Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430180 | XP_003622926.2 | 96.341 | 410 | 14 | 1 | 1 | 409 | 1 | 410 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430180 | sp|Q8LBL5|PRT1_ARATH | 48.219 | 365 | 175 | 7 | 1 | 355 | 5 | 365 | 8.13e-112 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430180 | G7L188 | 96.341 | 410 | 14 | 1 | 1 | 409 | 1 | 410 | 0.0 | 819 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1021200 | Msa1430180 | 0.821666 | 3.576497e-53 | -8.615850e-47 |
| Msa1059950 | Msa1430180 | 0.825957 | 3.531536e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430180 | MtrunA17_Chr7g0237221 | 96.341 | 410 | 14 | 1 | 1 | 409 | 1 | 410 | 0.0 | 819 |
| Msa1430180 | MtrunA17_Chr4g0010101 | 58.491 | 371 | 132 | 7 | 2 | 366 | 4 | 358 | 1.72e-147 | 423 |
| Msa1430180 | MtrunA17_Chr7g0237261 | 92.784 | 97 | 7 | 0 | 1 | 97 | 1 | 97 | 1.56e-55 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430180 | AT3G24800.1 | 48.219 | 365 | 175 | 7 | 1 | 355 | 5 | 365 | 8.26e-113 | 337 |
Find 103 sgRNAs with CRISPR-Local
Find 435 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTCATATGTGCTGTTTC+TGG | 0.132135 | tig0026639:+33685 | Msa1430180:CDS |
| AATCATTTGGTTATATAAAT+TGG | 0.214799 | tig0026639:-39089 | Msa1430180:intergenic |
| GAAGGCAGAGATAGAGAATT+TGG | 0.233360 | tig0026639:-32482 | Msa1430180:intergenic |
| CGGTAACAACGGTGAAAATA+TGG | 0.244050 | tig0026639:+37443 | Msa1430180:CDS |
| CTATCTCTGCCTTCAGAAAA+TGG | 0.260590 | tig0026639:+32491 | Msa1430180:exon |
| ATTCTATGTGTGAATCATAA+TGG | 0.273252 | tig0026639:+39049 | Msa1430180:three_prime_UTR |
| TCTTTCAACATCCAGTCTTT+AGG | 0.278763 | tig0026639:+38683 | Msa1430180:CDS |
| AGATTCAGTTGGAAACTTAT+TGG | 0.282390 | tig0026639:-38875 | Msa1430180:intergenic |
| GTTCTCTGTGCATATTCTTC+AGG | 0.323222 | tig0026639:-35806 | Msa1430180:intergenic |
| TAATTTCAGGTTCTCCTTCA+TGG | 0.328542 | tig0026639:-35415 | Msa1430180:intergenic |
| TTCCTCCTCTACGATAAATC+TGG | 0.336084 | tig0026639:+35337 | Msa1430180:CDS |
| TGTGAATCACAAGCTAAATT+TGG | 0.337553 | tig0026639:+35296 | Msa1430180:CDS |
| CTATGAGAATCCTACTATTA+AGG | 0.339041 | tig0026639:-38962 | Msa1430180:intergenic |
| ATTAAATCGACCGGGAAGTT+TGG | 0.339988 | tig0026639:-38564 | Msa1430180:intergenic |
| TTCTATGTGTGAATCATAAT+GGG | 0.341287 | tig0026639:+39050 | Msa1430180:three_prime_UTR |
| ACCACTTGAGTTCAATCATT+TGG | 0.346067 | tig0026639:-39102 | Msa1430180:intergenic |
| ATACAAGAGGAAGATGTCTT+AGG | 0.351778 | tig0026639:-35863 | Msa1430180:intergenic |
| ACTCGAGTACCAGTAATTTC+AGG | 0.355130 | tig0026639:-35428 | Msa1430180:intergenic |
| ACGCAACAACAAAAGGAATC+TGG | 0.356154 | tig0026639:-32564 | Msa1430180:intergenic |
| TCATAATGGGATATACTCTA+TGG | 0.368473 | tig0026639:+39063 | Msa1430180:three_prime_UTR |
| AATCTAAGTGTCCAACTTGT+AGG | 0.375096 | tig0026639:+33739 | Msa1430180:CDS |
| AAAGTAGATCATGATTACTT+TGG | 0.376500 | tig0026639:-38798 | Msa1430180:intergenic |
| TTATATCTATTTCCAATGAT+AGG | 0.376913 | tig0026639:-38479 | Msa1430180:intergenic |
| AAGTAATCATGATCTACTTT+TGG | 0.377167 | tig0026639:+38801 | Msa1430180:three_prime_UTR |
| AGACATACCAAGGGTTTGAT+TGG | 0.383910 | tig0026639:-33847 | Msa1430180:intergenic |
| AAGTAGATCATGATTACTTT+GGG | 0.384261 | tig0026639:-38797 | Msa1430180:intergenic |
| GTCCTTCTATTGTAAGCAAC+AGG | 0.387178 | tig0026639:-33825 | Msa1430180:intergenic |
| ATCCTGTTGCTTACAATAGA+AGG | 0.392555 | tig0026639:+33823 | Msa1430180:CDS |
| CTATGTTTGGCCTTAATAGT+AGG | 0.399237 | tig0026639:+38952 | Msa1430180:three_prime_UTR |
| CCAAAGTGAGCTTTCGAGTC+AGG | 0.400318 | tig0026639:-37480 | Msa1430180:intergenic |
| CAGACTTTCGGAAATCCTCT+TGG | 0.402123 | tig0026639:-35749 | Msa1430180:intergenic |
| TTAGAGGAAGAGAAGAAATC+AGG | 0.403372 | tig0026639:+35242 | Msa1430180:intron |
| AGGATTTCCGAAAGTCTGTT+TGG | 0.403934 | tig0026639:+35754 | Msa1430180:CDS |
| GAAGGAGAACCTGAAATTAC+TGG | 0.405207 | tig0026639:+35419 | Msa1430180:CDS |
| GAAGCACTTGGGTTGTTTGA+TGG | 0.422048 | tig0026639:+38725 | Msa1430180:CDS |
| GACAGTCGCTCCAAACTTCC+CGG | 0.423547 | tig0026639:+38554 | Msa1430180:CDS |
| ATTCTATGTTTCCTAAAGAC+TGG | 0.428866 | tig0026639:-38694 | Msa1430180:intergenic |
| GGCTGATCACTGGACAGTTA+AGG | 0.432087 | tig0026639:+38654 | Msa1430180:CDS |
| GAAGCATTTGGCAGACTGTT+GGG | 0.433058 | tig0026639:-33779 | Msa1430180:intergenic |
| ATGCAATGCGCAACTATGTT+TGG | 0.437020 | tig0026639:+38939 | Msa1430180:three_prime_UTR |
| TTCAGAAGTTCCGACATTGC+TGG | 0.439795 | tig0026639:-35369 | Msa1430180:intergenic |
| TTCTTAGGTTTATTAGATAA+CGG | 0.442432 | tig0026639:+37423 | Msa1430180:intron |
| GCTGATCACTGGACAGTTAA+GGG | 0.453416 | tig0026639:+38655 | Msa1430180:CDS |
| GAATTTACAGCTGAAGCACT+TGG | 0.454031 | tig0026639:+38713 | Msa1430180:CDS |
| TGTCGGAACTTCTGAATGTA+TGG | 0.457216 | tig0026639:+35376 | Msa1430180:CDS |
| TCAAACTCCAAACAGACTTT+CGG | 0.459929 | tig0026639:-35761 | Msa1430180:intergenic |
| CTTCATGTTCATCGTGATCA+AGG | 0.464343 | tig0026639:-32533 | Msa1430180:intergenic |
| GTACAGGTATTACCTATCAT+TGG | 0.466067 | tig0026639:+38467 | Msa1430180:intron |
| CAGACAAACGCAACAACAAA+AGG | 0.468211 | tig0026639:-32571 | Msa1430180:intergenic |
| AGTTCCGACATTGCTGGAGT+TGG | 0.473470 | tig0026639:-35363 | Msa1430180:intergenic |
| AACAGATGCTATTGAACTAA+AGG | 0.473532 | tig0026639:+35826 | Msa1430180:CDS |
| TTCGGAAATCCTCTTGGATG+TGG | 0.478072 | tig0026639:-35743 | Msa1430180:intergenic |
| GTTGTCTTACATAGTACAAT+GGG | 0.481481 | tig0026639:-33586 | Msa1430180:intergenic |
| TCGAAAGCTCACTTTGGAGT+TGG | 0.481647 | tig0026639:+37486 | Msa1430180:CDS |
| TTGTAGCATCAGGTTCATCT+TGG | 0.481698 | tig0026639:-38760 | Msa1430180:intergenic |
| CGCAACAACAAAAGGAATCT+GGG | 0.481878 | tig0026639:-32563 | Msa1430180:intergenic |
| AATTTCAGGTTCTCCTTCAT+GGG | 0.482482 | tig0026639:-35414 | Msa1430180:intergenic |
| TGAAGCATTTGGCAGACTGT+TGG | 0.487089 | tig0026639:-33780 | Msa1430180:intergenic |
| GTAGTTCTTCATTGCGGTCA+TGG | 0.487400 | tig0026639:+35548 | Msa1430180:CDS |
| CCTGACTCGAAAGCTCACTT+TGG | 0.493932 | tig0026639:+37480 | Msa1430180:CDS |
| CTTAATAGTAGGATTCTCAT+AGG | 0.498453 | tig0026639:+38963 | Msa1430180:three_prime_UTR |
| ATTATGTTACGACGAGGGTC+AGG | 0.504681 | tig0026639:-38626 | Msa1430180:intergenic |
| TTTATCGTAGAGGAGGAAGA+AGG | 0.510014 | tig0026639:-35332 | Msa1430180:intergenic |
| CAGAGATAGAGAATTTGGAA+TGG | 0.518418 | tig0026639:-32477 | Msa1430180:intergenic |
| ATGTTGTTGATTAAATCGAC+CGG | 0.525287 | tig0026639:-38573 | Msa1430180:intergenic |
| CACATTGTACACATCACGTC+AGG | 0.527410 | tig0026639:-35503 | Msa1430180:intergenic |
| AAGCTAGAGAAAGATTCAGT+TGG | 0.540119 | tig0026639:-38886 | Msa1430180:intergenic |
| ATAATGTTGAGGCTGATCAC+TGG | 0.541980 | tig0026639:+38644 | Msa1430180:CDS |
| ATGTGTCGAGATCAAATTGA+GGG | 0.551782 | tig0026639:-35274 | Msa1430180:intergenic |
| AGAAGGACCAATCAAACCCT+TGG | 0.556347 | tig0026639:+33840 | Msa1430180:CDS |
| CAACCTGGGTCTTCCCATGA+AGG | 0.559563 | tig0026639:+35401 | Msa1430180:CDS |
| ACCAAATGATTGAACTCAAG+TGG | 0.560364 | tig0026639:+39101 | Msa1430180:three_prime_UTR |
| TGACCGCAATGAAGAACTAC+AGG | 0.562056 | tig0026639:-35545 | Msa1430180:intergenic |
| CTTCATGGGAAGACCCAGGT+TGG | 0.564739 | tig0026639:-35400 | Msa1430180:intergenic |
| CGTTGTCTTACATAGTACAA+TGG | 0.567668 | tig0026639:-33587 | Msa1430180:intergenic |
| TTATCGTAGAGGAGGAAGAA+GGG | 0.571648 | tig0026639:-35331 | Msa1430180:intergenic |
| GATTCCAACTCCAGCAATGT+CGG | 0.586368 | tig0026639:+35359 | Msa1430180:CDS |
| AATTTACAGCTGAAGCACTT+GGG | 0.587037 | tig0026639:+38714 | Msa1430180:CDS |
| ATATAAATGCAATGACTGCA+AGG | 0.592429 | tig0026639:+38496 | Msa1430180:CDS |
| CTGAATGTATGGACCAACCT+GGG | 0.596406 | tig0026639:+35387 | Msa1430180:CDS |
| GCACTTGGGTTGTTTGATGG+TGG | 0.598437 | tig0026639:+38728 | Msa1430180:CDS |
| AAGACTGGATGTTGAAAGAA+CGG | 0.601005 | tig0026639:-38679 | Msa1430180:intergenic |
| TCTGAATGTATGGACCAACC+TGG | 0.603579 | tig0026639:+35386 | Msa1430180:CDS |
| ATCCAGATTTATCGTAGAGG+AGG | 0.605715 | tig0026639:-35339 | Msa1430180:intergenic |
| TAGTATTGATGCCTACAAGT+TGG | 0.620663 | tig0026639:-33750 | Msa1430180:intergenic |
| ACAACGGTGAAAATATGGAA+TGG | 0.622237 | tig0026639:+37448 | Msa1430180:CDS |
| TGTTGTTGATTAAATCGACC+GGG | 0.622865 | tig0026639:-38572 | Msa1430180:intergenic |
| CATCCTGTAGTTCTTCATTG+CGG | 0.631699 | tig0026639:+35542 | Msa1430180:CDS |
| TCTCCTTCATGGGAAGACCC+AGG | 0.634624 | tig0026639:-35404 | Msa1430180:intergenic |
| GATGTGGAATTTGACAAACT+TGG | 0.636520 | tig0026639:-35727 | Msa1430180:intergenic |
| CATGTGTCGAGATCAAATTG+AGG | 0.638580 | tig0026639:-35275 | Msa1430180:intergenic |
| TGTCAAATTCCACATCCAAG+AGG | 0.641776 | tig0026639:+35734 | Msa1430180:CDS |
| GTGTACATAAATCAATGAGT+GGG | 0.647814 | tig0026639:+33709 | Msa1430180:CDS |
| AAGCTTGAAACTGTGATCTG+AGG | 0.649140 | tig0026639:-38597 | Msa1430180:intergenic |
| CTCAACATTATGTTACGACG+AGG | 0.657315 | tig0026639:-38632 | Msa1430180:intergenic |
| GGAATCCAGATTTATCGTAG+AGG | 0.677717 | tig0026639:-35342 | Msa1430180:intergenic |
| TTATTAGATAACGGTAACAA+CGG | 0.687872 | tig0026639:+37432 | Msa1430180:CDS |
| TGTTGTGTAAGATTATCCTG+AGG | 0.689095 | tig0026639:-35467 | Msa1430180:intergenic |
| TGTGTACATAAATCAATGAG+TGG | 0.690277 | tig0026639:+33708 | Msa1430180:CDS |
| TGTGTCGAGATCAAATTGAG+GGG | 0.711213 | tig0026639:-35273 | Msa1430180:intergenic |
| TCAACATTATGTTACGACGA+GGG | 0.714087 | tig0026639:-38631 | Msa1430180:intergenic |
| CTCGTCGTAACATAATGTTG+AGG | 0.716659 | tig0026639:+38633 | Msa1430180:CDS |
| TGTACATAAATCAATGAGTG+GGG | 0.737997 | tig0026639:+33710 | Msa1430180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | tig0026639:34268-34287 | Msa1430180:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | tig0026639:34268-34287 | Msa1430180:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | tig0026639:34267-34286 | Msa1430180:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | tig0026639:34268-34287 | Msa1430180:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | tig0026639:34267-34286 | Msa1430180:intergenic | 0.0% |
| !! | TTTAATAAAAATAAAAATAA+AGG | - | tig0026639:37066-37085 | Msa1430180:intergenic | 0.0% |
| !! | TTTGAATAGTAAATAATAAT+TGG | - | tig0026639:32705-32724 | Msa1430180:intergenic | 10.0% |
| !! | ATTATTATTTACTATTCAAA+AGG | + | tig0026639:32705-32724 | Msa1430180:intron | 10.0% |
| !! | TTATTATTTACTATTCAAAA+GGG | + | tig0026639:32706-32725 | Msa1430180:intron | 10.0% |
| !!! | TCATCATTTTAAAAAAATAA+AGG | - | tig0026639:32744-32763 | Msa1430180:intergenic | 10.0% |
| !!! | ATTTTTATTCTAAAGTTAAA+AGG | + | tig0026639:33433-33452 | Msa1430180:intron | 10.0% |
| !! | TTAAAATGAAATAGTATTAT+AGG | - | tig0026639:36185-36204 | Msa1430180:intergenic | 10.0% |
| !!! | GTTATTTTGAATAATTTTTA+TGG | - | tig0026639:36208-36227 | Msa1430180:intergenic | 10.0% |
| !!! | AATTTTTTCTCTTTTTATCA+AGG | + | tig0026639:32666-32685 | Msa1430180:intron | 15.0% |
| !! | ATGAATTATTATAACTCTAA+TGG | - | tig0026639:32970-32989 | Msa1430180:intergenic | 15.0% |
| !! | AAAAAAAAAAAAACAGTATC+CGG | - | tig0026639:33302-33321 | Msa1430180:intergenic | 15.0% |
| !! | TATAATTTAATAAAGAAACG+AGG | - | tig0026639:33517-33536 | Msa1430180:intergenic | 15.0% |
| !! | AAATTAATAGTAACTATCTT+TGG | - | tig0026639:33932-33951 | Msa1430180:intergenic | 15.0% |
| !!! | GTTTTATTTCTAATGTTTTA+TGG | + | tig0026639:35023-35042 | Msa1430180:intron | 15.0% |
| !! | AATAAATACAATTTACTAGA+AGG | - | tig0026639:35155-35174 | Msa1430180:intergenic | 15.0% |
| !! | TAATAAAATATACATACAAG+AGG | - | tig0026639:35879-35898 | Msa1430180:intergenic | 15.0% |
| !!! | TGCTTTTAGATTTTTTTATA+TGG | + | tig0026639:35972-35991 | Msa1430180:intron | 15.0% |
| !! | ATAACAATAAGTAATAGATA+TGG | - | tig0026639:36406-36425 | Msa1430180:intergenic | 15.0% |
| !!! | AAATCATTTTTAGTGATTTA+TGG | + | tig0026639:36529-36548 | Msa1430180:intron | 15.0% |
| !!! | AATCATTTTTAGTGATTTAT+GGG | + | tig0026639:36530-36549 | Msa1430180:intron | 15.0% |
| !!! | TAATTATTTTCTTCTTTCTT+AGG | + | tig0026639:37408-37427 | Msa1430180:intron | 15.0% |
| !! | TTAACAATATGTAGAATTAA+AGG | - | tig0026639:37663-37682 | Msa1430180:intergenic | 15.0% |
| !!! | ATTCTACATATTGTTAATTT+TGG | + | tig0026639:37666-37685 | Msa1430180:intron | 15.0% |
| !!! | TATTAGTTTATAGATGTTAA+CGG | + | tig0026639:38246-38265 | Msa1430180:intron | 15.0% |
| !! | AATCATTTGGTTATATAAAT+TGG | - | tig0026639:39092-39111 | Msa1430180:intergenic | 15.0% |
| !! | AAGAGAAAAAATTGAACATA+GGG | - | tig0026639:32659-32678 | Msa1430180:intergenic | 20.0% |
| !! | AAAGAGAAAAAATTGAACAT+AGG | - | tig0026639:32660-32679 | Msa1430180:intergenic | 20.0% |
| !!! | TTAGCTTTAGTTAATTTGAT+TGG | + | tig0026639:32782-32801 | Msa1430180:intron | 20.0% |
| !!! | ATGGACTAATACATAAAAAT+TGG | - | tig0026639:33235-33254 | Msa1430180:intergenic | 20.0% |
| !!! | TAGAATAACTTGTATTAATG+AGG | + | tig0026639:33988-34007 | Msa1430180:intron | 20.0% |
| !!! | GATTTTTTTATATGGTTTGT+TGG | + | tig0026639:35980-35999 | Msa1430180:intron | 20.0% |
| !!! | ATCATTTTTAGTGATTTATG+GGG | + | tig0026639:36531-36550 | Msa1430180:intron | 20.0% |
| !! | ACTAAACCATAGATTTAAAT+TGG | - | tig0026639:36679-36698 | Msa1430180:intergenic | 20.0% |
| !!! | CCATTTTAATGGTAATTATT+GGG | - | tig0026639:36796-36815 | Msa1430180:intergenic | 20.0% |
| !!! | ACCATTTTAATGGTAATTAT+TGG | - | tig0026639:36797-36816 | Msa1430180:intergenic | 20.0% |
| !! | AACTTATAATCCAGAATTTA+AGG | - | tig0026639:36930-36949 | Msa1430180:intergenic | 20.0% |
| !!! | TATACTAATTTTCTATCTCT+TGG | + | tig0026639:37371-37390 | Msa1430180:intron | 20.0% |
| !! | TTCTTAGGTTTATTAGATAA+CGG | + | tig0026639:37423-37442 | Msa1430180:intron | 20.0% |
| !! | TAAAAGCCATATTATGTATA+TGG | + | tig0026639:37703-37722 | Msa1430180:intron | 20.0% |
| !!! | AAATTTCCTTTCTTCTTTTA+AGG | + | tig0026639:37760-37779 | Msa1430180:intron | 20.0% |
| !!! | AATTTCCTTTCTTCTTTTAA+GGG | + | tig0026639:37761-37780 | Msa1430180:intron | 20.0% |
| !! | TGAGAAAACTGAAAATAATA+AGG | - | tig0026639:37799-37818 | Msa1430180:intergenic | 20.0% |
| !! | AGCAACAAAGAAAAATAAAT+AGG | - | tig0026639:37895-37914 | Msa1430180:intergenic | 20.0% |
| !! | ATTATATCCTAAGTAAAGAA+TGG | - | tig0026639:38060-38079 | Msa1430180:intergenic | 20.0% |
| !!! | TTTATTTTTCTGAGTATCTT+TGG | + | tig0026639:38379-38398 | Msa1430180:intron | 20.0% |
| !! | TTATATCTATTTCCAATGAT+AGG | - | tig0026639:38482-38501 | Msa1430180:intergenic | 20.0% |
| ! | ATGTAACTAGAATTTAGAAG+AGG | + | tig0026639:32917-32936 | Msa1430180:intron | 25.0% |
| !!! | ACTCGTTTGATATTTGTTTT+TGG | + | tig0026639:33039-33058 | Msa1430180:intron | 25.0% |
| !! | TTGGTAATTCATAGTTAGTA+TGG | + | tig0026639:33095-33114 | Msa1430180:intron | 25.0% |
| ! | TGGTAATTCATAGTTAGTAT+GGG | + | tig0026639:33096-33115 | Msa1430180:intron | 25.0% |
| ! | GCATAAGTTCATTTGAATAT+AGG | + | tig0026639:33886-33905 | Msa1430180:intron | 25.0% |
| !! | AGCTTTTATAAACATTACAC+AGG | - | tig0026639:34868-34887 | Msa1430180:intergenic | 25.0% |
| ! | CTTATAATGTCTTGGAATTT+GGG | - | tig0026639:34942-34961 | Msa1430180:intergenic | 25.0% |
| ! | TCTTATAATGTCTTGGAATT+TGG | - | tig0026639:34943-34962 | Msa1430180:intergenic | 25.0% |
| ! | CAGTTAATCTTATAATGTCT+TGG | - | tig0026639:34950-34969 | Msa1430180:intergenic | 25.0% |
| ! | AAAAAATCTAAAAGCAAAGC+TGG | - | tig0026639:35968-35987 | Msa1430180:intergenic | 25.0% |
| ! | GAAAAGACATTAAGTGATTT+AGG | + | tig0026639:36143-36162 | Msa1430180:intron | 25.0% |
| ! | ATTGTTCTAATAAAGACACT+TGG | + | tig0026639:36250-36269 | Msa1430180:intron | 25.0% |
| ! | TTGTTCTAATAAAGACACTT+GGG | + | tig0026639:36251-36270 | Msa1430180:intron | 25.0% |
| !! | CTTTTGGATAAAATTGTTGT+GGG | - | tig0026639:36279-36298 | Msa1430180:intergenic | 25.0% |
| !! | CACAACAATTTTATCCAAAA+GGG | + | tig0026639:36278-36297 | Msa1430180:intron | 25.0% |
| !! | ACAACAATTTTATCCAAAAG+GGG | + | tig0026639:36279-36298 | Msa1430180:intron | 25.0% |
| ! | CCTAAATAAATAGGAAAATC+AGG | - | tig0026639:36438-36457 | Msa1430180:intergenic | 25.0% |
| !! | CCTGATTTTCCTATTTATTT+AGG | + | tig0026639:36435-36454 | Msa1430180:intron | 25.0% |
| ! | AGACTCAATCCTAAATAAAT+AGG | - | tig0026639:36447-36466 | Msa1430180:intergenic | 25.0% |
| !! | ATACAATCATTTTCCTATGT+TGG | + | tig0026639:36467-36486 | Msa1430180:intron | 25.0% |
| !! | TACAATCATTTTCCTATGTT+GGG | + | tig0026639:36468-36487 | Msa1430180:intron | 25.0% |
| ! | AACTCTTAGAATTTGGATTA+AGG | - | tig0026639:36494-36513 | Msa1430180:intergenic | 25.0% |
| ! | AGTTGTAAACTCTTAGAATT+TGG | - | tig0026639:36501-36520 | Msa1430180:intergenic | 25.0% |
| ! | AACCATAGATTTAAATTGGA+TGG | - | tig0026639:36675-36694 | Msa1430180:intergenic | 25.0% |
| ! | TTGTCTAAAAACAATCTAGA+GGG | + | tig0026639:36712-36731 | Msa1430180:intron | 25.0% |
| !! | AAATATTGACTGTAATCGAA+AGG | - | tig0026639:36740-36759 | Msa1430180:intergenic | 25.0% |
| ! | CCCAATAATTACCATTAAAA+TGG | + | tig0026639:36793-36812 | Msa1430180:intron | 25.0% |
| !! | TTTCTACTGAACCATTTTAA+TGG | - | tig0026639:36807-36826 | Msa1430180:intergenic | 25.0% |
| ! | ATTAAAATGGTTCAGTAGAA+AGG | + | tig0026639:36806-36825 | Msa1430180:intron | 25.0% |
| ! | AAATCTGTGTCAAAATTATC+CGG | + | tig0026639:37083-37102 | Msa1430180:intron | 25.0% |
| ! | AAATTGTCTCCTTATTGAAT+CGG | - | tig0026639:37210-37229 | Msa1430180:intergenic | 25.0% |
| !! | ACAATCTTCAGTGTATTTTA+GGG | - | tig0026639:37276-37295 | Msa1430180:intergenic | 25.0% |
| !! | TACAATCTTCAGTGTATTTT+AGG | - | tig0026639:37277-37296 | Msa1430180:intergenic | 25.0% |
| ! | AAAACAGAGAATGTATACTA+GGG | - | tig0026639:37323-37342 | Msa1430180:intergenic | 25.0% |
| ! | AAAAACAGAGAATGTATACT+AGG | - | tig0026639:37324-37343 | Msa1430180:intergenic | 25.0% |
| !! | TTATTAGATAACGGTAACAA+CGG | + | tig0026639:37432-37451 | Msa1430180:CDS | 25.0% |
| ! | TTGGAACCATATACATAATA+TGG | - | tig0026639:37712-37731 | Msa1430180:intergenic | 25.0% |
| !! | GATCATATCGATTATCTTAT+TGG | - | tig0026639:37731-37750 | Msa1430180:intergenic | 25.0% |
| !!! | ATAGTTTTGTAAAGAAGACA+TGG | + | tig0026639:37820-37839 | Msa1430180:intron | 25.0% |
| !!! | TAGTTTTGTAAAGAAGACAT+GGG | + | tig0026639:37821-37840 | Msa1430180:intron | 25.0% |
| ! | TTTATATAACTAAGTTGCAG+TGG | + | tig0026639:37918-37937 | Msa1430180:intron | 25.0% |
| ! | AGTAAAGAATGGAATTAGTT+TGG | - | tig0026639:38049-38068 | Msa1430180:intergenic | 25.0% |
| ! | ACTAATTCCATTCTTTACTT+AGG | + | tig0026639:38050-38069 | Msa1430180:intron | 25.0% |
| !!! | AAAATAGGTTTTGATCTTTG+TGG | + | tig0026639:38521-38540 | Msa1430180:CDS | 25.0% |
| !! | AATTTTCAATTTGTAGCATC+AGG | - | tig0026639:38773-38792 | Msa1430180:intergenic | 25.0% |
| ! | AAGTAGATCATGATTACTTT+GGG | - | tig0026639:38800-38819 | Msa1430180:intergenic | 25.0% |
| ! | AAAGTAGATCATGATTACTT+TGG | - | tig0026639:38801-38820 | Msa1430180:intergenic | 25.0% |
| !! | AAGTAATCATGATCTACTTT+TGG | + | tig0026639:38801-38820 | Msa1430180:three_prime_UTR | 25.0% |
| !! | GATTTAAGAGATGCAATTTT+TGG | + | tig0026639:38842-38861 | Msa1430180:three_prime_UTR | 25.0% |
| ! | ATTCTATGTGTGAATCATAA+TGG | + | tig0026639:39049-39068 | Msa1430180:three_prime_UTR | 25.0% |
| ! | TTCTATGTGTGAATCATAAT+GGG | + | tig0026639:39050-39069 | Msa1430180:three_prime_UTR | 25.0% |
| ! | AAAGGCATAGAATTGAAAGA+TGG | - | tig0026639:32610-32629 | Msa1430180:intergenic | 30.0% |
| TCATAAAAGGGGGAAAAAAA+AGG | - | tig0026639:32628-32647 | Msa1430180:intergenic | 30.0% | |
| ! | AGGGTGTGTTTTTCATAAAA+GGG | - | tig0026639:32640-32659 | Msa1430180:intergenic | 30.0% |
| ! | TAGGGTGTGTTTTTCATAAA+AGG | - | tig0026639:32641-32660 | Msa1430180:intergenic | 30.0% |
| TTGCATTATCTTCAGTGAAT+TGG | - | tig0026639:32897-32916 | Msa1430180:intergenic | 30.0% | |
| TAATTCATAGTTAGTATGGG+AGG | + | tig0026639:33099-33118 | Msa1430180:intron | 30.0% | |
| TAAAGTTAAAAGGATGATGC+TGG | + | tig0026639:33443-33462 | Msa1430180:intron | 30.0% | |
| !!! | TTGGTCAATGTGTCATTTTA+AGG | + | tig0026639:33477-33496 | Msa1430180:intron | 30.0% |
| GTTGTCTTACATAGTACAAT+GGG | - | tig0026639:33589-33608 | Msa1430180:intergenic | 30.0% | |
| TGTGTACATAAATCAATGAG+TGG | + | tig0026639:33708-33727 | Msa1430180:CDS | 30.0% | |
| GTGTACATAAATCAATGAGT+GGG | + | tig0026639:33709-33728 | Msa1430180:CDS | 30.0% | |
| TGTACATAAATCAATGAGTG+GGG | + | tig0026639:33710-33729 | Msa1430180:CDS | 30.0% | |
| ! | GAAGCAAAAAATGAAGCATT+TGG | - | tig0026639:33794-33813 | Msa1430180:intergenic | 30.0% |
| TAGAGAAATAGACATACCAA+GGG | - | tig0026639:33859-33878 | Msa1430180:intergenic | 30.0% | |
| TTAGAGAAATAGACATACCA+AGG | - | tig0026639:33860-33879 | Msa1430180:intergenic | 30.0% | |
| ATACTACGATAACATCATAC+CGG | + | tig0026639:34047-34066 | Msa1430180:intron | 30.0% | |
| ACATCATACCGGTATATATA+TGG | + | tig0026639:34058-34077 | Msa1430180:intron | 30.0% | |
| CATCATACCGGTATATATAT+GGG | + | tig0026639:34059-34078 | Msa1430180:intron | 30.0% | |
| AGCAAAACCCATATATATAC+CGG | - | tig0026639:34069-34088 | Msa1430180:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | + | tig0026639:34172-34191 | Msa1430180:intron | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | - | tig0026639:34405-34424 | Msa1430180:intergenic | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | - | tig0026639:34356-34375 | Msa1430180:intergenic | 30.0% | |
| !! | ACACCAACTTACTTTTATGA+AGG | + | tig0026639:34405-34424 | Msa1430180:intron | 30.0% |
| ACACCTTCATAAAAGTAAGT+TGG | - | tig0026639:34172-34191 | Msa1430180:intergenic | 30.0% | |
| AAAGTGAAAATCACACCTTA+AGG | + | tig0026639:34453-34472 | Msa1430180:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | - | tig0026639:34471-34490 | Msa1430180:intergenic | 30.0% |
| ! | CATTTTGCTTACACATATGA+AGG | - | tig0026639:34629-34648 | Msa1430180:intergenic | 30.0% |
| ATTCTATTATGCTTTAGTCC+AGG | - | tig0026639:34978-34997 | Msa1430180:intergenic | 30.0% | |
| TGGACTAAAGCATAATAGAA+TGG | + | tig0026639:34977-34996 | Msa1430180:intron | 30.0% | |
| CCAATAATCAGAATAAGACA+CGG | - | tig0026639:35077-35096 | Msa1430180:intergenic | 30.0% | |
| !!! | TCATTGATCTCTTGTTTTAG+AGG | + | tig0026639:35226-35245 | Msa1430180:intron | 30.0% |
| TGTGAATCACAAGCTAAATT+TGG | + | tig0026639:35296-35315 | Msa1430180:CDS | 30.0% | |
| AATATACTTGAGAAAACGTC+AGG | - | tig0026639:35664-35683 | Msa1430180:intergenic | 30.0% | |
| !! | TTTGGAGTTTGATCACTTTT+TGG | + | tig0026639:35772-35791 | Msa1430180:CDS | 30.0% |
| AACAGATGCTATTGAACTAA+AGG | + | tig0026639:35826-35845 | Msa1430180:CDS | 30.0% | |
| GCATTTGCACTTAAGATAAA+TGG | + | tig0026639:36036-36055 | Msa1430180:intron | 30.0% | |
| ! | CCTTTTGGATAAAATTGTTG+TGG | - | tig0026639:36280-36299 | Msa1430180:intergenic | 30.0% |
| ! | CCACAACAATTTTATCCAAA+AGG | + | tig0026639:36277-36296 | Msa1430180:intron | 30.0% |
| ! | CAACAATTTTATCCAAAAGG+GGG | + | tig0026639:36280-36299 | Msa1430180:intron | 30.0% |
| AAAATTCTCTTAGCGTATCT+TGG | + | tig0026639:36372-36391 | Msa1430180:intron | 30.0% | |
| ACCACATCAAGAATGAATAA+AGG | - | tig0026639:36562-36581 | Msa1430180:intergenic | 30.0% | |
| ! | GGTATCAGATTTTGTATAAG+AGG | - | tig0026639:36642-36661 | Msa1430180:intergenic | 30.0% |
| ! | AAATTGGATGGCAATTTTCA+AGG | - | tig0026639:36663-36682 | Msa1430180:intergenic | 30.0% |
| TGCCATCCAATTTAAATCTA+TGG | + | tig0026639:36670-36689 | Msa1430180:intron | 30.0% | |
| CTTGTCTAAAAACAATCTAG+AGG | + | tig0026639:36711-36730 | Msa1430180:intron | 30.0% | |
| !! | AATTTGAGAAGTGTTACAAC+TGG | + | tig0026639:36882-36901 | Msa1430180:intron | 30.0% |
| TTGTTTAGAGAATCCAGATA+AGG | - | tig0026639:37027-37046 | Msa1430180:intergenic | 30.0% | |
| TTATCTGGATTCTCTAAACA+AGG | + | tig0026639:37026-37045 | Msa1430180:intron | 30.0% | |
| ! | TGTCAAAATTATCCGGTTTT+AGG | + | tig0026639:37090-37109 | Msa1430180:intron | 30.0% |
| ATCCTAATTCCGATTCAATA+AGG | + | tig0026639:37198-37217 | Msa1430180:intron | 30.0% | |
| TAAGGAGACAATTTATGACA+TGG | + | tig0026639:37216-37235 | Msa1430180:intron | 30.0% | |
| CACTTCAAACATATGATCTA+CGG | + | tig0026639:37243-37262 | Msa1430180:intron | 30.0% | |
| TCATAAGCATGCATTTAACA+AGG | - | tig0026639:37626-37645 | Msa1430180:intergenic | 30.0% | |
| ! | GAATGGAATTAGTTTGGAAT+CGG | - | tig0026639:37992-38011 | Msa1430180:intergenic | 30.0% |
| AGTGAAGAATGGAATTAGTT+TGG | - | tig0026639:37998-38017 | Msa1430180:intergenic | 30.0% | |
| TTTATATCCTGAGTGAAGAA+TGG | - | tig0026639:38009-38028 | Msa1430180:intergenic | 30.0% | |
| ! | GAATGGAATTAGTTTGGAAT+CGG | - | tig0026639:37992-38011 | Msa1430180:intergenic | 30.0% |
| !! | TTTTGGAAGACTGATATTTG+AGG | - | tig0026639:38153-38172 | Msa1430180:intergenic | 30.0% |
| AGTTTCACATAACCAATCTA+GGG | - | tig0026639:38199-38218 | Msa1430180:intergenic | 30.0% | |
| ATATAAATGCAATGACTGCA+AGG | + | tig0026639:38496-38515 | Msa1430180:CDS | 30.0% | |
| AATGACTGCAAGGAAAAAAT+AGG | + | tig0026639:38506-38525 | Msa1430180:CDS | 30.0% | |
| ! | ATGTTGTTGATTAAATCGAC+CGG | - | tig0026639:38576-38595 | Msa1430180:intergenic | 30.0% |
| ATTCTATGTTTCCTAAAGAC+TGG | - | tig0026639:38697-38716 | Msa1430180:intergenic | 30.0% | |
| AGATTCAGTTGGAAACTTAT+TGG | - | tig0026639:38878-38897 | Msa1430180:intergenic | 30.0% | |
| CTATGAGAATCCTACTATTA+AGG | - | tig0026639:38965-38984 | Msa1430180:intergenic | 30.0% | |
| CTTAATAGTAGGATTCTCAT+AGG | + | tig0026639:38963-38982 | Msa1430180:three_prime_UTR | 30.0% | |
| ! | TCATAATGGGATATACTCTA+TGG | + | tig0026639:39063-39082 | Msa1430180:three_prime_UTR | 30.0% |
| CAGAGATAGAGAATTTGGAA+TGG | - | tig0026639:32480-32499 | Msa0044200:intergenic | 35.0% | |
| ! | TTGTGTTCTCCATTTTCTGA+AGG | - | tig0026639:32503-32522 | Msa1430180:intergenic | 35.0% |
| ! | GGTGTGTTTTTCATAAAAGG+GGG | - | tig0026639:32638-32657 | Msa1430180:intergenic | 35.0% |
| ! | GGGTGTGTTTTTCATAAAAG+GGG | - | tig0026639:32639-32658 | Msa1430180:intergenic | 35.0% |
| !! | TCTGAAGTTGATATGCATGT+AGG | + | tig0026639:32832-32851 | Msa1430180:intron | 35.0% |
| !! | CTGAAGTTGATATGCATGTA+GGG | + | tig0026639:32833-32852 | Msa1430180:intron | 35.0% |
| GAAGAGGAAAAACTCATCAT+TGG | + | tig0026639:32933-32952 | Msa1430180:intron | 35.0% | |
| AGGAAAAACTCATCATTGGT+TGG | + | tig0026639:32937-32956 | Msa1430180:intron | 35.0% | |
| AACGAGTCACATTACATTCT+GGG | - | tig0026639:33026-33045 | Msa1430180:intergenic | 35.0% | |
| AAACGAGTCACATTACATTC+TGG | - | tig0026639:33027-33046 | Msa1430180:intergenic | 35.0% | |
| ATGGGAGGTAAATAATGTCT+AGG | + | tig0026639:33114-33133 | Msa1430180:intron | 35.0% | |
| ACATAAAAATTGGCACCTGA+AGG | - | tig0026639:33225-33244 | Msa1430180:intergenic | 35.0% | |
| GTATTAGTCCATATAGAGCT+TGG | + | tig0026639:33243-33262 | Msa1430180:intron | 35.0% | |
| AAAAAACAGTATCCGGTCAA+AGG | - | tig0026639:33295-33314 | Msa1430180:intergenic | 35.0% | |
| !! | CTCACGAATGATTTGTCTTT+TGG | + | tig0026639:33366-33385 | Msa1430180:intron | 35.0% |
| !! | TTGTCTTTTGGTAATCTTGC+TGG | + | tig0026639:33378-33397 | Msa1430180:intron | 35.0% |
| !!! | TAAAAGGATGATGCTGGTTT+TGG | + | tig0026639:33449-33468 | Msa1430180:intron | 35.0% |
| TAACACTACTTTCATCATGC+AGG | + | tig0026639:33548-33567 | Msa1430180:intron | 35.0% | |
| AACACTACTTTCATCATGCA+GGG | + | tig0026639:33549-33568 | Msa1430180:intron | 35.0% | |
| CGTTGTCTTACATAGTACAA+TGG | - | tig0026639:33590-33609 | Msa1430180:intergenic | 35.0% | |
| AATCTAAGTGTCCAACTTGT+AGG | + | tig0026639:33739-33758 | Msa1430180:CDS | 35.0% | |
| !! | TAGTATTGATGCCTACAAGT+TGG | - | tig0026639:33753-33772 | Msa1430180:intergenic | 35.0% |
| ! | ATCCTGTTGCTTACAATAGA+AGG | + | tig0026639:33823-33842 | Msa1430180:CDS | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | tig0026639:34130-34149 | Msa1430180:intergenic | 35.0% | |
| CTAAAAGACACCTTCACAAA+AGG | + | tig0026639:34227-34246 | Msa1430180:intron | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | + | tig0026639:34343-34362 | Msa1430180:intron | 35.0% |
| TTGATAAAAGACACCACCAA+AGG | + | tig0026639:34482-34501 | Msa1430180:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | + | tig0026639:34483-34502 | Msa1430180:intron | 35.0% | |
| GATCATTCAAGTGCATAACT+AGG | + | tig0026639:34652-34671 | Msa1430180:intron | 35.0% | |
| TTCCATATTGCCTAGAGATA+TGG | + | tig0026639:34704-34723 | Msa1430180:intron | 35.0% | |
| TCAAACACCTTCATTCTGTT+CGG | + | tig0026639:34800-34819 | Msa1430180:intron | 35.0% | |
| ! | AATGTCTTGGAATTTGGGTT+GGG | - | tig0026639:34937-34956 | Msa1430180:intergenic | 35.0% |
| TAATGTCTTGGAATTTGGGT+TGG | - | tig0026639:34938-34957 | Msa1430180:intergenic | 35.0% | |
| ! | GATAATTTTCTGCAGCTTTG+TGG | + | tig0026639:34999-35018 | Msa1430180:intron | 35.0% |
| ! | CCGTGTCTTATTCTGATTAT+TGG | + | tig0026639:35074-35093 | Msa1430180:intron | 35.0% |
| TAGAAGGTGATGTTGAGAAA+GGG | - | tig0026639:35139-35158 | Msa1430180:intergenic | 35.0% | |
| TTAGAGGAAGAGAAGAAATC+AGG | + | tig0026639:35242-35261 | Msa1430180:intron | 35.0% | |
| ATGTGTCGAGATCAAATTGA+GGG | - | tig0026639:35277-35296 | Msa1430180:intergenic | 35.0% | |
| !! | AATTTCAGGTTCTCCTTCAT+GGG | - | tig0026639:35417-35436 | Msa1430180:intergenic | 35.0% |
| !! | TAATTTCAGGTTCTCCTTCA+TGG | - | tig0026639:35418-35437 | Msa1430180:intergenic | 35.0% |
| TGTTGTGTAAGATTATCCTG+AGG | - | tig0026639:35470-35489 | Msa1430180:intergenic | 35.0% | |
| GATGTGGAATTTGACAAACT+TGG | - | tig0026639:35730-35749 | Msa1430180:intergenic | 35.0% | |
| TCAAACTCCAAACAGACTTT+CGG | - | tig0026639:35764-35783 | Msa1430180:intergenic | 35.0% | |
| ATACAAGAGGAAGATGTCTT+AGG | - | tig0026639:35866-35885 | Msa1430180:intergenic | 35.0% | |
| TTCAGTTACAACTATCTCGT+AGG | - | tig0026639:36126-36145 | Msa1430180:intergenic | 35.0% | |
| TTAAGTGATTTAGGTGTGAG+TGG | + | tig0026639:36152-36171 | Msa1430180:intron | 35.0% | |
| ! | AGAGAATTTTCTCCATAGCT+GGG | - | tig0026639:36362-36381 | Msa1430180:intergenic | 35.0% |
| ! | AAGAGAATTTTCTCCATAGC+TGG | - | tig0026639:36363-36382 | Msa1430180:intergenic | 35.0% |
| ! | TTTTAGTGATTTATGGGGAC+TGG | + | tig0026639:36536-36555 | Msa1430180:intron | 35.0% |
| GCCTTTATTCATTCTTGATG+TGG | + | tig0026639:36558-36577 | Msa1430180:intron | 35.0% | |
| !! | ATCACTATTTCTAACCTGTG+TGG | + | tig0026639:36583-36602 | Msa1430180:intron | 35.0% |
| ATGCTCATTCCAAATGCATT+TGG | + | tig0026639:36610-36629 | Msa1430180:intron | 35.0% | |
| AGGAATGATCCAAATGCATT+TGG | - | tig0026639:36622-36641 | Msa1430180:intergenic | 35.0% | |
| !!! | GTCAATATTTTAGCAAGCTC+TGG | + | tig0026639:36750-36769 | Msa1430180:intron | 35.0% |
| ACTTCTCAAATTCTCAGCAT+CGG | - | tig0026639:36874-36893 | Msa1430180:intergenic | 35.0% | |
| TAAGGAACAGCTTCGAATAA+CGG | - | tig0026639:36912-36931 | Msa1430180:intergenic | 35.0% | |
| ! | CGAGTGTTATCATTTTCTTG+AGG | + | tig0026639:36968-36987 | Msa1430180:intron | 35.0% |
| TCCTCATCTTTACCTAAAAC+CGG | - | tig0026639:37105-37124 | Msa1430180:intergenic | 35.0% | |
| CTCCTTATTGAATCGGAATT+AGG | - | tig0026639:37203-37222 | Msa1430180:intergenic | 35.0% | |
| CGTAGATCATATGTTTGAAG+TGG | - | tig0026639:37245-37264 | Msa1430180:intergenic | 35.0% | |
| ACAACGGTGAAAATATGGAA+TGG | + | tig0026639:37448-37467 | Msa1430180:CDS | 35.0% | |
| CTCTCATATACTGCTATAGT+AGG | + | tig0026639:37539-37558 | Msa1430180:intron | 35.0% | |
| ATGCTCCCTTAAAAGAAGAA+AGG | - | tig0026639:37769-37788 | Msa1430180:intergenic | 35.0% | |
| ! | TAGTTTGGAATCGGTCTTTA+TGG | - | tig0026639:37983-38002 | Msa1430180:intergenic | 35.0% |
| ACTAATTCCATTCTTCACTC+AGG | + | tig0026639:37999-38018 | Msa1430180:intron | 35.0% | |
| ! | TAGTTTGGAATCGGTCTTTA+TGG | - | tig0026639:37983-38002 | Msa1430180:intergenic | 35.0% |
| ! | ATGTCAGCTGAGTAGTTTTT+AGG | - | tig0026639:38092-38111 | Msa1430180:intergenic | 35.0% |
| TCTTCCAAAACATTAACCAC+TGG | + | tig0026639:38163-38182 | Msa1430180:intron | 35.0% | |
| CAGTTTCACATAACCAATCT+AGG | - | tig0026639:38200-38219 | Msa1430180:intergenic | 35.0% | |
| ! | AAATGCAGTGTGATAATGTG+TGG | + | tig0026639:38437-38456 | Msa1430180:intron | 35.0% |
| GTACAGGTATTACCTATCAT+TGG | + | tig0026639:38467-38486 | Msa1430180:intron | 35.0% | |
| ! | TGTTGTTGATTAAATCGACC+GGG | - | tig0026639:38575-38594 | Msa1430180:intergenic | 35.0% |
| TCAACATTATGTTACGACGA+GGG | - | tig0026639:38634-38653 | Msa1430180:intergenic | 35.0% | |
| AAGACTGGATGTTGAAAGAA+CGG | - | tig0026639:38682-38701 | Msa1430180:intergenic | 35.0% | |
| TCTTTCAACATCCAGTCTTT+AGG | + | tig0026639:38683-38702 | Msa1430180:CDS | 35.0% | |
| ! | AATTTACAGCTGAAGCACTT+GGG | + | tig0026639:38714-38733 | Msa1430180:CDS | 35.0% |
| AAGCTAGAGAAAGATTCAGT+TGG | - | tig0026639:38889-38908 | Msa1430180:intergenic | 35.0% | |
| !! | CTATGTTTGGCCTTAATAGT+AGG | + | tig0026639:38952-38971 | Msa1430180:three_prime_UTR | 35.0% |
| ACCAAATGATTGAACTCAAG+TGG | + | tig0026639:39101-39120 | Msa1430180:three_prime_UTR | 35.0% | |
| ACCACTTGAGTTCAATCATT+TGG | - | tig0026639:39105-39124 | Msa1430180:intergenic | 35.0% | |
| GAAGGCAGAGATAGAGAATT+TGG | - | tig0026639:32485-32504 | Msa0044200:intergenic | 40.0% | |
| CTATCTCTGCCTTCAGAAAA+TGG | + | tig0026639:32491-32510 | Msa1430180:exon | 40.0% | |
| CTTCATGTTCATCGTGATCA+AGG | - | tig0026639:32536-32555 | Msa1430180:intergenic | 40.0% | |
| CGCAACAACAAAAGGAATCT+GGG | - | tig0026639:32566-32585 | Msa1430180:intergenic | 40.0% | |
| ACGCAACAACAAAAGGAATC+TGG | - | tig0026639:32567-32586 | Msa1430180:intergenic | 40.0% | |
| CAGACAAACGCAACAACAAA+AGG | - | tig0026639:32574-32593 | Msa1430180:intergenic | 40.0% | |
| ACGAGTCACATTACATTCTG+GGG | - | tig0026639:33025-33044 | Msa1430180:intergenic | 40.0% | |
| AAATTGGCACCTGAAGGATT+CGG | - | tig0026639:33219-33238 | Msa1430180:intergenic | 40.0% | |
| TTAGTCCATATAGAGCTTGG+TGG | + | tig0026639:33246-33265 | Msa1430180:intron | 40.0% | |
| TAGTCCATATAGAGCTTGGT+GGG | + | tig0026639:33247-33266 | Msa1430180:intron | 40.0% | |
| TGATCAAGAATTGTTCACCC+AGG | + | tig0026639:33328-33347 | Msa1430180:intron | 40.0% | |
| TTCACCCAGGAATCGAATTT+GGG | + | tig0026639:33341-33360 | Msa1430180:intron | 40.0% | |
| ! | GGTAATCTTGCTGGTTGATA+TGG | + | tig0026639:33387-33406 | Msa1430180:intron | 40.0% |
| TGAACGTGTTAGTAGTGTGA+TGG | + | tig0026639:33629-33648 | Msa1430180:intron | 40.0% | |
| ATGACCACAAGCTGCAAAAA+TGG | - | tig0026639:33673-33692 | Msa1430180:intergenic | 40.0% | |
| GTCCTTCTATTGTAAGCAAC+AGG | - | tig0026639:33828-33847 | Msa1430180:intergenic | 40.0% | |
| AGACATACCAAGGGTTTGAT+TGG | - | tig0026639:33850-33869 | Msa1430180:intergenic | 40.0% | |
| TGCTAAAAGACACCACCAAA+GGG | - | tig0026639:34100-34119 | Msa1430180:intergenic | 40.0% | |
| TTGCTAAAAGACACCACCAA+AGG | - | tig0026639:34101-34120 | Msa1430180:intergenic | 40.0% | |
| ! | TTTTAGCAAGTCACACCTCA+AGG | + | tig0026639:34112-34131 | Msa1430180:intron | 40.0% |
| ! | CTACAAGACACCTTTTGTGA+AGG | - | tig0026639:34240-34259 | Msa1430180:intergenic | 40.0% |
| ! | TTTTGTTACAAGCCACCCTT+TGG | - | tig0026639:34501-34520 | Msa1430180:intergenic | 40.0% |
| CTTAGAGTCTCTTTCCAGTT+AGG | - | tig0026639:34601-34620 | Msa1430180:intergenic | 40.0% | |
| CTAACTGGAAAGAGACTCTA+AGG | + | tig0026639:34599-34618 | Msa1430180:intron | 40.0% | |
| AGGCCTTCATATGTGTGAAA+TGG | + | tig0026639:34672-34691 | Msa1430180:intron | 40.0% | |
| CCACCATTTCACACATATGA+AGG | - | tig0026639:34678-34697 | Msa1430180:intergenic | 40.0% | |
| CCTTCATATGTGTGAAATGG+TGG | + | tig0026639:34675-34694 | Msa1430180:intron | 40.0% | |
| TCAACAAAGGCCATATCTCT+AGG | - | tig0026639:34717-34736 | Msa1430180:intergenic | 40.0% | |
| ! | GAAGGCGGAATTTTCAACAA+AGG | - | tig0026639:34730-34749 | Msa1430180:intergenic | 40.0% |
| TGAAAATTCCGCCTTCATTG+TGG | + | tig0026639:34734-34753 | Msa1430180:intron | 40.0% | |
| !! | GAACAGAATGAAGGTGTTTG+AGG | - | tig0026639:34801-34820 | Msa1430180:intergenic | 40.0% |
| !! | TTCATTCTGTTCGGTGTGAA+GGG | + | tig0026639:34809-34828 | Msa1430180:intron | 40.0% |
| ATTACACAGGCCATATCTCT+AGG | - | tig0026639:34855-34874 | Msa1430180:intergenic | 40.0% | |
| CTAACTCAACCTTGCAAAAC+CGG | - | tig0026639:34913-34932 | Msa1430180:intergenic | 40.0% | |
| ATAAGATTAACTGCGTCTCC+TGG | + | tig0026639:34957-34976 | Msa1430180:intron | 40.0% | |
| TGTTTCATGCATACTGCTTG+AGG | + | tig0026639:35097-35116 | Msa1430180:intron | 40.0% | |
| GTTTCATGCATACTGCTTGA+GGG | + | tig0026639:35098-35117 | Msa1430180:intron | 40.0% | |
| CTAGAAGGTGATGTTGAGAA+AGG | - | tig0026639:35140-35159 | Msa1430180:intergenic | 40.0% | |
| TGTGTCGAGATCAAATTGAG+GGG | - | tig0026639:35276-35295 | Msa1430180:intergenic | 40.0% | |
| CATGTGTCGAGATCAAATTG+AGG | - | tig0026639:35278-35297 | Msa1430180:intergenic | 40.0% | |
| TTATCGTAGAGGAGGAAGAA+GGG | - | tig0026639:35334-35353 | Msa1430180:intergenic | 40.0% | |
| TTTATCGTAGAGGAGGAAGA+AGG | - | tig0026639:35335-35354 | Msa1430180:intergenic | 40.0% | |
| TTCCTCCTCTACGATAAATC+TGG | + | tig0026639:35337-35356 | Msa1430180:CDS | 40.0% | |
| ATCCAGATTTATCGTAGAGG+AGG | - | tig0026639:35342-35361 | Msa1430180:intergenic | 40.0% | |
| GGAATCCAGATTTATCGTAG+AGG | - | tig0026639:35345-35364 | Msa1430180:intergenic | 40.0% | |
| TGTCGGAACTTCTGAATGTA+TGG | + | tig0026639:35376-35395 | Msa1430180:CDS | 40.0% | |
| GAAGGAGAACCTGAAATTAC+TGG | + | tig0026639:35419-35438 | Msa1430180:CDS | 40.0% | |
| ACTCGAGTACCAGTAATTTC+AGG | - | tig0026639:35431-35450 | Msa1430180:intergenic | 40.0% | |
| !! | TGAAGAAAAAGCATTGCCTC+AGG | + | tig0026639:35451-35470 | Msa1430180:CDS | 40.0% |
| CATCCTGTAGTTCTTCATTG+CGG | + | tig0026639:35542-35561 | Msa1430180:CDS | 40.0% | |
| TGTCAAATTCCACATCCAAG+AGG | + | tig0026639:35734-35753 | Msa1430180:CDS | 40.0% | |
| AGGATTTCCGAAAGTCTGTT+TGG | + | tig0026639:35754-35773 | Msa1430180:CDS | 40.0% | |
| !!! | GGAGTTTGATCACTTTTTGG+AGG | + | tig0026639:35775-35794 | Msa1430180:CDS | 40.0% |
| GTTCTCTGTGCATATTCTTC+AGG | - | tig0026639:35809-35828 | Msa1430180:intergenic | 40.0% | |
| CTTAAGTGCAAATGCTAGCA+AGG | - | tig0026639:36031-36050 | Msa1430180:intergenic | 40.0% | |
| ATCCTTGTGGAACAGTTTCA+GGG | - | tig0026639:36096-36115 | Msa1430180:intergenic | 40.0% | |
| AATCCTTGTGGAACAGTTTC+AGG | - | tig0026639:36097-36116 | Msa1430180:intergenic | 40.0% | |
| ! | ATAACACTATCTCCCCCTTT+TGG | - | tig0026639:36295-36314 | Msa1430180:intergenic | 40.0% |
| TTTGGATTAAGGCCCAACAT+AGG | - | tig0026639:36483-36502 | Msa1430180:intergenic | 40.0% | |
| !! | CTATTTCTAACCTGTGTGGA+TGG | + | tig0026639:36587-36606 | Msa1430180:intron | 40.0% |
| AAGGAACAGCTTCGAATAAC+GGG | - | tig0026639:36911-36930 | Msa1430180:intergenic | 40.0% | |
| CGAAGCTGTTCCTTAAATTC+TGG | + | tig0026639:36917-36936 | Msa1430180:intron | 40.0% | |
| AGAATCCAGATAAGGAGACT+AGG | - | tig0026639:37019-37038 | Msa1430180:intergenic | 40.0% | |
| !!! | TCCGGTTTTAGGTAAAGATG+AGG | + | tig0026639:37101-37120 | Msa1430180:intron | 40.0% |
| CGGTAACAACGGTGAAAATA+TGG | + | tig0026639:37443-37462 | Msa1430180:CDS | 40.0% | |
| !! | GAGTTGGTTGTGACTTTTGT+GGG | + | tig0026639:37502-37521 | Msa1430180:CDS | 40.0% |
| ! | AGTTGGTTGTGACTTTTGTG+GGG | + | tig0026639:37503-37522 | Msa1430180:CDS | 40.0% |
| TACCTGTCTAGTATGAAGCA+GGG | - | tig0026639:37578-37597 | Msa1430180:intergenic | 40.0% | |
| AGCATGCATTTAACAAGGAC+AGG | - | tig0026639:37621-37640 | Msa1430180:intergenic | 40.0% | |
| !! | TCTACTATGACTCGGTTGAA+AGG | + | tig0026639:37942-37961 | Msa1430180:intron | 40.0% |
| ! | TGTGCCAGTGGTTAATGTTT+TGG | - | tig0026639:38170-38189 | Msa1430180:intergenic | 40.0% |
| ! | AATGTGTGGCTTGTATGTAC+AGG | + | tig0026639:38451-38470 | Msa1430180:intron | 40.0% |
| ATTAAATCGACCGGGAAGTT+TGG | - | tig0026639:38567-38586 | Msa1430180:intergenic | 40.0% | |
| AAGCTTGAAACTGTGATCTG+AGG | - | tig0026639:38600-38619 | Msa1430180:intergenic | 40.0% | |
| CTCAACATTATGTTACGACG+AGG | - | tig0026639:38635-38654 | Msa1430180:intergenic | 40.0% | |
| CTCGTCGTAACATAATGTTG+AGG | + | tig0026639:38633-38652 | Msa1430180:CDS | 40.0% | |
| ATAATGTTGAGGCTGATCAC+TGG | + | tig0026639:38644-38663 | Msa1430180:CDS | 40.0% | |
| ! | GAATTTACAGCTGAAGCACT+TGG | + | tig0026639:38713-38732 | Msa1430180:CDS | 40.0% |
| TTGTAGCATCAGGTTCATCT+TGG | - | tig0026639:38763-38782 | Msa1430180:intergenic | 40.0% | |
| ATGCAATGCGCAACTATGTT+TGG | + | tig0026639:38939-38958 | Msa1430180:three_prime_UTR | 40.0% | |
| TCTAGGCTAGAAACCCACAT+GGG | + | tig0026639:33131-33150 | Msa1430180:intron | 45.0% | |
| CAATCCCACCAAGCTCTATA+TGG | - | tig0026639:33254-33273 | Msa1430180:intergenic | 45.0% | |
| ! | CATATAGAGCTTGGTGGGAT+TGG | + | tig0026639:33252-33271 | Msa1430180:intron | 45.0% |
| GGTCAAAGGACCAACTAATC+CGG | - | tig0026639:33281-33300 | Msa1430180:intergenic | 45.0% | |
| !! | GGATTAGTTGGTCCTTTGAC+CGG | + | tig0026639:33280-33299 | Msa1430180:intron | 45.0% |
| GTTCACCCAGGAATCGAATT+TGG | + | tig0026639:33340-33359 | Msa1430180:intron | 45.0% | |
| AGAGCCCAAATTCGATTCCT+GGG | - | tig0026639:33348-33367 | Msa1430180:intergenic | 45.0% | |
| !!! | GATGCTGGTTTTGGACATGT+TGG | + | tig0026639:33458-33477 | Msa1430180:intron | 45.0% |
| !! | TCCTCCATTTTTGCAGCTTG+TGG | + | tig0026639:33666-33685 | Msa1430180:intron | 45.0% |
| ACCACAAGCTGCAAAAATGG+AGG | - | tig0026639:33670-33689 | Msa1430180:intergenic | 45.0% | |
| !! | GTGGTCATATGTGCTGTTTC+TGG | + | tig0026639:33685-33704 | Msa1430180:CDS | 45.0% |
| ! | GAAGCATTTGGCAGACTGTT+GGG | - | tig0026639:33782-33801 | Msa1430180:intergenic | 45.0% |
| ! | TGAAGCATTTGGCAGACTGT+TGG | - | tig0026639:33783-33802 | Msa1430180:intergenic | 45.0% |
| AGAAGGACCAATCAAACCCT+TGG | + | tig0026639:33840-33859 | Msa1430180:CDS | 45.0% | |
| ! | TTTTGCTACAAGCCACCCTT+TGG | + | tig0026639:34082-34101 | Msa1430180:intron | 45.0% |
| TAAAAGACACCACCAAAGGG+TGG | - | tig0026639:34486-34505 | Msa1430180:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | tig0026639:34486-34505 | Msa1430180:intron | 45.0% | |
| CAAGCAAGAGATGTCCTAAC+TGG | + | tig0026639:34584-34603 | Msa1430180:intron | 45.0% | |
| GGCCATATCTCTAGGCAATA+TGG | - | tig0026639:34709-34728 | Msa1430180:intergenic | 45.0% | |
| AACCCAGATGTCGCAATTAG+GGG | - | tig0026639:34765-34784 | Msa1430180:intergenic | 45.0% | |
| CAACCCAGATGTCGCAATTA+GGG | - | tig0026639:34766-34785 | Msa1430180:intergenic | 45.0% | |
| CTTCACACCGAACAGAATGA+AGG | - | tig0026639:34810-34829 | Msa1430180:intergenic | 45.0% | |
| !! | CTTCATTCTGTTCGGTGTGA+AGG | + | tig0026639:34808-34827 | Msa1430180:intron | 45.0% |
| !! | TCATTCTGTTCGGTGTGAAG+GGG | + | tig0026639:34810-34829 | Msa1430180:intron | 45.0% |
| TCCCACATTGCCTAGAGATA+TGG | + | tig0026639:34842-34861 | Msa1430180:intron | 45.0% | |
| GCCATATCTCTAGGCAATGT+GGG | - | tig0026639:34846-34865 | Msa1430180:intergenic | 45.0% | |
| !! | AAAACCGGCTTGTAAGGTGA+AGG | - | tig0026639:34898-34917 | Msa1430180:intergenic | 45.0% |
| ! | CGGTTTTGCAAGGTTGAGTT+AGG | + | tig0026639:34911-34930 | Msa1430180:intron | 45.0% |
| AAGGTGATGTTGAGAAAGGG+AGG | - | tig0026639:35136-35155 | Msa1430180:intergenic | 45.0% | |
| GATTCCAACTCCAGCAATGT+CGG | + | tig0026639:35359-35378 | Msa1430180:CDS | 45.0% | |
| TTCAGAAGTTCCGACATTGC+TGG | - | tig0026639:35372-35391 | Msa1430180:intergenic | 45.0% | |
| TCTGAATGTATGGACCAACC+TGG | + | tig0026639:35386-35405 | Msa1430180:CDS | 45.0% | |
| CTGAATGTATGGACCAACCT+GGG | + | tig0026639:35387-35406 | Msa1430180:CDS | 45.0% | |
| CACATTGTACACATCACGTC+AGG | - | tig0026639:35506-35525 | Msa1430180:intergenic | 45.0% | |
| TGACCGCAATGAAGAACTAC+AGG | - | tig0026639:35548-35567 | Msa1430180:intergenic | 45.0% | |
| GTAGTTCTTCATTGCGGTCA+TGG | + | tig0026639:35548-35567 | Msa1430180:CDS | 45.0% | |
| TTCGGAAATCCTCTTGGATG+TGG | - | tig0026639:35746-35765 | Msa1430180:intergenic | 45.0% | |
| CAGACTTTCGGAAATCCTCT+TGG | - | tig0026639:35752-35771 | Msa1430180:intergenic | 45.0% | |
| TCAGGGCAATATCGTTCTGT+AGG | - | tig0026639:36079-36098 | Msa1430180:intergenic | 45.0% | |
| ! | CGTAGGAGTTCTAATCCTTG+TGG | - | tig0026639:36109-36128 | Msa1430180:intergenic | 45.0% |
| !! | AGCATCGGCTATAAGAGAGT+AGG | - | tig0026639:36859-36878 | Msa1430180:intergenic | 45.0% |
| CAGATAAGGAGACTAGGACA+CGG | - | tig0026639:37013-37032 | Msa1430180:intergenic | 45.0% | |
| !! | TCGAAAGCTCACTTTGGAGT+TGG | + | tig0026639:37486-37505 | Msa1430180:CDS | 45.0% |
| !! | GGAGTTGGTTGTGACTTTTG+TGG | + | tig0026639:37501-37520 | Msa1430180:CDS | 45.0% |
| ACCTGTCTAGTATGAAGCAG+GGG | - | tig0026639:37577-37596 | Msa1430180:intergenic | 45.0% | |
| CTACCTGTCTAGTATGAAGC+AGG | - | tig0026639:37579-37598 | Msa1430180:intergenic | 45.0% | |
| ! | CAGGTAGTCATCGTTTTACG+CGG | + | tig0026639:37592-37611 | Msa1430180:intron | 45.0% |
| ATTATGTTACGACGAGGGTC+AGG | - | tig0026639:38629-38648 | Msa1430180:intergenic | 45.0% | |
| GCTGATCACTGGACAGTTAA+GGG | + | tig0026639:38655-38674 | Msa1430180:CDS | 45.0% | |
| ! | GAAGCACTTGGGTTGTTTGA+TGG | + | tig0026639:38725-38744 | Msa1430180:CDS | 45.0% |
| !!! | AAATTATTTTATCTATTTAT+TGG | + | tig0026639:35182-35201 | Msa1430180:intron | 5.0% |
| !!! | AATTATTTTATCTATTTATT+GGG | + | tig0026639:35183-35202 | Msa1430180:intron | 5.0% |
| !! | TAAATATAAAAAGAATTTAA+AGG | - | tig0026639:38363-38382 | Msa1430180:intergenic | 5.0% |
| TTCCTAGGGGAAAGAGGCTT+TGG | + | tig0026639:33076-33095 | Msa1430180:intron | 50.0% | |
| TACCAAAGCCTCTTTCCCCT+AGG | - | tig0026639:33081-33100 | Msa1430180:intergenic | 50.0% | |
| GTCTAGGCTAGAAACCCACA+TGG | + | tig0026639:33130-33149 | Msa1430180:intron | 50.0% | |
| ! | CTTGAGAGGAGCACACTCTA+AGG | - | tig0026639:33182-33201 | Msa1430180:intergenic | 50.0% |
| CTTAGAGTGTGCTCCTCTCA+AGG | + | tig0026639:33180-33199 | Msa1430180:intron | 50.0% | |
| ACTTGAGCTGAGACCTTGAG+AGG | - | tig0026639:33196-33215 | Msa1430180:intergenic | 50.0% | |
| AGCTCAAGTCCGAATCCTTC+AGG | + | tig0026639:33207-33226 | Msa1430180:intron | 50.0% | |
| !! | GGATTGGTCTCCGGATTAGT+TGG | + | tig0026639:33268-33287 | Msa1430180:intron | 50.0% |
| GAGAGCCCAAATTCGATTCC+TGG | - | tig0026639:33349-33368 | Msa1430180:intergenic | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | - | tig0026639:34498-34517 | Msa1430180:intergenic | 50.0% | |
| ACCCAGATGTCGCAATTAGG+GGG | - | tig0026639:34764-34783 | Msa1430180:intergenic | 50.0% | |
| GCAACCCAGATGTCGCAATT+AGG | - | tig0026639:34767-34786 | Msa1430180:intergenic | 50.0% | |
| ! | GGTGTTTGAGGCTGCAACAA+AGG | - | tig0026639:34789-34808 | Msa1430180:intergenic | 50.0% |
| GGCCATATCTCTAGGCAATG+TGG | - | tig0026639:34847-34866 | Msa1430180:intergenic | 50.0% | |
| !! | CCTTGCAAAACCGGCTTGTA+AGG | - | tig0026639:34904-34923 | Msa1430180:intergenic | 50.0% |
| !! | CCTTACAAGCCGGTTTTGCA+AGG | + | tig0026639:34901-34920 | Msa1430180:intron | 50.0% |
| AGTTCCGACATTGCTGGAGT+TGG | - | tig0026639:35366-35385 | Msa1430180:intergenic | 50.0% | |
| TGCCCTGAAACTGTTCCACA+AGG | + | tig0026639:36091-36110 | Msa1430180:intron | 50.0% | |
| AAGAGTCAAGCTCCCAGCTA+TGG | + | tig0026639:36347-36366 | Msa1430180:intron | 50.0% | |
| GAATGAGCATCCATCCACAC+AGG | - | tig0026639:36600-36619 | Msa1430180:intergenic | 50.0% | |
| CGTGTCCTAGTCTCCTTATC+TGG | + | tig0026639:37011-37030 | Msa1430180:intron | 50.0% | |
| ! | CCAAAGTGAGCTTTCGAGTC+AGG | - | tig0026639:37483-37502 | Msa1430180:intergenic | 50.0% |
| ! | CCTGACTCGAAAGCTCACTT+TGG | + | tig0026639:37480-37499 | Msa1430180:CDS | 50.0% |
| TCCCCTGCTTCATACTAGAC+AGG | + | tig0026639:37573-37592 | Msa1430180:intron | 50.0% | |
| ! | GCAGTGGCTCTACTATGACT+CGG | + | tig0026639:37934-37953 | Msa1430180:intron | 50.0% |
| GGCACACACATTCCCTAGAT+TGG | + | tig0026639:38184-38203 | Msa1430180:intron | 50.0% | |
| GGCTGATCACTGGACAGTTA+AGG | + | tig0026639:38654-38673 | Msa1430180:CDS | 50.0% | |
| ! | GCACTTGGGTTGTTTGATGG+TGG | + | tig0026639:38728-38747 | Msa1430180:CDS | 50.0% |
| TGCTAACCCTCGCGTTCCTA+GGG | + | tig0026639:33062-33081 | Msa1430180:intron | 55.0% | |
| TCTTTCCCCTAGGAACGCGA+GGG | - | tig0026639:33071-33090 | Msa1430180:intergenic | 55.0% | |
| GGCTAGAAACCCACATGGGT+TGG | + | tig0026639:33135-33154 | Msa1430180:intron | 55.0% | |
| ACAACGAGGCCAACCCATGT+GGG | - | tig0026639:33147-33166 | Msa1430180:intergenic | 55.0% | |
| !! | ATGGGTTGGCCTCGTTGTGT+AGG | + | tig0026639:33149-33168 | Msa1430180:intron | 55.0% |
| GGTCTCAAGCCTACACAACG+AGG | - | tig0026639:33161-33180 | Msa1430180:intergenic | 55.0% | |
| !! | AGCTTGGTGGGATTGGTCTC+CGG | + | tig0026639:33259-33278 | Msa1430180:intron | 55.0% |
| TGCTACAAGCCACCCTTTGG+TGG | + | tig0026639:34085-34104 | Msa1430180:intron | 55.0% | |
| AGATGTCGCAATTAGGGGGC+GGG | - | tig0026639:34760-34779 | Msa1430180:intergenic | 55.0% | |
| CAGATGTCGCAATTAGGGGG+CGG | - | tig0026639:34761-34780 | Msa1430180:intergenic | 55.0% | |
| GCCCCCTAATTGCGACATCT+GGG | + | tig0026639:34760-34779 | Msa1430180:intron | 55.0% | |
| GCAGCCTTCACCTTACAAGC+CGG | + | tig0026639:34891-34910 | Msa1430180:intron | 55.0% | |
| CTTCATGGGAAGACCCAGGT+TGG | - | tig0026639:35403-35422 | Msa1430180:intergenic | 55.0% | |
| CAACCTGGGTCTTCCCATGA+AGG | + | tig0026639:35401-35420 | Msa1430180:CDS | 55.0% | |
| TCTCCTTCATGGGAAGACCC+AGG | - | tig0026639:35407-35426 | Msa1430180:intergenic | 55.0% | |
| CTAGGGAATGTGTGTGCCAG+TGG | - | tig0026639:38182-38201 | Msa1430180:intergenic | 55.0% | |
| GACAGTCGCTCCAAACTTCC+CGG | + | tig0026639:38554-38573 | Msa1430180:CDS | 55.0% | |
| GTGCTAACCCTCGCGTTCCT+AGG | + | tig0026639:33061-33080 | Msa1430180:intron | 60.0% | |
| GCTAACCCTCGCGTTCCTAG+GGG | + | tig0026639:33063-33082 | Msa1430180:intron | 60.0% | |
| CTCTTTCCCCTAGGAACGCG+AGG | - | tig0026639:33072-33091 | Msa1430180:intergenic | 60.0% | |
| CTCGCGTTCCTAGGGGAAAG+AGG | + | tig0026639:33070-33089 | Msa1430180:intron | 60.0% | |
| CACAACGAGGCCAACCCATG+TGG | - | tig0026639:33148-33167 | Msa1430180:intergenic | 60.0% | |
| CGCCCCCTAATTGCGACATC+TGG | + | tig0026639:34759-34778 | Msa1430180:intron | 60.0% | |
| TAGGGGGCGGGCCACAATGA+AGG | - | tig0026639:34748-34767 | Msa1430180:intergenic | 65.0% | |
| GGGGCGGGCCACAATGAAGG+CGG | - | tig0026639:34745-34764 | Msa1430180:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026639 | gene | 32431 | 39145 | 32431 | ID=Msa1430180;Name=Msa1430180 |
| tig0026639 | mRNA | 32431 | 39145 | 32431 | ID=Msa1430180-mRNA-1;Parent=Msa1430180;Name=Msa1430180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=79|1|1|1|0.83|0.85|7|358|409 |
| tig0026639 | exon | 32431 | 32592 | 32431 | ID=Msa1430180-mRNA-1:exon:6850;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 33570 | 33598 | 33570 | ID=Msa1430180-mRNA-1:exon:6851;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 33682 | 33861 | 33682 | ID=Msa1430180-mRNA-1:exon:6852;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 35246 | 35569 | 35246 | ID=Msa1430180-mRNA-1:exon:6853;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 35678 | 35881 | 35678 | ID=Msa1430180-mRNA-1:exon:6854;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 37430 | 37524 | 37430 | ID=Msa1430180-mRNA-1:exon:6855;Parent=Msa1430180-mRNA-1 |
| tig0026639 | exon | 38473 | 39145 | 38473 | ID=Msa1430180-mRNA-1:exon:6856;Parent=Msa1430180-mRNA-1 |
| tig0026639 | five_prime_UTR | 32431 | 32509 | 32431 | ID=Msa1430180-mRNA-1:five_prime_utr;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 32510 | 32592 | 32510 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 33570 | 33598 | 33570 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 33682 | 33861 | 33682 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 35246 | 35569 | 35246 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 35678 | 35881 | 35678 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 37430 | 37524 | 37430 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | CDS | 38473 | 38787 | 38473 | ID=Msa1430180-mRNA-1:cds;Parent=Msa1430180-mRNA-1 |
| tig0026639 | three_prime_UTR | 38788 | 39145 | 38788 | ID=Msa1430180-mRNA-1:three_prime_utr;Parent=Msa1430180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
