKGNMPNGVFHTRTWSSMMYKLSTITNRPYQPDQLKAKMHRLRAMYREFYSLKHNTGFGWNAETNAVHPKAAEFQKKGCDQYKLLEIIFNKNNATGVLHHSSTQDPPNTDDENELDDQYINNGNGSANHVHVDKDSSYDDLHEVEHITRSEKRQVHVRSKKESTSHHMNEALAACAQVSLVRADRLRRDRSAEATSRVTSDCSLTKCVAALDGLEDISDDSYGKALEKFKDFDWREMFIAMPNERKRGWAVNEVPNLEGMSSYVENLTRLSDEGAAEMAMDRNHLRDRMWVHRHN*