Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1429670 | XP_039684367.1 | 88.435 | 294 | 21 | 1 | 308 | 588 | 50 | 343 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1429670 | A0A396GQG1 | 87.031 | 293 | 25 | 1 | 309 | 588 | 1 | 293 | 0.0 | 537 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0830300 | Msa1429670 | 0.943861 | 5.595601e-103 | -8.615850e-47 |
Msa0186770 | Msa1429670 | 0.835683 | 1.455085e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1429670 | MtrunA17_Chr8g0360271 | 87.031 | 293 | 25 | 1 | 309 | 588 | 1 | 293 | 0.0 | 537 |
Msa1429670 | MtrunA17_Chr1g0209621 | 95.720 | 257 | 9 | 2 | 1 | 256 | 1 | 256 | 5.27e-156 | 449 |
Msa1429670 | MtrunA17_Chr6g0484211 | 36.330 | 267 | 119 | 8 | 5 | 256 | 1 | 231 | 1.94e-23 | 99.8 |
Msa1429670 | MtrunA17_Chr6g0457701 | 36.981 | 265 | 124 | 12 | 14 | 261 | 7 | 245 | 4.06e-23 | 99.0 |
Msa1429670 | MtrunA17_Chr3g0110301 | 67.692 | 65 | 8 | 1 | 366 | 417 | 26 | 90 | 6.56e-23 | 94.0 |
Msa1429670 | MtrunA17_Chr7g0250821 | 36.398 | 261 | 128 | 11 | 1 | 243 | 1 | 241 | 4.64e-22 | 96.3 |
Msa1429670 | MtrunA17_Chr3g0084111 | 36.196 | 163 | 67 | 4 | 427 | 588 | 5 | 131 | 1.84e-19 | 85.1 |
Msa1429670 | MtrunA17_Chr8g0391091 | 33.852 | 257 | 121 | 9 | 5 | 256 | 1 | 213 | 7.40e-15 | 74.3 |
Msa1429670 | MtrunA17_Chr1g0156481 | 25.424 | 295 | 166 | 12 | 321 | 584 | 18 | 289 | 4.59e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1429670 | AT1G68330.1 | 42.143 | 280 | 130 | 11 | 1 | 262 | 1 | 266 | 1.40e-32 | 127 |
Msa1429670 | AT1G48780.1 | 35.317 | 252 | 123 | 11 | 17 | 256 | 9 | 232 | 5.22e-17 | 81.6 |
Msa1429670 | AT1G67050.1 | 36.331 | 278 | 129 | 12 | 1 | 256 | 1 | 252 | 3.83e-14 | 73.6 |
Msa1429670 | AT3G18300.2 | 30.605 | 281 | 148 | 12 | 5 | 256 | 2 | 264 | 7.11e-13 | 69.7 |
Msa1429670 | AT3G18300.1 | 30.605 | 281 | 148 | 12 | 5 | 256 | 2 | 264 | 7.11e-13 | 69.7 |
Find 97 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGTTATCCAAACATTTC+TGG | 0.139582 | tig0026539:-36162 | Msa1429670:CDS |
AAAAGCGTTGGAAAAGTTTA+AGG | 0.170316 | tig0026539:-32445 | Msa1429670:CDS |
CTGAAGCATAACACCGGATT+TGG | 0.286208 | tig0026539:-33399 | Msa1429670:CDS |
AGAACACTGAGAAGCGAAAA+TGG | 0.300690 | tig0026539:-35057 | Msa1429670:CDS |
TCATGTGAGAATGAAATTCT+AGG | 0.309411 | tig0026539:+36508 | None:intergenic |
AAAACTTTCGTTACAAAATC+AGG | 0.317317 | tig0026539:+33600 | None:intergenic |
ATCTTTGCCTTTAGTTGATC+AGG | 0.321053 | tig0026539:+33459 | None:intergenic |
CATCTGTGTTTGGTGGGTCT+TGG | 0.324547 | tig0026539:+32805 | None:intergenic |
AGCATGTGCTCAAGTTTCTT+TGG | 0.329506 | tig0026539:-32595 | Msa1429670:CDS |
AAGAAGAAGCAAGGTGTAGA+TGG | 0.344753 | tig0026539:+34988 | None:intergenic |
ATGTGATGTAGACTCCTTCT+TGG | 0.355967 | tig0026539:+32638 | None:intergenic |
TTTGAATTGCCAGAAATGTT+TGG | 0.364243 | tig0026539:+36153 | None:intergenic |
TTATTTCCAGCAACTTGTAT+TGG | 0.385471 | tig0026539:+32874 | None:intergenic |
ATCTGTGTTTGGTGGGTCTT+GGG | 0.406768 | tig0026539:+32806 | None:intergenic |
GTTCTCTACAATTCTTATCA+AGG | 0.417206 | tig0026539:-36081 | Msa1429670:CDS |
CTAGTATGAAACACACCATT+TGG | 0.419336 | tig0026539:+33537 | None:intergenic |
GAAATTCTAGGACTGAATCC+TGG | 0.430278 | tig0026539:+36520 | None:intergenic |
TTTCTTTGGTAAGAGCTGAT+AGG | 0.431958 | tig0026539:-32581 | Msa1429670:CDS |
CATACGAGCTCATCCCTTCA+AGG | 0.437361 | tig0026539:+32060 | None:intergenic |
GTGTGACCAATACAAGTTGC+TGG | 0.441596 | tig0026539:-32880 | Msa1429670:CDS |
GACATTTCAGATGATTCCTA+TGG | 0.446146 | tig0026539:-32468 | Msa1429670:CDS |
AGAATTCTTGTCTGATGAAA+CGG | 0.449955 | tig0026539:-36203 | Msa1429670:CDS |
CATCTAATAAATCTTCGTTA+AGG | 0.451032 | tig0026539:-35907 | Msa1429670:CDS |
AACGAGGTTCCTAACCTTGA+AGG | 0.452298 | tig0026539:-32074 | Msa1429670:CDS |
GAGCTCATCCCTTCAAGGTT+AGG | 0.453636 | tig0026539:+32065 | None:intergenic |
TTGATACGGTCGATTAGTTA+TGG | 0.456557 | tig0026539:+33482 | None:intergenic |
TTCAGCATTCCAGCCAAATC+CGG | 0.456604 | tig0026539:+33386 | None:intergenic |
CATGATTTAAAGAATTCAAA+TGG | 0.457080 | tig0026539:-36490 | Msa1429670:CDS |
CATTGGAACGATAATTCCAT+TGG | 0.463732 | tig0026539:+36297 | None:intergenic |
GGCGATGGAGAAAACAAAAT+CGG | 0.466776 | tig0026539:+36405 | None:intergenic |
CAATACATCAACAATGGGAA+TGG | 0.467040 | tig0026539:-32762 | Msa1429670:CDS |
AAGTGTGTGGCTGCTCTCGA+TGG | 0.472530 | tig0026539:-32498 | Msa1429670:CDS |
CATCCACGCTTCCTCTCATT+AGG | 0.478275 | tig0026539:+32390 | None:intergenic |
ATAGGAATCATCTTAGAGAT+AGG | 0.479459 | tig0026539:-31986 | Msa1429670:CDS |
GCTGCAGAGTTTCAAAAGAA+AGG | 0.480351 | tig0026539:-32903 | Msa1429670:CDS |
TTTCGTCATCTGTGTTTGGT+GGG | 0.480692 | tig0026539:+32799 | None:intergenic |
CTGATAGGTTAAGAAGGGAT+AGG | 0.484536 | tig0026539:-32566 | Msa1429670:CDS |
AGCATAACACCGGATTTGGC+TGG | 0.484895 | tig0026539:-33395 | Msa1429670:CDS |
ATGATCAATACATCAACAAT+GGG | 0.488653 | tig0026539:-32767 | Msa1429670:CDS |
ATGGTTGATGAAGTTACAAA+AGG | 0.489652 | tig0026539:-33567 | Msa1429670:CDS |
TAATCATGTGCATGTTGATA+AGG | 0.492675 | tig0026539:-32733 | Msa1429670:CDS |
ACAAAAGGAAATATGCCAAA+TGG | 0.496204 | tig0026539:-33552 | Msa1429670:CDS |
ACATTAATGAGACAAAGCTT+TGG | 0.497947 | tig0026539:-33623 | Msa1429670:CDS |
ATCATCTTAGAGATAGGATG+TGG | 0.498557 | tig0026539:-31980 | Msa1429670:CDS |
CGAAGCTGAAGATCTTCTAC+GGG | 0.498707 | tig0026539:+36457 | None:intergenic |
TCAGCACTGAACCGGTTGAA+TGG | 0.501094 | tig0026539:+36056 | None:intergenic |
GCTTGAGGTAGATTCAAAAC+AGG | 0.503716 | tig0026539:+35854 | None:intergenic |
TTAAGGAAATGTTCAAGTAA+TGG | 0.503937 | tig0026539:-35890 | Msa1429670:CDS |
TAAGAGCTGATAGGTTAAGA+AGG | 0.504282 | tig0026539:-32572 | Msa1429670:CDS |
CTGCAGAGTTTCAAAAGAAA+GGG | 0.506464 | tig0026539:-32902 | Msa1429670:CDS |
TTTAGTTGATCAGGTTGATA+CGG | 0.511505 | tig0026539:+33468 | None:intergenic |
CCGAAGCTGAAGATCTTCTA+CGG | 0.511670 | tig0026539:+36456 | None:intergenic |
AATACATCAACAATGGGAAT+GGG | 0.512612 | tig0026539:-32761 | Msa1429670:CDS |
TTAACAAGGTTATCTGATGA+AGG | 0.516699 | tig0026539:-32029 | Msa1429670:CDS |
TTATCAAGGAGCCATTCAAC+CGG | 0.523855 | tig0026539:-36067 | Msa1429670:CDS |
CCGTAGAAGATCTTCAGCTT+CGG | 0.528927 | tig0026539:-36456 | Msa1429670:CDS |
TGAATAGAACTCACGATACA+TGG | 0.530708 | tig0026539:+33422 | None:intergenic |
AAGAGCTGATAGGTTAAGAA+GGG | 0.537119 | tig0026539:-32571 | Msa1429670:CDS |
CTAATGAGAGGAAGCGTGGA+TGG | 0.541911 | tig0026539:-32389 | Msa1429670:CDS |
GATGATCAATACATCAACAA+TGG | 0.551531 | tig0026539:-32768 | Msa1429670:CDS |
CAGAAATGTTTGGATAACAA+TGG | 0.553537 | tig0026539:+36163 | None:intergenic |
CACTCGCAGTGAAAAGCGAC+AGG | 0.557370 | tig0026539:-32673 | Msa1429670:CDS |
AATCGGAGGTTGAATCTAAG+AGG | 0.558079 | tig0026539:+36422 | None:intergenic |
TGATGAAGGTGCAGCTGAGA+TGG | 0.559464 | tig0026539:-32015 | Msa1429670:CDS |
AAATTCTAGGACTGAATCCT+GGG | 0.562407 | tig0026539:+36521 | None:intergenic |
GTATCAACCTGATCAACTAA+AGG | 0.566076 | tig0026539:-33466 | Msa1429670:CDS |
ATCGAGAGCAGCCACACACT+TGG | 0.570899 | tig0026539:+32500 | None:intergenic |
CAGCTGAGATGGCAATGGAT+AGG | 0.572746 | tig0026539:-32004 | Msa1429670:CDS |
AGTGTGTGGCTGCTCTCGAT+GGG | 0.579630 | tig0026539:-32497 | Msa1429670:CDS |
AACTAAAGGCAAAGATGCAT+AGG | 0.582306 | tig0026539:-33452 | Msa1429670:CDS |
CGTATGTTGAAAACTTAACA+AGG | 0.583345 | tig0026539:-32043 | Msa1429670:CDS |
TGATTCCTATGGAAAAGCGT+TGG | 0.584496 | tig0026539:-32457 | Msa1429670:CDS |
AGCGAAAATGGCGATTTCGA+CGG | 0.590473 | tig0026539:-35045 | Msa1429670:CDS |
TACATCACATCATATGAATG+AGG | 0.591772 | tig0026539:-32625 | Msa1429670:CDS |
TAATGAGAGGAAGCGTGGAT+GGG | 0.591816 | tig0026539:-32388 | Msa1429670:intron |
TTGTTCTCTTACCAAGTGTG+TGG | 0.604130 | tig0026539:-32511 | Msa1429670:CDS |
TGTAGTGAAACAAACAGCCC+AGG | 0.610968 | tig0026539:-36538 | Msa1429670:CDS |
ACGAGGTTCCTAACCTTGAA+GGG | 0.611095 | tig0026539:-32073 | Msa1429670:CDS |
ACGCTTCCTCTCATTAGGCA+TGG | 0.615135 | tig0026539:+32395 | None:intergenic |
AAAACTTGAGGCGGTGAACG+AGG | 0.615754 | tig0026539:-32090 | Msa1429670:intron |
ACCGTGCTTCTTCTTCTCTG+CGG | 0.616187 | tig0026539:-34945 | Msa1429670:CDS |
GGTTCATGTGAGATCCAAGA+AGG | 0.621915 | tig0026539:-32652 | Msa1429670:CDS |
ACCGCAGAGAAGAAGAAGCA+CGG | 0.624330 | tig0026539:+34944 | None:intergenic |
ACTCAACTTATACATCATTG+AGG | 0.624896 | tig0026539:+33506 | None:intergenic |
ACTTTAGGAATATATGCTTG+AGG | 0.637702 | tig0026539:+35839 | None:intergenic |
ATGCCTAATGAGAGGAAGCG+TGG | 0.638032 | tig0026539:-32393 | Msa1429670:CDS |
AGGTGCAGCTGAGATGGCAA+TGG | 0.647281 | tig0026539:-32009 | Msa1429670:CDS |
AAGAAGGGATAGGAGTGCAG+AGG | 0.647414 | tig0026539:-32556 | Msa1429670:CDS |
GTGTGTTTCATACTAGAACA+TGG | 0.658064 | tig0026539:-33530 | Msa1429670:CDS |
GCGGTGGAGAAGAAGAAGCA+AGG | 0.660951 | tig0026539:+34979 | None:intergenic |
ACGGTAGAGAAGAAGCGCGG+TGG | 0.673948 | tig0026539:+34963 | None:intergenic |
TTATCGCCATGCCTAATGAG+AGG | 0.675722 | tig0026539:-32401 | Msa1429670:CDS |
TCATCTTAGAGATAGGATGT+GGG | 0.679475 | tig0026539:-31979 | Msa1429670:CDS |
TATTCACTGAAGCATAACAC+CGG | 0.679933 | tig0026539:-33405 | Msa1429670:CDS |
GATGGAGAAAACAAAATCGG+AGG | 0.703821 | tig0026539:+36408 | None:intergenic |
AGCACGGTAGAGAAGAAGCG+CGG | 0.713678 | tig0026539:+34960 | None:intergenic |
GAAGCTGAAGATCTTCTACG+GGG | 0.818823 | tig0026539:+36458 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAATTATATTTTAAAAAT+AGG | + | tig0026539:33186-33205 | None:intergenic | 0.0% |
!!! | ATATTTTCAGTAAAAAAAAA+TGG | + | tig0026539:33020-33039 | None:intergenic | 10.0% |
!!! | ATAACTTTTTTTATTTCCAT+TGG | + | tig0026539:32196-32215 | None:intergenic | 15.0% |
!!! | GATAATAAAAAATGTGATTT+TGG | + | tig0026539:32948-32967 | None:intergenic | 15.0% |
!! | AATTTAAAAAAAGAGACTAA+GGG | - | tig0026539:33088-33107 | Msa1429670:intron | 15.0% |
!!! | ATAATTTTTGAAAAGTGTTT+TGG | - | tig0026539:33197-33216 | Msa1429670:intron | 15.0% |
!!! | TAATTTTTGAAAAGTGTTTT+GGG | - | tig0026539:33198-33217 | Msa1429670:intron | 15.0% |
!!! | TAAGTTTTTTTTATCTAAAC+AGG | + | tig0026539:33905-33924 | None:intergenic | 15.0% |
!! | TTAAATGCTTATTCAATTAA+TGG | + | tig0026539:34453-34472 | None:intergenic | 15.0% |
!! | TGATTATATATATACCATAT+TGG | + | tig0026539:35338-35357 | None:intergenic | 15.0% |
!! | ATGGTATATATATAATCATT+TGG | - | tig0026539:35340-35359 | Msa1429670:intron | 15.0% |
!! | CATGATTTAAAGAATTCAAA+TGG | - | tig0026539:32025-32044 | Msa1429670:CDS | 20.0% |
!! | ATAAAAAAAGTTATCTCCAA+TGG | - | tig0026539:32202-32221 | Msa1429670:intron | 20.0% |
!! | AAAAATTTAGCAGTAACTTT+AGG | + | tig0026539:32694-32713 | None:intergenic | 20.0% |
!!! | AAAGTTACTGCTAAATTTTT+TGG | - | tig0026539:32694-32713 | Msa1429670:CDS | 20.0% |
!!! | TTTTACTGAAAATATGAGTT+TGG | - | tig0026539:33025-33044 | Msa1429670:intron | 20.0% |
!! | GAATTTAAAAAAAGAGACTA+AGG | - | tig0026539:33087-33106 | Msa1429670:intron | 20.0% |
!!! | TTTTAAAAAGTGTTTCAAAC+AGG | + | tig0026539:33114-33133 | None:intergenic | 20.0% |
!! | AAATAAGAAAAGTGAAAACA+CGG | - | tig0026539:33310-33329 | Msa1429670:intron | 20.0% |
!! | AGTAAAAAAATCGCTATATT+AGG | + | tig0026539:33673-33692 | None:intergenic | 20.0% |
!! | AAAAACACAAAATCATAGAA+CGG | + | tig0026539:33725-33744 | None:intergenic | 20.0% |
!!! | TCTATGTAAATTTAAGATTG+CGG | - | tig0026539:33749-33768 | Msa1429670:intron | 20.0% |
!!! | TTGAATTTTACCACTTTTAA+TGG | - | tig0026539:35210-35229 | Msa1429670:intron | 20.0% |
!!! | TGAATTTTACCACTTTTAAT+GGG | - | tig0026539:35211-35230 | Msa1429670:intron | 20.0% |
!! | ATTTATCATAATTCCAACAA+GGG | + | tig0026539:35315-35334 | None:intergenic | 20.0% |
!! | GAATTATGATAAATCCAATA+TGG | - | tig0026539:35321-35340 | Msa1429670:intron | 20.0% |
!! | TATAATCATTTGGTACATAT+TGG | - | tig0026539:35350-35369 | Msa1429670:intron | 20.0% |
!! | AAATACAAACAAACACAATA+TGG | + | tig0026539:35464-35483 | None:intergenic | 20.0% |
!!! | AAAAGTTTAAGGATTTTGAT+TGG | - | tig0026539:36081-36100 | Msa1429670:CDS | 20.0% |
!! | TATACAAATACTAGATAAGT+AGG | + | tig0026539:36231-36250 | None:intergenic | 20.0% |
!! | TACTTATCTAGTATTTGTAT+AGG | - | tig0026539:36230-36249 | Msa1429670:CDS | 20.0% |
!! | TTTAAGCCTCTTTTTCTTTA+CGG | + | tig0026539:32293-32312 | None:intergenic | 25.0% |
! | AAAAAGAAAGACAAAAGCAA+AGG | - | tig0026539:32503-32522 | Msa1429670:CDS | 25.0% |
! | CATCTAATAAATCTTCGTTA+AGG | - | tig0026539:32608-32627 | Msa1429670:CDS | 25.0% |
! | TTAAGGAAATGTTCAAGTAA+TGG | - | tig0026539:32625-32644 | Msa1429670:CDS | 25.0% |
!!! | ACTGCTAAATTTTTTGGATT+TGG | - | tig0026539:32700-32719 | Msa1429670:CDS | 25.0% |
! | AATACATGAACCAAAAACAT+AGG | + | tig0026539:32829-32848 | None:intergenic | 25.0% |
! | TTCATGTATTATATCATGTG+AGG | - | tig0026539:32839-32858 | Msa1429670:CDS | 25.0% |
!! | GTATAAAAAGATAAGTTGAC+AGG | - | tig0026539:32878-32897 | Msa1429670:CDS | 25.0% |
!!! | GTGATTGTTTCTTTTGAATT+TGG | + | tig0026539:32998-33017 | None:intergenic | 25.0% |
!!! | TGTTTTGGGTTTTTTAGTTT+TGG | - | tig0026539:33212-33231 | Msa1429670:intron | 25.0% |
! | AAAAAGTGAAAGAGCTAAAA+TGG | - | tig0026539:33241-33260 | Msa1429670:intron | 25.0% |
! | AAAAGTGAAAGAGCTAAAAT+GGG | - | tig0026539:33242-33261 | Msa1429670:intron | 25.0% |
! | TAAAAAAATGATAATACCCC+TGG | + | tig0026539:33385-33404 | None:intergenic | 25.0% |
! | TGTATCTTTCAATATTCACA+CGG | - | tig0026539:34162-34181 | Msa1429670:intron | 25.0% |
! | AAATATGTAGCCATCTATTA+GGG | + | tig0026539:34352-34371 | None:intergenic | 25.0% |
!! | CAAAAATATTCGTGTTTTCT+CGG | - | tig0026539:34642-34661 | Msa1429670:intron | 25.0% |
! | GACTAAACTGTAAAAATAGA+AGG | + | tig0026539:34698-34717 | None:intergenic | 25.0% |
!!! | ATGCGTATTTTTATGATAGA+TGG | - | tig0026539:34857-34876 | Msa1429670:intron | 25.0% |
! | AAAACTTTCGTTACAAAATC+AGG | + | tig0026539:34918-34937 | None:intergenic | 25.0% |
!! | GAAAGTTTTCATTGACATAA+TGG | - | tig0026539:34929-34948 | Msa1429670:intron | 25.0% |
! | AATCTGGAAAAATTATCTGA+AGG | - | tig0026539:35177-35196 | Msa1429670:intron | 25.0% |
! | GATTTATCATAATTCCAACA+AGG | + | tig0026539:35316-35335 | None:intergenic | 25.0% |
!!! | TTTCATTGATTCTCTTACTT+AGG | - | tig0026539:35527-35546 | Msa1429670:intron | 25.0% |
! | ATACAATGAGAATAACAGAA+AGG | + | tig0026539:35555-35574 | None:intergenic | 25.0% |
! | TGATATGCATATATCATTTC+AGG | - | tig0026539:35578-35597 | Msa1429670:intron | 25.0% |
! | ATGATCAATACATCAACAAT+GGG | - | tig0026539:35748-35767 | Msa1429670:intron | 25.0% |
! | GATATAACCTGTATTTGTTT+AGG | - | tig0026539:36165-36184 | Msa1429670:CDS | 25.0% |
! | TAGAGAAGTAAACAATCATA+AGG | + | tig0026539:36258-36277 | None:intergenic | 25.0% |
!! | TTATTGTTACTTAGTATGAC+AGG | - | tig0026539:36381-36400 | Msa1429670:CDS | 25.0% |
! | TAACTGATATTGAAAACTTG+AGG | - | tig0026539:36413-36432 | Msa1429670:CDS | 25.0% |
TCATGTGAGAATGAAATTCT+AGG | + | tig0026539:32010-32029 | None:intergenic | 30.0% | |
!! | CATTGGAACTATTTTTCCAT+CGG | + | tig0026539:32179-32198 | None:intergenic | 30.0% |
! | GCTGATGAATTTTTCTTCAT+TGG | + | tig0026539:32238-32257 | None:intergenic | 30.0% |
!!! | TTTACGGTAGTTTTTTGAAG+AGG | + | tig0026539:32277-32296 | None:intergenic | 30.0% |
AAACTACCGTAAAGAAAAAG+AGG | - | tig0026539:32284-32303 | Msa1429670:intron | 30.0% | |
AGAATTCTTGTCTGATGAAA+CGG | - | tig0026539:32312-32331 | Msa1429670:intron | 30.0% | |
CAGAAATGTTTGGATAACAA+TGG | + | tig0026539:32355-32374 | None:intergenic | 30.0% | |
CATTGTTATCCAAACATTTC+TGG | - | tig0026539:32353-32372 | Msa1429670:intron | 30.0% | |
TTTGAATTGCCAGAAATGTT+TGG | + | tig0026539:32365-32384 | None:intergenic | 30.0% | |
GTTCTCTACAATTCTTATCA+AGG | - | tig0026539:32434-32453 | Msa1429670:CDS | 30.0% | |
!!! | TTTTGAAGCTCTGTTTGTTT+TGG | + | tig0026539:32487-32506 | None:intergenic | 30.0% |
! | ACTTTAGGAATATATGCTTG+AGG | + | tig0026539:32679-32698 | None:intergenic | 30.0% |
! | TTTGGTTCATTGTTCTGTAA+AGG | - | tig0026539:32718-32737 | Msa1429670:CDS | 30.0% |
! | CTAATCGAATCCTATGTTTT+TGG | - | tig0026539:32816-32835 | Msa1429670:CDS | 30.0% |
! | AAAGATAAGTTGACAGGTTA+AGG | - | tig0026539:32884-32903 | Msa1429670:CDS | 30.0% |
! | AAGATAAGTTGACAGGTTAA+GGG | - | tig0026539:32885-32904 | Msa1429670:CDS | 30.0% |
! | CAAGTATTGTGTTGTAACTT+TGG | + | tig0026539:33052-33071 | None:intergenic | 30.0% |
AAGTTACAACACAATACTTG+AGG | - | tig0026539:33052-33071 | Msa1429670:intron | 30.0% | |
!!! | AAAAGTGTCACTTTTCTCAA+TGG | - | tig0026539:33335-33354 | Msa1429670:intron | 30.0% |
! | TGTAATTATGTTTGAAGTCC+AGG | - | tig0026539:33364-33383 | Msa1429670:intron | 30.0% |
! | GTAATTATGTTTGAAGTCCA+GGG | - | tig0026539:33365-33384 | Msa1429670:intron | 30.0% |
! | TAATTATGTTTGAAGTCCAG+GGG | - | tig0026539:33366-33385 | Msa1429670:intron | 30.0% |
!! | TTAGTTTTTCTGCAGAATGA+GGG | + | tig0026539:33434-33453 | None:intergenic | 30.0% |
TGTAGATGGAAGAAAAATCA+CGG | + | tig0026539:33516-33535 | None:intergenic | 30.0% | |
GATTGATATTTGCAGCTTAT+AGG | - | tig0026539:33866-33885 | Msa1429670:intron | 30.0% | |
CAAATATGTAGCCATCTATT+AGG | + | tig0026539:34353-34372 | None:intergenic | 30.0% | |
TAGATGGCTACATATTTGTT+TGG | - | tig0026539:34355-34374 | Msa1429670:intron | 30.0% | |
TTTACTAACAAGACAAGAAG+TGG | + | tig0026539:34563-34582 | None:intergenic | 30.0% | |
AGAGAGAGCAAATAAAATCA+AGG | + | tig0026539:34752-34771 | None:intergenic | 30.0% | |
!! | TTGATTTTATTTGCTCTCTC+TGG | - | tig0026539:34751-34770 | Msa1429670:intron | 30.0% |
ACATTAATGAGACAAAGCTT+TGG | - | tig0026539:34892-34911 | Msa1429670:intron | 30.0% | |
!! | ATGGTTGATGAAGTTACAAA+AGG | - | tig0026539:34948-34967 | Msa1429670:CDS | 30.0% |
ACAAAAGGAAATATGCCAAA+TGG | - | tig0026539:34963-34982 | Msa1429670:CDS | 30.0% | |
ACTCAACTTATACATCATTG+AGG | + | tig0026539:35012-35031 | None:intergenic | 30.0% | |
!! | TTTAGTTGATCAGGTTGATA+CGG | + | tig0026539:35050-35069 | None:intergenic | 30.0% |
GGAAAAATTATCTGAAGGTA+TGG | - | tig0026539:35182-35201 | Msa1429670:intron | 30.0% | |
ATCATATCACCCATTAAAAG+TGG | + | tig0026539:35223-35242 | None:intergenic | 30.0% | |
TTAGAGCAATGAACAAAACT+GGG | + | tig0026539:35395-35414 | None:intergenic | 30.0% | |
! | TTTAGAGCAATGAACAAAAC+TGG | + | tig0026539:35396-35415 | None:intergenic | 30.0% |
CAAGATTCATGATTCTAGAT+AGG | + | tig0026539:35489-35508 | None:intergenic | 30.0% | |
TTATTTCCAGCAACTTGTAT+TGG | + | tig0026539:35644-35663 | None:intergenic | 30.0% | |
TTCAACAAAAACAATGCAAC+TGG | - | tig0026539:35666-35685 | Msa1429670:intron | 30.0% | |
GATGATCAATACATCAACAA+TGG | - | tig0026539:35747-35766 | Msa1429670:intron | 30.0% | |
AATACATCAACAATGGGAAT+GGG | - | tig0026539:35754-35773 | Msa1429670:intron | 30.0% | |
TAATCATGTGCATGTTGATA+AGG | - | tig0026539:35782-35801 | Msa1429670:intron | 30.0% | |
TACATCACATCATATGAATG+AGG | - | tig0026539:35890-35909 | Msa1429670:CDS | 30.0% | |
!! | AAAAGCGTTGGAAAAGTTTA+AGG | - | tig0026539:36070-36089 | Msa1429670:CDS | 30.0% |
!!! | AGTTTAAGGATTTTGATTGG+AGG | - | tig0026539:36084-36103 | Msa1429670:CDS | 30.0% |
!!! | GTTTAAGGATTTTGATTGGA+GGG | - | tig0026539:36085-36104 | Msa1429670:CDS | 30.0% |
ACTAGAACCTAAACAAATAC+AGG | + | tig0026539:36175-36194 | None:intergenic | 30.0% | |
CTCGATAAGAGGAAAATAAA+AGG | + | tig0026539:36344-36363 | None:intergenic | 30.0% | |
CGTATGTTGAAAACTTAACA+AGG | - | tig0026539:36472-36491 | Msa1429670:CDS | 30.0% | |
TTAACAAGGTTATCTGATGA+AGG | - | tig0026539:36486-36505 | Msa1429670:CDS | 30.0% | |
ATAGGAATCATCTTAGAGAT+AGG | - | tig0026539:36529-36548 | Msa1429670:CDS | 30.0% | |
!! | AAATTCTAGGACTGAATCCT+GGG | + | tig0026539:31997-32016 | None:intergenic | 35.0% |
CGATGGAAAAATAGTTCCAA+TGG | - | tig0026539:32177-32196 | Msa1429670:intron | 35.0% | |
CATTGGAACGATAATTCCAT+TGG | + | tig0026539:32221-32240 | None:intergenic | 35.0% | |
GTGAGGCTAACTAATAATTC+TGG | - | tig0026539:32856-32875 | Msa1429670:CDS | 35.0% | |
CACAATACTTGAGGATCAAA+TGG | - | tig0026539:33061-33080 | Msa1429670:intron | 35.0% | |
!!! | GTTAGTTTTTCTGCAGAATG+AGG | + | tig0026539:33435-33454 | None:intergenic | 35.0% |
ATATTTGCAGCTTATAGGTC+TGG | - | tig0026539:33871-33890 | Msa1429670:intron | 35.0% | |
TTCAATATTCACACGGATAC+CGG | - | tig0026539:34169-34188 | Msa1429670:intron | 35.0% | |
TGCACACAAGAACTAGAAAA+AGG | + | tig0026539:34315-34334 | None:intergenic | 35.0% | |
TATGCTTGTTCCCTAATAGA+TGG | - | tig0026539:34339-34358 | Msa1429670:intron | 35.0% | |
GTTTGAGCTCAATACTTCAA+AGG | + | tig0026539:34498-34517 | None:intergenic | 35.0% | |
TTTACTTGTACAACCCAGTT+TGG | + | tig0026539:34528-34547 | None:intergenic | 35.0% | |
GGTTGTACAAGTAAAGAACA+GGG | - | tig0026539:34533-34552 | Msa1429670:intron | 35.0% | |
GTTGTACAAGTAAAGAACAG+GGG | - | tig0026539:34534-34553 | Msa1429670:intron | 35.0% | |
! | TCTTGTCTTGTTAGTAAAGC+TGG | - | tig0026539:34565-34584 | Msa1429670:intron | 35.0% |
CAAGACTTGGCACAAAAATA+AGG | + | tig0026539:34606-34625 | None:intergenic | 35.0% | |
TATCTGTCAGATACAAGACT+TGG | + | tig0026539:34619-34638 | None:intergenic | 35.0% | |
CTAGTATGAAACACACCATT+TGG | + | tig0026539:34981-35000 | None:intergenic | 35.0% | |
GTGTGTTTCATACTAGAACA+TGG | - | tig0026539:34985-35004 | Msa1429670:CDS | 35.0% | |
! | TTGATACGGTCGATTAGTTA+TGG | + | tig0026539:35036-35055 | None:intergenic | 35.0% |
GTATCAACCTGATCAACTAA+AGG | - | tig0026539:35049-35068 | Msa1429670:CDS | 35.0% | |
ATCTTTGCCTTTAGTTGATC+AGG | + | tig0026539:35059-35078 | None:intergenic | 35.0% | |
AACTAAAGGCAAAGATGCAT+AGG | - | tig0026539:35063-35082 | Msa1429670:CDS | 35.0% | |
TGAATAGAACTCACGATACA+TGG | + | tig0026539:35096-35115 | None:intergenic | 35.0% | |
TATTCACTGAAGCATAACAC+CGG | - | tig0026539:35110-35129 | Msa1429670:intron | 35.0% | |
TCATGCTTCTATTAGTGACA+TGG | - | tig0026539:35268-35287 | Msa1429670:intron | 35.0% | |
TCACATTTCAATACCCTTGT+TGG | - | tig0026539:35299-35318 | Msa1429670:intron | 35.0% | |
!!! | TTTTGAAACTCTGCAGCTTT+GGG | + | tig0026539:35609-35628 | None:intergenic | 35.0% |
CTGCAGAGTTTCAAAAGAAA+GGG | - | tig0026539:35613-35632 | Msa1429670:intron | 35.0% | |
CAATACATCAACAATGGGAA+TGG | - | tig0026539:35753-35772 | Msa1429670:intron | 35.0% | |
TTTCTTTGGTAAGAGCTGAT+AGG | - | tig0026539:35934-35953 | Msa1429670:CDS | 35.0% | |
TAAGAGCTGATAGGTTAAGA+AGG | - | tig0026539:35943-35962 | Msa1429670:CDS | 35.0% | |
AAGAGCTGATAGGTTAAGAA+GGG | - | tig0026539:35944-35963 | Msa1429670:CDS | 35.0% | |
GACATTTCAGATGATTCCTA+TGG | - | tig0026539:36047-36066 | Msa1429670:CDS | 35.0% | |
AAAACACGATACTCGATAAG+AGG | + | tig0026539:36355-36374 | None:intergenic | 35.0% | |
CTGATATTGAAAACTTGAGG+CGG | - | tig0026539:36416-36435 | Msa1429670:CDS | 35.0% | |
ATCATCTTAGAGATAGGATG+TGG | - | tig0026539:36535-36554 | Msa1429670:CDS | 35.0% | |
TCATCTTAGAGATAGGATGT+GGG | - | tig0026539:36536-36555 | Msa1429670:CDS | 35.0% | |
!! | GAAATTCTAGGACTGAATCC+TGG | + | tig0026539:31998-32017 | None:intergenic | 40.0% |
AATCGGAGGTTGAATCTAAG+AGG | + | tig0026539:32096-32115 | None:intergenic | 40.0% | |
GATGGAGAAAACAAAATCGG+AGG | + | tig0026539:32110-32129 | None:intergenic | 40.0% | |
GGCGATGGAGAAAACAAAAT+CGG | + | tig0026539:32113-32132 | None:intergenic | 40.0% | |
!! | TTTGTTTTCTCCATCGCCAA+TGG | - | tig0026539:32115-32134 | Msa1429670:intron | 40.0% |
GAACTGCTGAGAAAAACCAT+TGG | + | tig0026539:32134-32153 | None:intergenic | 40.0% | |
!!! | GCTGATGAACTTTTTTCCGA+TGG | - | tig0026539:32160-32179 | Msa1429670:intron | 40.0% |
TTATCAAGGAGCCATTCAAC+CGG | - | tig0026539:32448-32467 | Msa1429670:CDS | 40.0% | |
!! | TTTTGGATTCAGCACTGAAC+CGG | + | tig0026539:32470-32489 | None:intergenic | 40.0% |
GCTTGAGGTAGATTCAAAAC+AGG | + | tig0026539:32664-32683 | None:intergenic | 40.0% | |
AGAACACTGAGAAGCGAAAA+TGG | - | tig0026539:33458-33477 | Msa1429670:CDS | 40.0% | |
AGATGGAAGAAAAATCACGG+CGG | + | tig0026539:33513-33532 | None:intergenic | 40.0% | |
AAGAAGAAGCAAGGTGTAGA+TGG | + | tig0026539:33530-33549 | None:intergenic | 40.0% | |
!!! | TTCTTCTCTGCGGTTTTTTC+AGG | - | tig0026539:33580-33599 | Msa1429670:CDS | 40.0% |
TCAAACAGCTTAGCCAAACT+GGG | - | tig0026539:34512-34531 | Msa1429670:intron | 40.0% | |
GGGTTGTACAAGTAAAGAAC+AGG | - | tig0026539:34532-34551 | Msa1429670:intron | 40.0% | |
GCACAAAAATAAGGCTACCT+AGG | + | tig0026539:34597-34616 | None:intergenic | 40.0% | |
!!! | CTCTCTGGTGCTACTTTTAT+AGG | - | tig0026539:34766-34785 | Msa1429670:intron | 40.0% |
GTTACTGCAACTGAAGAATC+TGG | - | tig0026539:35161-35180 | Msa1429670:intron | 40.0% | |
!!! | CTTTTGAAACTCTGCAGCTT+TGG | + | tig0026539:35610-35629 | None:intergenic | 40.0% |
GCTGCAGAGTTTCAAAAGAA+AGG | - | tig0026539:35612-35631 | Msa1429670:intron | 40.0% | |
TTTCGTCATCTGTGTTTGGT+GGG | + | tig0026539:35719-35738 | None:intergenic | 40.0% | |
! | TTTTCGTCATCTGTGTTTGG+TGG | + | tig0026539:35720-35739 | None:intergenic | 40.0% |
! | TCGTTTTCGTCATCTGTGTT+TGG | + | tig0026539:35723-35742 | None:intergenic | 40.0% |
ATGTGATGTAGACTCCTTCT+TGG | + | tig0026539:35880-35899 | None:intergenic | 40.0% | |
AGCATGTGCTCAAGTTTCTT+TGG | - | tig0026539:35920-35939 | Msa1429670:CDS | 40.0% | |
CTGATAGGTTAAGAAGGGAT+AGG | - | tig0026539:35949-35968 | Msa1429670:CDS | 40.0% | |
TTGTTCTCTTACCAAGTGTG+TGG | - | tig0026539:36004-36023 | Msa1429670:CDS | 40.0% | |
! | TGATTCCTATGGAAAAGCGT+TGG | - | tig0026539:36058-36077 | Msa1429670:CDS | 40.0% |
! | CTTTTCCAACGCTTTTCCAT+AGG | + | tig0026539:36066-36085 | None:intergenic | 40.0% |
TGTAGTGAAACAAACAGCCC+AGG | - | tig0026539:31977-31996 | Msa1429670:CDS | 45.0% | |
GAAGCTGAAGATCTTCTACG+GGG | + | tig0026539:32060-32079 | None:intergenic | 45.0% | |
CGAAGCTGAAGATCTTCTAC+GGG | + | tig0026539:32061-32080 | None:intergenic | 45.0% | |
CCGAAGCTGAAGATCTTCTA+CGG | + | tig0026539:32062-32081 | None:intergenic | 45.0% | |
CCGTAGAAGATCTTCAGCTT+CGG | - | tig0026539:32059-32078 | Msa1429670:CDS | 45.0% | |
CTGAGAAAAACCATTGGCGA+TGG | + | tig0026539:32128-32147 | None:intergenic | 45.0% | |
AGCGAAAATGGCGATTTCGA+CGG | - | tig0026539:33470-33489 | Msa1429670:CDS | 45.0% | |
AGAAAAATCACGGCGGAGAT+CGG | + | tig0026539:33506-33525 | None:intergenic | 45.0% | |
!! | CCGTTGACGAGTTTTGTATC+CGG | + | tig0026539:34191-34210 | None:intergenic | 45.0% |
CCGGATACAAAACTCGTCAA+CGG | - | tig0026539:34188-34207 | Msa1429670:intron | 45.0% | |
CTCAAACAGCTTAGCCAAAC+TGG | - | tig0026539:34511-34530 | Msa1429670:intron | 45.0% | |
AGTAAAGCTGGACTGAACCT+AGG | - | tig0026539:34577-34596 | Msa1429670:intron | 45.0% | |
CTGAAGCATAACACCGGATT+TGG | - | tig0026539:35116-35135 | Msa1429670:intron | 45.0% | |
TTCAGCATTCCAGCCAAATC+CGG | + | tig0026539:35132-35151 | None:intergenic | 45.0% | |
GTGTGACCAATACAAGTTGC+TGG | - | tig0026539:35635-35654 | Msa1429670:intron | 45.0% | |
! | ATCTGTGTTTGGTGGGTCTT+GGG | + | tig0026539:35712-35731 | None:intergenic | 45.0% |
GGTTCATGTGAGATCCAAGA+AGG | - | tig0026539:35863-35882 | Msa1429670:CDS | 45.0% | |
TTATCGCCATGCCTAATGAG+AGG | - | tig0026539:36114-36133 | Msa1429670:CDS | 45.0% | |
! | TAATGAGAGGAAGCGTGGAT+GGG | - | tig0026539:36127-36146 | Msa1429670:CDS | 45.0% |
AACGAGGTTCCTAACCTTGA+AGG | - | tig0026539:36441-36460 | Msa1429670:CDS | 45.0% | |
ACGAGGTTCCTAACCTTGAA+GGG | - | tig0026539:36442-36461 | Msa1429670:CDS | 45.0% | |
!!! | ATTTTTTTATCAAAAAAATT+TGG | - | tig0026539:33396-33415 | Msa1429670:CDS | 5.0% |
! | TCAGCACTGAACCGGTTGAA+TGG | + | tig0026539:32462-32481 | None:intergenic | 50.0% |
ACCGTGCTTCTTCTTCTCTG+CGG | - | tig0026539:33570-33589 | Msa1429670:CDS | 50.0% | |
ACCGCAGAGAAGAAGAAGCA+CGG | + | tig0026539:33574-33593 | None:intergenic | 50.0% | |
AGCATAACACCGGATTTGGC+TGG | - | tig0026539:35120-35139 | Msa1429670:intron | 50.0% | |
! | CATCTGTGTTTGGTGGGTCT+TGG | + | tig0026539:35713-35732 | None:intergenic | 50.0% |
! | AAGAAGGGATAGGAGTGCAG+AGG | - | tig0026539:35959-35978 | Msa1429670:CDS | 50.0% |
ACGCTTCCTCTCATTAGGCA+TGG | + | tig0026539:36123-36142 | None:intergenic | 50.0% | |
ATGCCTAATGAGAGGAAGCG+TGG | - | tig0026539:36122-36141 | Msa1429670:CDS | 50.0% | |
CATCCACGCTTCCTCTCATT+AGG | + | tig0026539:36128-36147 | None:intergenic | 50.0% | |
! | CTAATGAGAGGAAGCGTGGA+TGG | - | tig0026539:36126-36145 | Msa1429670:CDS | 50.0% |
GGATGGGTACTTAGGCTCTA+AGG | - | tig0026539:36143-36162 | Msa1429670:CDS | 50.0% | |
AAAACTTGAGGCGGTGAACG+AGG | - | tig0026539:36425-36444 | Msa1429670:CDS | 50.0% | |
GAGCTCATCCCTTCAAGGTT+AGG | + | tig0026539:36453-36472 | None:intergenic | 50.0% | |
CATACGAGCTCATCCCTTCA+AGG | + | tig0026539:36458-36477 | None:intergenic | 50.0% | |
! | TGATGAAGGTGCAGCTGAGA+TGG | - | tig0026539:36500-36519 | Msa1429670:CDS | 50.0% |
CAGCTGAGATGGCAATGGAT+AGG | - | tig0026539:36511-36530 | Msa1429670:CDS | 50.0% | |
GCGGTGGAGAAGAAGAAGCA+AGG | + | tig0026539:33539-33558 | None:intergenic | 55.0% | |
AGCACGGTAGAGAAGAAGCG+CGG | + | tig0026539:33558-33577 | None:intergenic | 55.0% | |
CACTCGCAGTGAAAAGCGAC+AGG | - | tig0026539:35842-35861 | Msa1429670:CDS | 55.0% | |
ATCGAGAGCAGCCACACACT+TGG | + | tig0026539:36018-36037 | None:intergenic | 55.0% | |
AAGTGTGTGGCTGCTCTCGA+TGG | - | tig0026539:36017-36036 | Msa1429670:CDS | 55.0% | |
AGTGTGTGGCTGCTCTCGAT+GGG | - | tig0026539:36018-36037 | Msa1429670:CDS | 55.0% | |
! | GGAAGCGTGGATGGGTACTT+AGG | - | tig0026539:36135-36154 | Msa1429670:CDS | 55.0% |
AGGTGCAGCTGAGATGGCAA+TGG | - | tig0026539:36506-36525 | Msa1429670:CDS | 55.0% | |
! | ACGGTAGAGAAGAAGCGCGG+TGG | + | tig0026539:33555-33574 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0026539 | gene | 31962 | 36575 | 31962 | ID=Msa1429670;Name=Msa1429670 |
tig0026539 | mRNA | 31962 | 36575 | 31962 | ID=Msa1429670-mRNA-1;Parent=Msa1429670;Name=Msa1429670-mRNA-1;_AED=0.30;_eAED=0.35;_QI=0|0.25|0|1|1|1|5|0|632 |
tig0026539 | exon | 35809 | 36575 | 35809 | ID=Msa1429670-mRNA-1:exon:6665;Parent=Msa1429670-mRNA-1 |
tig0026539 | exon | 34936 | 35092 | 34936 | ID=Msa1429670-mRNA-1:exon:6664;Parent=Msa1429670-mRNA-1 |
tig0026539 | exon | 33377 | 33661 | 33377 | ID=Msa1429670-mRNA-1:exon:6663;Parent=Msa1429670-mRNA-1 |
tig0026539 | exon | 32389 | 32937 | 32389 | ID=Msa1429670-mRNA-1:exon:6662;Parent=Msa1429670-mRNA-1 |
tig0026539 | exon | 31962 | 32102 | 31962 | ID=Msa1429670-mRNA-1:exon:6661;Parent=Msa1429670-mRNA-1 |
tig0026539 | CDS | 35809 | 36575 | 35809 | ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1 |
tig0026539 | CDS | 34936 | 35092 | 34936 | ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1 |
tig0026539 | CDS | 33377 | 33661 | 33377 | ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1 |
tig0026539 | CDS | 32389 | 32937 | 32389 | ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1 |
tig0026539 | CDS | 31962 | 32102 | 31962 | ID=Msa1429670-mRNA-1:cds;Parent=Msa1429670-mRNA-1 |
Gene Sequence |
Protein sequence |